BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028143
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5FIU2|MIAB_FLAJ1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
2064 / UW101) GN=miaB PE=3 SV=1
Length = 481
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
Query: 45 VMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY 104
V SE + VD+ Q L + P+ F T N MH+ ++ +++ I K HI+
Sbjct: 239 VNASEMQKATAVDFDQLLEMVAVGFPKMRIRFSTSNPQDMHESILHVMAKYPNICK-HIH 297
Query: 105 TSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPE---SQELLAKVKTVIEKPHNDH 161
SG+N + R + + +I ++ P+ SQ+++A T E+ H D
Sbjct: 298 LPVQSGSNRILKEMNRLHSREEYMALI--DKIRAIVPDASISQDMIAGFPTETEQDHQDT 355
Query: 162 LPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL 209
+ L+E + + S+ ++ A + +E +A+ L++IV L
Sbjct: 356 MSLMEYVKYNFGYMYSYSERPGTLAGRKMKDDVEEETKARRLQEIVDL 403
>sp|A9KHY6|DAPA_CLOPH 4-hydroxy-tetrahydrodipicolinate synthase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=dapA PE=3 SV=1
Length = 294
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 37 SVVEGSGAVMVSEFKPVPDVDY--LQELLAIQ-QQGPRAIGFFGT--RNMGFMHQELIEI 91
++ G+G +V+ FK +V+Y L EL+ Q G +I GT + H+E IE
Sbjct: 2 AIFTGAGVAIVTPFKENREVNYEKLGELIDFQINNGTDSIIICGTTGESSTLTHEEHIEC 61
Query: 92 LSYALVITKNHIYTSGASGTNA 113
+ +A+ TK + +G+N
Sbjct: 62 IRFAIEYTKKRVPVIAGTGSNC 83
>sp|Q7VA30|RPOC2_PROMA DNA-directed RNA polymerase subunit beta' OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=rpoC2 PE=3
SV=1
Length = 1367
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 34 QAQSVVEGSGAVM--VSEFKPVPDVDYLQELLAI-QQQGPRAIGFFGTRNMGFMHQELIE 90
Q EG G ++ V E+ +PD L EL + QQQGP ++G T+ +G+ ELI+
Sbjct: 751 QTIETTEGKGVLLRPVEEYT-IPDKAQLPELSHVTQQQGP-SLGLKATQRLGYKDGELIK 808
>sp|Q4JT51|RS19_CORJK 30S ribosomal protein S19 OS=Corynebacterium jeikeium (strain K411)
GN=rpsS PE=3 SV=1
Length = 92
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 132 LPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSR 191
+P+SLKK P + LLAKV EK + + + D I H FA HD R
Sbjct: 1 MPRSLKKGPFVDEHLLAKVDAQNEKGNKNVIKTWSRRSTILPDFIGH-----TFAVHDGR 55
>sp|Q8FSJ0|DEOC_COREF Deoxyribose-phosphate aldolase OS=Corynebacterium efficiens (strain
DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=deoC PE=3 SV=2
Length = 222
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 129 TVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEA--SRLC------NMDIISHVQ 180
T+ +P S+ +Q+ ++ TV PH PL++A +RL +D++ +
Sbjct: 40 TICIPPSMMNATKRAQDAGLRIATVAGFPHGKSAPLVKAAEARLAVQYGASEVDVVLDIA 99
Query: 181 QVICFAFHDSRLLMETCQEAKNLRKIVTLFYL 212
V A D+ LL E + L VTL ++
Sbjct: 100 AV--KAADDNALLAEMVAIREALASPVTLKFI 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,853,538
Number of Sequences: 539616
Number of extensions: 3021169
Number of successful extensions: 7944
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7941
Number of HSP's gapped (non-prelim): 10
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)