Query 028143
Match_columns 213
No_of_seqs 56 out of 58
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 06:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02481 DNA_processg_A: DNA r 99.1 1.3E-09 2.8E-14 90.8 12.0 139 68-209 42-186 (212)
2 TIGR00732 dprA DNA protecting 98.5 4.3E-06 9.2E-11 70.5 13.3 136 71-210 45-187 (220)
3 TIGR00725 conserved hypothetic 97.7 0.00045 9.8E-09 55.7 10.1 121 71-211 2-122 (159)
4 PRK10736 hypothetical protein; 97.4 0.0043 9.2E-08 57.3 12.8 135 71-209 108-249 (374)
5 COG0758 Smf Predicted Rossmann 95.8 0.27 5.9E-06 45.4 13.3 130 71-209 112-252 (350)
6 PF06908 DUF1273: Protein of u 95.0 0.67 1.5E-05 38.7 12.0 142 71-212 2-168 (177)
7 TIGR00730 conserved hypothetic 93.7 0.2 4.2E-06 41.5 6.0 65 71-137 1-68 (178)
8 PRK13660 hypothetical protein; 92.0 5.7 0.00012 33.7 12.5 139 71-211 2-167 (182)
9 COG1611 Predicted Rossmann fol 87.2 2.4 5.3E-05 36.0 6.7 71 67-139 11-84 (205)
10 TIGR02668 moaA_archaeal probab 75.2 11 0.00025 31.9 6.5 39 58-98 45-83 (302)
11 COG1453 Predicted oxidoreducta 72.0 28 0.0006 33.5 8.8 115 84-200 32-165 (391)
12 PRK09331 Sep-tRNA:Cys-tRNA syn 71.7 5.4 0.00012 34.9 3.9 48 73-122 54-101 (387)
13 PRK13361 molybdenum cofactor b 69.8 32 0.0007 30.1 8.2 73 64-144 56-130 (329)
14 PF13353 Fer4_12: 4Fe-4S singl 69.7 8.8 0.00019 28.2 4.1 58 56-115 38-100 (139)
15 cd01391 Periplasmic_Binding_Pr 68.7 41 0.00089 24.8 7.4 39 64-103 118-156 (269)
16 PF01408 GFO_IDH_MocA: Oxidore 66.1 12 0.00027 26.6 4.2 51 116-170 54-105 (120)
17 TIGR02109 PQQ_syn_pqqE coenzym 60.1 54 0.0012 28.5 7.7 72 66-145 50-122 (358)
18 PLN03032 serine decarboxylase; 59.5 21 0.00045 32.7 5.3 76 56-134 35-118 (374)
19 cd06450 DOPA_deC_like DOPA dec 59.1 42 0.00091 27.9 6.6 43 79-121 34-79 (345)
20 TIGR03278 methan_mark_10 putat 56.5 1.2E+02 0.0025 28.6 9.7 134 57-204 58-196 (404)
21 cd01820 PAF_acetylesterase_lik 56.1 40 0.00087 26.9 5.9 90 58-152 17-120 (214)
22 PF04055 Radical_SAM: Radical 55.3 48 0.001 23.5 5.6 71 57-130 32-106 (166)
23 PRK05301 pyrroloquinoline quin 54.3 1.2E+02 0.0026 26.8 8.9 73 65-145 58-131 (378)
24 cd06150 YjgF_YER057c_UK114_lik 54.2 5.1 0.00011 29.5 0.4 17 97-113 7-23 (105)
25 PF13580 SIS_2: SIS domain; PD 51.8 86 0.0019 24.1 6.9 106 87-209 23-135 (138)
26 TIGR01706 NAPA periplasmic nit 51.1 38 0.00082 33.6 6.0 30 56-85 125-156 (830)
27 COG1104 NifS Cysteine sulfinat 50.9 9.2 0.0002 36.2 1.7 25 99-123 61-85 (386)
28 PF01042 Ribonuc_L-PSP: Endori 50.4 6.2 0.00013 29.6 0.4 43 98-153 16-58 (121)
29 cd01835 SGNH_hydrolase_like_3 50.3 53 0.0011 25.3 5.5 64 70-133 1-78 (193)
30 PF10686 DUF2493: Protein of u 49.9 58 0.0013 23.6 5.4 50 71-121 4-55 (71)
31 cd06452 SepCysS Sep-tRNA:Cys-t 49.7 23 0.0005 30.3 3.8 36 84-120 45-80 (361)
32 PRK00164 moaA molybdenum cofac 46.7 87 0.0019 27.0 6.8 39 58-98 54-92 (331)
33 PRK10200 putative racemase; Pr 46.5 20 0.00042 30.4 2.8 15 65-79 112-126 (230)
34 cd02951 SoxW SoxW family; SoxW 45.4 44 0.00094 24.4 4.2 32 57-88 1-33 (125)
35 KOG1549 Cysteine desulfurase N 44.4 15 0.00033 35.4 2.0 28 98-125 101-128 (428)
36 PF03807 F420_oxidored: NADP o 44.0 24 0.00052 24.5 2.5 35 171-206 54-89 (96)
37 cd01425 RPS2 Ribosomal protein 43.9 96 0.0021 25.7 6.4 46 69-120 55-103 (193)
38 PLN02951 Molybderin biosynthes 43.8 59 0.0013 29.6 5.6 41 58-100 95-135 (373)
39 PRK03910 D-cysteine desulfhydr 43.6 69 0.0015 28.0 5.8 77 83-159 47-129 (331)
40 PRK14338 (dimethylallyl)adenos 43.6 2.5E+02 0.0054 26.2 9.7 139 57-210 188-342 (459)
41 TIGR02326 transamin_PhnW 2-ami 43.5 76 0.0016 27.0 5.9 18 155-172 139-156 (363)
42 TIGR01275 ACC_deam_rel pyridox 43.0 68 0.0015 27.5 5.6 52 82-134 38-90 (311)
43 TIGR00035 asp_race aspartate r 42.0 20 0.00043 29.8 2.2 29 52-80 98-127 (229)
44 PRK09064 5-aminolevulinate syn 42.0 25 0.00055 30.5 2.9 45 77-122 82-129 (407)
45 PF05014 Nuc_deoxyrib_tr: Nucl 41.5 1.4E+02 0.0031 21.9 7.8 42 171-213 54-98 (113)
46 cd06502 TA_like Low-specificit 40.9 41 0.00089 27.8 3.8 35 85-120 34-68 (338)
47 COG0031 CysK Cysteine synthase 40.4 49 0.0011 30.4 4.6 58 85-149 43-106 (300)
48 PF03808 Glyco_tran_WecB: Glyc 40.2 2E+02 0.0042 23.2 8.1 77 51-133 29-110 (172)
49 cd01537 PBP1_Repressors_Sugar_ 40.0 1.6E+02 0.0035 22.2 7.0 14 62-75 72-85 (264)
50 COG3479 Phenolic acid decarbox 39.1 16 0.00035 31.6 1.2 17 153-169 97-119 (175)
51 cd00758 MoCF_BD MoCF_BD: molyb 39.0 39 0.00085 25.9 3.2 50 58-113 23-72 (133)
52 PF02875 Mur_ligase_C: Mur lig 38.6 52 0.0011 23.2 3.6 58 50-108 20-80 (91)
53 TIGR02351 thiH thiazole biosyn 38.2 60 0.0013 29.3 4.7 42 56-97 105-148 (366)
54 TIGR03576 pyridox_MJ0158 pyrid 37.9 47 0.001 29.4 4.0 40 83-122 54-94 (346)
55 PRK13532 nitrate reductase cat 37.3 84 0.0018 31.2 5.9 31 56-86 125-157 (830)
56 PRK13392 5-aminolevulinate syn 37.2 29 0.00063 30.4 2.6 45 77-122 82-129 (410)
57 TIGR00177 molyb_syn molybdenum 37.1 73 0.0016 24.9 4.5 50 58-113 31-80 (144)
58 TIGR00250 RNAse_H_YqgF RNAse H 36.6 1.3E+02 0.0028 23.7 5.9 75 67-154 4-78 (130)
59 PF09314 DUF1972: Domain of un 36.6 42 0.00092 28.4 3.3 37 71-107 2-43 (185)
60 TIGR03365 Bsubt_queE 7-cyano-7 36.5 1.1E+02 0.0024 25.9 5.8 50 57-109 60-111 (238)
61 cd00561 CobA_CobO_BtuR ATP:cor 36.4 30 0.00066 28.5 2.4 36 102-138 6-41 (159)
62 cd00609 AAT_like Aspartate ami 36.1 64 0.0014 26.0 4.2 32 100-135 60-91 (350)
63 PF00994 MoCF_biosynth: Probab 36.1 46 0.001 25.5 3.2 50 58-113 21-70 (144)
64 cd06155 eu_AANH_C_1 A group of 36.0 21 0.00045 26.3 1.3 14 99-112 6-19 (101)
65 TIGR00124 cit_ly_ligase [citra 35.9 47 0.001 30.2 3.7 38 52-90 120-160 (332)
66 cd06267 PBP1_LacI_sugar_bindin 35.7 2E+02 0.0042 21.9 7.2 29 68-96 114-142 (264)
67 cd06660 Aldo_ket_red Aldo-keto 35.6 2.5E+02 0.0054 23.1 10.0 48 76-123 16-68 (285)
68 PRK02769 histidine decarboxyla 35.3 55 0.0012 29.7 4.1 49 84-134 66-117 (380)
69 PRK05406 LamB/YcsF family prot 35.3 40 0.00087 30.3 3.1 59 76-135 72-148 (246)
70 cd06286 PBP1_CcpB_like Ligand- 35.3 2.2E+02 0.0047 22.3 7.2 36 65-100 109-144 (260)
71 PLN03075 nicotianamine synthas 35.0 97 0.0021 28.2 5.6 27 60-86 111-140 (296)
72 cd00615 Orn_deC_like Ornithine 35.0 54 0.0012 27.7 3.7 20 88-107 87-106 (294)
73 cd01542 PBP1_TreR_like Ligand- 34.9 2.2E+02 0.0047 22.2 7.1 65 68-135 112-181 (259)
74 PLN02778 3,5-epimerase/4-reduc 34.8 1.1E+02 0.0023 26.1 5.5 54 68-127 7-60 (298)
75 PF03059 NAS: Nicotianamine sy 34.8 39 0.00084 30.5 3.0 30 60-89 108-140 (276)
76 COG3976 Uncharacterized protei 34.8 23 0.0005 29.9 1.4 67 64-159 69-135 (135)
77 PRK13520 L-tyrosine decarboxyl 34.4 69 0.0015 26.9 4.3 38 84-121 60-98 (371)
78 cd01937 ribokinase_group_D Rib 34.3 33 0.00072 27.5 2.3 48 72-132 1-48 (254)
79 PF01972 SDH_sah: Serine dehyd 34.2 79 0.0017 29.4 4.9 68 66-134 45-127 (285)
80 PRK14072 6-phosphofructokinase 34.1 20 0.00043 33.6 1.1 20 103-122 8-32 (416)
81 PF12308 Noelin-1: Neurogenesi 33.4 40 0.00087 27.2 2.6 32 122-153 14-52 (101)
82 smart00852 MoCF_biosynth Proba 32.7 52 0.0011 24.9 3.0 47 58-112 22-70 (135)
83 cd00885 cinA Competence-damage 32.6 55 0.0012 26.7 3.3 50 58-113 23-72 (170)
84 PF14838 INTS5_C: Integrator c 32.6 13 0.00028 37.8 -0.4 49 124-172 251-306 (696)
85 TIGR02666 moaA molybdenum cofa 32.2 1E+02 0.0022 26.8 5.0 41 58-100 48-88 (334)
86 cd01494 AAT_I Aspartate aminot 32.1 61 0.0013 23.1 3.1 32 99-134 17-48 (170)
87 COG0318 CaiC Acyl-CoA syntheta 31.9 46 0.00099 30.5 3.0 20 102-121 176-208 (534)
88 TIGR00423 radical SAM domain p 31.7 1E+02 0.0022 26.8 5.0 39 58-96 41-79 (309)
89 COG1922 WecG Teichoic acid bio 31.4 2.4E+02 0.0051 25.5 7.3 74 52-132 90-169 (253)
90 COG0816 Predicted endonuclease 31.3 2.2E+02 0.0048 23.4 6.6 80 68-159 9-88 (141)
91 COG1313 PflX Uncharacterized F 31.1 75 0.0016 30.2 4.3 49 58-108 154-202 (335)
92 COG0205 PfkA 6-phosphofructoki 31.0 29 0.00063 32.3 1.6 19 103-122 7-27 (347)
93 PRK03321 putative aminotransfe 30.9 46 0.001 28.2 2.7 38 85-122 59-97 (352)
94 PF14734 DUF4469: Domain of un 30.8 30 0.00066 27.0 1.5 31 108-138 46-76 (102)
95 PRK12583 acyl-CoA synthetase; 30.8 51 0.0011 29.0 3.0 10 102-111 206-215 (558)
96 TIGR00696 wecB_tagA_cpsF bacte 30.5 3.2E+02 0.0069 22.7 8.2 76 52-133 30-109 (177)
97 PTZ00254 40S ribosomal protein 30.4 1.3E+02 0.0027 27.2 5.4 73 62-170 65-140 (249)
98 PLN02822 serine palmitoyltrans 30.2 49 0.0011 30.8 3.0 47 74-121 142-191 (481)
99 cd06207 CyPoR_like NADPH cytoc 29.9 2.6E+02 0.0056 25.1 7.3 15 102-116 331-346 (382)
100 PF00365 PFK: Phosphofructokin 29.8 27 0.00058 30.9 1.1 18 103-121 5-24 (282)
101 TIGR03812 tyr_de_CO2_Arch tyro 29.7 70 0.0015 27.0 3.5 51 83-134 59-113 (373)
102 PF11868 DUF3388: Protein of u 29.2 62 0.0013 28.7 3.2 89 56-158 42-144 (192)
103 PRK08133 O-succinylhomoserine 29.2 1E+02 0.0023 27.6 4.7 46 76-122 54-99 (390)
104 COG1794 RacX Aspartate racemas 28.9 39 0.00083 30.4 2.0 51 52-134 98-149 (230)
105 PF03721 UDPG_MGDP_dh_N: UDP-g 28.7 64 0.0014 26.5 3.1 41 71-121 1-41 (185)
106 cd01829 SGNH_hydrolase_peri2 S 28.5 1.5E+02 0.0032 22.8 4.9 57 72-131 1-66 (200)
107 PRK09288 purT phosphoribosylgl 28.5 2.9E+02 0.0062 24.1 7.2 92 69-178 11-118 (395)
108 PRK13762 tRNA-modifying enzyme 28.3 4.4E+02 0.0096 23.7 9.3 68 70-147 130-198 (322)
109 TIGR02667 moaB_proteo molybden 28.0 61 0.0013 26.2 2.8 46 65-113 31-77 (163)
110 PF10727 Rossmann-like: Rossma 28.0 71 0.0015 25.4 3.1 32 66-104 6-37 (127)
111 TIGR02493 PFLA pyruvate format 28.0 1.2E+02 0.0026 24.6 4.5 48 58-107 51-103 (235)
112 TIGR03470 HpnH hopanoid biosyn 27.9 1.1E+02 0.0025 26.9 4.7 37 63-101 66-102 (318)
113 cd02763 MopB_2 The MopB_2 CD i 27.8 1.4E+02 0.003 29.9 5.7 47 56-107 79-126 (679)
114 COG1669 Predicted nucleotidylt 27.8 48 0.001 26.2 2.1 16 63-78 16-32 (97)
115 COG5039 Exopolysaccharide bios 27.8 1.8E+02 0.0039 27.9 6.1 29 124-155 116-144 (339)
116 cd01822 Lysophospholipase_L1_l 27.6 1.6E+02 0.0035 21.9 4.8 34 99-132 35-72 (177)
117 PF13733 Glyco_transf_7N: N-te 27.5 19 0.0004 30.0 -0.2 10 184-193 114-123 (136)
118 cd06359 PBP1_Nba_like Type I p 27.5 1.8E+02 0.004 24.2 5.6 64 66-133 130-195 (333)
119 PRK03604 moaC bifunctional mol 27.3 61 0.0013 29.6 3.0 51 58-113 179-229 (312)
120 PRK03670 competence damage-ind 27.3 62 0.0014 28.4 2.9 32 81-112 42-73 (252)
121 PRK08308 acyl-CoA synthetase; 27.2 64 0.0014 27.6 2.9 10 102-111 106-115 (414)
122 cd02762 MopB_1 The MopB_1 CD i 27.1 1.6E+02 0.0036 27.3 5.8 24 56-79 75-100 (539)
123 PRK08361 aspartate aminotransf 27.1 71 0.0015 27.7 3.2 20 101-120 95-114 (391)
124 PRK07324 transaminase; Validat 26.9 56 0.0012 28.5 2.6 24 99-122 80-103 (373)
125 cd02750 MopB_Nitrate-R-NarG-li 26.7 1.3E+02 0.0028 27.5 4.9 33 56-88 91-126 (461)
126 cd06287 PBP1_LacI_like_8 Ligan 26.6 3.6E+02 0.0077 22.0 7.5 14 65-78 113-126 (269)
127 COG1022 FAA1 Long-chain acyl-C 26.5 30 0.00064 34.3 0.9 9 103-111 197-205 (613)
128 TIGR01274 ACC_deam 1-aminocycl 26.5 2.2E+02 0.0049 25.0 6.2 52 85-136 51-102 (337)
129 PRK00977 exodeoxyribonuclease 26.4 53 0.0012 24.5 2.1 38 144-181 13-52 (80)
130 PF13377 Peripla_BP_3: Peripla 25.8 1.6E+02 0.0036 21.3 4.5 26 65-90 4-30 (160)
131 TIGR01822 2am3keto_CoA 2-amino 25.8 1E+02 0.0022 26.4 3.9 47 75-122 72-121 (393)
132 PRK06555 pyrophosphate--fructo 25.7 36 0.00078 32.3 1.3 18 103-121 8-27 (403)
133 KOG4435 Predicted lipid kinase 25.5 89 0.0019 31.2 3.9 49 86-135 103-152 (535)
134 PRK06256 biotin synthase; Vali 25.4 3.8E+02 0.0082 23.3 7.4 65 57-122 95-161 (336)
135 cd00886 MogA_MoaB MogA_MoaB fa 25.3 88 0.0019 24.6 3.2 33 81-113 42-75 (152)
136 PRK07824 O-succinylbenzoic aci 25.1 33 0.00072 28.6 0.8 9 103-111 41-49 (358)
137 PRK13393 5-aminolevulinate syn 25.0 81 0.0018 27.7 3.2 20 154-173 183-205 (406)
138 PRK07777 aminotransferase; Val 24.9 49 0.0011 28.6 1.8 21 101-121 87-107 (387)
139 PRK07638 acyl-CoA synthetase; 24.8 34 0.00073 29.7 0.8 10 102-111 148-157 (487)
140 PF02609 Exonuc_VII_S: Exonucl 24.8 43 0.00093 22.7 1.2 35 147-181 5-41 (53)
141 cd06152 YjgF_YER057c_UK114_lik 24.6 52 0.0011 25.1 1.8 15 98-112 8-22 (114)
142 PRK04020 rps2P 30S ribosomal p 24.4 2.7E+02 0.0058 24.3 6.2 71 66-170 63-136 (204)
143 PF06506 PrpR_N: Propionate ca 24.3 73 0.0016 25.5 2.6 36 56-92 64-99 (176)
144 cd02754 MopB_Nitrate-R-NapA-li 24.1 2.2E+02 0.0049 26.3 6.0 34 56-89 76-111 (565)
145 PRK05851 long-chain-fatty-acid 24.1 35 0.00075 30.4 0.8 8 103-110 158-165 (525)
146 cd00368 Molybdopterin-Binding 23.9 2.4E+02 0.0052 23.9 5.7 51 56-108 77-129 (374)
147 KOG2174 Leptin receptor gene-r 23.9 44 0.00096 28.1 1.3 44 58-105 65-110 (131)
148 PRK05852 acyl-CoA synthetase; 23.8 82 0.0018 27.9 3.0 11 101-111 180-190 (534)
149 cd01563 Thr-synth_1 Threonine 23.8 3.6E+02 0.0077 23.2 6.9 59 83-149 53-114 (324)
150 cd01841 NnaC_like NnaC (CMP-Ne 23.5 1.5E+02 0.0032 22.3 4.0 77 71-154 1-84 (174)
151 cd00763 Bacterial_PFK Phosphof 23.4 42 0.0009 30.4 1.2 19 103-122 5-25 (317)
152 PRK09088 acyl-CoA synthetase; 23.1 85 0.0018 27.2 3.0 10 102-111 140-149 (488)
153 PLN02564 6-phosphofructokinase 23.0 49 0.0011 32.3 1.6 40 64-122 71-112 (484)
154 PRK06145 acyl-CoA synthetase; 23.0 86 0.0019 27.2 3.0 9 103-111 155-163 (497)
155 TIGR02188 Ac_CoA_lig_AcsA acet 22.9 38 0.00083 30.9 0.9 10 102-111 241-250 (625)
156 PRK14064 exodeoxyribonuclease 22.7 93 0.002 23.1 2.7 30 142-171 7-36 (75)
157 TIGR02275 DHB_AMP_lig 2,3-dihy 22.5 77 0.0017 28.0 2.6 10 102-111 188-197 (527)
158 PRK14071 6-phosphofructokinase 22.4 48 0.001 30.5 1.4 19 103-122 9-29 (360)
159 PRK08279 long-chain-acyl-CoA s 22.3 84 0.0018 28.5 2.9 9 103-111 205-213 (600)
160 cd06274 PBP1_FruR Ligand bindi 22.3 2.2E+02 0.0047 22.4 4.9 32 67-98 113-144 (264)
161 COG0113 HemB Delta-aminolevuli 22.3 1E+02 0.0022 29.3 3.5 33 47-79 46-84 (330)
162 PRK14068 exodeoxyribonuclease 22.3 93 0.002 23.3 2.7 38 144-181 9-48 (76)
163 PRK07445 O-succinylbenzoic aci 22.2 41 0.00088 29.9 0.9 10 102-111 125-134 (452)
164 PRK11064 wecC UDP-N-acetyl-D-m 22.1 88 0.0019 28.7 3.0 29 70-105 3-31 (415)
165 TIGR02478 6PF1K_euk 6-phosphof 22.0 46 0.001 33.7 1.3 18 103-121 5-24 (745)
166 PRK02948 cysteine desulfurase; 21.9 1.2E+02 0.0027 26.0 3.7 36 86-121 46-82 (381)
167 PRK15405 ethanolamine utilizat 21.9 1.6E+02 0.0034 26.5 4.4 31 52-83 15-46 (217)
168 PTZ00216 acyl-CoA synthetase; 21.8 42 0.00091 31.8 0.9 9 103-111 270-278 (700)
169 cd00616 AHBA_syn 3-amino-5-hyd 21.8 1.3E+02 0.0028 25.0 3.7 20 154-173 112-131 (352)
170 PLN02651 cysteine desulfurase 21.8 1.1E+02 0.0025 26.2 3.5 47 87-133 47-94 (364)
171 PF13884 Peptidase_S74: Chaper 21.7 54 0.0012 21.9 1.2 17 76-92 40-56 (58)
172 PRK03244 argD acetylornithine 21.7 98 0.0021 26.9 3.1 42 85-126 87-130 (398)
173 PRK09613 thiH thiamine biosynt 21.7 1.7E+02 0.0036 28.2 4.9 41 56-96 117-159 (469)
174 cd02759 MopB_Acetylene-hydrata 21.6 2.4E+02 0.0052 25.8 5.7 52 56-108 79-133 (477)
175 TIGR03610 RutC pyrimidine util 21.6 50 0.0011 25.6 1.2 42 97-151 22-63 (127)
176 TIGR02482 PFKA_ATP 6-phosphofr 21.6 48 0.001 29.9 1.2 19 103-122 4-24 (301)
177 PRK14045 1-aminocyclopropane-1 21.5 2E+02 0.0044 25.3 5.0 53 83-135 53-105 (329)
178 PRK06334 long chain fatty acid 21.5 91 0.002 28.2 2.9 9 103-111 189-197 (539)
179 cd06298 PBP1_CcpA_like Ligand- 21.5 4E+02 0.0086 20.7 6.9 11 68-78 114-124 (268)
180 PRK07769 long-chain-fatty-acid 21.5 90 0.002 28.7 2.9 9 103-111 186-194 (631)
181 TIGR02483 PFK_mixed phosphofru 21.4 48 0.001 30.1 1.2 18 103-121 4-23 (324)
182 PRK00950 histidinol-phosphate 21.3 83 0.0018 26.6 2.5 17 157-173 170-186 (361)
183 PRK05857 acyl-CoA synthetase; 21.3 44 0.00094 29.9 0.9 10 103-112 175-184 (540)
184 PF00175 NAD_binding_1: Oxidor 21.3 1.6E+02 0.0034 20.5 3.5 58 58-115 41-107 (109)
185 PLN02330 4-coumarate--CoA liga 21.2 43 0.00093 29.8 0.8 9 103-111 190-198 (546)
186 PRK09082 methionine aminotrans 21.2 1.1E+02 0.0024 26.6 3.3 40 82-121 70-113 (386)
187 cd00009 AAA The AAA+ (ATPases 21.1 2.7E+02 0.0059 18.8 7.3 118 66-185 15-149 (151)
188 TIGR01437 selA_rel uncharacter 20.9 95 0.0021 27.4 2.9 25 100-124 61-85 (363)
189 PLN02861 long-chain-fatty-acid 20.9 44 0.00096 31.4 0.9 9 103-111 226-234 (660)
190 cd00764 Eukaryotic_PFK Phospho 20.9 53 0.0011 33.7 1.4 18 103-121 8-27 (762)
191 cd00764 Eukaryotic_PFK Phospho 20.8 53 0.0012 33.6 1.5 19 103-122 394-414 (762)
192 PRK11041 DNA-binding transcrip 20.6 2.1E+02 0.0045 23.1 4.6 34 65-98 147-180 (309)
193 PRK05764 aspartate aminotransf 20.5 1E+02 0.0023 26.4 3.0 23 100-122 92-114 (393)
194 PRK06939 2-amino-3-ketobutyrat 20.5 1.1E+02 0.0023 26.0 3.0 38 84-122 88-125 (397)
195 PRK01278 argD acetylornithine 20.4 2.2E+02 0.0048 24.7 5.0 35 100-134 89-127 (389)
196 TIGR00708 cobA cob(I)alamin ad 20.4 1.2E+02 0.0026 25.6 3.2 76 102-178 9-117 (173)
197 PRK03584 acetoacetyl-CoA synth 20.4 47 0.001 30.7 0.9 10 102-111 268-277 (655)
198 cd00408 DHDPS-like Dihydrodipi 20.4 5.2E+02 0.011 21.7 11.6 119 58-186 20-157 (281)
199 cd06451 AGAT_like Alanine-glyo 20.1 1.3E+02 0.0028 25.3 3.4 36 85-120 34-71 (356)
200 PRK09920 acetyl-CoA:acetoacety 20.0 1.2E+02 0.0026 26.3 3.3 37 95-132 13-51 (219)
No 1
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.10 E-value=1.3e-09 Score=90.76 Aligned_cols=139 Identities=22% Similarity=0.193 Sum_probs=96.1
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHH
Q 028143 68 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQEL 146 (213)
Q Consensus 68 ~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~k-Qp~Esrel 146 (213)
.-.+.|||.|||+..=-..+..+-+.+.|+..|..|++.+|.|+.+++.+|||++ +...+ +|||..|++ .|++.+++
T Consensus 42 ~~~~~iaIvGsR~~s~~g~~~a~~l~~~l~~~g~~vvSGlA~GiD~~ah~~al~~-~g~tI-aVl~~gl~~~yP~~n~~l 119 (212)
T PF02481_consen 42 NKQPSIAIVGSRNPSEYGLKFAKKLARELAKAGIVVVSGLAKGIDAAAHRGALDA-GGPTI-AVLACGLDNIYPKENREL 119 (212)
T ss_dssp GGS-EEEEE--SS--HHHHHHHHHHHHHHHHHT-EEEE---TTHHHHHHHHHTTT----EE-EE-SS-TTS-SSGGGHHH
T ss_pred ccCceEEEEcCCCCCHHHHHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHc-cCCEE-EEECCCcccccchhhHHH
Confidence 3478999999999999999999999999999999999999999999999999999 44444 457999987 59999999
Q ss_pred HHHhh-h----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEE
Q 028143 147 LAKVK-T----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL 209 (213)
Q Consensus 147 Le~V~-~----lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTL 209 (213)
.+++. + +=|-|-... |....-.-.|+=|..-++.+|.......---+.|++.|.+++|-|-.
T Consensus 120 ~~~i~~~~glliSe~~p~~~-~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~gr~v~~ 186 (212)
T PF02481_consen 120 AERILDEGGLLISEYPPGTK-PSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQGRPVFA 186 (212)
T ss_dssp HHHHHHTT-EEEE-S-TT-----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHHT--EEE
T ss_pred HHHHHhcCcEEEeCCCCCCC-cccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHcCCeEEE
Confidence 99998 4 446565554 66666667899999999999999987777778999999999997754
No 2
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=98.48 E-value=4.3e-06 Score=70.47 Aligned_cols=136 Identities=20% Similarity=0.193 Sum_probs=109.2
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHHH
Q 028143 71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLAK 149 (213)
Q Consensus 71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQ-p~EsrelLe~ 149 (213)
+.|||.|||+..--...+.+-+++.|+..|-.|+|-||-|+-+++.|||+.+.. .--.|||..|++- |++.+++.++
T Consensus 45 ~~iaIvGsR~~s~~~~~~a~~l~~~l~~~g~~IVSG~A~GiD~~ah~~al~~~g--~tIaVl~~gld~~yp~~n~~l~~~ 122 (220)
T TIGR00732 45 RKVAIVGTRRPTKYGERWTRKLAEELAKNGVTIVSGLALGIDGIAHKAALKVNG--RTIAVLGTGLDQIYPRQNSKLAAK 122 (220)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHHhCCCEEEcCchhhHHHHHHHHHHHcCC--CEEEEECCCCccCCchhhHHHHHH
Confidence 789999999998889999999999999999999999999999999999999832 3335899999886 7889999998
Q ss_pred hhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeee-CchHHHHHHHHHhhccCeeEEe
Q 028143 150 VKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTLF 210 (213)
Q Consensus 150 V~~-----lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFH-DS~tLl~tc~eAe~~~KvVTLf 210 (213)
+.. +=|-|...+ |....-..-|+=|..-++-+|-|--= .|-| |.|++.|.+++|-|-.+
T Consensus 123 i~~~gglliSe~p~~~~-~~~~~f~~RNriia~ls~~vivve~~~~sGt-l~ta~~A~~~gr~v~~~ 187 (220)
T TIGR00732 123 IAENGGLLLSEYPPDTK-PIKYNFPKRNRIISGLSRAVLVVEAPLKSGA-LITARYALEQGREVFAY 187 (220)
T ss_pred HHHcCCEEEEecCCCCC-CCcccHHHHHHHHHHhcCEEEEEECCCCCch-HHHHHHHHHhCCcEEEE
Confidence 863 446666443 54444456788888888888877643 4656 57899999999977544
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=97.71 E-value=0.00045 Score=55.66 Aligned_cols=121 Identities=21% Similarity=0.174 Sum_probs=86.5
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHh
Q 028143 71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKV 150 (213)
Q Consensus 71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelLe~V 150 (213)
++||++|||+.+=-+++..+-+.+.|+..|+.|++=|+.|.=.|+-|||+++ .... .=|||+.+.. +.+ .+
T Consensus 2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~Gg~~GlM~a~a~ga~~~-gg~v-iGVlp~~l~~-~~~---~~--- 72 (159)
T TIGR00725 2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILINGGRTGVMEAVSKGAREA-GGLV-VGILPDEDFA-GNP---YL--- 72 (159)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEcCCchhHHHHHHHHHHHC-CCeE-EEECChhhcc-CCC---Cc---
Confidence 7899999999988999999999999999999999978899999999999988 3322 3368988741 100 00
Q ss_pred hhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEEee
Q 028143 151 KTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFY 211 (213)
Q Consensus 151 ~~lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTLfy 211 (213)
.++ .+ .+.+ ..| |+-++..+|=+|.+. -=+=||-|.. +|-.++|-|-+++
T Consensus 73 -~~~-i~-~~~~----~~R--k~~m~~~sda~Ivlp-GG~GTL~E~~-~a~~~~kpv~~l~ 122 (159)
T TIGR00725 73 -TIK-VK-TGMN----FAR--NFILVRSADVVVSVG-GGYGTAIEIL-GAYALGGPVVVLR 122 (159)
T ss_pred -eEE-EE-CCCc----chH--HHHHHHHCCEEEEcC-CchhHHHHHH-HHHHcCCCEEEEE
Confidence 000 01 1111 113 888999999999987 4566765554 4556788776653
No 4
>PRK10736 hypothetical protein; Provisional
Probab=97.35 E-value=0.0043 Score=57.29 Aligned_cols=135 Identities=19% Similarity=0.167 Sum_probs=104.2
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHHHHH
Q 028143 71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELLAK 149 (213)
Q Consensus 71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~k-Qp~EsrelLe~ 149 (213)
+.|||.|||++.---....+-+++.|+..|-.|+.-+|-|.-+++-+|||.+..+ --.||+-.|++ -|+|.+++.++
T Consensus 108 ~~iaiVGsR~~s~yg~~~~~~l~~~la~~g~~IVSGlA~GiD~~AH~~aL~~~g~--TIaVlg~Gld~~YP~~n~~L~~~ 185 (374)
T PRK10736 108 PQLAVVGSRAHSWYGERWGRLFCEELAKNGLTITSGLARGIDGVAHRAALQAGGK--TIAVLGNGLENIYPRRHARLAES 185 (374)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECcchhhHHHHHHHHHHHcCCC--EEEEECCCCCccCCHhHHHHHHH
Confidence 6799999999999999999999999999887666666799999999999998432 34489999987 58899999999
Q ss_pred hhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeee-CchHHHHHHHHHhhccCeeEE
Q 028143 150 VKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTL 209 (213)
Q Consensus 150 V~~-----lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFH-DS~tLl~tc~eAe~~~KvVTL 209 (213)
+.. +=|-|-+-+ |...---..|+=|-.-++-+|-.--- .|-+ |-|++.|-+++|-|--
T Consensus 186 I~~~~G~liSEyp~~~~-p~~~~Fp~RNRIIagLS~~viVvEA~~kSGs-liTA~~Al~~gR~Vfa 249 (374)
T PRK10736 186 IIEQGGALVSEFPLDTP-PLAANFPRRNRIISGLSKGVLVVEAALRSGS-LVTARCALEQGRDVFA 249 (374)
T ss_pred HHhcCCEEEECCCCCCC-CChhhhhHhhhHHHHhCCeEEEEEeCCCCch-HHHHHHHHHhCCeEEE
Confidence 833 346666532 32333334688888888888776444 4555 6699999999998754
No 5
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=95.83 E-value=0.27 Score=45.35 Aligned_cols=130 Identities=21% Similarity=0.159 Sum_probs=100.2
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeE-eecccccCC-ChhHHHHHH
Q 028143 71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQSLKKQ-PPESQELLA 148 (213)
Q Consensus 71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTV-iLPQSL~kQ-p~EsrelLe 148 (213)
+.+||.|||+++-.-.+..+.++..|+..|--|++-+|-|.-+++-.+||.+. -.|| ||.-.+++= |++-+.+.+
T Consensus 112 ~~vaIVGsR~~S~~g~~~~~~~a~~L~~~g~~IvSGlA~GID~~AH~aaL~~~---G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIVGSRKPSKYGLDYTRDLAEYLAQNGITIVSGLARGIDTEAHKAALNAG---GKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEEeCCCCCHhHHHHHHHHHHHHHhCCeEEEecCcceecHHHHHHHHHcC---CcEEEEEcCCCCccCChhhHHHHH
Confidence 68999999999999999999999999999999999999999999999999994 3365 677777774 667777777
Q ss_pred HhhhH----hcCCC-----CCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhccCeeEE
Q 028143 149 KVKTV----IEKPH-----NDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL 209 (213)
Q Consensus 149 ~V~~l----vE~pe-----nD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~KvVTL 209 (213)
++..- =|.|- .-+.|- =|+=|-.-++=+++.-.=---==|-||+.|-+|++.|-.
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~------RNRiIagLS~gvlVvEA~~kSGSLiTA~~AleqgR~Vfa 252 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPR------RNRLIAGLSDGVLVVEAGLKSGSLITAKYALEQGRDVFA 252 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchH------HHHHHHHhcCceEEEecCcccccHHHHHHHHHcCCeeEE
Confidence 76542 24443 333332 377777788888887554333335689999999998753
No 6
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=95.04 E-value=0.67 Score=38.67 Aligned_cols=142 Identities=17% Similarity=0.117 Sum_probs=74.4
Q ss_pred ceEEEeccccc------------chhHHHHHHHHHHHHHHhcCceeecCCCCchH--HHHHhhhhhcCCCc-eeEeeccc
Q 028143 71 RAIGFFGTRNM------------GFMHQELIEILSYALVITKNHIYTSGASGTNA--AVIRGALRAERPDL-LTVILPQS 135 (213)
Q Consensus 71 rria~lGsRhv------------~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa--AvIRGalrae~p~l-LTViLPQS 135 (213)
|+|+|-|-|.. .++-..|-+.+..++-.+=-++||+||-|+=. |-+--.|+.+-|++ |.+++|=.
T Consensus 2 ~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf~ 81 (177)
T PF06908_consen 2 KRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPFE 81 (177)
T ss_dssp -EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESSB
T ss_pred eEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEccc
Confidence 56777776654 22445555555555556667999999999864 44555677888865 56777731
Q ss_pred --ccCCChhHHHHHHHhhhHh---cCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchH-HHHHHHHHhhc----cC
Q 028143 136 --LKKQPPESQELLAKVKTVI---EKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRL-LMETCQEAKNL----RK 205 (213)
Q Consensus 136 --L~kQp~EsrelLe~V~~lv---E~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~t-Ll~tc~eAe~~----~K 205 (213)
=++=+++.|+.+.+++.-. ..-.+..---+..-+-.|+-++.+++.+|++=--+.+- ---+++.|+.. +.
T Consensus 82 ~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~~~~y 161 (177)
T PF06908_consen 82 NQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQEQKGY 161 (177)
T ss_dssp -TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHHHH--
T ss_pred chhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhhccCC
Confidence 1233568898888885432 22222222235667789999999999999987666531 12233444443 34
Q ss_pred eeEEeec
Q 028143 206 IVTLFYL 212 (213)
Q Consensus 206 vVTLfy~ 212 (213)
.+.++-+
T Consensus 162 ~i~~I~~ 168 (177)
T PF06908_consen 162 PIDLIDP 168 (177)
T ss_dssp -EEEE-H
T ss_pred eEEEecH
Confidence 5555444
No 7
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=93.71 E-value=0.2 Score=41.51 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=50.5
Q ss_pred ceEEEecccccchh--HHHHHHHHHHHHHHhcCceeecCC-CCchHHHHHhhhhhcCCCceeEeeccccc
Q 028143 71 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLK 137 (213)
Q Consensus 71 rria~lGsRhv~~~--hq~LIEllsyAlvl~gn~i~TSGA-~GtNaAvIRGalrae~p~lLTViLPQSL~ 137 (213)
|+||++|+-..+.- +.+..+-+.+.|+..|+.++|-|+ .|.=-|+-|||+++. - ...=|+|..|.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g-G-~viGi~p~~l~ 68 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG-G-TAVGVNPSGLF 68 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC-C-eEEEecchhhh
Confidence 58999988665333 445677788999999999999997 899999999998872 2 23347888774
No 8
>PRK13660 hypothetical protein; Provisional
Probab=92.02 E-value=5.7 Score=33.73 Aligned_cols=139 Identities=20% Similarity=0.172 Sum_probs=87.6
Q ss_pred ceEEEecccccch------------hHHHHHHHHHHHHHHhcCceeecCCCCch--HHHHHhhhhhcCCCc-eeEeeccc
Q 028143 71 RAIGFFGTRNMGF------------MHQELIEILSYALVITKNHIYTSGASGTN--AAVIRGALRAERPDL-LTVILPQS 135 (213)
Q Consensus 71 rria~lGsRhv~~------------~hq~LIEllsyAlvl~gn~i~TSGA~GtN--aAvIRGalrae~p~l-LTViLPQS 135 (213)
++++|-|-|..++ +-..|-+-|..++-.+=-+++||||-|+- ||=+--.|+.+-|++ |-+++|=.
T Consensus 2 k~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~ 81 (182)
T PRK13660 2 KRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFE 81 (182)
T ss_pred eEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCcc
Confidence 6788888888877 33333334444444455689999999986 455566678877886 66677732
Q ss_pred c--cCCChhHHHHHHHhhhHh---cCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchH---HHHHHHHHhhc----
Q 028143 136 L--KKQPPESQELLAKVKTVI---EKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRL---LMETCQEAKNL---- 203 (213)
Q Consensus 136 L--~kQp~EsrelLe~V~~lv---E~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~t---Ll~tc~eAe~~---- 203 (213)
= ++=+++.|+.+..+++-+ ..-....-.=+.--+.=|+-+|.+++-+|+| -|.+. .--+.+.|+..
T Consensus 82 ~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~--YD~e~~Ggt~y~~~~A~k~~~~~ 159 (182)
T PRK13660 82 EHGENWNEANQEKLANILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLV--YDEENEGSPKYFYEAAKKKQEKE 159 (182)
T ss_pred chhhcCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEE--EcCCCCCChHHHHHHHHHhhhcc
Confidence 1 233678888888775532 1111111101333455699999999998875 45332 44677888877
Q ss_pred cCeeEEee
Q 028143 204 RKIVTLFY 211 (213)
Q Consensus 204 ~KvVTLfy 211 (213)
+.-|.++=
T Consensus 160 ~y~i~~I~ 167 (182)
T PRK13660 160 DYPLDLIT 167 (182)
T ss_pred CceEEEeC
Confidence 77666553
No 9
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=87.16 E-value=2.4 Score=36.05 Aligned_cols=71 Identities=34% Similarity=0.320 Sum_probs=54.7
Q ss_pred hcCCceEEEe-cccc--cchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC
Q 028143 67 QQGPRAIGFF-GTRN--MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ 139 (213)
Q Consensus 67 q~g~rria~l-GsRh--v~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQ 139 (213)
+.+.++|+++ ||.+ .+--..++-.=+.++++.-|+-++|-|..|+=.|+-|||+++ -...+=|+|.++..|
T Consensus 11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~GiMea~~~gA~~~--gg~~vGi~p~~~~~~ 84 (205)
T COG1611 11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGPGVMEAVARGALEA--GGLVVGILPGLLHEQ 84 (205)
T ss_pred ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCchhhhhHHHHHHHHc--CCeEEEecCCCchhh
Confidence 4566777765 5554 444356777778999999999999999999999999999965 344555788887766
No 10
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=75.19 E-value=11 Score=31.88 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHH
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 98 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl 98 (213)
+.+.+..+...|.+.|.|.|.- |++|..+++++.++-..
T Consensus 45 i~~~i~~~~~~gi~~I~~tGGE--Pll~~~l~~iv~~l~~~ 83 (302)
T TIGR02668 45 IERIVRVASEFGVRKVKITGGE--PLLRKDLIEIIRRIKDY 83 (302)
T ss_pred HHHHHHHHHHcCCCEEEEECcc--cccccCHHHHHHHHHhC
Confidence 4444445567799999999954 99999999999987654
No 11
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=71.99 E-value=28 Score=33.55 Aligned_cols=115 Identities=21% Similarity=0.231 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHhcCceeecCCC--CchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHhhh-HhcCCCCC
Q 028143 84 MHQELIEILSYALVITKNHIYTSGAS--GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKT-VIEKPHND 160 (213)
Q Consensus 84 ~hq~LIEllsyAlvl~gn~i~TSGA~--GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelLe~V~~-lvE~penD 160 (213)
--+.+.+++.||+...=|||=|-=.= |...-.++=||.. .+ .=+|.|---|.--|-++++..++..+ =+|+=.-|
T Consensus 32 d~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~-~~-Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~D 109 (391)
T COG1453 32 DEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKD-GY-REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTD 109 (391)
T ss_pred cHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhh-cc-cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCc
Confidence 57889999999999999999998775 8888888888876 44 44454443333344455555555443 34555555
Q ss_pred CCChHHHHhhhh-----------HHHHhhhce-----eeeEeeeCchHHHHHHHHH
Q 028143 161 HLPLIEASRLCN-----------MDIISHVQQ-----VICFAFHDSRLLMETCQEA 200 (213)
Q Consensus 161 ~LpL~eAS~lCN-----------~eIisr~qQ-----lIcFAFHDS~tLl~tc~eA 200 (213)
++-.-----|=+ -|.+.+.++ -+.|.||||--++...-.|
T Consensus 110 y~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a 165 (391)
T COG1453 110 YIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDA 165 (391)
T ss_pred hhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhc
Confidence 554322222211 233333332 4789999998877654433
No 12
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=71.75 E-value=5.4 Score=34.90 Aligned_cols=48 Identities=19% Similarity=0.091 Sum_probs=37.3
Q ss_pred EEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh
Q 028143 73 IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 73 ia~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 122 (213)
..-+|..+.| .|.++-|.++..+-. .+-++|+|++..|.++|++.++.
T Consensus 54 ~~~~~~~~~~-~~~~l~~~lA~~~g~-~~~~~~~g~t~a~~~al~~l~~~ 101 (387)
T PRK09331 54 PGRLDQIKKP-PIADFHEDLAEFLGM-DEARVTHGAREGKFAVMHSLCKK 101 (387)
T ss_pred ccccccccCh-HHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHhcCC
Confidence 4455666666 488999988887654 57899999999999999998754
No 13
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=69.78 E-value=32 Score=30.10 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=44.1
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhc--CceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCCh
Q 028143 64 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK--NHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPP 141 (213)
Q Consensus 64 aIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~g--n~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~ 141 (213)
.+-..|.+.|-|.|.- |++|..+.|++.|+-...| .--+|+.++-.+ - .--.|....-+.+.| ||+--.+
T Consensus 56 ~~~~~Gv~~I~~tGGE--Pllr~dl~~li~~i~~~~~l~~i~itTNG~ll~-~-~~~~L~~aGl~~v~I----SlDs~~~ 127 (329)
T PRK13361 56 AFTELGVRKIRLTGGE--PLVRRGCDQLVARLGKLPGLEELSLTTNGSRLA-R-FAAELADAGLKRLNI----SLDTLRP 127 (329)
T ss_pred HHHHCCCCEEEEECcC--CCccccHHHHHHHHHhCCCCceEEEEeChhHHH-H-HHHHHHHcCCCeEEE----EeccCCH
Confidence 3445799999999965 9999999999999876655 222343333222 1 222333334455555 5555444
Q ss_pred hHH
Q 028143 142 ESQ 144 (213)
Q Consensus 142 Esr 144 (213)
|..
T Consensus 128 e~~ 130 (329)
T PRK13361 128 ELF 130 (329)
T ss_pred HHh
Confidence 443
No 14
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=69.67 E-value=8.8 Score=28.20 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=39.7
Q ss_pred hhHHHHH-HHHHhcCCceEEEecccccchh---HHHHHHHHHHHHHHhc-CceeecCCCCchHHH
Q 028143 56 VDYLQEL-LAIQQQGPRAIGFFGTRNMGFM---HQELIEILSYALVITK-NHIYTSGASGTNAAV 115 (213)
Q Consensus 56 ~D~lqEL-aaIQq~g~rria~lGsRhv~~~---hq~LIEllsyAlvl~g-n~i~TSGA~GtNaAv 115 (213)
.+.+.++ ..+++.+.+.|.|.|.- |++ ...+.|++.++--..+ ..++.|.++..+...
T Consensus 38 ~~~~~~ii~~~~~~~~~~i~l~GGE--Pll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~~~~~ 100 (139)
T PF13353_consen 38 EEIIEEIIEELKNYGIKGIVLTGGE--PLLHENYDELLEILKYIKEKFPKKIIILTNGYTLDELL 100 (139)
T ss_dssp HHHHHHHCHHHCCCCCCEEEEECST--GGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--HHHHH
T ss_pred chhhhhhhhHHhcCCceEEEEcCCC--eeeeccHhHHHHHHHHHHHhCCCCeEEEECCCchhHHH
Confidence 3455554 45557899999999955 999 7899999999988888 344555555554443
No 15
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=68.71 E-value=41 Score=24.77 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=28.8
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCce
Q 028143 64 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI 103 (213)
Q Consensus 64 aIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i 103 (213)
.+.+.|.++|+++++...+ ..+..++-+..++...|-.+
T Consensus 118 ~l~~~~~~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (269)
T cd01391 118 YLAEKGWKRVALIYGDDGA-YGRERLEGFKAALKKAGIEV 156 (269)
T ss_pred HHHHhCCceEEEEecCCcc-hhhHHHHHHHHHHHhcCcEE
Confidence 3567789999999987763 46677888888887665443
No 16
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=66.08 E-value=12 Score=26.61 Aligned_cols=51 Identities=27% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHhhhhhcCCCceeEeecccccCCChhHHHHHHHhhh-HhcCCCCCCCChHHHHhh
Q 028143 116 IRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKT-VIEKPHNDHLPLIEASRL 170 (213)
Q Consensus 116 IRGalrae~p~lLTViLPQSL~kQp~EsrelLe~V~~-lvE~penD~LpL~eAS~l 170 (213)
++-.+..+++|++.|.-|-+. ..+-....|+.=.| ++|||--. ++.++.+|
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~--h~~~~~~~l~~g~~v~~EKP~~~--~~~~~~~l 105 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSS--HAEIAKKALEAGKHVLVEKPLAL--TLEEAEEL 105 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGG--HHHHHHHHHHTTSEEEEESSSSS--SHHHHHHH
T ss_pred HHHHHHhhcCCEEEEecCCcc--hHHHHHHHHHcCCEEEEEcCCcC--CHHHHHHH
Confidence 666777788999999998854 33444445544444 57998643 45555444
No 17
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=60.07 E-value=54 Score=28.54 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHHhc-CceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 028143 66 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK-NHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ 144 (213)
Q Consensus 66 Qq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~g-n~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Esr 144 (213)
.+.|.+.|.|.| -=|++|.+++|++.|+--..= -.|.|+| +..+--.++- |.....+.+.| ||+--.+|..
T Consensus 50 ~~~g~~~v~~~G--GEPll~~~~~~ii~~~~~~g~~~~l~TNG-~ll~~e~~~~-L~~~g~~~v~i----Sldg~~~e~~ 121 (358)
T TIGR02109 50 AELGVLQLHFSG--GEPLARPDLVELVAHARRLGLYTNLITSG-VGLTEARLDA-LADAGLDHVQL----SFQGVDEALA 121 (358)
T ss_pred HhcCCcEEEEeC--ccccccccHHHHHHHHHHcCCeEEEEeCC-ccCCHHHHHH-HHhCCCCEEEE----eCcCCCHHHH
Confidence 446889999998 468999999999999865421 1355554 4444444543 33325555665 5555555543
Q ss_pred H
Q 028143 145 E 145 (213)
Q Consensus 145 e 145 (213)
+
T Consensus 122 d 122 (358)
T TIGR02109 122 D 122 (358)
T ss_pred H
Confidence 3
No 18
>PLN03032 serine decarboxylase; Provisional
Probab=59.50 E-value=21 Score=32.69 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHhcCCceEEEeccccc-----chhHHHHHHHHHHHHHHhcC-c--eeecCCCCchHHHHHhhhhhcCCCc
Q 028143 56 VDYLQELLAIQQQGPRAIGFFGTRNM-----GFMHQELIEILSYALVITKN-H--IYTSGASGTNAAVIRGALRAERPDL 127 (213)
Q Consensus 56 ~D~lqELaaIQq~g~rria~lGsRhv-----~~~hq~LIEllsyAlvl~gn-~--i~TSGA~GtNaAvIRGalrae~p~l 127 (213)
+||- ++.++.+-.....|--++.|- --+=.+++++++.-+-.... . ++|||||-.|--++++|-.. .|+-
T Consensus 35 ~~~~-~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~-~~~~ 112 (374)
T PLN03032 35 FDYG-ELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV-FPDG 112 (374)
T ss_pred cChH-HHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh-CCCc
Confidence 5654 477777776667776666552 23345556666655544323 3 89999999998888887433 3332
Q ss_pred eeEeecc
Q 028143 128 LTVILPQ 134 (213)
Q Consensus 128 LTViLPQ 134 (213)
.|+.|.
T Consensus 113 -~vi~s~ 118 (374)
T PLN03032 113 -ILYASR 118 (374)
T ss_pred -EEEeCC
Confidence 455553
No 19
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=59.13 E-value=42 Score=27.89 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=27.9
Q ss_pred cccchhHHHHHHHHHHHHHHh---cCceeecCCCCchHHHHHhhhh
Q 028143 79 RNMGFMHQELIEILSYALVIT---KNHIYTSGASGTNAAVIRGALR 121 (213)
Q Consensus 79 Rhv~~~hq~LIEllsyAlvl~---gn~i~TSGA~GtNaAvIRGalr 121 (213)
..+.-+=+.+++.++.-+-.. .+-++|+|+|-.|..+++.+.+
T Consensus 34 ~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~ 79 (345)
T cd06450 34 PAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARD 79 (345)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHH
Confidence 334444445555555433322 3688999999999999988865
No 20
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=56.48 E-value=1.2e+02 Score=28.64 Aligned_cols=134 Identities=18% Similarity=0.129 Sum_probs=90.8
Q ss_pred hHHHHHHHHHh---cCCceEEEecccccchhHHHHHHHHHHHHHHhcCce--eecCCCCchHHHHHhhhhhcCCCceeEe
Q 028143 57 DYLQELLAIQQ---QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI--YTSGASGTNAAVIRGALRAERPDLLTVI 131 (213)
Q Consensus 57 D~lqELaaIQq---~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i--~TSGA~GtNaAvIRGalrae~p~lLTVi 131 (213)
+.++|+..-.. .....|-|.|. =-|+.|..+.|++.++=...-|.. +|||..=.+..+++-.++. ..+.+.|
T Consensus 58 evl~ev~~d~~~~~~~~ggVtisGG-Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~-gld~v~i- 134 (404)
T TIGR03278 58 VVLGEVQTSLGFRTGRDTKVTISGG-GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN-GVREVSF- 134 (404)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECC-cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-CCCEEEE-
Confidence 37777766432 23356777776 468899999999998876554443 3777643466666666665 4555555
Q ss_pred ecccccCCChhHHHHHHHhhhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeeEeeeCchHHHHHHHHHhhcc
Q 028143 132 LPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLR 204 (213)
Q Consensus 132 LPQSL~kQp~EsrelLe~V~~lvE~penD~LpL~eAS~lCN~eIisr~qQlIcFAFHDS~tLl~tc~eAe~~~ 204 (213)
|++-=.||.++.+-.+-+. ..-|.-..+++. .+.-.++-++|=-|-|++.+.++++.+++++
T Consensus 135 ---Svka~dpe~h~kl~G~~~a-------~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel~~ti~~L~~lg 196 (404)
T TIGR03278 135 ---TVFATDPELRREWMKDPTP-------EASLQCLRRFCE-SCEVHAASVIIPGVNDGDVLWKTCADLESWG 196 (404)
T ss_pred ---ecccCCHHHHHHHhCCCCH-------HHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHHHHHHHHHHHCC
Confidence 5666677777765443221 334455556666 4667788899999999999999999999975
No 21
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=56.10 E-value=40 Score=26.88 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=50.6
Q ss_pred HHHHHHHHH---hcCCceEEEecccc---cchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHH-----HhhhhhcCCC
Q 028143 58 YLQELLAIQ---QQGPRAIGFFGTRN---MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVI-----RGALRAERPD 126 (213)
Q Consensus 58 ~lqELaaIQ---q~g~rria~lGsRh---v~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvI-----RGalrae~p~ 126 (213)
+..|+.++. +.++.+|.|||.-- ++..- ...+.-.+.+-.++--|-+|.+..-+ ++++...+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~iv~lGDSit~g~~~~~-----~~~~~~~~~~~~v~N~Gi~G~tt~~~l~r~~~~~l~~~~pd 91 (214)
T cd01820 17 WMSRHERFVAEAKQKEPDVVFIGDSITQNWEFTG-----LEVWRELYAPLHALNFGIGGDRTQNVLWRLENGELDGVNPK 91 (214)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECchHhhhhcccc-----hHHHHHHcCcCCeEeeeeccccHhHHHHHHhcCCccCCCCC
Confidence 777777776 46788999999742 22211 11222233466777777777776443 2345445799
Q ss_pred ceeEeeccc-ccC--CChhHHHHHHHhhh
Q 028143 127 LLTVILPQS-LKK--QPPESQELLAKVKT 152 (213)
Q Consensus 127 lLTViLPQS-L~k--Qp~EsrelLe~V~~ 152 (213)
++.|.+=-- +.+ -+.+.++-+++++.
T Consensus 92 ~VvI~~G~ND~~~~~~~~~~~~~l~~ii~ 120 (214)
T cd01820 92 VVVLLIGTNNIGHTTTAEEIAEGILAIVE 120 (214)
T ss_pred EEEEEecccccCCCCCHHHHHHHHHHHHH
Confidence 888876321 111 24444555544443
No 22
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=55.27 E-value=48 Score=23.52 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=45.0
Q ss_pred hHHHHHHHH-HhcCCceEEEecccccchhHHHHHHHHHHHHHH---hcCceeecCCCCchHHHHHhhhhhcCCCceeE
Q 028143 57 DYLQELLAI-QQQGPRAIGFFGTRNMGFMHQELIEILSYALVI---TKNHIYTSGASGTNAAVIRGALRAERPDLLTV 130 (213)
Q Consensus 57 D~lqELaaI-Qq~g~rria~lGsRhv~~~hq~LIEllsyAlvl---~gn~i~TSGA~GtNaAvIRGalrae~p~lLTV 130 (213)
++++++..+ ++.|.+.|.+.|. =|++|....+++.++... ...-.++|.++-.+-..++-..+. ..+.+.+
T Consensus 32 ~i~~~~~~~~~~~~~~~i~~~~g--ep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~-~~~~i~~ 106 (166)
T PF04055_consen 32 EILEEIKELKQDKGVKEIFFGGG--EPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKL-GVDRIRI 106 (166)
T ss_dssp HHHHHHHHHHHHTTHEEEEEESS--TGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHT-TCSEEEE
T ss_pred HHHHHHHHHhHhcCCcEEEEeec--CCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhc-CccEEec
Confidence 488889888 7888555555443 488999999999999987 333334444444435555555554 3344444
No 23
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=54.28 E-value=1.2e+02 Score=26.83 Aligned_cols=73 Identities=22% Similarity=0.351 Sum_probs=45.0
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcC-ceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhH
Q 028143 65 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKN-HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPES 143 (213)
Q Consensus 65 IQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn-~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Es 143 (213)
+.+.|.+.|.|.|. =|++|-+++||+.|+-...=. .|.|+| +..+--.++- |.....+-+.| ||+--.+|.
T Consensus 58 ~~~~g~~~v~~~GG--EPll~~~~~~il~~~~~~g~~~~i~TNG-~ll~~~~~~~-L~~~g~~~v~i----Sldg~~~e~ 129 (378)
T PRK05301 58 ARALGALQLHFSGG--EPLLRKDLEELVAHARELGLYTNLITSG-VGLTEARLAA-LKDAGLDHIQL----SFQDSDPEL 129 (378)
T ss_pred HHHcCCcEEEEECC--ccCCchhHHHHHHHHHHcCCcEEEECCC-ccCCHHHHHH-HHHcCCCEEEE----EecCCCHHH
Confidence 34578899999995 499999999999998654212 355554 4445445543 33324454444 555544554
Q ss_pred HH
Q 028143 144 QE 145 (213)
Q Consensus 144 re 145 (213)
.+
T Consensus 130 ~d 131 (378)
T PRK05301 130 ND 131 (378)
T ss_pred HH
Confidence 33
No 24
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=54.21 E-value=5.1 Score=29.54 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=13.8
Q ss_pred HHhcCceeecCCCCchH
Q 028143 97 VITKNHIYTSGASGTNA 113 (213)
Q Consensus 97 vl~gn~i~TSGA~GtNa 113 (213)
+..|+.||+||-.|.+.
T Consensus 7 v~~g~~v~iSGq~~~~~ 23 (105)
T cd06150 7 VVHNGTVYLAGQVADDT 23 (105)
T ss_pred EEECCEEEEeCcCCcCC
Confidence 34689999999998863
No 25
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=51.80 E-value=86 Score=24.13 Aligned_cols=106 Identities=20% Similarity=0.149 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhc-----CCCceeE-eecccccCCChhHHHHHHHhhhHhcCCCCC
Q 028143 87 ELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAE-----RPDLLTV-ILPQSLKKQPPESQELLAKVKTVIEKPHND 160 (213)
Q Consensus 87 ~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae-----~p~lLTV-iLPQSL~kQp~EsrelLe~V~~lvE~penD 160 (213)
+..++++-++ ..|++|++-|+.|..+.+---+.|.- +|-.+.+ .|+... +-...+- .++|
T Consensus 23 ~aa~~i~~~~-~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~---~~~~ 88 (138)
T PF13580_consen 23 KAADLIAEAL-RNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDA----------LTAISND---LEYD 88 (138)
T ss_dssp HHHHHHHHHH-HTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTH----------HHHHHHH---TTGG
T ss_pred HHHHHHHHHH-HCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccch----------Hhhhhcc---cchh
Confidence 4566666666 67888888888666555554444432 2222222 222211 1111111 1111
Q ss_pred CCChHHHHhhhhHHHHhhhceeeeEeee-CchHHHHHHHHHhhccCeeEE
Q 028143 161 HLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTL 209 (213)
Q Consensus 161 ~LpL~eAS~lCN~eIisr~qQlIcFAFH-DS~tLl~tc~eAe~~~KvVTL 209 (213)
. .-|..+.+.-=+..=|=||+|.-. .|..+++.+++|++++..|--
T Consensus 89 ~---~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 89 E---GFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp G---THHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEE
T ss_pred h---HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 1 111122222114455667888764 578899999999999987653
No 26
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=51.11 E-value=38 Score=33.65 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=23.5
Q ss_pred hh-HHHHHHHHHh-cCCceEEEecccccchhH
Q 028143 56 VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMH 85 (213)
Q Consensus 56 ~D-~lqELaaIQq-~g~rria~lGsRhv~~~h 85 (213)
+| ++++|.+|+. .||..|+++|+.+.+...
T Consensus 125 l~~iA~kl~~i~~~~G~~si~~~gsg~~~~~~ 156 (830)
T TIGR01706 125 FDEMEEQFKRALKEKGPTAIGMFGSGQWTIWE 156 (830)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEecCCcchHH
Confidence 55 6777888765 799999999998877543
No 27
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=50.89 E-value=9.2 Score=36.22 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=21.9
Q ss_pred hcCceeecCCCCchHHHHHhhhhhc
Q 028143 99 TKNHIYTSGASGTNAAVIRGALRAE 123 (213)
Q Consensus 99 ~gn~i~TSGA~GtNaAvIRGalrae 123 (213)
..+-+||||||=-|-.+|+|++.+.
T Consensus 61 ~~eIiFTSG~TEsnNlaI~g~~~a~ 85 (386)
T COG1104 61 PEEIIFTSGATESNNLAIKGAALAY 85 (386)
T ss_pred CCeEEEecCCcHHHHHHHHhhHHhh
Confidence 3578999999999999999988774
No 28
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=50.35 E-value=6.2 Score=29.59 Aligned_cols=43 Identities=14% Similarity=0.354 Sum_probs=29.5
Q ss_pred HhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHhhhH
Q 028143 98 ITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTV 153 (213)
Q Consensus 98 l~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelLe~V~~l 153 (213)
..|+.+|+||-.|.+. +--++. |.+++.|.+..-+.|++++.-
T Consensus 16 ~~g~~v~isGq~~~d~------------~~~~~~-~~~~~~Q~~~~l~ni~~~L~~ 58 (121)
T PF01042_consen 16 RAGDTVFISGQVGIDP------------ATGQVV-PGDIEEQTRQALDNIERILAA 58 (121)
T ss_dssp EETTEEEEEEEESBCT------------TTSSBS-SSSHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEeeeCCcCC------------CCCcCC-CCCHHHHHHHHHHhhhhhhhc
Confidence 4799999999988754 334444 788877776665555555443
No 29
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=50.30 E-value=53 Score=25.26 Aligned_cols=64 Identities=14% Similarity=0.243 Sum_probs=34.9
Q ss_pred CceEEEeccccc-ch---hHHHHHHHHHHHHHH--hcCceeecCCCCchHHHHHhh----h----hhcCCCceeEeec
Q 028143 70 PRAIGFFGTRNM-GF---MHQELIEILSYALVI--TKNHIYTSGASGTNAAVIRGA----L----RAERPDLLTVILP 133 (213)
Q Consensus 70 ~rria~lGsRhv-~~---~hq~LIEllsyAlvl--~gn~i~TSGA~GtNaAvIRGa----l----rae~p~lLTViLP 133 (213)
|++|.+||.--. ++ .+......+.+.+.. .+..++--|-.|.++.-+.-- . ..++|++++|.+-
T Consensus 1 ~~~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G 78 (193)
T cd01835 1 PKRLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVG 78 (193)
T ss_pred CcEEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 688999986221 11 234455555554433 244555566666665322111 1 1258999998763
No 30
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=49.94 E-value=58 Score=23.61 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=36.4
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCC--CchHHHHHhhhh
Q 028143 71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGAS--GTNAAVIRGALR 121 (213)
Q Consensus 71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~--GtNaAvIRGalr 121 (213)
.||.|-|+|.+. =|..+..-|...+...+.-++-+|++ |....+-+=|-+
T Consensus 4 ~rVli~GgR~~~-D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~ 55 (71)
T PF10686_consen 4 MRVLITGGRDWT-DHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARE 55 (71)
T ss_pred CEEEEEECCccc-cHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 589999999976 45556677777777777776666655 888877665533
No 31
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=49.74 E-value=23 Score=30.27 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhh
Q 028143 84 MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120 (213)
Q Consensus 84 ~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGal 120 (213)
.+.++-|.++.-+-. .+-++|+|++..+.+++++.+
T Consensus 45 ~~~~l~~~la~~~g~-~~i~~~~g~t~al~~~l~~~~ 80 (361)
T cd06452 45 PIKDFHHDLAEFLGM-DEARVTPGAREGKFAVMHSLC 80 (361)
T ss_pred hHHHHHHHHHHHcCC-ceEEEeCCHHHHHHHHHHHhc
Confidence 355555655544433 566777777766666666654
No 32
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=46.70 E-value=87 Score=27.05 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHH
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 98 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl 98 (213)
+...+..+.+.|.+.|.|.|.- |++|..++|++.++-..
T Consensus 54 i~~~i~~~~~~gi~~I~~tGGE--Pll~~~l~~li~~i~~~ 92 (331)
T PRK00164 54 IERLVRAFVALGVRKVRLTGGE--PLLRKDLEDIIAALAAL 92 (331)
T ss_pred HHHHHHHHHHCCCCEEEEECCC--CcCccCHHHHHHHHHhc
Confidence 5555555666799999999954 99999999999997654
No 33
>PRK10200 putative racemase; Provisional
Probab=46.45 E-value=20 Score=30.43 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=9.7
Q ss_pred HHhcCCceEEEeccc
Q 028143 65 IQQQGPRAIGFFGTR 79 (213)
Q Consensus 65 IQq~g~rria~lGsR 79 (213)
++.+|.|+||+|||+
T Consensus 112 ~~~~~~~~VglLaT~ 126 (230)
T PRK10200 112 ITGAGMTRVALLGTR 126 (230)
T ss_pred HHHcCCCeEEEeccH
Confidence 445667777777765
No 34
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=45.42 E-value=44 Score=24.41 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcC-CceEEEecccccchhHHHH
Q 028143 57 DYLQELLAIQQQG-PRAIGFFGTRNMGFMHQEL 88 (213)
Q Consensus 57 D~lqELaaIQq~g-~rria~lGsRhv~~~hq~L 88 (213)
|+.+||+..+++| +..+-+|++-.||..+...
T Consensus 1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHH
Confidence 5789999999999 8888999999999887654
No 35
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=44.41 E-value=15 Score=35.43 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.8
Q ss_pred HhcCceeecCCCCchHHHHHhhhhhcCC
Q 028143 98 ITKNHIYTSGASGTNAAVIRGALRAERP 125 (213)
Q Consensus 98 l~gn~i~TSGA~GtNaAvIRGalrae~p 125 (213)
-..+-+||||||--|..|++|.-|...-
T Consensus 101 d~~dIiFts~ATEs~Nlvl~~v~~~~~~ 128 (428)
T KOG1549|consen 101 DPSDIVFTSGATESNNLVLKGVARFFGD 128 (428)
T ss_pred CCCcEEEeCCchHHHHHHHHHhhccccc
Confidence 4566899999999999999999996444
No 36
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=44.01 E-value=24 Score=24.53 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=20.7
Q ss_pred hhHHHHhhhcee-eeEeeeCchHHHHHHHHHhhccCe
Q 028143 171 CNMDIISHVQQV-ICFAFHDSRLLMETCQEAKNLRKI 206 (213)
Q Consensus 171 CN~eIisr~qQl-IcFAFHDS~tLl~tc~eAe~~~Kv 206 (213)
-|.+++..+|=+ +|.-.++-..+++.... -..+|+
T Consensus 54 ~~~~~~~~advvilav~p~~~~~v~~~i~~-~~~~~~ 89 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKPQQLPEVLSEIPH-LLKGKL 89 (96)
T ss_dssp EHHHHHHHTSEEEE-S-GGGHHHHHHHHHH-HHTTSE
T ss_pred ChHHhhccCCEEEEEECHHHHHHHHHHHhh-ccCCCE
Confidence 477888877743 46666777777777733 333443
No 37
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=43.88 E-value=96 Score=25.68 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=32.6
Q ss_pred CCceEEEecccccchhHHHHHHHHHHHHHHhcCceeec---CCCCchHHHHHhhh
Q 028143 69 GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTS---GASGTNAAVIRGAL 120 (213)
Q Consensus 69 g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TS---GA~GtNaAvIRGal 120 (213)
-+++|-|+|||. ..+.+|+..+ -.+|.+-++. ||+=||.-.+++-+
T Consensus 55 ~~g~iLfV~t~~---~~~~~v~~~a---~~~~~~~i~~rw~~G~LTN~~~~~~~~ 103 (193)
T cd01425 55 KGGKILFVGTKP---QAQRAVKKFA---ERTGSFYVNGRWLGGTLTNWKTIRKSI 103 (193)
T ss_pred CCCEEEEEECCH---HHHHHHHHHH---HHcCCeeecCeecCCcCCCHHHHHHHH
Confidence 368899999998 3456665444 3446665554 89999999987643
No 38
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=43.79 E-value=59 Score=29.58 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhc
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 100 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~g 100 (213)
+.+.+..+...|.++|-|-|. =|++|..|.|++.|+-.+.|
T Consensus 95 i~~~i~~~~~~Gv~~I~~tGG--EPllr~dl~eli~~l~~~~g 135 (373)
T PLN02951 95 IVRLAGLFVAAGVDKIRLTGG--EPTLRKDIEDICLQLSSLKG 135 (373)
T ss_pred HHHHHHHHHHCCCCEEEEECC--CCcchhhHHHHHHHHHhcCC
Confidence 444444566789999999995 49999999999999877655
No 39
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=43.59 E-value=69 Score=28.03 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-----CChhHHHHHHHh-hhHhcC
Q 028143 83 FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-----QPPESQELLAKV-KTVIEK 156 (213)
Q Consensus 83 ~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~k-----Qp~EsrelLe~V-~~lvE~ 156 (213)
|=-.-+.-++..|.......|+||||+.-|.+.-=.++-+..-=..+|++|..... ||++-..+++.. .+|+.-
T Consensus 47 ~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~ 126 (331)
T PRK03910 47 NKTRKLEFLLADALAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVV 126 (331)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEe
Confidence 44455667777777666688999997555554333333333555678999986653 344555555533 245555
Q ss_pred CCC
Q 028143 157 PHN 159 (213)
Q Consensus 157 pen 159 (213)
|..
T Consensus 127 ~~~ 129 (331)
T PRK03910 127 PAG 129 (331)
T ss_pred Ccc
Confidence 544
No 40
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.58 E-value=2.5e+02 Score=26.20 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhcCCceEEEeccc--c--cch-hHHHHHHHHHHHHHHhcC---ceeecCCCCchHHHHHhhhhhcCCCce
Q 028143 57 DYLQELLAIQQQGPRAIGFFGTR--N--MGF-MHQELIEILSYALVITKN---HIYTSGASGTNAAVIRGALRAERPDLL 128 (213)
Q Consensus 57 D~lqELaaIQq~g~rria~lGsR--h--v~~-~hq~LIEllsyAlvl~gn---~i~TSGA~GtNaAvIRGalrae~p~lL 128 (213)
++++|+..+...|-|.|.|.|.- . .++ .+..|.||+.+..-..|- ++.|+-....+-..+. +|+....-.-
T Consensus 188 ~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~-~l~~~~~~~~ 266 (459)
T PRK14338 188 EIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIH-AVARLPKCCP 266 (459)
T ss_pred HHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHH-HHhccccccc
Confidence 49999999999999999999831 1 111 256788998876554442 3344434444444443 4433111223
Q ss_pred eEeec-ccccCCChhHHHHHHHhhhHhcCCCCCCCChHHHHh---hhhHH---HHhhhceeeeEeeeCchHHHHHHHHHh
Q 028143 129 TVILP-QSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASR---LCNMD---IISHVQQVICFAFHDSRLLMETCQEAK 201 (213)
Q Consensus 129 TViLP-QSL~kQp~EsrelLe~V~~lvE~penD~LpL~eAS~---lCN~e---Iisr~qQlIcFAFHDS~tLl~tc~eAe 201 (213)
.|-|| ||.+ .+.|+ .+-++. +..+.-. .+... |-=.++=++.|---+-+.+.++.+.++
T Consensus 267 ~v~lglQSgs------d~vLk----~m~R~~----t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~ 332 (459)
T PRK14338 267 HINLPVQAGD------DEVLK----RMRRGY----TVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLE 332 (459)
T ss_pred ceecCcccCC------HHHHH----hccCCC----CHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 44443 5553 22222 222321 3333222 22221 112234455677778888999999999
Q ss_pred hccC-eeEEe
Q 028143 202 NLRK-IVTLF 210 (213)
Q Consensus 202 ~~~K-vVTLf 210 (213)
+++- -+.+|
T Consensus 333 ~l~~~~v~i~ 342 (459)
T PRK14338 333 EIRFDKVHIA 342 (459)
T ss_pred HcCCCEeEEE
Confidence 8873 34444
No 41
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=43.50 E-value=76 Score=27.03 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=8.0
Q ss_pred cCCCCCCCChHHHHhhhh
Q 028143 155 EKPHNDHLPLIEASRLCN 172 (213)
Q Consensus 155 E~penD~LpL~eAS~lCN 172 (213)
|.|...-+|+.+-+.+|.
T Consensus 139 ~~~tG~~~~i~~I~~l~~ 156 (363)
T TIGR02326 139 ETTTGILNPIEAVAKLAH 156 (363)
T ss_pred cCCccccCcHHHHHHHHH
Confidence 444444444444444443
No 42
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=43.00 E-value=68 Score=27.50 Aligned_cols=52 Identities=23% Similarity=0.141 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHHHhcCceeecCCCCchHH-HHHhhhhhcCCCceeEeecc
Q 028143 82 GFMHQELIEILSYALVITKNHIYTSGASGTNAA-VIRGALRAERPDLLTVILPQ 134 (213)
Q Consensus 82 ~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaA-vIRGalrae~p~lLTViLPQ 134 (213)
+|=-.-+..++..|......+|+|+|++.-|.+ .+--+-+. .==..||++|.
T Consensus 38 s~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~-~G~~~~ivvp~ 90 (311)
T TIGR01275 38 GNKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKK-LGLDAVLVLRE 90 (311)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHH-hCCceEEEecC
Confidence 344555777888888776678999986554543 33222222 33348899998
No 43
>TIGR00035 asp_race aspartate racemase.
Probab=42.03 E-value=20 Score=29.82 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=18.9
Q ss_pred CCCChhHHHH-HHHHHhcCCceEEEecccc
Q 028143 52 PVPDVDYLQE-LLAIQQQGPRAIGFFGTRN 80 (213)
Q Consensus 52 ~~p~~D~lqE-LaaIQq~g~rria~lGsRh 80 (213)
++|=+...++ ..+++..|.|+||+|||+-
T Consensus 98 ~iPii~i~~~~~~~~~~~~~~~VgvLaT~~ 127 (229)
T TIGR00035 98 GIPLISMIEETAEAVKEDGVKKAGLLGTKG 127 (229)
T ss_pred CCCEechHHHHHHHHHHcCCCEEEEEecHH
Confidence 3554443332 2355778999999999874
No 44
>PRK09064 5-aminolevulinate synthase; Validated
Probab=42.02 E-value=25 Score=30.54 Aligned_cols=45 Identities=29% Similarity=0.303 Sum_probs=22.4
Q ss_pred cccccc---hhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh
Q 028143 77 GTRNMG---FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 77 GsRhv~---~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 122 (213)
|||... -.|+.|-|-++.-+-.....+++|| ++.|.++|+.+.+.
T Consensus 82 ~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG-~~an~~ai~~l~~~ 129 (407)
T PRK09064 82 GTRNISGTNHYHVELERELADLHGKEAALVFTSG-YVSNDATLSTLAKL 129 (407)
T ss_pred CcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcH-HHHHHHHHHHHhCC
Confidence 455543 2455555555543322223333444 35666677766654
No 45
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=41.49 E-value=1.4e+02 Score=21.94 Aligned_cols=42 Identities=29% Similarity=0.136 Sum_probs=32.7
Q ss_pred hhHHHHhhhceeeeEeee---CchHHHHHHHHHhhccCeeEEeecC
Q 028143 171 CNMDIISHVQQVICFAFH---DSRLLMETCQEAKNLRKIVTLFYLD 213 (213)
Q Consensus 171 CN~eIisr~qQlIcFAFH---DS~tLl~tc~eAe~~~KvVTLfy~D 213 (213)
=+.+.|.+||=+|++-=. |+-|..|-. -|..++|-|-+++.|
T Consensus 54 ~d~~~i~~~D~via~l~~~~~d~Gt~~ElG-~A~algkpv~~~~~d 98 (113)
T PF05014_consen 54 RDLEGIRECDIVIANLDGFRPDSGTAFELG-YAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHHHSSEEEEEECSSS--HHHHHHHH-HHHHTTSEEEEEECC
T ss_pred HHHHHHHHCCEEEEECCCCCCCCcHHHHHH-HHHHCCCEEEEEEcC
Confidence 356789999999988654 899999865 567789998888765
No 46
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=40.87 E-value=41 Score=27.76 Aligned_cols=35 Identities=6% Similarity=0.092 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhh
Q 028143 85 HQELIEILSYALVITKNHIYTSGASGTNAAVIRGAL 120 (213)
Q Consensus 85 hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGal 120 (213)
++.|.|-++.-+- ..+.++|+|++..|.+++++.+
T Consensus 34 ~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 34 TAKLEARAAELFG-KEAALFVPSGTAANQLALAAHT 68 (338)
T ss_pred HHHHHHHHHHHhC-CCeEEEecCchHHHHHHHHHhc
Confidence 4555555544333 4455666666555555555543
No 47
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=40.44 E-value=49 Score=30.41 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHH----hcCcee--ecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHH
Q 028143 85 HQELIEILSYALVI----TKNHIY--TSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAK 149 (213)
Q Consensus 85 hq~LIEllsyAlvl----~gn~i~--TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelLe~ 149 (213)
+.--..|+.+|... .|-+|+ |||-||.--|.+--++- =.+++++|..+ ++|-+++|+-
T Consensus 43 DR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~G----y~~iivmP~~~---S~er~~~l~a 106 (300)
T COG0031 43 DRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKG----YRLIIVMPETM---SQERRKLLRA 106 (300)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcC----CcEEEEeCCCC---CHHHHHHHHH
Confidence 44445677788744 488887 99999999887754433 36788899754 4455555543
No 48
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=40.16 E-value=2e+02 Score=23.18 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=49.1
Q ss_pred cCCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCC-CC----chHHHHHhhhhhcCC
Q 028143 51 KPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA-SG----TNAAVIRGALRAERP 125 (213)
Q Consensus 51 ~~~p~~D~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA-~G----tNaAvIRGalrae~p 125 (213)
..++..|++.+|...=++..++|.++|++. ..++-+...|....-.|-.-|. .| .-...|--.+++.+|
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~------~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~p 102 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSE------EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGP 102 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCC
Confidence 344457899999887777788999999973 4445555555555322222222 22 234445556666799
Q ss_pred CceeEeec
Q 028143 126 DLLTVILP 133 (213)
Q Consensus 126 ~lLTViLP 133 (213)
+++-|-|+
T Consensus 103 div~vglG 110 (172)
T PF03808_consen 103 DIVFVGLG 110 (172)
T ss_pred CEEEEECC
Confidence 99999886
No 49
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=40.01 E-value=1.6e+02 Score=22.20 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=6.8
Q ss_pred HHHHHhcCCceEEE
Q 028143 62 LLAIQQQGPRAIGF 75 (213)
Q Consensus 62 LaaIQq~g~rria~ 75 (213)
+..+++.|.+-|.+
T Consensus 72 ~~~l~~~~ip~v~~ 85 (264)
T cd01537 72 VKLARKAGIPVVLV 85 (264)
T ss_pred HHHhhhcCCCEEEe
Confidence 34445555555544
No 50
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.08 E-value=16 Score=31.59 Aligned_cols=17 Identities=59% Similarity=1.025 Sum_probs=14.8
Q ss_pred HhcCCC------CCCCChHHHHh
Q 028143 153 VIEKPH------NDHLPLIEASR 169 (213)
Q Consensus 153 lvE~pe------nD~LpL~eAS~ 169 (213)
++|.|| |||++|.++||
T Consensus 97 v~ehPEitvCyQNDhidLM~esR 119 (175)
T COG3479 97 VVEHPEITVCYQNDHIDLMEESR 119 (175)
T ss_pred hhcCCcEEEEeecCchhHHHHhH
Confidence 677774 99999999998
No 51
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=39.02 E-value=39 Score=25.85 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchH
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 113 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 113 (213)
++.++ +++.|-+. ....++|==...|-|.+..++.. -+-|+|||++|...
T Consensus 23 ~l~~~--l~~~G~~v---~~~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~ 72 (133)
T cd00758 23 ALEAL--LEDLGCEV---IYAGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVGR 72 (133)
T ss_pred HHHHH--HHHCCCEE---EEeeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCCC
Confidence 44444 56667442 22334444455667777777654 78999999999754
No 52
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=38.61 E-value=52 Score=23.16 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=32.9
Q ss_pred ccCCCC-hh-HHHHHHHHHhcCCceEEEec-ccccchhHHHHHHHHHHHHHHhcCceeecCC
Q 028143 50 FKPVPD-VD-YLQELLAIQQQGPRAIGFFG-TRNMGFMHQELIEILSYALVITKNHIYTSGA 108 (213)
Q Consensus 50 ~~~~p~-~D-~lqELaaIQq~g~rria~lG-sRhv~~~hq~LIEllsyAlvl~gn~i~TSGA 108 (213)
|.--|+ +. +++.|..+- .+.|.|++|| .++.+---....+.+...+......+++.|.
T Consensus 20 ~ahNp~s~~a~l~~l~~~~-~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~ 80 (91)
T PF02875_consen 20 YAHNPDSIRALLEALKELY-PKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGD 80 (91)
T ss_dssp T--SHHHHHHHHHHHHHHC-TTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETS
T ss_pred CCCCHHHHHHHHHHHHHhc-cCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 666665 33 445444442 2789999999 4664444455555566656655666776654
No 53
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=38.24 E-value=60 Score=29.26 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=35.0
Q ss_pred hh-HHHHHHHHHhcCCceEEEecccccchhH-HHHHHHHHHHHH
Q 028143 56 VD-YLQELLAIQQQGPRAIGFFGTRNMGFMH-QELIEILSYALV 97 (213)
Q Consensus 56 ~D-~lqELaaIQq~g~rria~lGsRhv~~~h-q~LIEllsyAlv 97 (213)
.+ +.++..++...|.++|.++|.++-+..+ ..++|++.+.-.
T Consensus 105 ~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~ 148 (366)
T TIGR02351 105 EEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLARE 148 (366)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHH
Confidence 45 8888889999999999999988888775 569999887754
No 54
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=37.94 E-value=47 Score=29.39 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHH-hcCceeecCCCCchHHHHHhhhhh
Q 028143 83 FMHQELIEILSYALVI-TKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 83 ~~hq~LIEllsyAlvl-~gn~i~TSGA~GtNaAvIRGalra 122 (213)
-.|++|-|.++.-+-. ..+-++|+|++..|.+++...+..
T Consensus 54 ~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~ 94 (346)
T TIGR03576 54 IFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPP 94 (346)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCC
Confidence 7899999999887754 368999999999999999877654
No 55
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=37.31 E-value=84 Score=31.17 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=23.4
Q ss_pred hh-HHHHHHHHHh-cCCceEEEecccccchhHH
Q 028143 56 VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMHQ 86 (213)
Q Consensus 56 ~D-~lqELaaIQq-~g~rria~lGsRhv~~~hq 86 (213)
+| ++++|..|++ .||+.|+++|+-+.+....
T Consensus 125 l~~iA~~l~~i~~~~G~~~i~~~~~g~~~~~~~ 157 (830)
T PRK13532 125 FDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEG 157 (830)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCcchHHH
Confidence 56 6777877754 7999999999877765443
No 56
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=37.21 E-value=29 Score=30.39 Aligned_cols=45 Identities=27% Similarity=0.200 Sum_probs=29.8
Q ss_pred cccccc-h--hHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh
Q 028143 77 GTRNMG-F--MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 77 GsRhv~-~--~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 122 (213)
|||... . .|.+|-|.++.-+-....-++|||+ ..|.++|+...+.
T Consensus 82 ~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~-~a~~~~i~~l~~~ 129 (410)
T PRK13392 82 GTRNISGTSHPHVLLERELADLHGKESALLFTSGY-VSNDAALSTLGKL 129 (410)
T ss_pred hhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHH-HHHHHHHHHHhcC
Confidence 666643 3 5788888887766555556666664 5577888866554
No 57
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=37.07 E-value=73 Score=24.85 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchH
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 113 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 113 (213)
++.++ +++.|-+.+ ...+++=-...|.+.+..++. .-.-|+|||++|...
T Consensus 31 ~l~~~--l~~~G~~v~---~~~~v~Dd~~~i~~~l~~~~~-~~DliIttGG~g~g~ 80 (144)
T TIGR00177 31 LLAAL--LEEAGFNVS---RLGIVPDDPEEIREILRKAVD-EADVVLTTGGTGVGP 80 (144)
T ss_pred HHHHH--HHHCCCeEE---EEeecCCCHHHHHHHHHHHHh-CCCEEEECCCCCCCC
Confidence 45444 445564322 223344345677777777654 678999999999854
No 58
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.59 E-value=1.3e+02 Score=23.71 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=52.2
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHH
Q 028143 67 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQEL 146 (213)
Q Consensus 67 q~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Esrel 146 (213)
+-|.||||+-++.....+.+ +...+..-........++-..+.++|+.+-|=||-+++-..-+.-..
T Consensus 4 D~G~kriGvA~~d~~~~~a~-------------pl~~i~~~~~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~ 70 (130)
T TIGR00250 4 DFGTKSIGVAGQDITGWTAQ-------------GIPTIKAQDGEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTER 70 (130)
T ss_pred ccCCCeEEEEEECCCCCEEe-------------ceEEEEecCCcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHH
Confidence 35899999998877654432 22333333334557888889999999999999999998877766555
Q ss_pred HHHhhhHh
Q 028143 147 LAKVKTVI 154 (213)
Q Consensus 147 Le~V~~lv 154 (213)
..+....+
T Consensus 71 v~~f~~~L 78 (130)
T TIGR00250 71 AQKFANRL 78 (130)
T ss_pred HHHHHHHH
Confidence 55544443
No 59
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=36.56 E-value=42 Score=28.45 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=27.8
Q ss_pred ceEEEecccccchhH---HHHHHHHHHHHHHhcCc--eeecC
Q 028143 71 RAIGFFGTRNMGFMH---QELIEILSYALVITKNH--IYTSG 107 (213)
Q Consensus 71 rria~lGsRhv~~~h---q~LIEllsyAlvl~gn~--i~TSG 107 (213)
|+|||+|||-+|=-+ -.++|=|+--|+..|+. +|.+.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~ 43 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRS 43 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 789999999888643 56777777778887874 45443
No 60
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=36.53 E-value=1.1e+02 Score=25.95 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCce--eecCCC
Q 028143 57 DYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI--YTSGAS 109 (213)
Q Consensus 57 D~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i--~TSGA~ 109 (213)
++++++..+...|.+.|.|-|. =|++|..|.|++.++-.. |-++ -|+|.-
T Consensus 60 ei~~~i~~~~~~~~~~V~lTGG--EPll~~~l~~li~~l~~~-g~~v~leTNGtl 111 (238)
T TIGR03365 60 EVWQELKALGGGTPLHVSLSGG--NPALQKPLGELIDLGKAK-GYRFALETQGSV 111 (238)
T ss_pred HHHHHHHHHhCCCCCeEEEeCC--chhhhHhHHHHHHHHHHC-CCCEEEECCCCC
Confidence 4777777666667899999995 599999999999998765 4443 455543
No 61
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=36.41 E-value=30 Score=28.53 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=30.2
Q ss_pred ceeecCCCCchHHHHHhhhhhcCCCceeEeecccccC
Q 028143 102 HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK 138 (213)
Q Consensus 102 ~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~k 138 (213)
||||.-+.|-..|++.=|+|| --.=..|.+=|-|+-
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra-~~~g~~v~~vQFlKg 41 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRA-LGHGYRVGVVQFLKG 41 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEEeCC
Confidence 789999999999999999999 455668888777776
No 62
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=36.13 E-value=64 Score=26.01 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=20.8
Q ss_pred cCceeecCCCCchHHHHHhhhhhcCCCceeEeeccc
Q 028143 100 KNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQS 135 (213)
Q Consensus 100 gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQS 135 (213)
.+-++|+|+++.+.+++++..+. --+|++|..
T Consensus 60 ~~~~~~~~~t~a~~~~~~~~~~~----g~~vl~~~~ 91 (350)
T cd00609 60 EEIVVTNGAQEALSLLLRALLNP----GDEVLVPDP 91 (350)
T ss_pred ceEEEecCcHHHHHHHHHHhCCC----CCEEEEcCC
Confidence 45677888877777777776543 125666653
No 63
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=36.07 E-value=46 Score=25.47 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchH
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 113 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 113 (213)
+++++.. +.|-.- .....+|=--..|.+.+..++ ..++-|+|||++|...
T Consensus 21 ~l~~~l~--~~G~~v---~~~~~v~Dd~~~i~~~l~~~~-~~~D~VittGG~g~~~ 70 (144)
T PF00994_consen 21 FLAALLE--ELGIEV---IRYGIVPDDPDAIKEALRRAL-DRADLVITTGGTGPGP 70 (144)
T ss_dssp HHHHHHH--HTTEEE---EEEEEEESSHHHHHHHHHHHH-HTTSEEEEESSSSSST
T ss_pred HHHHHHH--HcCCee---eEEEEECCCHHHHHHHHHhhh-ccCCEEEEcCCcCccc
Confidence 5555544 344422 222233333455566664443 3449999999999653
No 64
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=35.99 E-value=21 Score=26.27 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=12.5
Q ss_pred hcCceeecCCCCch
Q 028143 99 TKNHIYTSGASGTN 112 (213)
Q Consensus 99 ~gn~i~TSGA~GtN 112 (213)
.||.+|+||-.|.+
T Consensus 6 ~g~~v~vSG~~~~~ 19 (101)
T cd06155 6 TGGLLWISNVTASE 19 (101)
T ss_pred ECCEEEEecCCCCC
Confidence 58999999999876
No 65
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=35.85 E-value=47 Score=30.22 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCChh-HHHHHHHHHhcCCceEEEecccccchh--HHHHHH
Q 028143 52 PVPDVD-YLQELLAIQQQGPRAIGFFGTRNMGFM--HQELIE 90 (213)
Q Consensus 52 ~~p~~D-~lqELaaIQq~g~rria~lGsRhv~~~--hq~LIE 90 (213)
..|.+. |++.|...++.| ++||++|.-==||+ |+.|||
T Consensus 120 ~~~~~~~y~~~l~~~~~~~-~~i~~~~g~fdP~t~GH~~li~ 160 (332)
T TIGR00124 120 SATRLKRYCSTLPKPRTPG-NKIGSIVMNANPFTNGHRYLIE 160 (332)
T ss_pred cCcCHHHHHHHHHHhccCC-CcEEEEEeCcCCCchHHHHHHH
Confidence 456775 999999877665 68888888777887 555554
No 66
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=35.68 E-value=2e+02 Score=21.86 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=13.6
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHH
Q 028143 68 QGPRAIGFFGTRNMGFMHQELIEILSYAL 96 (213)
Q Consensus 68 ~g~rria~lGsRhv~~~hq~LIEllsyAl 96 (213)
.|.++|+++++.+-.-.++.-.+-+..++
T Consensus 114 ~g~~~i~~i~~~~~~~~~~~r~~g~~~~~ 142 (264)
T cd06267 114 LGHRRIAFIGGPPDLSTARERLEGYREAL 142 (264)
T ss_pred CCCceEEEecCCCccchHHHHHHHHHHHH
Confidence 46666666655544223333333333333
No 67
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=35.60 E-value=2.5e+02 Score=23.05 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=37.6
Q ss_pred ecccccch---hHHHHHHHHHHHHHHhcCceeecCCCCc--hHHHHHhhhhhc
Q 028143 76 FGTRNMGF---MHQELIEILSYALVITKNHIYTSGASGT--NAAVIRGALRAE 123 (213)
Q Consensus 76 lGsRhv~~---~hq~LIEllsyAlvl~gn~i~TSGA~Gt--NaAvIRGalrae 123 (213)
||+-.++- --.+..+++.+|+-..-|+|=|+-.-|. +-..|.-||+..
T Consensus 16 ~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~ 68 (285)
T cd06660 16 LGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER 68 (285)
T ss_pred eeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc
Confidence 46655543 2368899999999999999999977665 888888888873
No 68
>PRK02769 histidine decarboxylase; Provisional
Probab=35.32 E-value=55 Score=29.70 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHhcCc---eeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 028143 84 MHQELIEILSYALVITKNH---IYTSGASGTNAAVIRGALRAERPDLLTVILPQ 134 (213)
Q Consensus 84 ~hq~LIEllsyAlvl~gn~---i~TSGA~GtNaAvIRGalrae~p~lLTViLPQ 134 (213)
+=.+.+++++.-+-..... ++|||||..|--+++.|... .|+ -.|+.|+
T Consensus 66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~-~~~-~~ii~s~ 117 (380)
T PRK02769 66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL-FPD-GTLYYSK 117 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh-CCC-cEEEeCC
Confidence 3345566666544443233 79999998887666655432 343 2566665
No 69
>PRK05406 LamB/YcsF family protein; Provisional
Probab=35.27 E-value=40 Score=30.29 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=41.3
Q ss_pred ecccccchhHHHHHHHHHHHHHHh----------cCceeecCC--------CCchHHHHHhhhhhcCCCceeEeeccc
Q 028143 76 FGTRNMGFMHQELIEILSYALVIT----------KNHIYTSGA--------SGTNAAVIRGALRAERPDLLTVILPQS 135 (213)
Q Consensus 76 lGsRhv~~~hq~LIEllsyAlvl~----------gn~i~TSGA--------~GtNaAvIRGalrae~p~lLTViLPQS 135 (213)
||-|+|.+.+.+|.+++.|=+..- =+||=.=|| .....|++++.-+. +|+|.-+.+|.|
T Consensus 72 FGRR~m~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~-~~~l~l~~~~~s 148 (246)
T PRK05406 72 FGRRNMDLSPEELYALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAV-DPSLILVGLAGS 148 (246)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHh-CCCcEEEecCCh
Confidence 899999999999999999954322 134444444 23344777755555 999888888876
No 70
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=35.27 E-value=2.2e+02 Score=22.25 Aligned_cols=36 Identities=22% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHHHhc
Q 028143 65 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 100 (213)
Q Consensus 65 IQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~g 100 (213)
+.+.|.++|+|+|...-...++.-++=...++...|
T Consensus 109 l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~ 144 (260)
T cd06286 109 LIQKGYRKIAYCIGRKKSLNSQSRKKAYKDALEEYG 144 (260)
T ss_pred HHHCCCceEEEEcCCcccchhHHHHHHHHHHHHHcC
Confidence 456788889988766544456666666666666554
No 71
>PLN03075 nicotianamine synthase; Provisional
Probab=35.02 E-value=97 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.3
Q ss_pred HHHHHHHhc---CCceEEEecccccchhHH
Q 028143 60 QELLAIQQQ---GPRAIGFFGTRNMGFMHQ 86 (213)
Q Consensus 60 qELaaIQq~---g~rria~lGsRhv~~~hq 86 (213)
.|...+... +||+|+++||-..|+++.
T Consensus 111 lE~~~L~~~~~~~p~~VldIGcGpgpltai 140 (296)
T PLN03075 111 LEFDLLSQHVNGVPTKVAFVGSGPLPLTSI 140 (296)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCcHHHHH
Confidence 576666554 999999999999999884
No 72
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=35.00 E-value=54 Score=27.66 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCceeecC
Q 028143 88 LIEILSYALVITKNHIYTSG 107 (213)
Q Consensus 88 LIEllsyAlvl~gn~i~TSG 107 (213)
.+.++..+++..|.+|+++-
T Consensus 87 a~~~~l~al~~~gd~Vlv~~ 106 (294)
T cd00615 87 SNKAVILAVCGPGDKILIDR 106 (294)
T ss_pred HHHHHHHHcCCCCCEEEEeC
Confidence 34555566666777777663
No 73
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=34.95 E-value=2.2e+02 Score=22.15 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=30.4
Q ss_pred cCCceEEEecccc-cchhHHHHHHHHHHHHHHhcC---ceeecC-CCCchHHHHHhhhhhcCCCceeEeeccc
Q 028143 68 QGPRAIGFFGTRN-MGFMHQELIEILSYALVITKN---HIYTSG-ASGTNAAVIRGALRAERPDLLTVILPQS 135 (213)
Q Consensus 68 ~g~rria~lGsRh-v~~~hq~LIEllsyAlvl~gn---~i~TSG-A~GtNaAvIRGalrae~p~lLTViLPQS 135 (213)
+|.|+|+|+|... -.-.++.-.+=+..++.-.|- .+++.+ .......+++..+++ .| .++|+-.+
T Consensus 112 ~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~i~~~~ 181 (259)
T cd01542 112 QGHKNIAYLGVSESDIAVGILRKQGYLDALKEHGICPPNIVETDFSYESAYEAAQELLEP-QP--PDAIVCAT 181 (259)
T ss_pred cCCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCCChHHeeeccCchhhHHHHHHHHhcC-CC--CCEEEEcC
Confidence 6788888887542 222334444444444443332 122222 122333455555554 34 55555544
No 74
>PLN02778 3,5-epimerase/4-reductase
Probab=34.85 E-value=1.1e+02 Score=26.14 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=41.5
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCc
Q 028143 68 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDL 127 (213)
Q Consensus 68 ~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~l 127 (213)
..+++|-|.|. .||+=.+|++.|. ..|+.+..+.+.-++...+++.++..+||.
T Consensus 7 ~~~~kiLVtG~--tGfiG~~l~~~L~----~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ 60 (298)
T PLN02778 7 SATLKFLIYGK--TGWIGGLLGKLCQ----EQGIDFHYGSGRLENRASLEADIDAVKPTH 60 (298)
T ss_pred CCCCeEEEECC--CCHHHHHHHHHHH----hCCCEEEEecCccCCHHHHHHHHHhcCCCE
Confidence 45678999996 4899999988664 458888755555667788999999878875
No 75
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=34.82 E-value=39 Score=30.45 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=18.3
Q ss_pred HHHHHHHhcCC---ceEEEecccccchhHHHHH
Q 028143 60 QELLAIQQQGP---RAIGFFGTRNMGFMHQELI 89 (213)
Q Consensus 60 qELaaIQq~g~---rria~lGsRhv~~~hq~LI 89 (213)
.|+.++...+. +||+|+||--+|++...|.
T Consensus 108 lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la 140 (276)
T PF03059_consen 108 LEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLA 140 (276)
T ss_dssp HHHH-HTT--TT---EEEEE---SS-HHHHHHH
T ss_pred HHHHHHhhcCCcccceEEEEcCCCcchHHHHHH
Confidence 68888877654 6999999999999977665
No 76
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.79 E-value=23 Score=29.87 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=42.7
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhH
Q 028143 64 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPES 143 (213)
Q Consensus 64 aIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~Es 143 (213)
.|++.---.|=+||-.--+=...+-.|++.|+.+ ||+.||--+|-||-+- |
T Consensus 69 tIk~grItaikvl~h~~d~~~~~~a~evvp~eiv---------kAQStdVD~iSgAT~t--------------------S 119 (135)
T COG3976 69 TIKGGRITAIKVLKHPSDRRTNRQALEVVPDEIV---------KAQSTDVDIISGATLT--------------------S 119 (135)
T ss_pred EEecCcEEEEEEecCCCCcchhhhhcccccHHHh---------hccccccceeeccccc--------------------h
Confidence 4566666677778766666557788899999886 3455555555554443 4
Q ss_pred HHHHHHhhhHhcCCCC
Q 028143 144 QELLAKVKTVIEKPHN 159 (213)
Q Consensus 144 relLe~V~~lvE~pen 159 (213)
+-.++.|.+.+|||+|
T Consensus 120 ~aiI~svekaLek~~~ 135 (135)
T COG3976 120 RAIIQSVEKALEKASS 135 (135)
T ss_pred HHHHHHHHHHHhccCC
Confidence 5555556666777664
No 77
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=34.44 E-value=69 Score=26.90 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHh-cCceeecCCCCchHHHHHhhhh
Q 028143 84 MHQELIEILSYALVIT-KNHIYTSGASGTNAAVIRGALR 121 (213)
Q Consensus 84 ~hq~LIEllsyAlvl~-gn~i~TSGA~GtNaAvIRGalr 121 (213)
++.++.+.++.-+-.. .+-++|+|+++.|.++++.+..
T Consensus 60 ~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~ 98 (371)
T PRK13520 60 LEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARN 98 (371)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHh
Confidence 4566777776544432 3558999999999999888754
No 78
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=34.30 E-value=33 Score=27.55 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=32.2
Q ss_pred eEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEee
Q 028143 72 AIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVIL 132 (213)
Q Consensus 72 ria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViL 132 (213)
||.++|+-++=++.. .|....+-|++|.|+|+.=+.|.. +..+++++=
T Consensus 1 ~il~iG~~~iD~~~~------------~~~~~~~~GG~~~Nva~~la~lG~-~~~~i~~vG 48 (254)
T cd01937 1 KIVIIGHVTIDEIVT------------NGSGVVKPGGPATYASLTLSRLGL-TVKLVTKVG 48 (254)
T ss_pred CeEEEcceeEEEEec------------CCceEEecCchhhhHHHHHHHhCC-CeEEEEeeC
Confidence 466777766655432 244556679999999988777766 666666653
No 79
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=34.17 E-value=79 Score=29.35 Aligned_cols=68 Identities=26% Similarity=0.383 Sum_probs=53.6
Q ss_pred HhcCCceEEEecc-ccc--------chhHHHHHHHHHHHHHHhcCc------eeecCCCCchHHHHHhhhhhcCCCceeE
Q 028143 66 QQQGPRAIGFFGT-RNM--------GFMHQELIEILSYALVITKNH------IYTSGASGTNAAVIRGALRAERPDLLTV 130 (213)
Q Consensus 66 Qq~g~rria~lGs-Rhv--------~~~hq~LIEllsyAlvl~gn~------i~TSGA~GtNaAvIRGalrae~p~lLTV 130 (213)
+..|+|.|+++=. ..+ .+......|-+-+|+-.+++. |-|-|+..-.|--|..++|. .|.-++|
T Consensus 45 ~kr~srvI~~Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~-~~~~v~v 123 (285)
T PF01972_consen 45 EKRGSRVITLIHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALRE-HPAKVTV 123 (285)
T ss_pred HHhCCEEEEEEEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHHh-CCCCEEE
Confidence 4589998887621 223 347777888888888877653 67999999999999999998 8999999
Q ss_pred eecc
Q 028143 131 ILPQ 134 (213)
Q Consensus 131 iLPQ 134 (213)
+.|.
T Consensus 124 ~VP~ 127 (285)
T PF01972_consen 124 IVPH 127 (285)
T ss_pred EECc
Confidence 9985
No 80
>PRK14072 6-phosphofructokinase; Provisional
Probab=34.13 E-value=20 Score=33.60 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=13.5
Q ss_pred eeecCC--CCchHH---HHHhhhhh
Q 028143 103 IYTSGA--SGTNAA---VIRGALRA 122 (213)
Q Consensus 103 i~TSGA--~GtNaA---vIRGalra 122 (213)
|+|||+ .|.||| |+|.|++.
T Consensus 8 IltsGGdapGmNaaIr~vv~~a~~~ 32 (416)
T PRK14072 8 YAQSGGPTAVINASAAGVIEEARKH 32 (416)
T ss_pred EEccCCchHHHHHHHHHHHHHHHHh
Confidence 689998 899974 44444444
No 81
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=33.36 E-value=40 Score=27.24 Aligned_cols=32 Identities=38% Similarity=0.590 Sum_probs=24.5
Q ss_pred hcCCC---ceeEeecc----cccCCChhHHHHHHHhhhH
Q 028143 122 AERPD---LLTVILPQ----SLKKQPPESQELLAKVKTV 153 (213)
Q Consensus 122 ae~p~---lLTViLPQ----SL~kQp~EsrelLe~V~~l 153 (213)
|+||+ .-||+.|+ |-+--....|.+|+||.|+
T Consensus 14 Aqd~dGrCvCTVvaP~q~~CSrD~r~~qlrqllekVqNm 52 (101)
T PF12308_consen 14 AQDPDGRCVCTVVAPQQNLCSRDARSRQLRQLLEKVQNM 52 (101)
T ss_pred ccCCCCCEEEEEecCCcchhccCccHHHHHHHHHHHHHH
Confidence 34555 57999997 5566667889999999986
No 82
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=32.66 E-value=52 Score=24.93 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCce--EEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCch
Q 028143 58 YLQELLAIQQQGPRA--IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTN 112 (213)
Q Consensus 58 ~lqELaaIQq~g~rr--ia~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtN 112 (213)
++.++ +++.|-.. ..++. ==...|.+.+.+++. .-+-|+|+|++|.-
T Consensus 22 ~l~~~--l~~~G~~~~~~~~v~-----Dd~~~I~~~l~~~~~-~~dliittGG~g~g 70 (135)
T smart00852 22 ALAEL--LTELGIEVTRYVIVP-----DDKEAIKEALREALE-RADLVITTGGTGPG 70 (135)
T ss_pred HHHHH--HHHCCCeEEEEEEeC-----CCHHHHHHHHHHHHh-CCCEEEEcCCCCCC
Confidence 66665 56677543 33332 223445566666654 46899999999954
No 83
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=32.59 E-value=55 Score=26.74 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchH
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 113 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 113 (213)
++.++ +++.|-+-+ ..+.+|==...|.+.+.+++. ...-|+|||++|...
T Consensus 23 ~l~~~--L~~~G~~v~---~~~~v~Dd~~~I~~~l~~~~~-~~dlVIttGG~G~t~ 72 (170)
T cd00885 23 FLAKE--LAELGIEVY---RVTVVGDDEDRIAEALRRASE-RADLVITTGGLGPTH 72 (170)
T ss_pred HHHHH--HHHCCCEEE---EEEEeCCCHHHHHHHHHHHHh-CCCEEEECCCCCCCC
Confidence 44443 445665432 233455556778888888775 568999999999765
No 84
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=32.56 E-value=13 Score=37.82 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=35.4
Q ss_pred CCCceeEeecccccC------CChhHHHHHHHhhhHhcCCCCCCCC-hHHHHhhhh
Q 028143 124 RPDLLTVILPQSLKK------QPPESQELLAKVKTVIEKPHNDHLP-LIEASRLCN 172 (213)
Q Consensus 124 ~p~lLTViLPQSL~k------Qp~EsrelLe~V~~lvE~penD~Lp-L~eAS~lCN 172 (213)
-|++++.+|=|++.+ +|.|...+|..+.+++..-+.+..+ ...++.++.
T Consensus 251 ~~~l~~~vle~~l~~i~~~~lt~~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~ 306 (696)
T PF14838_consen 251 LPGLFPAVLEQCLRQIHTNTLTPTEATQLLQNLALLAKWEKSGNVPPASMSSQLTQ 306 (696)
T ss_pred ccchHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHH
Confidence 344444444444443 8999999999999999988888888 556666654
No 85
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=32.23 E-value=1e+02 Score=26.76 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhc
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 100 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~g 100 (213)
+.+.+..+-+.|.++|.|.|. =|++|..+++++.++-...|
T Consensus 48 i~~~i~~~~~~gv~~V~ltGG--EPll~~~l~~li~~i~~~~g 88 (334)
T TIGR02666 48 IERLVRAFVGLGVRKVRLTGG--EPLLRKDLVELVARLAALPG 88 (334)
T ss_pred HHHHHHHHHHCCCCEEEEECc--cccccCCHHHHHHHHHhcCC
Confidence 445555566789999999995 48999999999998655443
No 86
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=32.05 E-value=61 Score=23.07 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=21.9
Q ss_pred hcCceeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 028143 99 TKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ 134 (213)
Q Consensus 99 ~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQ 134 (213)
..+-++|+|++..+..+++.+.+. + =+|++|.
T Consensus 17 ~~~~~~~~~~t~a~~~~~~~~~~~-~---~~v~~~~ 48 (170)
T cd01494 17 NDKAVFVPSGTGANEAALLALLGP-G---DEVIVDA 48 (170)
T ss_pred CCcEEEeCCcHHHHHHHHHHhCCC-C---CEEEEee
Confidence 346778888888888888887543 2 2566654
No 87
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.91 E-value=46 Score=30.47 Aligned_cols=20 Identities=55% Similarity=0.700 Sum_probs=14.4
Q ss_pred ceeecCCCCc-------------hHHHHHhhhh
Q 028143 102 HIYTSGASGT-------------NAAVIRGALR 121 (213)
Q Consensus 102 ~i~TSGA~Gt-------------NaAvIRGalr 121 (213)
-+||||.||. |++.+...+.
T Consensus 176 i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~ 208 (534)
T COG0318 176 LLYTSGTTGLPKGVVLTHRNLLANAAGIAAALG 208 (534)
T ss_pred EEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhc
Confidence 3579999995 4566666666
No 88
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=31.65 E-value=1e+02 Score=26.79 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHH
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYAL 96 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAl 96 (213)
+++++....+.|-++|+|.|..|...-...+.|++..--
T Consensus 41 I~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik 79 (309)
T TIGR00423 41 ILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIK 79 (309)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 888888888889999999987776555566666665543
No 89
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.41 E-value=2.4e+02 Score=25.52 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=53.8
Q ss_pred CCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCC-C----chH-HHHHhhhhhcCC
Q 028143 52 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGAS-G----TNA-AVIRGALRAERP 125 (213)
Q Consensus 52 ~~p~~D~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~-G----tNa-AvIRGalrae~p 125 (213)
.+|.+|+..+|.+.-.+..++|.+||+.. ..+|-.+.-|.....++--.|.. | +.. |+++ .+.+.+|
T Consensus 90 rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp------~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~-~I~~s~p 162 (253)
T COG1922 90 RVAGTDLVEALLKRAAEEGKRVFLLGGKP------GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVE-RIAASGP 162 (253)
T ss_pred cCChHHHHHHHHHHhCccCceEEEecCCH------HHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHH-HHHhcCC
Confidence 55668999999999888899999999974 56777777787777755544443 2 222 4444 4555599
Q ss_pred CceeEee
Q 028143 126 DLLTVIL 132 (213)
Q Consensus 126 ~lLTViL 132 (213)
++|.|=+
T Consensus 163 dil~Vgm 169 (253)
T COG1922 163 DILLVGM 169 (253)
T ss_pred CEEEEeC
Confidence 9999965
No 90
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=31.35 E-value=2.2e+02 Score=23.44 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=53.6
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHH
Q 028143 68 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELL 147 (213)
Q Consensus 68 ~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelL 147 (213)
-|.||||+-.+-..+.+.+-+ ++--..++.- .++..|.--+...+|+.+-|=||-+|+...-...++.
T Consensus 9 ~G~KrIGvA~sd~~~~~A~pl-----------~~i~~~~~~~-~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~ 76 (141)
T COG0816 9 VGTKRIGVAVSDILGSLASPL-----------ETIKRKNGKP-QDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELA 76 (141)
T ss_pred cCCceEEEEEecCCCccccch-----------hhheeccccH-hhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHH
Confidence 488888887777666443322 1111122221 4667777788888999999999999997776677777
Q ss_pred HHhhhHhcCCCC
Q 028143 148 AKVKTVIEKPHN 159 (213)
Q Consensus 148 e~V~~lvE~pen 159 (213)
++..+.+++--|
T Consensus 77 ~~f~~~L~~r~~ 88 (141)
T COG0816 77 RKFAERLKKRFN 88 (141)
T ss_pred HHHHHHHHHhcC
Confidence 777777665443
No 91
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=31.11 E-value=75 Score=30.24 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCC
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA 108 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA 108 (213)
++.=....|+.|.|+|-|.|.--.|-+|+ |+|.|.||... ==-++-|+.
T Consensus 154 La~i~~~~~~~GakNvN~Vgg~Ptp~lp~-Ile~l~~~~~~-iPvvwNSnm 202 (335)
T COG1313 154 LAEIILELRRHGAKNVNFVGGDPTPHLPF-ILEALRYASEN-IPVVWNSNM 202 (335)
T ss_pred HHHHHHHHHHhcCcceeecCCCCCCchHH-HHHHHHHHhcC-CCEEEecCC
Confidence 33333445669999999999666666664 78999998754 223344433
No 92
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=31.02 E-value=29 Score=32.28 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=13.0
Q ss_pred eeecCC--CCchHHHHHhhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALRA 122 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalra 122 (213)
|+|||+ -|.||| |||+.|.
T Consensus 7 IlTSGGdaPGmNa~-Iravvr~ 27 (347)
T COG0205 7 ILTSGGDAPGMNAV-IRAVVRT 27 (347)
T ss_pred EEccCCCCccHHHH-HHHHHHH
Confidence 689997 788873 4555443
No 93
>PRK03321 putative aminotransferase; Provisional
Probab=30.86 E-value=46 Score=28.18 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH-HHhcCceeecCCCCchHHHHHhhhhh
Q 028143 85 HQELIEILSYAL-VITKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 85 hq~LIEllsyAl-vl~gn~i~TSGA~GtNaAvIRGalra 122 (213)
...+-|.++.-+ +-..|-++|||+++...++++..++.
T Consensus 59 ~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~ 97 (352)
T PRK03321 59 AVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGP 97 (352)
T ss_pred HHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCC
Confidence 345555555444 23347778888887777777765543
No 94
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=30.82 E-value=30 Score=26.96 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=22.0
Q ss_pred CCCchHHHHHhhhhhcCCCceeEeecccccC
Q 028143 108 ASGTNAAVIRGALRAERPDLLTVILPQSLKK 138 (213)
Q Consensus 108 A~GtNaAvIRGalrae~p~lLTViLPQSL~k 138 (213)
..|+-..|=...+-.++|+.|.++||++|..
T Consensus 46 ~~g~~~~v~~~~i~~N~ps~l~~~lPa~L~~ 76 (102)
T PF14734_consen 46 DEGTETKVPCSSIVRNKPSRLIFILPADLAA 76 (102)
T ss_pred CCCceEEecHHHeEeCCCcEEEEECcCccCc
Confidence 3444344445556667999999999998864
No 95
>PRK12583 acyl-CoA synthetase; Provisional
Probab=30.80 E-value=51 Score=28.99 Aligned_cols=10 Identities=50% Similarity=0.717 Sum_probs=8.9
Q ss_pred ceeecCCCCc
Q 028143 102 HIYTSGASGT 111 (213)
Q Consensus 102 ~i~TSGA~Gt 111 (213)
-++|||.||+
T Consensus 206 i~~TSGsTG~ 215 (558)
T PRK12583 206 IQYTSGTTGF 215 (558)
T ss_pred EEECCCCCCC
Confidence 4899999997
No 96
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=30.52 E-value=3.2e+02 Score=22.71 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=45.9
Q ss_pred CCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHh--cCceeec-CCCCc-hHHHHHhhhhhcCCCc
Q 028143 52 PVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVIT--KNHIYTS-GASGT-NAAVIRGALRAERPDL 127 (213)
Q Consensus 52 ~~p~~D~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~--gn~i~TS-GA~Gt-NaAvIRGalrae~p~l 127 (213)
.++..|+..+|..-=.+...+|.++|++- ..+|-+...|... |..|..+ |--.. ....|.-.+++.+|++
T Consensus 30 Rv~G~dl~~~l~~~~~~~~~~vfllG~~~------~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~di 103 (177)
T TIGR00696 30 RVAGPDLMEELCQRAGKEKLPIFLYGGKP------DVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGI 103 (177)
T ss_pred ccChHHHHHHHHHHHHHcCCeEEEECCCH------HHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 55557888887765444448999999973 3444444444433 3333332 22211 2355667777779999
Q ss_pred eeEeec
Q 028143 128 LTVILP 133 (213)
Q Consensus 128 LTViLP 133 (213)
|-|=|-
T Consensus 104 l~VglG 109 (177)
T TIGR00696 104 VFVGLG 109 (177)
T ss_pred EEEEcC
Confidence 998874
No 97
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=30.45 E-value=1.3e+02 Score=27.21 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceee---cCCCCchHHHHHhhhhhcCCCceeEeecccccC
Q 028143 62 LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT---SGASGTNAAVIRGALRAERPDLLTVILPQSLKK 138 (213)
Q Consensus 62 LaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~T---SGA~GtNaAvIRGalrae~p~lLTViLPQSL~k 138 (213)
++.|. -++.|.|+|||.. .|.+|+-.+. .. |-+-++ .|++=||... ..+ ..|++|-|+
T Consensus 65 i~~i~--~~~~Il~Vstr~~---~~~~V~k~A~--~t-g~~~i~~Rw~pGtlTN~~~--~~f--~~P~llIV~------- 125 (249)
T PTZ00254 65 IAAIE--NPADVVVVSSRPY---GQRAVLKFAQ--YT-GASAIAGRFTPGTFTNQIQ--KKF--MEPRLLIVT------- 125 (249)
T ss_pred HHHHh--CCCcEEEEEcCHH---HHHHHHHHHH--Hh-CCeEECCcccCCCCCCccc--ccc--CCCCEEEEe-------
Confidence 44452 3777999999973 3556554433 22 333322 4667788732 222 256666553
Q ss_pred CChhHHHHHHHhhhHhcCCCCCCCChHHHHhh
Q 028143 139 QPPESQELLAKVKTVIEKPHNDHLPLIEASRL 170 (213)
Q Consensus 139 Qp~EsrelLe~V~~lvE~penD~LpL~eAS~l 170 (213)
.|..|+-++-|||++
T Consensus 126 -----------------Dp~~d~qAI~EA~~l 140 (249)
T PTZ00254 126 -----------------DPRTDHQAIREASYV 140 (249)
T ss_pred -----------------CCCcchHHHHHHHHh
Confidence 567777777888764
No 98
>PLN02822 serine palmitoyltransferase
Probab=30.23 E-value=49 Score=30.77 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=31.7
Q ss_pred EEecccccc---hhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhh
Q 028143 74 GFFGTRNMG---FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 121 (213)
Q Consensus 74 a~lGsRhv~---~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalr 121 (213)
+.-|+|++. =.|..|-|-++.-+--...-+||+|++ +|.++|+....
T Consensus 142 g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~-a~~sai~a~~~ 191 (481)
T PLN02822 142 GSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS-TIFSVIPAFCK 191 (481)
T ss_pred CCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHH-HHHHHHHHhCC
Confidence 344566542 247777777777665556677788887 68999996644
No 99
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=29.91 E-value=2.6e+02 Score=25.10 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=7.8
Q ss_pred ceeecCCCC-chHHHH
Q 028143 102 HIYTSGASG-TNAAVI 116 (213)
Q Consensus 102 ~i~TSGA~G-tNaAvI 116 (213)
++|..|..+ ...+|.
T Consensus 331 ~vYvCG~~~~M~~~V~ 346 (382)
T cd06207 331 VIYVCGSTWKMPPDVQ 346 (382)
T ss_pred EEEEECCcccccHHHH
Confidence 566666555 444443
No 100
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=29.83 E-value=27 Score=30.86 Aligned_cols=18 Identities=67% Similarity=0.975 Sum_probs=8.8
Q ss_pred eeecCC--CCchHHHHHhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALR 121 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalr 121 (213)
|+|||+ .|.|++ |||+.+
T Consensus 5 Il~sGG~apG~Na~-i~~~v~ 24 (282)
T PF00365_consen 5 ILTSGGDAPGMNAA-IRGVVR 24 (282)
T ss_dssp EEEESS--TTHHHH-HHHHHH
T ss_pred EEecCCCchhhhHH-HHHHHH
Confidence 455554 455543 444443
No 101
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=29.74 E-value=70 Score=26.99 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHh-cCceeecCCCCchHHHHHhhhhh---cCCCceeEeecc
Q 028143 83 FMHQELIEILSYALVIT-KNHIYTSGASGTNAAVIRGALRA---ERPDLLTVILPQ 134 (213)
Q Consensus 83 ~~hq~LIEllsyAlvl~-gn~i~TSGA~GtNaAvIRGalra---e~p~lLTViLPQ 134 (213)
-+++++.+.++.-+-.. .+-++|+|++..|..+++.+... .+| --+|++|.
T Consensus 59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-g~~vl~~~ 113 (373)
T TIGR03812 59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKR-TPNIIVPE 113 (373)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCC-CcEEEECC
Confidence 34678888887665543 45688999888887777654321 122 13677765
No 102
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=29.24 E-value=62 Score=28.69 Aligned_cols=89 Identities=21% Similarity=0.488 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh----c--CCCcee
Q 028143 56 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA----E--RPDLLT 129 (213)
Q Consensus 56 ~D~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra----e--~p~lLT 129 (213)
|||+.|| +.+.|-+-|||=|.--||=+-- ++|-+....+..++-| +..||-.+|. + +++ .
T Consensus 42 VDFmaEl--~K~~Gh~lIGiRGmPRVGKTEs----ivAasVcAnKrW~f~S------STlikQTvRs~L~~dE~~~~--~ 107 (192)
T PF11868_consen 42 VDFMAEL--FKEEGHKLIGIRGMPRVGKTES----IVAASVCANKRWLFLS------STLIKQTVRSQLIEDEYNEN--N 107 (192)
T ss_pred HHHHHHH--HHhcCceEEeecCCCccCchhH----HHHHhhhcCceEEEee------HHHHHHHHHHHhhhcccCcC--c
Confidence 6899987 4689999999999888886642 4566777777888876 3455554443 1 233 3
Q ss_pred Eeec---ccccCCChhHHHHHHHhhh-----HhcCCC
Q 028143 130 VILP---QSLKKQPPESQELLAKVKT-----VIEKPH 158 (213)
Q Consensus 130 ViLP---QSL~kQp~EsrelLe~V~~-----lvE~pe 158 (213)
|.+= -|-.|.++.-+.++..|+. +||+|+
T Consensus 108 ifIIDGivSt~r~~e~H~~Lvreim~lP~~KVvEHPD 144 (192)
T PF11868_consen 108 IFIIDGIVSTRRSNERHWQLVREIMRLPATKVVEHPD 144 (192)
T ss_pred EEEEeeeeeeccCCHHHHHHHHHHHcCCCceeeeCCc
Confidence 3332 3567888899999999986 689885
No 103
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=29.18 E-value=1e+02 Score=27.57 Aligned_cols=46 Identities=17% Similarity=0.024 Sum_probs=24.4
Q ss_pred ecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh
Q 028143 76 FGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 76 lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 122 (213)
.-+|...=.++++-+.++.-. -..+-++|||++..+.+++++.++.
T Consensus 54 ~y~r~~~p~~~~le~~la~l~-g~~~~v~~ssG~~Ai~~al~al~~~ 99 (390)
T PRK08133 54 IYSRFTNPTVTMFQERLAALE-GAEACVATASGMAAILAVVMALLQA 99 (390)
T ss_pred eeECCCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHHhCC
Confidence 344554444555555555322 2335666666666666666665544
No 104
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=28.87 E-value=39 Score=30.44 Aligned_cols=51 Identities=24% Similarity=0.500 Sum_probs=35.9
Q ss_pred CCCChhHHHH-HHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeE
Q 028143 52 PVPDVDYLQE-LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTV 130 (213)
Q Consensus 52 ~~p~~D~lqE-LaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTV 130 (213)
++|=++.+.+ ..+|+..|-||+|+||||- -|. ..+-|+.|.+.. ++|
T Consensus 98 ~iPllhIidaTa~~ik~~g~kkvgLLgT~~--------------Tm~---------------~~fY~~~l~~~g---iev 145 (230)
T COG1794 98 GIPLLHIIDATAKAIKAAGAKKVGLLGTRF--------------TME---------------QGFYRKRLEEKG---IEV 145 (230)
T ss_pred CCCeehHHHHHHHHHHhcCCceeEEeeccc--------------hHH---------------hHHHHHHHHHCC---ceE
Confidence 5565665554 3578889999999999982 221 236678887733 889
Q ss_pred eecc
Q 028143 131 ILPQ 134 (213)
Q Consensus 131 iLPQ 134 (213)
|.|.
T Consensus 146 vvPd 149 (230)
T COG1794 146 VVPD 149 (230)
T ss_pred ecCC
Confidence 9885
No 105
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=28.69 E-value=64 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=25.5
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhh
Q 028143 71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 121 (213)
Q Consensus 71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalr 121 (213)
.+||++|.-++|.. +|-+|+..||+++- -=+|...|...-+
T Consensus 1 M~I~ViGlGyvGl~-------~A~~lA~~G~~V~g---~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 1 MKIAVIGLGYVGLP-------LAAALAEKGHQVIG---VDIDEEKVEALNN 41 (185)
T ss_dssp -EEEEE--STTHHH-------HHHHHHHTTSEEEE---E-S-HHHHHHHHT
T ss_pred CEEEEECCCcchHH-------HHHHHHhCCCEEEE---EeCChHHHHHHhh
Confidence 37999999999986 57788888888873 2345555554333
No 106
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.47 E-value=1.5e+02 Score=22.78 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=33.1
Q ss_pred eEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCch---------HHHHHhhhhhcCCCceeEe
Q 028143 72 AIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTN---------AAVIRGALRAERPDLLTVI 131 (213)
Q Consensus 72 ria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtN---------aAvIRGalrae~p~lLTVi 131 (213)
||.|+|.-+.--+--.+.+.+ -...+.+++.-|..|+- .+-++..+...+|+++.+.
T Consensus 1 ril~iGDS~~~g~~~~l~~~~---~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~pd~vii~ 66 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLRAL---ADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAEEKPDVVVVF 66 (200)
T ss_pred CEEEEechHHHHHHHHHHHHh---ccCCCcEEEECccccccccCCCcCCHHHHHHHHHhcCCCCEEEEE
Confidence 578888876532222333222 23446667776554432 1346666777799988877
No 107
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=28.46 E-value=2.9e+02 Score=24.11 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=45.6
Q ss_pred CCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCC----C------------chHHHHHhhhhhcCCCceeEee
Q 028143 69 GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGAS----G------------TNAAVIRGALRAERPDLLTVIL 132 (213)
Q Consensus 69 g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~----G------------tNaAvIRGalrae~p~lLTViL 132 (213)
+.|+|.|+|+.. +--++..|+...|.+++.-... | ++...++-..+.++++.++
T Consensus 11 ~~~~ilIiG~g~-------~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi--- 80 (395)
T PRK09288 11 SATRVMLLGSGE-------LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIV--- 80 (395)
T ss_pred CCCEEEEECCCH-------HHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEE---
Confidence 567999999973 2233445555667655431111 1 2333455555666676544
Q ss_pred cccccCCChhHHHHHHHhhhHhcCCCCCCCChHHHHhhhhHHHHhh
Q 028143 133 PQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISH 178 (213)
Q Consensus 133 PQSL~kQp~EsrelLe~V~~lvE~penD~LpL~eAS~lCN~eIisr 178 (213)
|.+=. -+.. .+.++ ++-...-.|-.+|.++|..+...|
T Consensus 81 ~~~e~-~~~~---~~~~l----~~~g~~~~~~~~a~~~~~dK~~~k 118 (395)
T PRK09288 81 PEIEA-IATD---ALVEL----EKEGFNVVPTARATRLTMNREGIR 118 (395)
T ss_pred EeeCc-CCHH---HHHHH----HhcCCeeCCCHHHHHHHhCHHHHH
Confidence 32211 1111 12222 221111235578888888776543
No 108
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=28.32 E-value=4.4e+02 Score=23.68 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=44.7
Q ss_pred CceEEEecccccchhHHHHHHHHHHHHHHhcC-ceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHH
Q 028143 70 PRAIGFFGTRNMGFMHQELIEILSYALVITKN-HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELL 147 (213)
Q Consensus 70 ~rria~lGsRhv~~~hq~LIEllsyAlvl~gn-~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelL 147 (213)
|+.++|-|+ -=|++|-.|.|++.++-...-+ .|.|+|.. -.+++-. .+ .++.+.| ||+--.+|+.+.+
T Consensus 130 ~~~v~iSl~-GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~---~e~l~~L-~~-~~d~i~V----SLda~~~e~~~~i 198 (322)
T PRK13762 130 PKHVAISLS-GEPTLYPYLPELIEEFHKRGFTTFLVTNGTR---PDVLEKL-EE-EPTQLYV----SLDAPDEETYKKI 198 (322)
T ss_pred CCEEEEeCC-ccccchhhHHHHHHHHHHcCCCEEEECCCCC---HHHHHHH-Hh-cCCEEEE----EccCCCHHHHHHH
Confidence 778999988 7899999999999988765333 23577743 3445433 33 6666655 5665555655443
No 109
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=28.04 E-value=61 Score=26.21 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=28.8
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHH-HhcCceeecCCCCchH
Q 028143 65 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALV-ITKNHIYTSGASGTNA 113 (213)
Q Consensus 65 IQq~g~rria~lGsRhv~~~hq~LIEllsyAlv-l~gn~i~TSGA~GtNa 113 (213)
+++.|-.-+ . ..++|==...|.+.+..++. ..-.-|+|||++|.-.
T Consensus 31 L~~~G~~v~-~--~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~ 77 (163)
T TIGR02667 31 LTEAGHRLA-D--RAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTG 77 (163)
T ss_pred HHHCCCeEE-E--EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 556664321 1 22344445667777777764 4578899999999753
No 110
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=28.01 E-value=71 Score=25.36 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=22.9
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCcee
Q 028143 66 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY 104 (213)
Q Consensus 66 Qq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~ 104 (213)
++.+.-+|+|+|.-+|+.. |+++|...||+|.
T Consensus 6 ~~~~~l~I~iIGaGrVG~~-------La~aL~~ag~~v~ 37 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGTA-------LARALARAGHEVV 37 (127)
T ss_dssp ------EEEEECTSCCCCH-------HHHHHHHTTSEEE
T ss_pred cCCCccEEEEECCCHHHHH-------HHHHHHHCCCeEE
Confidence 3677789999999999984 7888888999874
No 111
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=27.98 E-value=1.2e+02 Score=24.59 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcC---CceEEEecccccchhHHHHH-HHHHHHHHHhc-CceeecC
Q 028143 58 YLQELLAIQQQG---PRAIGFFGTRNMGFMHQELI-EILSYALVITK-NHIYTSG 107 (213)
Q Consensus 58 ~lqELaaIQq~g---~rria~lGsRhv~~~hq~LI-EllsyAlvl~g-n~i~TSG 107 (213)
+++++..+...+ .+.|.|.| -=|++|..++ +++.|+-...- ..|.|+|
T Consensus 51 i~~~i~~~~~~~~~~~~~I~~~G--GEPll~~~~~~~li~~~~~~g~~~~i~TNG 103 (235)
T TIGR02493 51 LIKEVGSYKDFFKASGGGVTFSG--GEPLLQPEFLSELFKACKELGIHTCLDTSG 103 (235)
T ss_pred HHHHHHHhHHHHhcCCCeEEEeC--cccccCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 555555554432 35799999 7799999865 88888765432 2455666
No 112
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=27.90 E-value=1.1e+02 Score=26.91 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcC
Q 028143 63 LAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKN 101 (213)
Q Consensus 63 aaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn 101 (213)
..+-+.|.+.|.|.|. =|++|.++.|++.|+....-.
T Consensus 66 ~~i~e~g~~~V~i~GG--EPLL~pdl~eiv~~~~~~g~~ 102 (318)
T TIGR03470 66 RAVDECGAPVVSIPGG--EPLLHPEIDEIVRGLVARKKF 102 (318)
T ss_pred HHHHHcCCCEEEEeCc--cccccccHHHHHHHHHHcCCe
Confidence 3444568899999994 799999999999999765443
No 113
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=27.82 E-value=1.4e+02 Score=29.91 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=30.6
Q ss_pred hh-HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecC
Q 028143 56 VD-YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG 107 (213)
Q Consensus 56 ~D-~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSG 107 (213)
+| ++++|.+|+.+|++.|++++++... +.+...+.. ++.-+++.+.|
T Consensus 79 ld~IA~kL~~i~~~gp~~ia~~~g~~~~---~~l~~~f~~--~lGt~n~~~~~ 126 (679)
T cd02763 79 FSIATKRLKAARATDPKKFAFFTGRDQM---QALTGWFAG--QFGTPNYAAHG 126 (679)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCccH---HHHHHHHHH--hcCCCCcCCCC
Confidence 56 7899999999999999999766532 333333333 34444555544
No 114
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=27.81 E-value=48 Score=26.21 Aligned_cols=16 Identities=19% Similarity=0.573 Sum_probs=13.2
Q ss_pred HHHH-hcCCceEEEecc
Q 028143 63 LAIQ-QQGPRAIGFFGT 78 (213)
Q Consensus 63 aaIQ-q~g~rria~lGs 78 (213)
..++ ..|-++|++|||
T Consensus 16 ~~l~~k~gv~~~~vFGS 32 (97)
T COG1669 16 PELKEKYGVKRVAVFGS 32 (97)
T ss_pred HHHHHHhCCceEEEeee
Confidence 3455 789999999998
No 115
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=27.76 E-value=1.8e+02 Score=27.85 Aligned_cols=29 Identities=38% Similarity=0.462 Sum_probs=23.8
Q ss_pred CCCceeEeecccccCCChhHHHHHHHhhhHhc
Q 028143 124 RPDLLTVILPQSLKKQPPESQELLAKVKTVIE 155 (213)
Q Consensus 124 ~p~lLTViLPQSL~kQp~EsrelLe~V~~lvE 155 (213)
=|+-=+|+||||.-=|- |+.|+|-..+--
T Consensus 116 f~d~~iI~lPQSiyF~d---~~nLkkaa~iyn 144 (339)
T COG5039 116 FPDYKIIILPQSIYFQD---QKNLKKAADIYN 144 (339)
T ss_pred CCCCceEeccceeeecc---HHHHHHHHHHHh
Confidence 79999999999998877 777877776653
No 116
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=27.57 E-value=1.6e+02 Score=21.86 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=18.1
Q ss_pred hcCceeecCCCCchHHH----HHhhhhhcCCCceeEee
Q 028143 99 TKNHIYTSGASGTNAAV----IRGALRAERPDLLTVIL 132 (213)
Q Consensus 99 ~gn~i~TSGA~GtNaAv----IRGalrae~p~lLTViL 132 (213)
.+..++..|-+|.++.- ++..+...+|++++|-+
T Consensus 35 ~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~ 72 (177)
T cd01822 35 IDVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILEL 72 (177)
T ss_pred CCeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 34556666655555432 33444455777666543
No 117
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=27.52 E-value=19 Score=29.96 Aligned_cols=10 Identities=70% Similarity=1.401 Sum_probs=7.5
Q ss_pred eEeeeCchHH
Q 028143 184 CFAFHDSRLL 193 (213)
Q Consensus 184 cFAFHDS~tL 193 (213)
||+|||-.+|
T Consensus 114 c~ifHDVDll 123 (136)
T PF13733_consen 114 CFIFHDVDLL 123 (136)
T ss_dssp EEEEE-TTEE
T ss_pred EEEEeccccc
Confidence 9999997665
No 118
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=27.49 E-value=1.8e+02 Score=24.23 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=36.7
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHH--HhcCceeecCCCCchHHHHHhhhhhcCCCceeEeec
Q 028143 66 QQQGPRAIGFFGTRNMGFMHQELIEILSYALV--ITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP 133 (213)
Q Consensus 66 Qq~g~rria~lGsRhv~~~hq~LIEllsyAlv--l~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLP 133 (213)
.+.|.|+|+++... -++-. ...+.+..++- ..+...+..|.+-....+ . .+++.+|+.+.+..+
T Consensus 130 ~~~g~~~vail~~~-~~~g~-~~~~~~~~~~~~~v~~~~~~~~~~~d~~~~i-~-~l~~~~pd~v~~~~~ 195 (333)
T cd06359 130 QDKGYKRVFLIAPN-YQAGK-DALAGFKRTFKGEVVGEVYTKLGQLDFSAEL-A-QIRAAKPDAVFVFLP 195 (333)
T ss_pred HHhCCCeEEEEecC-chhhH-HHHHHHHHHhCceeeeeecCCCCCcchHHHH-H-HHHhCCCCEEEEEcc
Confidence 44689999999864 46643 45566655541 122333344444333333 3 356669998877554
No 119
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=27.28 E-value=61 Score=29.59 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchH
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 113 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNa 113 (213)
++.++ +++.|-.- ...+.+|==+..|.|.+..++...-+-|+|||++|...
T Consensus 179 ~L~~~--L~~~G~~v---~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 179 LIVEG--LEEAGFEV---SHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred HHHHH--HHHCCCEE---EEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 56665 56667542 33455666677888888888755679999999999865
No 120
>PRK03670 competence damage-inducible protein A; Provisional
Probab=27.27 E-value=62 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=24.3
Q ss_pred cchhHHHHHHHHHHHHHHhcCceeecCCCCch
Q 028143 81 MGFMHQELIEILSYALVITKNHIYTSGASGTN 112 (213)
Q Consensus 81 v~~~hq~LIEllsyAlvl~gn~i~TSGA~GtN 112 (213)
+|==...|.+.+..++.....-|+|||+.|..
T Consensus 42 V~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt 73 (252)
T PRK03670 42 VGDDVEEIKSVVLEILSRKPEVLVISGGLGPT 73 (252)
T ss_pred cCCCHHHHHHHHHHHhhCCCCEEEECCCccCC
Confidence 44446778888888776556899999999864
No 121
>PRK08308 acyl-CoA synthetase; Validated
Probab=27.17 E-value=64 Score=27.64 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=8.5
Q ss_pred ceeecCCCCc
Q 028143 102 HIYTSGASGT 111 (213)
Q Consensus 102 ~i~TSGA~Gt 111 (213)
-++|||+||.
T Consensus 106 i~~TSGtTG~ 115 (414)
T PRK08308 106 LQYSSGTTGE 115 (414)
T ss_pred EEECCCCCCC
Confidence 4789999996
No 122
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.12 E-value=1.6e+02 Score=27.34 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=19.1
Q ss_pred hh-HHHHHHHHHh-cCCceEEEeccc
Q 028143 56 VD-YLQELLAIQQ-QGPRAIGFFGTR 79 (213)
Q Consensus 56 ~D-~lqELaaIQq-~g~rria~lGsR 79 (213)
+| +++.|.+|++ .||..|+++++.
T Consensus 75 l~~ia~kl~~i~~~~G~~~i~~~~g~ 100 (539)
T cd02762 75 FDEIAERLRAIRARHGGDAVGVYGGN 100 (539)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 56 7788888876 699999999654
No 123
>PRK08361 aspartate aminotransferase; Provisional
Probab=27.08 E-value=71 Score=27.75 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=10.9
Q ss_pred CceeecCCCCchHHHHHhhh
Q 028143 101 NHIYTSGASGTNAAVIRGAL 120 (213)
Q Consensus 101 n~i~TSGA~GtNaAvIRGal 120 (213)
|-++|+|++..+.+++++.+
T Consensus 95 ~i~~t~G~~~al~~~~~~l~ 114 (391)
T PRK08361 95 NVIVTAGAYEATYLAFESLL 114 (391)
T ss_pred cEEEeCChHHHHHHHHHHhc
Confidence 45556666555555555443
No 124
>PRK07324 transaminase; Validated
Probab=26.89 E-value=56 Score=28.54 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=17.8
Q ss_pred hcCceeecCCCCchHHHHHhhhhh
Q 028143 99 TKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 99 ~gn~i~TSGA~GtNaAvIRGalra 122 (213)
..|-++|+|+++.+..++++.+..
T Consensus 80 ~~~vi~t~G~~~al~~~~~~l~~~ 103 (373)
T PRK07324 80 PENILQTNGATGANFLVLYALVEP 103 (373)
T ss_pred hhhEEEcCChHHHHHHHHHHhCCC
Confidence 356678888888888888877654
No 125
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.74 E-value=1.3e+02 Score=27.49 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=22.6
Q ss_pred hh-HHHHHHHHHh-cCCceEEEecc-cccchhHHHH
Q 028143 56 VD-YLQELLAIQQ-QGPRAIGFFGT-RNMGFMHQEL 88 (213)
Q Consensus 56 ~D-~lqELaaIQq-~g~rria~lGs-Rhv~~~hq~L 88 (213)
+| +++.|.+|++ .||..|+++++ .+.+..+..+
T Consensus 91 l~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~ 126 (461)
T cd02750 91 LELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAA 126 (461)
T ss_pred HHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHH
Confidence 56 6778888765 59999999876 4444444433
No 126
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.60 E-value=3.6e+02 Score=22.02 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=10.0
Q ss_pred HHhcCCceEEEecc
Q 028143 65 IQQQGPRAIGFFGT 78 (213)
Q Consensus 65 IQq~g~rria~lGs 78 (213)
+-+.|.|+|||+|+
T Consensus 113 L~~~G~~~I~~i~~ 126 (269)
T cd06287 113 LRAQGARQIALIVG 126 (269)
T ss_pred HHHcCCCcEEEEeC
Confidence 45668888888854
No 127
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=26.55 E-value=30 Score=34.34 Aligned_cols=9 Identities=78% Similarity=1.269 Sum_probs=8.4
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
|||||.||+
T Consensus 197 iYTSGTTG~ 205 (613)
T COG1022 197 IYTSGTTGT 205 (613)
T ss_pred EEcCCCCCC
Confidence 899999996
No 128
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=26.51 E-value=2.2e+02 Score=25.03 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccc
Q 028143 85 HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSL 136 (213)
Q Consensus 85 hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL 136 (213)
-..+..++..|....--.|+|+|+++-|.+.-=.+.-+..==..+|++|...
T Consensus 51 ~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~ 102 (337)
T TIGR01274 51 TRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWV 102 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCC
Confidence 3457778888887777778888876666544333333323334567888754
No 129
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.45 E-value=53 Score=24.49 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHHHHhhhHhcCCCCCCCChHHHHhhhhH--HHHhhhce
Q 028143 144 QELLAKVKTVIEKPHNDHLPLIEASRLCNM--DIISHVQQ 181 (213)
Q Consensus 144 relLe~V~~lvE~penD~LpL~eAS~lCN~--eIisr~qQ 181 (213)
-+.++++..+|++=++..+||.++-.+-.. +++..|++
T Consensus 13 Eea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~ 52 (80)
T PRK00977 13 EEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQK 52 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777889999998776432 44555544
No 130
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=25.79 E-value=1.6e+02 Score=21.33 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=16.8
Q ss_pred HHhcCCceEEEec-ccccchhHHHHHH
Q 028143 65 IQQQGPRAIGFFG-TRNMGFMHQELIE 90 (213)
Q Consensus 65 IQq~g~rria~lG-sRhv~~~hq~LIE 90 (213)
+-++|.|+|+|+| ..+....+..+--
T Consensus 4 L~~~G~r~i~~i~~~~~~~~~~~r~~g 30 (160)
T PF13377_consen 4 LIERGHRRIAFIGGPPNSSVSRERLEG 30 (160)
T ss_dssp HHHTT-SSEEEEESSTTSHHHHHHHHH
T ss_pred HHHCCCCeEEEEecCCCChhHHHHHHH
Confidence 4578999999999 4445555554433
No 131
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=25.77 E-value=1e+02 Score=26.37 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=29.4
Q ss_pred Eecccccc---hhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh
Q 028143 75 FFGTRNMG---FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 75 ~lGsRhv~---~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 122 (213)
.=++||+. -.|..|-|-++.-+- ..+-|+|+|++..|.+++.+.++.
T Consensus 72 ~~~s~~~~G~~~~~~~le~~ia~~~g-~~~~ii~~~~~~a~~~~~~~l~~~ 121 (393)
T TIGR01822 72 MSSVRFICGTQDIHKELEAKIAAFLG-TEDTILYASCFDANGGLFETLLGA 121 (393)
T ss_pred CCCcCcccCChHHHHHHHHHHHHHhC-CCcEEEECchHHHHHHHHHHhCCC
Confidence 34566543 235666666664443 357888888887777887766543
No 132
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=25.72 E-value=36 Score=32.34 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=14.3
Q ss_pred eeecCC--CCchHHHHHhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALR 121 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalr 121 (213)
|+|||+ .|.|| +|||+.+
T Consensus 8 IltsGGdapGmNa-aI~~vv~ 27 (403)
T PRK06555 8 LLTAGGLAPCLSS-AVGGLIE 27 (403)
T ss_pred EECCCCCchhHHH-HHHHHHH
Confidence 689998 78997 5677764
No 133
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.53 E-value=89 Score=31.21 Aligned_cols=49 Identities=31% Similarity=0.459 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeE-eeccc
Q 028143 86 QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQS 135 (213)
Q Consensus 86 q~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTV-iLPQS 135 (213)
|-=.+-+.-++.-...-||--|+-||-.-|.-|.||. +-++++| ++|--
T Consensus 103 ~gqak~l~e~~~t~~Dii~VaGGDGT~~eVVTGi~Rr-r~~~~pv~~~P~G 152 (535)
T KOG4435|consen 103 QGQAKALAEAVDTQEDIIYVAGGDGTIGEVVTGIFRR-RKAQLPVGFYPGG 152 (535)
T ss_pred HHHHHHHHHHhccCCCeEEEecCCCcHHHhhHHHHhc-ccccCceeeccCc
Confidence 3334566667777778999999999999999999999 7888887 45543
No 134
>PRK06256 biotin synthase; Validated
Probab=25.42 E-value=3.8e+02 Score=23.29 Aligned_cols=65 Identities=8% Similarity=-0.005 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCCceEEEecccccchhH--HHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh
Q 028143 57 DYLQELLAIQQQGPRAIGFFGTRNMGFMH--QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 57 D~lqELaaIQq~g~rria~lGsRhv~~~h--q~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 122 (213)
+++.+...+.+.|.+++.|.++-+-|... ..+.|++.+.-...+=++.+|.+. .+...++-.-+|
T Consensus 95 eI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-l~~e~l~~Lkea 161 (336)
T PRK06256 95 ELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-LTEEQAERLKEA 161 (336)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-CCHHHHHHHHHh
Confidence 38888888889999999998776655543 478888776654444456676554 455555543333
No 135
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=25.28 E-value=88 Score=24.60 Aligned_cols=33 Identities=21% Similarity=0.096 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHHHHHH-hcCceeecCCCCchH
Q 028143 81 MGFMHQELIEILSYALVI-TKNHIYTSGASGTNA 113 (213)
Q Consensus 81 v~~~hq~LIEllsyAlvl-~gn~i~TSGA~GtNa 113 (213)
+|==...|.+.+..++.. .-..|+|||++|.-.
T Consensus 42 v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~ 75 (152)
T cd00886 42 VPDDKDEIREALIEWADEDGVDLILTTGGTGLAP 75 (152)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 333346777888777542 467899999998753
No 136
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=25.11 E-value=33 Score=28.64 Aligned_cols=9 Identities=56% Similarity=0.866 Sum_probs=8.4
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
++|||+||.
T Consensus 41 l~TSGTTG~ 49 (358)
T PRK07824 41 VATSGTTGT 49 (358)
T ss_pred EeCCCCCCC
Confidence 899999996
No 137
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=25.00 E-value=81 Score=27.72 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=12.7
Q ss_pred hcCCC---CCCCChHHHHhhhhH
Q 028143 154 IEKPH---NDHLPLIEASRLCNM 173 (213)
Q Consensus 154 vE~pe---nD~LpL~eAS~lCN~ 173 (213)
+|.|. .+-.|+.+-..+|.+
T Consensus 183 ~~~v~~~~G~~~~l~~i~~l~~~ 205 (406)
T PRK13393 183 FESVYSMDGDIAPIAEICDVAEK 205 (406)
T ss_pred EcCCCCCCCchhCHHHHHHHHHH
Confidence 45443 455677777777764
No 138
>PRK07777 aminotransferase; Validated
Probab=24.91 E-value=49 Score=28.62 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=14.3
Q ss_pred CceeecCCCCchHHHHHhhhh
Q 028143 101 NHIYTSGASGTNAAVIRGALR 121 (213)
Q Consensus 101 n~i~TSGA~GtNaAvIRGalr 121 (213)
|-++|+|+++...+++++.+.
T Consensus 87 ~i~~t~G~~~al~~~~~~~~~ 107 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLVE 107 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcC
Confidence 567788877777777765543
No 139
>PRK07638 acyl-CoA synthetase; Validated
Probab=24.79 E-value=34 Score=29.73 Aligned_cols=10 Identities=40% Similarity=0.664 Sum_probs=8.7
Q ss_pred ceeecCCCCc
Q 028143 102 HIYTSGASGT 111 (213)
Q Consensus 102 ~i~TSGA~Gt 111 (213)
-++|||+||+
T Consensus 148 i~~TSGtTG~ 157 (487)
T PRK07638 148 MGFTSGSTGK 157 (487)
T ss_pred EEeCCCCCCC
Confidence 3799999996
No 140
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=24.77 E-value=43 Score=22.71 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=18.9
Q ss_pred HHHhhhHhcCCCCCCCChHHHHhhhh--HHHHhhhce
Q 028143 147 LAKVKTVIEKPHNDHLPLIEASRLCN--MDIISHVQQ 181 (213)
Q Consensus 147 Le~V~~lvE~penD~LpL~eAS~lCN--~eIisr~qQ 181 (213)
++++..+|++=+|+++||+++..+=- ..++.+|++
T Consensus 5 ~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~ 41 (53)
T PF02609_consen 5 MERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQE 41 (53)
T ss_dssp HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555678999999876643 234444443
No 141
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=24.64 E-value=52 Score=25.12 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=12.0
Q ss_pred HhcCceeecCCCCch
Q 028143 98 ITKNHIYTSGASGTN 112 (213)
Q Consensus 98 l~gn~i~TSGA~GtN 112 (213)
..|+.||+||-.|.+
T Consensus 8 ~~g~~v~~SGq~g~d 22 (114)
T cd06152 8 RIGDRIEISGQGGWD 22 (114)
T ss_pred EECCEEEEeccCCcC
Confidence 358899999987764
No 142
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=24.43 E-value=2.7e+02 Score=24.25 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=43.7
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeec---CCCCchHHHHHhhhhhcCCCceeEeecccccCCChh
Q 028143 66 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTS---GASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPE 142 (213)
Q Consensus 66 Qq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TS---GA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~E 142 (213)
..-.+++|-|.|||.. .+.+|+-.|.. +|-+-++. |++=||.-. +.- -.|+++-|+
T Consensus 63 ~~~~~~~ILfVgTk~~---~~~~v~k~A~~---~g~~~v~~RWlgG~LTN~~~-~~~---~~Pdliiv~----------- 121 (204)
T PRK04020 63 SRYEPEKILVVSSRQY---GQKPVQKFAEV---VGAKAITGRFIPGTLTNPSL-KGY---IEPDVVVVT----------- 121 (204)
T ss_pred HHhcCCeEEEEeCCHH---HHHHHHHHHHH---hCCeeecCccCCCcCcCcch-hcc---CCCCEEEEE-----------
Confidence 3335789999999983 45665544433 24444444 888899763 111 156665544
Q ss_pred HHHHHHHhhhHhcCCCCCCCChHHHHhh
Q 028143 143 SQELLAKVKTVIEKPHNDHLPLIEASRL 170 (213)
Q Consensus 143 srelLe~V~~lvE~penD~LpL~eAS~l 170 (213)
.|.+|+..+.||+++
T Consensus 122 -------------dp~~~~~AI~EA~kl 136 (204)
T PRK04020 122 -------------DPRGDAQAVKEAIEV 136 (204)
T ss_pred -------------CCcccHHHHHHHHHh
Confidence 566777777788765
No 143
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.29 E-value=73 Score=25.51 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHH
Q 028143 56 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEIL 92 (213)
Q Consensus 56 ~D~lqELaaIQq~g~rria~lGsRhv~~~hq~LIEll 92 (213)
.|+++=|.... ...++||++|.+++..--..+-+++
T Consensus 64 ~Dil~al~~a~-~~~~~Iavv~~~~~~~~~~~~~~ll 99 (176)
T PF06506_consen 64 FDILRALAKAK-KYGPKIAVVGYPNIIPGLESIEELL 99 (176)
T ss_dssp HHHHHHHHHCC-CCTSEEEEEEESS-SCCHHHHHHHH
T ss_pred hHHHHHHHHHH-hcCCcEEEEecccccHHHHHHHHHh
Confidence 58888888777 4558999999999876555555554
No 144
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.15 E-value=2.2e+02 Score=26.35 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=25.6
Q ss_pred hh-HHHHHHHHHh-cCCceEEEecccccchhHHHHH
Q 028143 56 VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMHQELI 89 (213)
Q Consensus 56 ~D-~lqELaaIQq-~g~rria~lGsRhv~~~hq~LI 89 (213)
+| +++.|..|++ .|+++|+++|+.+++.-...++
T Consensus 76 l~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~ 111 (565)
T cd02754 76 LDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAA 111 (565)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHH
Confidence 56 6777888875 7999999999988775444443
No 145
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=24.14 E-value=35 Score=30.43 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=7.6
Q ss_pred eeecCCCC
Q 028143 103 IYTSGASG 110 (213)
Q Consensus 103 i~TSGA~G 110 (213)
+||||.||
T Consensus 158 ~~TSGTTG 165 (525)
T PRK05851 158 QGTAGSTG 165 (525)
T ss_pred EeCCCCCC
Confidence 79999999
No 146
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=23.94 E-value=2.4e+02 Score=23.91 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=28.9
Q ss_pred hh-HHHHHHHHHh-cCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCC
Q 028143 56 VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA 108 (213)
Q Consensus 56 ~D-~lqELaaIQq-~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA 108 (213)
++ +++.|..+.+ .|++.|+++++...+..-..+..- .+..+.++.+.+.+.
T Consensus 77 l~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~ 129 (374)
T cd00368 77 LDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQK--LLRALGSNNVDSHAR 129 (374)
T ss_pred HHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHH--HHHhcCCCccCCCCc
Confidence 44 5566666654 589999988776655433333222 123455566655544
No 147
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=23.90 E-value=44 Score=28.07 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCceEEEecccccc--hhHHHHHHHHHHHHHHhcCceee
Q 028143 58 YLQELLAIQQQGPRAIGFFGTRNMG--FMHQELIEILSYALVITKNHIYT 105 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsRhv~--~~hq~LIEllsyAlvl~gn~i~T 105 (213)
-.+|||.-=-.|. . .|+=-.| +.|-++||-.|-+|+++||.|+=
T Consensus 65 ~~idlA~FlTg~~-v---vs~falPiVl~ha~lI~~gAc~l~~tg~~iIF 110 (131)
T KOG2174|consen 65 ACIDLAKFLTGAI-V---VSAFALPIVLAHAGLIGWGACALVLTGNSIIF 110 (131)
T ss_pred HHHHHHHHHhcch-h---hhhhhhHHHHHHhhHhhhhhhhhhhcCCchhH
Confidence 5677776554443 2 2333445 46999999999999999988764
No 148
>PRK05852 acyl-CoA synthetase; Validated
Probab=23.84 E-value=82 Score=27.94 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=9.0
Q ss_pred CceeecCCCCc
Q 028143 101 NHIYTSGASGT 111 (213)
Q Consensus 101 n~i~TSGA~Gt 111 (213)
..+||||+||.
T Consensus 180 ~il~TSGTTG~ 190 (534)
T PRK05852 180 MIMFTGGTTGL 190 (534)
T ss_pred EEEeCCCCCCC
Confidence 35799999997
No 149
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=23.78 E-value=3.6e+02 Score=23.24 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHhcCceeecCCCC---chHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHH
Q 028143 83 FMHQELIEILSYALVITKNHIYTSGASG---TNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAK 149 (213)
Q Consensus 83 ~~hq~LIEllsyAlvl~gn~i~TSGA~G---tNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelLe~ 149 (213)
|=..-+.-++++|....+.+|+|+ ++| ...|.+-.. .-=-.+|++|... |++-+++++.
T Consensus 53 ~K~R~a~~~l~~a~~~g~~~vv~~-SsGN~g~alA~~a~~----~G~~~~ivvp~~~---~~~k~~~l~~ 114 (324)
T cd01563 53 FKDRGMTVAVSKAKELGVKAVACA-STGNTSASLAAYAAR----AGIKCVVFLPAGK---ALGKLAQALA 114 (324)
T ss_pred HHHhhHHHHHHHHHHcCCCEEEEe-CCCHHHHHHHHHHHH----cCCceEEEEeCCC---CHHHHHHHHH
Confidence 445556667888888778888876 333 222333222 2234899999976 5555555554
No 150
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=23.55 E-value=1.5e+02 Score=22.33 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=44.4
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCCCCchHHH----HHhhhhhcCCCceeEeecc---cccCCChhH
Q 028143 71 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAV----IRGALRAERPDLLTVILPQ---SLKKQPPES 143 (213)
Q Consensus 71 rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAv----IRGalrae~p~lLTViLPQ---SL~kQp~Es 143 (213)
|+|.|+|....-..... .....+..++-.|-+|.++.- +...+.+.+|+++.|.+=- .....+.+.
T Consensus 1 ~~iv~~GdS~t~~~~~~-------~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~ 73 (174)
T cd01841 1 KNIVFIGDSLFEGWPLY-------EAEGKGKTVNNLGIAGISSRQYLEHIEPQLIQKNPSKVFLFLGTNDIGKEVSSNQF 73 (174)
T ss_pred CCEEEEcchhhhcCchh-------hhccCCCeEEecccccccHHHHHHHHHHHHHhcCCCEEEEEeccccCCCCCCHHHH
Confidence 57888887654322211 111456677888888877643 3345556789998776421 111245566
Q ss_pred HHHHHHhhhHh
Q 028143 144 QELLAKVKTVI 154 (213)
Q Consensus 144 relLe~V~~lv 154 (213)
++-+++++.-+
T Consensus 74 ~~~~~~l~~~~ 84 (174)
T cd01841 74 IKWYRDIIEQI 84 (174)
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 151
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=23.44 E-value=42 Score=30.42 Aligned_cols=19 Identities=58% Similarity=0.928 Sum_probs=11.6
Q ss_pred eeecCC--CCchHHHHHhhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALRA 122 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalra 122 (213)
|+|||+ .|.||+ |||+.+.
T Consensus 5 IltsGG~apGmNa~-i~~vv~~ 25 (317)
T cd00763 5 VLTSGGDAPGMNAA-IRGVVRS 25 (317)
T ss_pred EEccCCCcHHHHHH-HHHHHHH
Confidence 678886 677763 4444443
No 152
>PRK09088 acyl-CoA synthetase; Validated
Probab=23.14 E-value=85 Score=27.20 Aligned_cols=10 Identities=50% Similarity=0.880 Sum_probs=8.5
Q ss_pred ceeecCCCCc
Q 028143 102 HIYTSGASGT 111 (213)
Q Consensus 102 ~i~TSGA~Gt 111 (213)
-++|||.||.
T Consensus 140 i~~TSGTTG~ 149 (488)
T PRK09088 140 ILFTSGTSGQ 149 (488)
T ss_pred EEeCCCCCCC
Confidence 3789999996
No 153
>PLN02564 6-phosphofructokinase
Probab=23.02 E-value=49 Score=32.30 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=26.4
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHHhcCceeecCC--CCchHHHHHhhhhh
Q 028143 64 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA--SGTNAAVIRGALRA 122 (213)
Q Consensus 64 aIQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA--~GtNaAvIRGalra 122 (213)
..-.-|||+=-+|=...+-+ =|+|||+ -|.|+ |||++.++
T Consensus 71 ~~~~agpr~~i~f~p~~~ri------------------aIlTsGGd~PGmNa-vIRavv~~ 112 (484)
T PLN02564 71 HFRRAGPRQKVYFESDEVRA------------------CIVTCGGLCPGLNT-VIREIVCG 112 (484)
T ss_pred cceecCCcceEEEcCcceEE------------------EEECCCCCCccHhH-HHHHHHHH
Confidence 34556888766666554432 3789998 79996 46666654
No 154
>PRK06145 acyl-CoA synthetase; Validated
Probab=22.96 E-value=86 Score=27.16 Aligned_cols=9 Identities=44% Similarity=0.874 Sum_probs=8.2
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
++|||.||.
T Consensus 155 ~~TSGTTG~ 163 (497)
T PRK06145 155 MYTSGTTDR 163 (497)
T ss_pred EeCCCCCCC
Confidence 789999996
No 155
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=22.95 E-value=38 Score=30.90 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=8.7
Q ss_pred ceeecCCCCc
Q 028143 102 HIYTSGASGT 111 (213)
Q Consensus 102 ~i~TSGA~Gt 111 (213)
-+||||.||.
T Consensus 241 il~TSGTTG~ 250 (625)
T TIGR02188 241 ILYTSGSTGK 250 (625)
T ss_pred EEecCCCCCC
Confidence 3799999996
No 156
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.71 E-value=93 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=22.6
Q ss_pred hHHHHHHHhhhHhcCCCCCCCChHHHHhhh
Q 028143 142 ESQELLAKVKTVIEKPHNDHLPLIEASRLC 171 (213)
Q Consensus 142 EsrelLe~V~~lvE~penD~LpL~eAS~lC 171 (213)
---+.++++..+|.+=++..+||.++-.+-
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~y 36 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMY 36 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 345667777777777788899999987654
No 157
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=22.48 E-value=77 Score=28.03 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=8.4
Q ss_pred ceeecCCCCc
Q 028143 102 HIYTSGASGT 111 (213)
Q Consensus 102 ~i~TSGA~Gt 111 (213)
.++|||+||.
T Consensus 188 i~~TSGTTG~ 197 (527)
T TIGR02275 188 FQLSGGSTGT 197 (527)
T ss_pred EEeCCCCCCC
Confidence 3689999996
No 158
>PRK14071 6-phosphofructokinase; Provisional
Probab=22.43 E-value=48 Score=30.47 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=13.6
Q ss_pred eeecCC--CCchHHHHHhhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALRA 122 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalra 122 (213)
|+|||+ .|.||| |||+.+.
T Consensus 9 IltsGG~apGmNa~-i~~vv~~ 29 (360)
T PRK14071 9 ILTSGGDCAGLNAV-IRAVVHR 29 (360)
T ss_pred EECCCCCchhHHHH-HHHHHHH
Confidence 689997 789974 5665554
No 159
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=22.34 E-value=84 Score=28.49 Aligned_cols=9 Identities=67% Similarity=1.128 Sum_probs=8.1
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
+||||.||.
T Consensus 205 l~TSGTTG~ 213 (600)
T PRK08279 205 IYTSGTTGL 213 (600)
T ss_pred EEcCCCCCC
Confidence 799999995
No 160
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=22.34 E-value=2.2e+02 Score=22.40 Aligned_cols=32 Identities=19% Similarity=0.089 Sum_probs=16.5
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHHH
Q 028143 67 QQGPRAIGFFGTRNMGFMHQELIEILSYALVI 98 (213)
Q Consensus 67 q~g~rria~lGsRhv~~~hq~LIEllsyAlvl 98 (213)
++|.|+|+++|+..-...++.-++=+..++..
T Consensus 113 ~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~ 144 (264)
T cd06274 113 AAPPEEVLFLGGLPELSPSRERLAGFRQALAD 144 (264)
T ss_pred HCCCCcEEEEeCCCcccchHHHHHHHHHHHHH
Confidence 36777777776544322333344444444443
No 161
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=22.26 E-value=1e+02 Score=29.32 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=27.6
Q ss_pred eccccCCCC-----hh-HHHHHHHHHhcCCceEEEeccc
Q 028143 47 VSEFKPVPD-----VD-YLQELLAIQQQGPRAIGFFGTR 79 (213)
Q Consensus 47 ~~~~~~~p~-----~D-~lqELaaIQq~g~rria~lGsR 79 (213)
..++.+.|. +| ++.|+..+-+.|-|.|.+||.-
T Consensus 46 ~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp 84 (330)
T COG0113 46 KEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVP 84 (330)
T ss_pred ccccCCCCCceeccHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 456667776 57 8899999999999999999975
No 162
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.26 E-value=93 Score=23.28 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=25.5
Q ss_pred HHHHHHhhhHhcCCCCCCCChHHHHhhhhH--HHHhhhce
Q 028143 144 QELLAKVKTVIEKPHNDHLPLIEASRLCNM--DIISHVQQ 181 (213)
Q Consensus 144 relLe~V~~lvE~penD~LpL~eAS~lCN~--eIisr~qQ 181 (213)
-+.++++..+|++=++.++||.++..+-.. +++..|++
T Consensus 9 Eeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k~C~~ 48 (76)
T PRK14068 9 EEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDT 48 (76)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777889999999776543 34444443
No 163
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=22.17 E-value=41 Score=29.93 Aligned_cols=10 Identities=50% Similarity=0.634 Sum_probs=8.4
Q ss_pred ceeecCCCCc
Q 028143 102 HIYTSGASGT 111 (213)
Q Consensus 102 ~i~TSGA~Gt 111 (213)
-++|||+||.
T Consensus 125 i~~TSGTTG~ 134 (452)
T PRK07445 125 MIPTGGSSGQ 134 (452)
T ss_pred EEeCCCCCCC
Confidence 3689999995
No 164
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=22.05 E-value=88 Score=28.70 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=24.0
Q ss_pred CceEEEecccccchhHHHHHHHHHHHHHHhcCceee
Q 028143 70 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT 105 (213)
Q Consensus 70 ~rria~lGsRhv~~~hq~LIEllsyAlvl~gn~i~T 105 (213)
.++|||+|.-+||.. |+.+|+..||+++-
T Consensus 3 ~~kI~VIGlG~~G~~-------~A~~La~~G~~V~~ 31 (415)
T PRK11064 3 FETISVIGLGYIGLP-------TAAAFASRQKQVIG 31 (415)
T ss_pred ccEEEEECcchhhHH-------HHHHHHhCCCEEEE
Confidence 478999999999974 78888888988753
No 165
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=22.00 E-value=46 Score=33.73 Aligned_cols=18 Identities=50% Similarity=0.826 Sum_probs=13.3
Q ss_pred eeecCC--CCchHHHHHhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALR 121 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalr 121 (213)
|+|||+ .|.||| |||+.|
T Consensus 5 IltsGGdapGmNaa-Iravv~ 24 (745)
T TIGR02478 5 VLTSGGDAQGMNAA-VRAVVR 24 (745)
T ss_pred EEecCCCcHHHHHH-HHHHHH
Confidence 789998 899974 455554
No 166
>PRK02948 cysteine desulfurase; Provisional
Probab=21.89 E-value=1.2e+02 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=20.8
Q ss_pred HHHHHHHHHHH-HHhcCceeecCCCCchHHHHHhhhh
Q 028143 86 QELIEILSYAL-VITKNHIYTSGASGTNAAVIRGALR 121 (213)
Q Consensus 86 q~LIEllsyAl-vl~gn~i~TSGA~GtNaAvIRGalr 121 (213)
..+-|.++.-+ +-..+-++|||++..|.+++++.++
T Consensus 46 ~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~ 82 (381)
T PRK02948 46 QVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN 82 (381)
T ss_pred HHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 34444444333 2234566777777777777777664
No 167
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=21.85 E-value=1.6e+02 Score=26.45 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=21.5
Q ss_pred CCCChh-HHHHHHHHHhcCCceEEEecccccch
Q 028143 52 PVPDVD-YLQELLAIQQQGPRAIGFFGTRNMGF 83 (213)
Q Consensus 52 ~~p~~D-~lqELaaIQq~g~rria~lGsRhv~~ 83 (213)
-+|++| .+-|..-|+. +.|.|||+..|-...
T Consensus 15 vIanvd~~l~~kL~l~~-~~~SIGIit~~s~a~ 46 (217)
T PRK15405 15 VIANVNAGLARELKLPP-HIRSLGLITADSDDV 46 (217)
T ss_pred EecCCCHHHHHHcCCCc-cCCeEEEEEecCcch
Confidence 455665 4445455555 678999999998873
No 168
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=21.85 E-value=42 Score=31.81 Aligned_cols=9 Identities=56% Similarity=1.121 Sum_probs=8.2
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
+||||.||.
T Consensus 270 iyTSGTTG~ 278 (700)
T PTZ00216 270 MYTSGTTGD 278 (700)
T ss_pred EEeCCCCCc
Confidence 799999995
No 169
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=21.80 E-value=1.3e+02 Score=25.00 Aligned_cols=20 Identities=0% Similarity=-0.167 Sum_probs=12.0
Q ss_pred hcCCCCCCCChHHHHhhhhH
Q 028143 154 IEKPHNDHLPLIEASRLCNM 173 (213)
Q Consensus 154 vE~penD~LpL~eAS~lCN~ 173 (213)
+.+|...-.|+.+-..+|..
T Consensus 112 ~~~~~G~~~~~~~i~~l~~~ 131 (352)
T cd00616 112 PVHLYGNPADMDAIMAIAKR 131 (352)
T ss_pred EECCCCCcCCHHHHHHHHHH
Confidence 34555555667777777754
No 170
>PLN02651 cysteine desulfurase
Probab=21.80 E-value=1.1e+02 Score=26.24 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHH-hcCceeecCCCCchHHHHHhhhhhcCCCceeEeec
Q 028143 87 ELIEILSYALVI-TKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP 133 (213)
Q Consensus 87 ~LIEllsyAlvl-~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLP 133 (213)
.+-+.++.-+-. .++-++|||+|..+..+++++++...+.--.||.+
T Consensus 47 ~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~ 94 (364)
T PLN02651 47 KARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITT 94 (364)
T ss_pred HHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEc
Confidence 344555554432 34678899888887788888876422211245554
No 171
>PF13884 Peptidase_S74: Chaperone of endosialidase; PDB: 3GUD_A.
Probab=21.69 E-value=54 Score=21.89 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=10.7
Q ss_pred ecccccchhHHHHHHHH
Q 028143 76 FGTRNMGFMHQELIEIL 92 (213)
Q Consensus 76 lGsRhv~~~hq~LIEll 92 (213)
-+.+|+||+.|++.|++
T Consensus 40 ~~~~~~G~IAQev~~v~ 56 (58)
T PF13884_consen 40 EDRRHIGFIAQEVQEVF 56 (58)
T ss_dssp GS--EEE--HHHHHHHH
T ss_pred CCceEEEEeHHHHHHhC
Confidence 35589999999999875
No 172
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=21.67 E-value=98 Score=26.87 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHh--cCceeecCCCCchHHHHHhhhhhcCCC
Q 028143 85 HQELIEILSYALVIT--KNHIYTSGASGTNAAVIRGALRAERPD 126 (213)
Q Consensus 85 hq~LIEllsyAlvl~--gn~i~TSGA~GtNaAvIRGalrae~p~ 126 (213)
.++|.|.|+.-+-.. .+-++|+|++-.|.+++|.+....+.+
T Consensus 87 ~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ 130 (398)
T PRK03244 87 QIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTK 130 (398)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCe
Confidence 456666666543222 367888898888889999877653333
No 173
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.67 E-value=1.7e+02 Score=28.19 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=31.5
Q ss_pred hh-HHHHHHHHHhcCCceEEEecccccch-hHHHHHHHHHHHH
Q 028143 56 VD-YLQELLAIQQQGPRAIGFFGTRNMGF-MHQELIEILSYAL 96 (213)
Q Consensus 56 ~D-~lqELaaIQq~g~rria~lGsRhv~~-~hq~LIEllsyAl 96 (213)
.| +++|..++.+.|-++|++.|.+|-|- .-..+.|++....
T Consensus 117 ~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~ 159 (469)
T PRK09613 117 QEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIY 159 (469)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 45 99999999999999999999999443 3455666665443
No 174
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.59 E-value=2.4e+02 Score=25.76 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=30.8
Q ss_pred hh-HHHHHHHHHh-cCCceEEEe-cccccchhHHHHHHHHHHHHHHhcCceeecCC
Q 028143 56 VD-YLQELLAIQQ-QGPRAIGFF-GTRNMGFMHQELIEILSYALVITKNHIYTSGA 108 (213)
Q Consensus 56 ~D-~lqELaaIQq-~g~rria~l-GsRhv~~~hq~LIEllsyAlvl~gn~i~TSGA 108 (213)
+| +++.|.++++ .|+..|+++ |+-+.+.....+... ..+-++.++++.+++.
T Consensus 79 l~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~Gs~~~~~~~~ 133 (477)
T cd02759 79 LDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWI-RFVRLFGSPNLFLSGE 133 (477)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHH-HHHHhcCCCcccCCcc
Confidence 56 6677888876 699999997 766666444433321 1112345555555443
No 175
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=21.57 E-value=50 Score=25.60 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=24.5
Q ss_pred HHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHhh
Q 028143 97 VITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVK 151 (213)
Q Consensus 97 vl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQp~EsrelLe~V~ 151 (213)
+..|+.||+||-.|.+. + =.++.|..+..|.+..-+-|++++
T Consensus 22 v~~g~~v~vSGq~~~d~------------~-g~~~~~~d~~~Q~~~~l~ni~~iL 63 (127)
T TIGR03610 22 TLADGVVYVSGTLPFDK------------D-NNVVHVGDAAAQTRHVLETIKSVI 63 (127)
T ss_pred EEECCEEEEeccCCcCC------------C-CCeeCCCCHHHHHHHHHHHHHHHH
Confidence 34689999999887643 2 122345666655555444444443
No 176
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.55 E-value=48 Score=29.90 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=14.0
Q ss_pred eeecCC--CCchHHHHHhhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALRA 122 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalra 122 (213)
|+|||+ .|.|| +|||+.+.
T Consensus 4 IltsGG~apG~Na-~i~~vv~~ 24 (301)
T TIGR02482 4 ILTSGGDAPGMNA-AIRAVVRT 24 (301)
T ss_pred EEccCCCcHHHHH-HHHHHHHH
Confidence 689997 78886 46776663
No 177
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=21.53 E-value=2e+02 Score=25.31 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhhcCCCceeEeeccc
Q 028143 83 FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQS 135 (213)
Q Consensus 83 ~~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQS 135 (213)
|=-.-+.-++..|.......|+|-|+++-|.+.-=.+.-+..-=-.+|++|..
T Consensus 53 ~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~ 105 (329)
T PRK14045 53 NKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGK 105 (329)
T ss_pred chHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 44455666778888777778998888777765544444443444589999953
No 178
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=21.52 E-value=91 Score=28.20 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=8.1
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
+||||.||.
T Consensus 189 ~~TSGTTG~ 197 (539)
T PRK06334 189 LFTSGTEKL 197 (539)
T ss_pred EECCCCCCC
Confidence 789999995
No 179
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=21.50 E-value=4e+02 Score=20.74 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=7.0
Q ss_pred cCCceEEEecc
Q 028143 68 QGPRAIGFFGT 78 (213)
Q Consensus 68 ~g~rria~lGs 78 (213)
.|.|+|+++|+
T Consensus 114 ~g~~~i~~l~~ 124 (268)
T cd06298 114 NGHKKIAFISG 124 (268)
T ss_pred cCCceEEEEeC
Confidence 46667777654
No 180
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=21.48 E-value=90 Score=28.68 Aligned_cols=9 Identities=44% Similarity=0.674 Sum_probs=8.0
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
+||||.||.
T Consensus 186 ~~TSGTTG~ 194 (631)
T PRK07769 186 QYTSGSTRI 194 (631)
T ss_pred EeCCCCCCC
Confidence 699999995
No 181
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=21.37 E-value=48 Score=30.06 Aligned_cols=18 Identities=56% Similarity=0.931 Sum_probs=13.9
Q ss_pred eeecCC--CCchHHHHHhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALR 121 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalr 121 (213)
|+|||+ .|.|+ +|||+.|
T Consensus 4 IltsGG~apGmN~-~i~~~v~ 23 (324)
T TIGR02483 4 VLTGGGDCPGLNA-VIRGVVR 23 (324)
T ss_pred EECCCCCcHHHHH-HHHHHHH
Confidence 789997 78887 4677766
No 182
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=21.33 E-value=83 Score=26.59 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=11.0
Q ss_pred CCCCCCChHHHHhhhhH
Q 028143 157 PHNDHLPLIEASRLCNM 173 (213)
Q Consensus 157 penD~LpL~eAS~lCN~ 173 (213)
|...-+|+.+-.++|..
T Consensus 170 ptG~~~~~~~l~~l~~~ 186 (361)
T PRK00950 170 PTGNLIPEEDIRKILES 186 (361)
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 33466777777777753
No 183
>PRK05857 acyl-CoA synthetase; Validated
Probab=21.28 E-value=44 Score=29.94 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.8
Q ss_pred eeecCCCCch
Q 028143 103 IYTSGASGTN 112 (213)
Q Consensus 103 i~TSGA~GtN 112 (213)
+||||+||.-
T Consensus 175 ~~TSGTTG~P 184 (540)
T PRK05857 175 IFTSGTTGEP 184 (540)
T ss_pred EeCCCCCCCC
Confidence 7999999983
No 184
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=21.25 E-value=1.6e+02 Score=20.49 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCceEEEecc--------cccchhHHHHHHHHH-HHHHHhcCceeecCCCCchHHH
Q 028143 58 YLQELLAIQQQGPRAIGFFGT--------RNMGFMHQELIEILS-YALVITKNHIYTSGASGTNAAV 115 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGs--------Rhv~~~hq~LIElls-yAlvl~gn~i~TSGA~GtNaAv 115 (213)
|..||.++++..+.++-++-+ -+.++++..+.|-+. ......+.++|..|..+...+|
T Consensus 41 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v 107 (109)
T PF00175_consen 41 FRDELEALAQEYPNRFHVVYVSSPDDGWDGFKGRVTDLLLEDLLPEKIDPDDTHVYICGPPPMMKAV 107 (109)
T ss_dssp THHHHHHHHHHSTTCEEEEEETTTTSSTTSEESSHHHHHHHHHHHHHHCTTTEEEEEEEEHHHHHHH
T ss_pred chhHHHHHHhhcccccccccccccccccCCceeehhHHHHHhhcccccCCCCCEEEEECCHHHHHHh
Confidence 778888888888765433311 124566666654333 2445677888988877766655
No 185
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=21.21 E-value=43 Score=29.84 Aligned_cols=9 Identities=33% Similarity=0.774 Sum_probs=8.3
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
+||||.||+
T Consensus 190 l~TSGTTG~ 198 (546)
T PLN02330 190 PFSSGTTGI 198 (546)
T ss_pred EeCCCCcCC
Confidence 699999997
No 186
>PRK09082 methionine aminotransferase; Validated
Probab=21.18 E-value=1.1e+02 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHHHHHh----cCceeecCCCCchHHHHHhhhh
Q 028143 82 GFMHQELIEILSYALVIT----KNHIYTSGASGTNAAVIRGALR 121 (213)
Q Consensus 82 ~~~hq~LIEllsyAlvl~----gn~i~TSGA~GtNaAvIRGalr 121 (213)
+-+.+.+.+.++.-.... .|-++|+|+++....++++.+.
T Consensus 70 ~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~ 113 (386)
T PRK09082 70 AALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVR 113 (386)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcC
Confidence 334555555554322221 2567788888777777776654
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=21.15 E-value=2.7e+02 Score=18.78 Aligned_cols=118 Identities=12% Similarity=0.190 Sum_probs=64.5
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHH-hcCceeecCCCCchHHHHHhhhh---------hcCCCceeEeeccc
Q 028143 66 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVI-TKNHIYTSGASGTNAAVIRGALR---------AERPDLLTVILPQS 135 (213)
Q Consensus 66 Qq~g~rria~lGsRhv~~~hq~LIEllsyAlvl-~gn~i~TSGA~GtNaAvIRGalr---------ae~p~lLTViLPQS 135 (213)
+..+.+.+.|.|..-+|=++ +...+.+.+.. ..+.++.+.....+...+.+... .....--.+++-..
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~--l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe 92 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTT--LARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDE 92 (151)
T ss_pred hCCCCCeEEEECCCCCCHHH--HHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeC
Confidence 34467789999999999884 66666665543 45566666665555554443332 01222234566566
Q ss_pred ccCCChhHHHHHHHhhhHhcCC--CCCCCChHHHHhhh-----hHHHHhhhceeeeE
Q 028143 136 LKKQPPESQELLAKVKTVIEKP--HNDHLPLIEASRLC-----NMDIISHVQQVICF 185 (213)
Q Consensus 136 L~kQp~EsrelLe~V~~lvE~p--enD~LpL~eAS~lC-----N~eIisr~qQlIcF 185 (213)
.++-+++..+.+.+++...... .+...+...++.-. +..+.+|+++.|.|
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 93 IDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeec
Confidence 6665666666555555544332 12334443333322 24566677655554
No 188
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=20.90 E-value=95 Score=27.41 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.2
Q ss_pred cCceeecCCCCchHHHHHhhhhhcC
Q 028143 100 KNHIYTSGASGTNAAVIRGALRAER 124 (213)
Q Consensus 100 gn~i~TSGA~GtNaAvIRGalrae~ 124 (213)
.+-++|+|+|..+.+++++.+...|
T Consensus 61 ~~~~~~~g~t~al~~al~al~~~Gd 85 (363)
T TIGR01437 61 EDAVIVSSASAGIAQSVAAVITRGN 85 (363)
T ss_pred CeEEEEcCHHHHHHHHHHHHhcCCC
Confidence 4789999999999999999986644
No 189
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=20.90 E-value=44 Score=31.41 Aligned_cols=9 Identities=56% Similarity=1.117 Sum_probs=8.2
Q ss_pred eeecCCCCc
Q 028143 103 IYTSGASGT 111 (213)
Q Consensus 103 i~TSGA~Gt 111 (213)
+||||.||.
T Consensus 226 ~yTSGTTG~ 234 (660)
T PLN02861 226 MYTSGTTGE 234 (660)
T ss_pred EecCCCCCC
Confidence 799999995
No 190
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=20.88 E-value=53 Score=33.66 Aligned_cols=18 Identities=50% Similarity=0.826 Sum_probs=12.9
Q ss_pred eeecCC--CCchHHHHHhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALR 121 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalr 121 (213)
|+|||+ .|.||| |||+.|
T Consensus 8 IltSGGdapGmNaa-Iravvr 27 (762)
T cd00764 8 VLTSGGDAQGMNAA-VRAVVR 27 (762)
T ss_pred EEccCCCchhHhHH-HHHHHH
Confidence 689997 899984 344444
No 191
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=20.76 E-value=53 Score=33.62 Aligned_cols=19 Identities=53% Similarity=0.737 Sum_probs=14.6
Q ss_pred eeecCC--CCchHHHHHhhhhh
Q 028143 103 IYTSGA--SGTNAAVIRGALRA 122 (213)
Q Consensus 103 i~TSGA--~GtNaAvIRGalra 122 (213)
|+|||+ .|.||| |||+.|.
T Consensus 394 IltsGG~apGmNaa-iravv~~ 414 (762)
T cd00764 394 IVNVGAPAAGMNAA-VRSAVRY 414 (762)
T ss_pred EEecCCCchhHHHH-HHHHHHH
Confidence 799998 899984 4777654
No 192
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=20.55 E-value=2.1e+02 Score=23.15 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=20.6
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHHH
Q 028143 65 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 98 (213)
Q Consensus 65 IQq~g~rria~lGsRhv~~~hq~LIEllsyAlvl 98 (213)
+-++|.++|+|++..+-.-.++.-.+=...++..
T Consensus 147 l~~~G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~ 180 (309)
T PRK11041 147 LHELGHKRIACIAGPEEMPLCHYRLQGYVQALRR 180 (309)
T ss_pred HHHcCCceEEEEeCCccccchHHHHHHHHHHHHH
Confidence 3457999999997665433444445555555543
No 193
>PRK05764 aspartate aminotransferase; Provisional
Probab=20.53 E-value=1e+02 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=14.6
Q ss_pred cCceeecCCCCchHHHHHhhhhh
Q 028143 100 KNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 100 gn~i~TSGA~GtNaAvIRGalra 122 (213)
++-++|+|+++...++++..++.
T Consensus 92 ~~i~~~~g~~~a~~~~~~~~~~~ 114 (393)
T PRK05764 92 SQVIVTTGAKQALYNAFMALLDP 114 (393)
T ss_pred HHEEEeCCcHHHHHHHHHHhcCC
Confidence 45667777766666666666543
No 194
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=20.53 E-value=1.1e+02 Score=25.96 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHhcCceeecCCCCchHHHHHhhhhh
Q 028143 84 MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 122 (213)
Q Consensus 84 ~hq~LIEllsyAlvl~gn~i~TSGA~GtNaAvIRGalra 122 (213)
+.+.+-+.++.-+-...+-++||| +..|.+++++.++.
T Consensus 88 l~~~l~~~la~~~g~~~~i~~tsG-~~a~~~~~~~l~~~ 125 (397)
T PRK06939 88 LHKELEEKLAKFLGTEDAILYSSC-FDANGGLFETLLGK 125 (397)
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCh-HHHHHHHHHHhCCC
Confidence 456666666655544455677777 44566677776543
No 195
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=20.40 E-value=2.2e+02 Score=24.72 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=22.8
Q ss_pred cCceeecCCCCchHHHHHhhhhh----cCCCceeEeecc
Q 028143 100 KNHIYTSGASGTNAAVIRGALRA----ERPDLLTVILPQ 134 (213)
Q Consensus 100 gn~i~TSGA~GtNaAvIRGalra----e~p~lLTViLPQ 134 (213)
++-++|+|++-.|.++||-|... -+++.-.||.+.
T Consensus 89 ~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~ 127 (389)
T PRK01278 89 DKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFE 127 (389)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 46688888888888888877432 234444565543
No 196
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=20.39 E-value=1.2e+02 Score=25.60 Aligned_cols=76 Identities=20% Similarity=0.133 Sum_probs=45.8
Q ss_pred ceeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC----------------------------C-----hhHHHHHH
Q 028143 102 HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ----------------------------P-----PESQELLA 148 (213)
Q Consensus 102 ~i~TSGA~GtNaAvIRGalrae~p~lLTViLPQSL~kQ----------------------------p-----~EsrelLe 148 (213)
||||.-+.|-+.|++.=|+|| --.=..|++=|-|+-. + ...++.++
T Consensus 9 ~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 87 (173)
T TIGR00708 9 IVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAWQ 87 (173)
T ss_pred EEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHHH
Confidence 456666666666666666666 3333455444444432 1 22445666
Q ss_pred HhhhHhcCCCCCCCChHHHHhhhhHHHHhh
Q 028143 149 KVKTVIEKPHNDHLPLIEASRLCNMDIISH 178 (213)
Q Consensus 149 ~V~~lvE~penD~LpL~eAS~lCN~eIisr 178 (213)
....++...+-|-+=|+|.....|..+|+.
T Consensus 88 ~a~~~l~~~~~DlvVLDEi~~A~~~gli~~ 117 (173)
T TIGR00708 88 HAKEMLADPELDLVLLDELTYALKYGYLDV 117 (173)
T ss_pred HHHHHHhcCCCCEEEehhhHHHHHCCCcCH
Confidence 777777777788888888877777666654
No 197
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=20.39 E-value=47 Score=30.71 Aligned_cols=10 Identities=40% Similarity=0.870 Sum_probs=8.7
Q ss_pred ceeecCCCCc
Q 028143 102 HIYTSGASGT 111 (213)
Q Consensus 102 ~i~TSGA~Gt 111 (213)
.+||||.||.
T Consensus 268 ilyTSGTTG~ 277 (655)
T PRK03584 268 ILYSSGTTGL 277 (655)
T ss_pred EEecCCCCCC
Confidence 3799999997
No 198
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.37 E-value=5.2e+02 Score=21.70 Aligned_cols=119 Identities=20% Similarity=0.244 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCceEEEeccc--ccchhHHHHHHHHHHHHHHhcCc---eeecCCCCchHHHHHhhhhhc--CCCceeE
Q 028143 58 YLQELLAIQQQGPRAIGFFGTR--NMGFMHQELIEILSYALVITKNH---IYTSGASGTNAAVIRGALRAE--RPDLLTV 130 (213)
Q Consensus 58 ~lqELaaIQq~g~rria~lGsR--hv~~~hq~LIEllsyAlvl~gn~---i~TSGA~GtNaAvIRGalrae--~p~lLTV 130 (213)
+.+-+.-+-+.|-+-|.++||- -..+.-.+-.+++..+....+.+ ++..|+..|.. +|+=|-.|+ ..+-+-|
T Consensus 20 ~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~-~i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 20 LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE-AIELARHAEEAGADGVLV 98 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH-HHHHHHHHHHcCCCEEEE
Confidence 4444555556799999999983 34455555566665555544433 34444444443 444333333 4555555
Q ss_pred eecccccCCChhHHHHHHHhhhHhcC----------CC--CCCCChHHHHhhhhHHHHhhhceeeeEe
Q 028143 131 ILPQSLKKQPPESQELLAKVKTVIEK----------PH--NDHLPLIEASRLCNMDIISHVQQVICFA 186 (213)
Q Consensus 131 iLPQSL~kQp~EsrelLe~V~~lvE~----------pe--nD~LpL~eAS~lCN~eIisr~qQlIcFA 186 (213)
+|...-+. ...++++-...+.|. |. .-.+|.....+|+. +..++++=
T Consensus 99 -~pP~y~~~--~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~------~~~v~giK 157 (281)
T cd00408 99 -VPPYYNKP--SQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE------HPNIVGIK 157 (281)
T ss_pred -CCCcCCCC--CHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc------CCCEEEEE
Confidence 45555552 235566666666664 22 35667666666652 45666553
No 199
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=20.09 E-value=1.3e+02 Score=25.32 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHh-cC-ceeecCCCCchHHHHHhhh
Q 028143 85 HQELIEILSYALVIT-KN-HIYTSGASGTNAAVIRGAL 120 (213)
Q Consensus 85 hq~LIEllsyAlvl~-gn-~i~TSGA~GtNaAvIRGal 120 (213)
++++.|.++.-+-.. .+ -++|+|++..+..++++.+
T Consensus 34 ~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~ 71 (356)
T cd06451 34 MDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL 71 (356)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC
Confidence 556666665555442 22 2355555555556665554
No 200
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=20.02 E-value=1.2e+02 Score=26.29 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHhcCceeecCCC--CchHHHHHhhhhhcCCCceeEee
Q 028143 95 ALVITKNHIYTSGAS--GTNAAVIRGALRAERPDLLTVIL 132 (213)
Q Consensus 95 Alvl~gn~i~TSGA~--GtNaAvIRGalrae~p~lLTViL 132 (213)
+++..|-+|..+|.. |+-.|.|+...|. .|.-||++-
T Consensus 13 ~~I~DG~ti~~gGf~~~~~P~ali~al~r~-~~~dLtli~ 51 (219)
T PRK09920 13 GFFRDGMTIMVGGFMGIGTPSRLVEALLES-GVRDLTLIA 51 (219)
T ss_pred hcCCCCCEEEECcccCcCCHHHHHHHHHhc-CCCceEEEE
Confidence 368899999999875 5888999999988 899999997
Done!