BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028145
         (213 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ORW|A Chain A, Thermotoga Maritima Thymidine Kinase 1 Like Enzyme In
           Complex With Tp4a
 pdb|2ORW|B Chain B, Thermotoga Maritima Thymidine Kinase 1 Like Enzyme In
           Complex With Tp4a
 pdb|2QPO|A Chain A, Thermotoga Maritima Thymidine Kinase In The Apo Form
 pdb|2QPO|B Chain B, Thermotoga Maritima Thymidine Kinase In The Apo Form
 pdb|2QPO|C Chain C, Thermotoga Maritima Thymidine Kinase In The Apo Form
 pdb|2QPO|D Chain D, Thermotoga Maritima Thymidine Kinase In The Apo Form
 pdb|2QQ0|A Chain A, Thymidine Kinase From Thermotoga Maritima In Complex With
           Thymidine + Appnhp
 pdb|2QQ0|B Chain B, Thymidine Kinase From Thermotoga Maritima In Complex With
           Thymidine + Appnhp
 pdb|2QQE|A Chain A, Thymidine Kinase From Thermotoga Maritima In Complex With
           Thymidine
 pdb|2QQE|B Chain B, Thymidine Kinase From Thermotoga Maritima In Complex With
           Thymidine
          Length = 184

 Score = 31.6 bits (70), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 151 HEHDLLSEKGNDIAGHT-----ERRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIE 205
           H   ++S  GN +  H      E RK    DT G  + E++ F PS      D  D GI+
Sbjct: 46  HSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDRGID 105

Query: 206 RSCS 209
             C+
Sbjct: 106 VFCA 109


>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
           Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
           Studies And Mechanistic Implications
 pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
           Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
           Studies And Mechanistic Implications
 pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
           Magnesium And Phosphate
 pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
           Magnesium And Phosphate
          Length = 286

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
           Magnesium And Phosphate
 pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
           Magnesium And Phosphate
          Length = 286

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
           Magnesium And Phosphate
 pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
           Magnesium And Phosphate
          Length = 286

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
           Magnesium And Phosphate
 pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
           Magnesium And Phosphate
          Length = 286

 Score = 27.7 bits (60), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
           Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
           Studies And Mechanistic Implications
 pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
           Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
           Studies And Mechanistic Implications
          Length = 287

 Score = 27.7 bits (60), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 249 PDTPTYSK---AASDAIPPASLKADAPIDKSID 278


>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
 pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
 pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
           Cerevisiae Inorganic Pyrophosphatase
 pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
           Cerevisiae Inorganic Pyrophosphatase
 pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
           Phosphate
 pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
           Phosphate
 pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
 pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
          Length = 286

 Score = 27.7 bits (60), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
           Magnesium And Phosphate
 pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
           Magnesium And Phosphate
          Length = 286

 Score = 27.7 bits (60), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
           Magnesium And Phosphate
 pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
           Magnesium And Phosphate
          Length = 286

 Score = 27.7 bits (60), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
           Its K61r Mutant
 pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
           Its K61r Mutant
          Length = 281

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
           Magnesium And Phosphate
 pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
           Magnesium And Phosphate
          Length = 286

 Score = 27.7 bits (60), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
           Its K61r Mutant
 pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
           Its K61r Mutant
          Length = 281

 Score = 27.7 bits (60), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)

Query: 85  PDSPSHLKVGPAQNQDVSPASLGLDKRLDRSID 117
           PD+P++ K   A +  + PASL  D  +D+SID
Sbjct: 248 PDTPTYSK---AASDAIPPASLKADAPIDKSID 277


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,110,727
Number of Sequences: 62578
Number of extensions: 164363
Number of successful extensions: 160
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 12
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)