BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028144
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 253 bits (647), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/215 (63%), Positives = 163/215 (75%), Gaps = 10/215 (4%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSAN 68
S D F S+ LCYV CN C T+LAV+VP TSLFKTVTVRCG CTNLL VNMR +LP++N
Sbjct: 15 SPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASN 74
Query: 69 QFHLG---HNFFSPSHNLRE--EIPNPSPNFLINQTNTNDFIVPTRGV--VDELPRPPAT 121
Q L H++F+P L E + P+ ++NQ T + I + E+P+ P
Sbjct: 75 QLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPV 134
Query: 122 SRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDHQ 181
+RPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPD+Q
Sbjct: 135 NRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQ 194
Query: 182 PVKKANVRQQEGED-VLMKDGFF--ASANVGVSPY 213
PVKK N+ QQEGED ++MK+GF+ A+ANVGV+PY
Sbjct: 195 PVKKTNMPQQEGEDNMVMKEGFYAPAAANVGVTPY 229
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 239 bits (610), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 164/224 (73%), Gaps = 25/224 (11%)
Query: 11 DQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPV--NMRGLLLPSAN 68
D F +++QLCYVHC+ CDTVLAVSVP +SLFKTVTVRCGHC+NLL V +MR LLLPS +
Sbjct: 17 DHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVS 76
Query: 69 QFHLGHNFFSPSH-----NLREEIPNPSPNFLINQTNTND---------FIVPTRGV--- 111
LGH+F P NL EE+ + N +N ++ ++ TR
Sbjct: 77 N--LGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSV 134
Query: 112 --VDELPRPPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169
+ E+PRPP +RPPEKRQRVPSAYNRFIK+EIQRIKAGNPDISHREAFSAAAKNWAHF
Sbjct: 135 DHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHF 194
Query: 170 PHIHFGLVPDHQPVKKANVRQQEGEDVLM-KDGFFAS-ANVGVS 211
PHIHFGL+ DH P KKANVRQQEGED +M ++GF+ S ANVGV+
Sbjct: 195 PHIHFGLMADHPPTKKANVRQQEGEDGMMGREGFYGSAANVGVA 238
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/266 (50%), Positives = 161/266 (60%), Gaps = 54/266 (20%)
Query: 1 MSSSSTTLSLDQFPT-----------SEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCG 49
MSS+ T SLD EQLCYVHCN CDT+LAV VPC+SLFKTVTVRCG
Sbjct: 2 MSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCG 61
Query: 50 HCTNLLPVNMRGLLLPSA----NQFHLGHNFFSPS--HNLREEIPN-----------PSP 92
HC NLL VN+RGLLLP+A NQ G SP+ H L +E+P+ SP
Sbjct: 62 HCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASP 121
Query: 93 NFLI----------NQTNTNDFIVPTRGVVDELPRP---PATSRPPEKRQRVPSAYNRFI 139
N N T+ + E +P P+ +R EKRQRVPSAYNRFI
Sbjct: 122 NVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFI 181
Query: 140 KDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQE--GEDVL 197
KDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHFGL+PD Q +KK ++ Q+ GE +L
Sbjct: 182 KDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPD-QGLKKTGIQSQDGAGECML 240
Query: 198 MKDGFF----------ASANVGVSPY 213
KDG + A++++GV+P+
Sbjct: 241 FKDGLYAAAAAAAAATAASSMGVTPF 266
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/266 (50%), Positives = 161/266 (60%), Gaps = 54/266 (20%)
Query: 1 MSSSSTTLSLDQFPT-----------SEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCG 49
MSS+ T SLD EQLCYVHCN CDT+LAV VPC+SLFKTVTVRCG
Sbjct: 2 MSSAPETFSLDHLSQHQQQQPPPLAEQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCG 61
Query: 50 HCTNLLPVNMRGLLLPSA----NQFHLGHNFFSPS--HNLREEIPN-----------PSP 92
HC NLL VN+RGLLLP+A NQ G SP+ H L +E+P+ SP
Sbjct: 62 HCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASP 121
Query: 93 NFLI----------NQTNTNDFIVPTRGVVDELPRP---PATSRPPEKRQRVPSAYNRFI 139
N N T+ + E +P P+ +R EKRQRVPSAYNRFI
Sbjct: 122 NVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFI 181
Query: 140 KDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQE--GEDVL 197
KDEIQRIKA NPDI+HREAFSAAAKNWAHFPHIHFGL+PD Q +KK ++ Q+ GE +L
Sbjct: 182 KDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPD-QGLKKTGIQSQDGAGECML 240
Query: 198 MKDGFF----------ASANVGVSPY 213
KDG + A++++GV+P+
Sbjct: 241 FKDGLYAAAAAAAAATAASSMGVTPF 266
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 228 bits (582), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/236 (55%), Positives = 157/236 (66%), Gaps = 39/236 (16%)
Query: 16 SEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSA-----NQF 70
+EQLCYVHCN CDT+LAV VPC+SLFKTVTVRCGHC NLL VN+RGLLLP+ NQ
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 71 HLGHNFFSPS--HNLREEIPNPSPNFLINQTNTNDF-------------------IVPTR 109
H G + SP+ H L +E+ +P+ L+ Q + + P +
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 110 GVVDE--LPR--PPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 165
V E LP+ P + +RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 166 WAHFPHIHFGLVPDHQPVKKANVRQQEGEDVLMKDGFF--------ASANVGVSPY 213
WAHFPHIHFGL+PD Q KK Q ED+L+KD + A+AN+GV+P+
Sbjct: 202 WAHFPHIHFGLMPD-QGFKKTFKPQDGSEDILLKDSLYAAAAAAAAAAANMGVTPF 256
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 228 bits (582), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/236 (55%), Positives = 157/236 (66%), Gaps = 39/236 (16%)
Query: 16 SEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSA-----NQF 70
+EQLCYVHCN CDT+LAV VPC+SLFKTVTVRCGHC NLL VN+RGLLLP+ NQ
Sbjct: 22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQL 81
Query: 71 HLGHNFFSPS--HNLREEIPNPSPNFLINQTNTNDF-------------------IVPTR 109
H G + SP+ H L +E+ +P+ L+ Q + + P +
Sbjct: 82 HFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAK 141
Query: 110 GVVDE--LPR--PPATSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 165
V E LP+ P + +RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN
Sbjct: 142 PVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 201
Query: 166 WAHFPHIHFGLVPDHQPVKKANVRQQEGEDVLMKDGFF--------ASANVGVSPY 213
WAHFPHIHFGL+PD Q KK Q ED+L+KD + A+AN+GV+P+
Sbjct: 202 WAHFPHIHFGLMPD-QGFKKTFKPQDGSEDILLKDSLYAAAAAAAAAAANMGVTPF 256
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/256 (48%), Positives = 153/256 (59%), Gaps = 59/256 (23%)
Query: 17 EQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQF------ 70
EQLCYVHC+ CDTVL VSVP +SLF+TVTVRCGHC++LL VNMRGLLLP+
Sbjct: 58 EQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPP 117
Query: 71 -----------HLGHNF-FSPS-----HNLREEI--PNPSPNFLINQTNTNDFIVP---- 107
H H+ +P+ H+L +EI N L+ Q +
Sbjct: 118 PPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLLLEQHGLGGLMASAASC 177
Query: 108 ----------------TRGVVDELPRPPATS-----RPPEKRQRVPSAYNRFIKDEIQRI 146
++G P T+ RPPEKRQRVPSAYNRFIKDEIQRI
Sbjct: 178 RNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRI 237
Query: 147 KAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDHQPVKKANVRQQEGE--DVLMKDGFF- 203
KAGNPDISHREAFSAAAKNWAHFPHIHFGL+PDHQ +KK ++ Q+ + D L+K+G +
Sbjct: 238 KAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQGLKKTSLLPQDHQRKDGLLKEGLYA 297
Query: 204 ------ASANVGVSPY 213
A+AN+GV+PY
Sbjct: 298 AAAAAAAAANMGVAPY 313
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/185 (51%), Positives = 119/185 (64%), Gaps = 13/185 (7%)
Query: 12 QFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLL-----LPS 66
Q +EQ+CYVHCN C+T+LAVSVP S+ VTVRCGHCTNLL VN+RGL+ L
Sbjct: 4 QIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD 63
Query: 67 ANQFHLGHNFFSPSHNLREEIPNPSPNFLINQTNTNDFIVPTRGVV------DELPRPPA 120
+ HL + S R++ P F +++ + P + ++
Sbjct: 64 HHHHHLQESGLSGC--FRDQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQAL 121
Query: 121 TSRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDH 180
+RPPEKRQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAH+P+IHFGL P H
Sbjct: 122 HARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGH 181
Query: 181 QPVKK 185
+ KK
Sbjct: 182 EGGKK 186
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 105/162 (64%), Gaps = 15/162 (9%)
Query: 16 SEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHLGHN 75
+EQLCY+ CN C+ +LAV+VPC+SLF VTVRCGHCTNL VNM L + N
Sbjct: 8 TEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQATN 67
Query: 76 FFSPSHNLREEIPNPSPNFLINQTNTNDFIVPTRGVVDELPRPPATSRPPEKRQRVPSAY 135
+ P + P+ + +T T IV +RPPEKRQRVPSAY
Sbjct: 68 YAVPEYGSSSRSHTKIPSRISTRTITEQRIV---------------NRPPEKRQRVPSAY 112
Query: 136 NRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLV 177
N+FIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL+
Sbjct: 113 NQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLM 154
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 172 bits (435), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 114/178 (64%), Gaps = 9/178 (5%)
Query: 8 LSLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSA 67
+S P E +CYVHCN C+T+ AVSVP S+ VTVRCGHCT+LL VN+RGL+
Sbjct: 1 MSAQIVPAPEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALP 60
Query: 68 NQFHLGHNFFSPSHNLREEIPNPSPNFLINQTNTNDFIVPTRGVVDELPRPPATSRPPEK 127
+ HL N + + RE N+ +++ VP ++ RPPEK
Sbjct: 61 AEDHLQDNLKMHNMSFRE-------NYSEYGSSSRYGRVPMMFSKNDTEHMLHV-RPPEK 112
Query: 128 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDHQPVKK 185
RQRVPSAYNRFIK+EI+RIKA NPDISHREAFS AAKNWAHFP+IHFGL H+ KK
Sbjct: 113 RQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL-GSHESSKK 169
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 169 bits (429), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/170 (56%), Positives = 115/170 (67%), Gaps = 17/170 (10%)
Query: 15 TSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLL-----PSANQ 69
+SE++CYVHC+ C T+LAVSVP SLF VTVRCGHCTNLL +N+ G+ L P +Q
Sbjct: 6 SSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNI-GVSLHQTSAPPIHQ 64
Query: 70 FHLGHNFFSPSHNLREEIPNPSPNFLINQTNTNDFIVPTRGVVDELPRPPATSRPPEKRQ 129
H + S R++ + S +TN+ + + E PR P RPPEKRQ
Sbjct: 65 DLQPHRQHTTSLVTRKDCASSS-------RSTNNL---SENIDREAPRMPPI-RPPEKRQ 113
Query: 130 RVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPD 179
RVPSAYNRFIK+EIQRIKA NP+ISHREAFS AAKNWAHFPHIHFGL D
Sbjct: 114 RVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLD 163
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 103/169 (60%), Gaps = 24/169 (14%)
Query: 15 TSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHL-- 72
TSE +CYV+CN C+T+L V+VP + VTVRCGHCT +L +++ Q H
Sbjct: 6 TSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQ 65
Query: 73 -----GHNFFSPSHNLREEIPNPSPNFLINQTNTNDFIVPTRGVVDELPRPPATSRPPEK 127
G+NF S R + +T+T + +PT + + RPPEK
Sbjct: 66 NRGFQGNNFGSYDIASRNQ-----------RTSTAMYPMPTSQ------QQVSPIRPPEK 108
Query: 128 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 176
RQRVPSAYNRFIK+EIQRIK NP+ISHREAFSAAAKNWAH P +HFGL
Sbjct: 109 RQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 157
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 94/159 (59%), Gaps = 16/159 (10%)
Query: 10 LDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRG-LLLPSAN 68
+D SE LCYV C C+TVLAV VPC L TVTV+CGHC NL ++ R ++ P +
Sbjct: 1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60
Query: 69 QFHLGHNFFSPSHNLREEIPNPSPNFLINQTNTNDFIVPTRGVVDELPRPPATSRPPEKR 128
H F P + R P P L++ T+ + PR P +PPEK+
Sbjct: 61 TDHPLGPFQGPCTDCRRNQPLP----LVSPTSN-----------EGSPRAPFVVKPPEKK 105
Query: 129 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWA 167
R+PSAYNRF+++EIQRIKA PDI HREAFS AAKNWA
Sbjct: 106 HRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 96/169 (56%), Gaps = 21/169 (12%)
Query: 18 QLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVN-MRGLLLPSANQF------ 70
Q+C+V C C T+L VSVP TSL VTVRCGHCT+LL VN M+ +P
Sbjct: 20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLD 79
Query: 71 HLGHNFFSPSHNLREEI------PNPSPNFLINQTNTNDFIVPTRGVVDELPRPPATSRP 124
G + + + EE SP L++ ++ D V V ++P
Sbjct: 80 ETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQV--------VNKP 131
Query: 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 173
PEKRQR PSAYN FIK+EI+R+KA NP ++H+EAFS AAKNWAHFP H
Sbjct: 132 PEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH 180
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 23/160 (14%)
Query: 14 PTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVN----MRGLLLPSANQ 69
P +E L YV C++C+T+LAV +P + TVTV+CGHC NL + ++G + +
Sbjct: 16 PQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQGHVSLTLQM 75
Query: 70 FHLGHNFFSPSHNLREEIPNPSPNFLINQTNTNDFIVPTRGVVDELPRPPATSRPPEKRQ 129
G + + + S + + + F+V +PP EK+Q
Sbjct: 76 QSFGGSDYKKGSSSSSSS---STSSDQPPSPSPPFVV----------KPP------EKKQ 116
Query: 130 RVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169
R+PSAYNRF++DEIQRIK+ NP+I HREAFSAAAKNWA +
Sbjct: 117 RLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 97.1 bits (240), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 17 EQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHLGHNF 76
E+L V C+ C TVL VSVPC+S+ + V V+CGHC+ +L + +L +
Sbjct: 14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGIL------------SAVNLPPSP 61
Query: 77 FSPSHNL--REEIPNPSPNFLINQTNTNDFIVPTRGVVDELPRPPATSRPPEKR-QRVPS 133
S S L +E P P ++++ +D P A + P R QR PS
Sbjct: 62 VSASIELTPQELDAGPPPGEYSDESSGDDREGRDAEDDAPAPAAAAVANKPPGRKQRTPS 121
Query: 134 AYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 173
AYN F+K+EI+RIK+ P+I+H++AFS AAKNWAH P I
Sbjct: 122 AYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQ 161
>sp|Q9BT81|SOX7_HUMAN Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1
Length = 388
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 118 PPATSRPP-----EKRQRVP-SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 166
PPA RPP E R R P +A+ + KDE +R+ NPD+ + E K+W
Sbjct: 29 PPAVPRPPGDKGSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
>sp|O42601|S17B1_XENLA Transcription factor Sox-17-beta.1 OS=Xenopus laevis GN=sox17b.1
PE=1 SV=1
Length = 373
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 22/100 (22%)
Query: 126 EKRQRVP-SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF------PHI------ 172
E R R P +A+ + KDE +R+ NPD+ + E K+W P +
Sbjct: 55 EGRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKSLTLATKRPFVEEAERL 114
Query: 173 ---HFGLVPDHQ--PVKKANVRQQEGEDVLMKDGFFASAN 207
H PD++ P +K V++ + E+ DGF SAN
Sbjct: 115 RVQHIQDYPDYKYRPRRKKQVKRMKREE----DGFLPSAN 150
>sp|A4WGB3|FDHE_ENT38 Protein FdhE homolog OS=Enterobacter sp. (strain 638) GN=fdhE PE=3
SV=1
Length = 309
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGL 62
S+ Q T++ L Y+HCNLC+T + V ++C +C +N L
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRIKCSNCEQTRDLNYWSL 243
>sp|Q57HI2|FDHE_SALCH Protein FdhE OS=Salmonella choleraesuis (strain SC-B67) GN=fdhE
PE=3 SV=1
Length = 309
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQISTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B5BJF4|FDHE_SALPK Protein FdhE OS=Salmonella paratyphi A (strain AKU_12601) GN=fdhE
PE=3 SV=1
Length = 309
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIDTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q5PKF1|FDHE_SALPA Protein FdhE OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=fdhE PE=3 SV=1
Length = 309
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIDTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|A8AL48|FDHE_CITK8 Protein FdhE homolog OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|P40646|SOX7_MOUSE Transcription factor SOX-7 OS=Mus musculus GN=Sox7 PE=1 SV=2
Length = 380
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 118 PPATSRPP-----EKRQRVP-SAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNW 166
PPA RP E R R P +A+ + KDE +R+ NPD+ + E K+W
Sbjct: 29 PPAVPRPSGDKSSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSW 83
>sp|Q8Z2U4|FDHE_SALTI Protein FdhE OS=Salmonella typhi GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q3YV85|FDHE_SHISS Protein FdhE OS=Shigella sonnei (strain Ss046) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q83PE8|FDHE_SHIFL Protein FdhE homolog OS=Shigella flexneri GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q0SZ81|FDHE_SHIF8 Protein FdhE OS=Shigella flexneri serotype 5b (strain 8401) GN=fdhE
PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q32A61|FDHE_SHIDS Protein FdhE OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B5FP25|FDHE_SALDC Protein FdhE OS=Salmonella dublin (strain CT_02021853) GN=fdhE PE=3
SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B7LVF7|FDHE_ESCF3 Protein FdhE OS=Escherichia fergusonii (strain ATCC 35469 / DSM
13698 / CDC 0568-73) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B6I4N1|FDHE_ECOSE Protein FdhE OS=Escherichia coli (strain SE11) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B7M693|FDHE_ECO8A Protein FdhE OS=Escherichia coli O8 (strain IAI1) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B5YZ28|FDHE_ECO5E Protein FdhE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)
GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q8X8B9|FDHE_ECO57 Protein FdhE OS=Escherichia coli O157:H7 GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B7L9E7|FDHE_ECO55 Protein FdhE OS=Escherichia coli (strain 55989 / EAEC) GN=fdhE PE=3
SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|A7ZUA1|FDHE_ECO24 Protein FdhE OS=Escherichia coli O139:H28 (strain E24377A / ETEC)
GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q8ZKT0|FDHE_SALTY Protein FdhE OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B4TPP6|FDHE_SALSV Protein FdhE OS=Salmonella schwarzengrund (strain CVM19633) GN=fdhE
PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|C0Q3K0|FDHE_SALPC Protein FdhE OS=Salmonella paratyphi C (strain RKS4594) GN=fdhE
PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|A9MZB0|FDHE_SALPB Protein FdhE OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B4SZX8|FDHE_SALNS Protein FdhE OS=Salmonella newport (strain SL254) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B4TBW8|FDHE_SALHS Protein FdhE OS=Salmonella heidelberg (strain SL476) GN=fdhE PE=3
SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B5F008|FDHE_SALA4 Protein FdhE OS=Salmonella agona (strain SL483) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B5RFD8|FDHE_SALG2 Protein FdhE OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)
GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B5QWW9|FDHE_SALEP Protein FdhE OS=Salmonella enteritidis PT4 (strain P125109) GN=fdhE
PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q31UA2|FDHE_SHIBS Protein FdhE OS=Shigella boydii serotype 4 (strain Sb227) GN=fdhE
PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B2TVN6|FDHE_SHIB3 Protein FdhE OS=Shigella boydii serotype 18 (strain CDC 3083-94 /
BS512) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|Q1R424|FDHE_ECOUT Protein FdhE OS=Escherichia coli (strain UTI89 / UPEC) GN=fdhE PE=3
SV=1
Length = 309
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
>sp|B7NFJ2|FDHE_ECOLU Protein FdhE OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=fdhE PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 9 SLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51
S+ Q T++ L Y+HCNLC+T + V V+C +C
Sbjct: 200 SMVQIGTTQGLRYLHCNLCETE----------WHVVRVKCSNC 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,275,540
Number of Sequences: 539616
Number of extensions: 3857734
Number of successful extensions: 8919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 8865
Number of HSP's gapped (non-prelim): 102
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)