Query 028144
Match_columns 213
No_of_seqs 123 out of 183
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 11:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hme_A High mobility group pro 97.9 1.9E-05 6.5E-10 55.3 5.4 47 123-169 2-48 (77)
2 1wz6_A HMG-box transcription f 97.8 2.4E-05 8.2E-10 55.6 5.1 47 123-169 3-49 (82)
3 3nm9_A HMG-D, high mobility gr 97.7 4.5E-05 1.5E-09 53.2 5.1 43 128-170 4-46 (73)
4 2e6o_A HMG box-containing prot 97.7 4.1E-05 1.4E-09 55.3 5.1 47 123-169 13-59 (87)
5 1hry_A Human SRY; DNA, DNA-bin 97.7 3.6E-05 1.2E-09 53.7 4.5 45 125-169 2-46 (76)
6 2cs1_A PMS1 protein homolog 1; 97.7 5.7E-05 2E-09 55.1 5.7 46 124-169 4-49 (92)
7 2crj_A SWI/SNF-related matrix- 97.7 6.3E-05 2.2E-09 54.9 5.8 47 123-169 3-49 (92)
8 1wgf_A Upstream binding factor 97.7 9.1E-05 3.1E-09 53.9 6.6 48 122-169 15-62 (90)
9 2co9_A Thymus high mobility gr 97.7 6.8E-05 2.3E-09 55.9 5.7 47 123-169 13-59 (102)
10 1j46_A SRY, sex-determining re 97.6 7.7E-05 2.6E-09 53.6 5.5 45 125-169 2-46 (85)
11 1wxl_A Single-strand recogniti 97.6 7.6E-05 2.6E-09 52.1 5.2 45 125-169 1-45 (73)
12 4euw_A Transcription factor SO 97.6 9E-05 3.1E-09 55.8 5.4 48 123-170 25-72 (106)
13 1k99_A Upstream binding factor 97.6 8E-05 2.7E-09 55.4 5.0 47 123-169 6-52 (99)
14 2eqz_A High mobility group pro 97.6 0.00011 3.6E-09 53.0 5.3 47 123-169 11-59 (86)
15 3f27_D Transcription factor SO 97.6 9E-05 3.1E-09 52.5 4.7 44 126-169 5-48 (83)
16 1i11_A Transcription factor SO 97.5 0.00014 4.9E-09 51.5 5.7 43 127-169 4-46 (81)
17 4a3n_A Transcription factor SO 97.5 0.00011 3.7E-09 50.3 4.8 42 128-169 3-44 (71)
18 1gt0_D Transcription factor SO 97.5 0.00018 6.3E-09 50.7 5.5 42 128-169 3-44 (80)
19 1ckt_A High mobility group 1 p 97.4 0.00017 5.7E-09 49.6 4.8 42 128-169 2-45 (71)
20 3u2b_C Transcription factor SO 97.4 0.0002 6.8E-09 50.1 4.8 41 129-169 4-44 (79)
21 2gzk_A Sex-determining region 97.4 0.00023 7.7E-09 55.8 5.5 47 123-169 84-130 (159)
22 2lhj_A High mobility group pro 97.3 0.00011 3.8E-09 54.0 2.9 48 122-169 17-66 (97)
23 1aab_A High mobility group pro 97.3 0.00015 5E-09 51.6 3.5 47 123-169 3-51 (83)
24 1cg7_A Protein (NON histone pr 97.3 7.2E-05 2.5E-09 54.8 1.8 47 123-169 16-62 (93)
25 2yrq_A High mobility group pro 97.3 0.00031 1.1E-08 56.0 5.3 47 123-169 97-143 (173)
26 2lef_A LEF-1 HMG, protein (lym 97.2 0.0005 1.7E-08 49.2 5.3 41 129-169 4-44 (86)
27 2d7l_A WD repeat and HMG-box D 97.2 0.00061 2.1E-08 49.6 5.6 42 128-169 6-48 (81)
28 2yrq_A High mobility group pro 97.1 0.00063 2.2E-08 54.2 5.4 48 123-170 11-60 (173)
29 3tq6_A Transcription factor A, 96.8 0.00082 2.8E-08 56.1 4.0 46 125-170 7-52 (214)
30 3tmm_A Transcription factor A, 96.8 0.0009 3.1E-08 56.7 4.0 47 123-169 37-83 (238)
31 2gzk_A Sex-determining region 96.6 0.0025 8.4E-08 49.9 5.1 46 125-170 2-47 (159)
32 3fgh_A Transcription factor A, 96.3 0.003 1E-07 43.1 3.5 38 129-170 4-41 (67)
33 1l8y_A Upstream binding factor 96.2 0.0058 2E-07 46.2 4.8 41 128-169 5-45 (91)
34 1v63_A Nucleolar transcription 95.3 0.025 8.5E-07 42.2 5.1 38 130-169 11-48 (101)
35 1v64_A Nucleolar transcription 95.2 0.021 7.3E-07 43.1 4.5 42 125-170 14-56 (108)
36 3tmm_A Transcription factor A, 94.4 0.011 3.8E-07 50.0 1.2 42 125-170 144-185 (238)
37 3tq6_A Transcription factor A, 94.4 0.012 4E-07 49.1 1.2 42 125-170 112-153 (214)
38 2yuk_A Myeloid/lymphoid or mix 93.8 0.0085 2.9E-07 45.0 -0.6 43 125-169 20-62 (90)
39 2cto_A Novel protein; high mob 90.1 0.11 3.7E-06 38.9 1.5 39 129-169 12-53 (93)
40 2ysl_A Tripartite motif-contai 70.4 2.5 8.6E-05 27.9 2.3 41 1-51 1-41 (73)
41 2ysj_A Tripartite motif-contai 65.8 3.5 0.00012 26.6 2.2 38 1-50 1-40 (63)
42 1wii_A Hypothetical UPF0222 pr 62.1 3.5 0.00012 30.7 1.9 44 22-65 24-67 (85)
43 2fiy_A Protein FDHE homolog; F 58.4 3.1 0.00011 36.9 1.2 29 17-55 204-232 (309)
44 1x0t_A Ribonuclease P protein 56.0 3.5 0.00012 31.8 0.9 34 23-56 67-105 (120)
45 2k3r_A Ribonuclease P protein 52.7 3.6 0.00012 32.0 0.6 34 23-56 62-100 (123)
46 2d74_B Translation initiation 29.6 14 0.00048 29.9 0.6 36 20-61 103-141 (148)
47 2g2k_A EIF-5, eukaryotic trans 29.0 30 0.001 28.6 2.5 38 20-61 95-135 (170)
48 2e2z_A TIM15; protein import, 26.0 24 0.00084 27.2 1.3 32 23-54 15-47 (100)
49 3j20_W 30S ribosomal protein S 23.0 36 0.0012 24.3 1.6 12 22-33 35-46 (63)
50 3ipw_A Hydrolase TATD family p 22.0 1.2E+02 0.004 26.7 5.1 38 128-169 282-319 (325)
51 1pdn_C Protein (PRD paired); p 21.3 84 0.0029 21.5 3.3 30 133-162 74-103 (128)
52 3he5_B Synzip2; heterodimeric 20.7 35 0.0012 23.3 1.1 22 133-154 2-23 (52)
No 1
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.88 E-value=1.9e-05 Score=55.29 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=42.7
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
|-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 48 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 48 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 34666678899999999999999999999999999999999999964
No 2
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.82 E-value=2.4e-05 Score=55.64 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=43.0
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
.+|.+-.|-+|||..|+++.-.+|++++|++++.|.-+.++..|+..
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVL 49 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 35666778899999999999999999999999999999999999964
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.72 E-value=4.5e-05 Score=53.24 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=40.1
Q ss_pred cCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 028144 128 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 128 RQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 170 (213)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 4 PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 46 (73)
T 3nm9_A 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK 46 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 3578999999999999999999999999999999999999864
No 4
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.72 E-value=4.1e-05 Score=55.34 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=43.5
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
+-|.+-.|-++||..|+++.-++|++++|+++..|.-+.++..|+..
T Consensus 13 kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 59 (87)
T 2e6o_A 13 TSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKM 59 (87)
T ss_dssp CCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 56677788999999999999999999999999999999999999965
No 5
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.71 E-value=3.6e-05 Score=53.74 Aligned_cols=45 Identities=16% Similarity=0.359 Sum_probs=40.8
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 125 PEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
|.+-.|-+|||..|+++.-++|++++|+++..|.-+.++..|+..
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 46 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML 46 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhC
Confidence 455567899999999999999999999999999999999999965
No 6
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=5.7e-05 Score=55.10 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=41.4
Q ss_pred CCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 124 PPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 124 PPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
.|.+-.|-+|||..|+++.-.+||++||+++..|.-+.++..|+..
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTL 49 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 3455567899999999999999999999999999999999999964
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.70 E-value=6.3e-05 Score=54.87 Aligned_cols=47 Identities=17% Similarity=0.431 Sum_probs=42.8
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
|-|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKL 49 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 45666678899999999999999999999999999999999999965
No 8
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.70 E-value=9.1e-05 Score=53.93 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=43.6
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 122 SRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 122 ~KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
.+.|.+-.|-++||..|+++.-++|+++||++++.|.-+.++..|+..
T Consensus 15 ~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~l 62 (90)
T 1wgf_A 15 KGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDL 62 (90)
T ss_dssp SSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 356666778899999999999999999999999999999999999964
No 9
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.67 E-value=6.8e-05 Score=55.87 Aligned_cols=47 Identities=30% Similarity=0.498 Sum_probs=43.2
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
+.|.+-.|-++||..|+++.-.+|+++||+++..|.-+.++..|+..
T Consensus 13 kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~l 59 (102)
T 2co9_A 13 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGL 59 (102)
T ss_dssp CCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccC
Confidence 55666778899999999999999999999999999999999999975
No 10
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.64 E-value=7.7e-05 Score=53.56 Aligned_cols=45 Identities=16% Similarity=0.359 Sum_probs=40.9
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 125 PEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
|.+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 46 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML 46 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTS
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Confidence 445567899999999999999999999999999999999999965
No 11
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.63 E-value=7.6e-05 Score=52.07 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=40.9
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 125 PEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
|.+-.|-+|||..|+++.-.+|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 344567899999999999999999999999999999999999975
No 12
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.59 E-value=9e-05 Score=55.78 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=42.0
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 170 (213)
|.|.+-.|-++||..|+++.-.+|++++|++++.|.-+.++..|+..+
T Consensus 25 k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 25 KNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp ---CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 567777889999999999999999999999999999999999998753
No 13
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.58 E-value=8e-05 Score=55.45 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=43.0
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
|.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~l 52 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKEL 52 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 45666678899999999999999999999999999999999999964
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=0.00011 Score=52.95 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=41.3
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISH--REAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~H--kEaFs~aAknW~~~ 169 (213)
+-|.+-.|-+|||..|+++.-++|++++|+++. .|.-+.++..|+..
T Consensus 11 kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~l 59 (86)
T 2eqz_A 11 GDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTM 59 (86)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 345556778999999999999999999999974 99999999999864
No 15
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.55 E-value=9e-05 Score=52.48 Aligned_cols=44 Identities=27% Similarity=0.476 Sum_probs=39.4
Q ss_pred cccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 126 EKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 126 EKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
.|-.|-++||..|+++.-..|++++|++++.|.-+.++..|+..
T Consensus 5 ~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 48 (83)
T 3f27_D 5 SRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKAL 48 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 34467899999999999999999999999999999999999864
No 16
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.54 E-value=0.00014 Score=51.46 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=39.5
Q ss_pred ccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 127 KRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 127 KRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
+-.|-++||..|+++.-+.|++++|++++.|.-+.++..|+..
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 46 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAM 46 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhC
Confidence 3457799999999999999999999999999999999999964
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.53 E-value=0.00011 Score=50.26 Aligned_cols=42 Identities=29% Similarity=0.476 Sum_probs=38.2
Q ss_pred cCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 128 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 128 RQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..
T Consensus 3 ~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (71)
T 4a3n_A 3 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKAL 44 (71)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 357889999999999999999999999999999999999864
No 18
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.48 E-value=0.00018 Score=50.67 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=39.1
Q ss_pred cCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 128 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 128 RQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..
T Consensus 3 pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (80)
T 1gt0_D 3 VKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLL 44 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 357899999999999999999999999999999999999964
No 19
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.45 E-value=0.00017 Score=49.59 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=38.2
Q ss_pred cCCCchhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccC
Q 028144 128 RQRVPSAYNRFIKDEIQRIKAGNPDISH--REAFSAAAKNWAHF 169 (213)
Q Consensus 128 RQR~psayN~fmK~ei~riK~~~P~i~H--kEaFs~aAknW~~~ 169 (213)
-.|-+|||..|+++.-+.||++||+++. .|.-+.++..|+..
T Consensus 2 PKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 45 (71)
T 1ckt_A 2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 45 (71)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhC
Confidence 3578999999999999999999999976 99999999999864
No 20
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.40 E-value=0.0002 Score=50.12 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=38.6
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 129 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 129 QR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
.|-++||..|+++.-..|++++|++++.|.-+.++..|+..
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLL 44 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999864
No 21
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.38 E-value=0.00023 Score=55.84 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=42.6
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
+-|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..
T Consensus 84 kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~l 130 (159)
T 2gzk_A 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 130 (159)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHS
T ss_pred cccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhC
Confidence 44566678899999999999999999999999999999999999964
No 22
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.32 E-value=0.00011 Score=54.00 Aligned_cols=48 Identities=25% Similarity=0.393 Sum_probs=43.9
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccC
Q 028144 122 SRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDIS--HREAFSAAAKNWAHF 169 (213)
Q Consensus 122 ~KPPEKRQR~psayN~fmK~ei~riK~~~P~i~--HkEaFs~aAknW~~~ 169 (213)
.+.|.+-.|-+|||..|+++.-.+|+++||+++ ..|.-+.++..|+..
T Consensus 17 ~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~l 66 (97)
T 2lhj_A 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNAL 66 (97)
T ss_dssp TSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhC
Confidence 356777788999999999999999999999999 999999999999975
No 23
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.32 E-value=0.00015 Score=51.61 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=41.1
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISH--REAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~H--kEaFs~aAknW~~~ 169 (213)
+-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 51 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTM 51 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 345566788999999999999999999999875 99999999999864
No 24
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.31 E-value=7.2e-05 Score=54.77 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=43.0
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
+.|.+-.|-+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 16 kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 62 (93)
T 1cg7_A 16 KDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKAL 62 (93)
T ss_dssp CCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 45666778899999999999999999999999999999999999965
No 25
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00031 Score=56.03 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=42.8
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
+-|.+-.|-+|||..|+++...+|++++|+++..|.-+.++..|+..
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~l 143 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 143 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHS
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 35666678899999999999999999999999999999999999975
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.21 E-value=0.0005 Score=49.25 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=38.6
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 129 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 129 QR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 44 (86)
T 2lef_A 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHAL 44 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 47799999999999999999999999999999999999965
No 27
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00061 Score=49.56 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=38.7
Q ss_pred cCCCchhhhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccC
Q 028144 128 RQRVPSAYNRFIKDEIQRIKAGNPDIS-HREAFSAAAKNWAHF 169 (213)
Q Consensus 128 RQR~psayN~fmK~ei~riK~~~P~i~-HkEaFs~aAknW~~~ 169 (213)
-.|-+|||..|+++.-.+||++||+++ ..|.-+.++..|+..
T Consensus 6 PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~l 48 (81)
T 2d7l_A 6 SGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVL 48 (81)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcC
Confidence 356799999999999999999999998 999999999999864
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.00063 Score=54.21 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=42.9
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhhccCC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPD--ISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~--i~HkEaFs~aAknW~~~P 170 (213)
+-|.+-.|-+|||..|+++....|+++||+ ++-.|..+.++..|+..+
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 60 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCC
Confidence 456666889999999999999999999999 689999999999998753
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.83 E-value=0.00082 Score=56.14 Aligned_cols=46 Identities=30% Similarity=0.532 Sum_probs=41.4
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 028144 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 125 PEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 170 (213)
|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 52 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccC
Confidence 4455678999999999999999999999999999999999998753
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.78 E-value=0.0009 Score=56.72 Aligned_cols=47 Identities=28% Similarity=0.437 Sum_probs=42.9
Q ss_pred CCCcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 123 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 123 KPPEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
+-|.+-.|-+|||..|+++....||++||+++..|..+.++..|+..
T Consensus 37 ~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~L 83 (238)
T 3tmm_A 37 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWREL 83 (238)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Confidence 34667778999999999999999999999999999999999999875
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.61 E-value=0.0025 Score=49.89 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=41.8
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 028144 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 125 PEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 170 (213)
|++..|-++||-.|++++-.+|++++|+++..|.-+.++..|+..+
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls 47 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 5566788999999999999999999999999999999999998653
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.34 E-value=0.003 Score=43.10 Aligned_cols=38 Identities=29% Similarity=0.647 Sum_probs=34.0
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 028144 129 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 129 QR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 170 (213)
.|-+|||..|+++.-..+|..+| .|..+.++..|+..+
T Consensus 4 KrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 4 KRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 57789999999999999999987 599999999999753
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=96.21 E-value=0.0058 Score=46.20 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=37.4
Q ss_pred cCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 128 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 128 RQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
..|-+|||+.|+.+.+.++++++|+ ...|.-+.+...|+..
T Consensus 5 PKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~l 45 (91)
T 1l8y_A 5 PESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNM 45 (91)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 3467999999999999999999999 9999999999999874
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.33 E-value=0.025 Score=42.17 Aligned_cols=38 Identities=11% Similarity=0.330 Sum_probs=31.3
Q ss_pred CCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 130 RVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 130 R~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
|-+|||..|+++.++ +..+++++..|.-+.++..|+..
T Consensus 11 rP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~l 48 (101)
T 1v63_A 11 PPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRI 48 (101)
T ss_dssp CCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999964 44455678899999999999975
No 35
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.21 E-value=0.021 Score=43.09 Aligned_cols=42 Identities=14% Similarity=0.440 Sum_probs=36.2
Q ss_pred Cccc-CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 028144 125 PEKR-QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 125 PEKR-QR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 170 (213)
|.+- .|-+|||..|+++.-++|| +++..|.-+.++..|+..+
T Consensus 14 ~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls 56 (108)
T 1v64_A 14 DGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLS 56 (108)
T ss_dssp TTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCC
Confidence 3343 5679999999999999998 8999999999999999753
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=94.38 E-value=0.011 Score=49.98 Aligned_cols=42 Identities=29% Similarity=0.574 Sum_probs=36.6
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 028144 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 125 PEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 170 (213)
|.+-.|-+|||+.|+++...+||.++|+ |..+.++..|+..+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 4555788999999999999999998886 89999999999753
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=94.37 E-value=0.012 Score=49.14 Aligned_cols=42 Identities=29% Similarity=0.574 Sum_probs=36.5
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 028144 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 170 (213)
Q Consensus 125 PEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 170 (213)
|.+-.|-+|||..|+++...+||.++|+ |..+.++..|+..+
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 4455678999999999999999998886 89999999999753
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.82 E-value=0.0085 Score=44.99 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=34.7
Q ss_pred CcccCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 125 PEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 125 PEKRQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
|-+-.|.||||-.|+.++-.+||++||+++ +.|..+|+.|+..
T Consensus 20 pnaPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~l 62 (90)
T 2yuk_A 20 EALGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKA 62 (90)
T ss_dssp HHHGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHS
T ss_pred CCCCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcC
Confidence 334478899999999999999999999985 3355566999864
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.07 E-value=0.11 Score=38.91 Aligned_cols=39 Identities=18% Similarity=0.430 Sum_probs=33.7
Q ss_pred CCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHH---HHhhccC
Q 028144 129 QRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAA---AKNWAHF 169 (213)
Q Consensus 129 QR~psayN~fmK~ei~riK~~~P~i~HkEaFs~a---AknW~~~ 169 (213)
.|-+|||..|+++.-.+||.+ +++-.|.=+.. ...|+..
T Consensus 12 KRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 12 KASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 578999999999999999998 78888877777 9999864
No 40
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.35 E-value=2.5 Score=27.89 Aligned_cols=41 Identities=37% Similarity=0.571 Sum_probs=24.4
Q ss_pred CCCCCCcccCCCCCCCCceeEEeCCCcceeEEecccCCCCcceeeeecCCc
Q 028144 1 MSSSSTTLSLDQFPTSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHC 51 (213)
Q Consensus 1 ~~~~~~~~~~d~~~~~E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHC 51 (213)
|||++..|..+... .+--=...|..|...+. +.|+..|||-
T Consensus 1 ~Ss~~~~~~~~~~~-~~~~~~~~C~IC~~~~~---------~~~~~~CgH~ 41 (73)
T 2ysl_A 1 GSSGSSGMASGQFV-NKLQEEVICPICLDILQ---------KPVTIDCGHN 41 (73)
T ss_dssp CCCCCCCCCCCCCC-CCCCCCCBCTTTCSBCS---------SEEECTTCCE
T ss_pred CCCcccccccHHHH-HhCccCCEeccCCcccC---------CeEEcCCCCh
Confidence 57777777665442 11112356888876543 4666789993
No 41
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.77 E-value=3.5 Score=26.64 Aligned_cols=38 Identities=42% Similarity=0.690 Sum_probs=22.8
Q ss_pred CCCCCCcccCCCCC--CCCceeEEeCCCcceeEEecccCCCCcceeeeecCC
Q 028144 1 MSSSSTTLSLDQFP--TSEQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGH 50 (213)
Q Consensus 1 ~~~~~~~~~~d~~~--~~E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGH 50 (213)
||+++..|....+. ..+ -..|..|..++. +.|+..|||
T Consensus 1 ~s~~~~~~~~~~~~~~~~~---~~~C~IC~~~~~---------~p~~~~CgH 40 (63)
T 2ysj_A 1 GSSGSSGMASGQFVNKLQE---EVICPICLDILQ---------KPVTIDCGH 40 (63)
T ss_dssp CCCSSSSCCCCCCCCCCCC---CCBCTTTCSBCS---------SCEECTTSS
T ss_pred CCccccccchHHHHHhCcc---CCCCCcCCchhC---------CeEEeCCCC
Confidence 67666666654332 122 246888876543 456678998
No 42
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=62.14 E-value=3.5 Score=30.68 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=36.0
Q ss_pred EeCCCcceeEEecccCCCCcceeeeecCCcCCCcccccccCCCC
Q 028144 22 VHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLP 65 (213)
Q Consensus 22 V~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ll~p 65 (213)
-.|-|||..=+|.|=...--.+-++.|+-|.---..++.+|..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ep 67 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEP 67 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCT
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCcc
Confidence 47999999988888888888899999999987666666665444
No 43
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=58.38 E-value=3.1 Score=36.91 Aligned_cols=29 Identities=31% Similarity=0.785 Sum_probs=23.7
Q ss_pred CceeEEeCCCcceeEEecccCCCCcceeeeecCCcCCCc
Q 028144 17 EQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLL 55 (213)
Q Consensus 17 E~lCYV~CnfCnTILaVsVPcssL~~~VTVRCGHCtnLl 55 (213)
+..=|.||++|.|-- ..|-++|-+|.|--
T Consensus 204 ~G~R~l~Cs~C~t~W----------~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 204 TGLRYLSCSLCACEW----------HYVRIKCSHCEESK 232 (309)
T ss_dssp CCEEEEEETTTCCEE----------ECCTTSCSSSCCCS
T ss_pred CCcEEEEeCCCCCEE----------eecCcCCcCCCCCC
Confidence 555599999998864 77889999999863
No 44
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=56.04 E-value=3.5 Score=31.82 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=24.2
Q ss_pred eCCCcceeEEecccCCC-Cc----ceeeeecCCcCCCcc
Q 028144 23 HCNLCDTVLAVSVPCTS-LF----KTVTVRCGHCTNLLP 56 (213)
Q Consensus 23 ~CnfCnTILaVsVPcss-L~----~~VTVRCGHCtnLlS 56 (213)
-|.-|+|+|.=|+=|+- +- ..|.++|+.|.+.--
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMR 105 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 69999999986654431 11 358999999987543
No 45
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=52.71 E-value=3.6 Score=31.96 Aligned_cols=34 Identities=21% Similarity=0.613 Sum_probs=24.1
Q ss_pred eCCCcceeEEecccCCC-C----cceeeeecCCcCCCcc
Q 028144 23 HCNLCDTVLAVSVPCTS-L----FKTVTVRCGHCTNLLP 56 (213)
Q Consensus 23 ~CnfCnTILaVsVPcss-L----~~~VTVRCGHCtnLlS 56 (213)
-|.-|+|+|.=|+=|+- + -..|.++|+.|.+.--
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR 100 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMR 100 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 69999999985554431 1 1358999999987543
No 46
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=29.59 E-value=14 Score=29.90 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=27.5
Q ss_pred eEEeCCCc---ceeEEecccCCCCcceeeeecCCcCCCccccccc
Q 028144 20 CYVHCNLC---DTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRG 61 (213)
Q Consensus 20 CYV~CnfC---nTILaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ 61 (213)
-||.|.-| +|.|.+- + .+...+|.-|....+|.++.
T Consensus 103 ~yVlC~~C~sPdT~L~k~---~---r~~~l~C~ACGa~~~V~~~k 141 (148)
T 2d74_B 103 EYVICPVCGSPDTKIIKR---D---RFHFLKCEACGAETPIQHLL 141 (148)
T ss_dssp HHSSCSSSCCTTCCCCBS---S---SSBCCCCSSSCCCCCCCC--
T ss_pred HEEECCCCCCcCcEEEEe---C---CEEEEEecCCCCCccccchh
Confidence 48999999 5777762 2 56778999999999998775
No 47
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=28.98 E-value=30 Score=28.63 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=29.1
Q ss_pred eEEeCCCc---ceeEEecccCCCCcceeeeecCCcCCCccccccc
Q 028144 20 CYVHCNLC---DTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRG 61 (213)
Q Consensus 20 CYV~CnfC---nTILaVsVPcssL~~~VTVRCGHCtnLlSVNm~~ 61 (213)
-||.|.-| +|.|.+.. -+ .+...+|--|....+|.++.
T Consensus 95 ~YVlC~~C~sPdT~L~k~~-~~---r~~~l~C~ACGa~~~V~~~~ 135 (170)
T 2g2k_A 95 KFVLCPECENPETDLHVNP-KK---QTIGNSCKACGYRGMLDTHH 135 (170)
T ss_dssp HHHSCTTTSSSCEEEEEET-TT---TEEEEEETTTCCCCCSCSSS
T ss_pred HeEECCCCCCCccEEEEec-CC---CEEEEEccccCCcccccccc
Confidence 48999999 58888721 12 45678999999999998863
No 48
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=26.00 E-value=24 Score=27.19 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=20.0
Q ss_pred eCCCcceeEEecccCCC-CcceeeeecCCcCCC
Q 028144 23 HCNLCDTVLAVSVPCTS-LFKTVTVRCGHCTNL 54 (213)
Q Consensus 23 ~CnfCnTILaVsVPcss-L~~~VTVRCGHCtnL 54 (213)
-|+-|+|-=+-.+==.+ =--+|-|||..|.|.
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 58888875432221000 124899999999985
No 49
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.00 E-value=36 Score=24.27 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=10.1
Q ss_pred EeCCCcceeEEe
Q 028144 22 VHCNLCDTVLAV 33 (213)
Q Consensus 22 V~CnfCnTILaV 33 (213)
|.|..|.|+|+=
T Consensus 35 V~C~~Cgt~L~~ 46 (63)
T 3j20_W 35 VRCLICGATLVE 46 (63)
T ss_dssp EECSSSCCEEEE
T ss_pred EEccCcCCEEec
Confidence 789999999873
No 50
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=22.00 E-value=1.2e+02 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.057 Sum_probs=31.1
Q ss_pred cCCCchhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 028144 128 RQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHF 169 (213)
Q Consensus 128 RQR~psayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 169 (213)
++|--.+|=.++-+.|++|| +++-.|.-.+..+|...+
T Consensus 282 g~rNeP~~v~~v~~~iA~l~----g~~~eeva~~t~~Na~~l 319 (325)
T 3ipw_A 282 QRRNEPSNIIDIAIIMSSIK----HISLFEFVNKVYSNSMNM 319 (325)
T ss_dssp TTCCCGGGHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHhh----CcCHHHHHHHHHHHHHHH
Confidence 66777899999999999999 567778777777887765
No 51
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.34 E-value=84 Score=21.53 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 028144 133 SAYNRFIKDEIQRIKAGNPDISHREAFSAA 162 (213)
Q Consensus 133 sayN~fmK~ei~riK~~~P~i~HkEaFs~a 162 (213)
..++.-.+++|.++.+++|+++.+|.....
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l 103 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKL 103 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 344444577888888899999998865544
No 52
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.74 E-value=35 Score=23.28 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHhcCCCCC
Q 028144 133 SAYNRFIKDEIQRIKAGNPDIS 154 (213)
Q Consensus 133 sayN~fmK~ei~riK~~~P~i~ 154 (213)
||-|.|++..|+|+|..|-.+.
T Consensus 2 sarnaylrkkiarlkkdnlqle 23 (52)
T 3he5_B 2 SARNAYLRKKIARLKKDNLQLE 23 (52)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhhhh
Confidence 6789999999999998765443
Done!