BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028145
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZ69|SAP7_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein
7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1
Length = 175
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 102 SPASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPVQ 146
SP+++ L + RS+ E+D V K ++K+SLK PS S P Q
Sbjct: 28 SPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPGQ 72
>sp|Q46L21|MURQ_PROMT N-acetylmuramic acid 6-phosphate etherase OS=Prochlorococcus
marinus (strain NATL2A) GN=murQ PE=3 SV=1
Length = 310
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 49 DQEPDPDPDLQLAS-----AAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSP 103
D D D D++L + A RL G A+ + S + +K+G +
Sbjct: 180 DSTLDNDIDIRLITGPEILAGSTRLKAGTATKMALNIIS----TSVMIKLGKVYGNRMID 235
Query: 104 ASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPV------QNVIEHEHDLLS 157
S+ DK LDR+I + D G+V K++ LKK + S + + +VI+ + L
Sbjct: 236 LSVSNDKLLDRAIGILFDIGSVDKVTAVQLLKKTNGSVKLSLLIALSGMDVIDAKQLLND 295
Query: 158 EKGN 161
KGN
Sbjct: 296 SKGN 299
>sp|Q9WYN2|KITH_THEMA Thymidine kinase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=tdk PE=1 SV=1
Length = 184
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 151 HEHDLLSEKGNDIAGHT-----ERRKVQWTDTCGSELAEIREFEPSEMGGSDDEFDNGIE 205
H ++S GN + H E RK DT G + E++ F PS D D GI+
Sbjct: 46 HSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDRGID 105
Query: 206 RSCS 209
C+
Sbjct: 106 VFCA 109
>sp|Q83KP2|ARAG_SHIFL Arabinose import ATP-binding protein AraG OS=Shigella flexneri
GN=araG PE=3 SV=4
Length = 504
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLAIGQWQMVE 153
>sp|A1TH50|MAK_MYCVP Maltokinase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=mak PE=3 SV=1
Length = 441
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 37 MRVSPWNQYQ-LVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSP 88
+R + YQ LV+ P+ D D +LA A+N + R A+F C G A+ D P
Sbjct: 348 LRSFEYAAYQKLVELAPEQDADGRLADRARNWVDRNSAAF-CAGYAAVAGDDP 399
>sp|Q32HC7|ARAG_SHIDS Arabinose import ATP-binding protein AraG OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|Q3Z2S7|ARAG_SHISS Arabinose import ATP-binding protein AraG OS=Shigella sonnei
(strain Ss046) GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|P0AAF3|ARAG_ECOLI Arabinose import ATP-binding protein AraG OS=Escherichia coli
(strain K12) GN=araG PE=1 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|P0AAF4|ARAG_ECOL6 Arabinose import ATP-binding protein AraG OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|P0AAF5|ARAG_ECO57 Arabinose import ATP-binding protein AraG OS=Escherichia coli
O157:H7 GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|Q322L1|ARAG_SHIBS Arabinose import ATP-binding protein AraG OS=Shigella boydii
serotype 4 (strain Sb227) GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|A3Q7Y6|MAK_MYCSJ Maltokinase OS=Mycobacterium sp. (strain JLS) GN=mak PE=3 SV=1
Length = 444
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 27 LGQKNDDDKPMR-------VSPWNQYQ-LVDQEPDPDPDLQLASAAKNRLSRGCASFVCF 78
L ++ D PMR + YQ L+++ D D QLA+ A+ ++R +SF C
Sbjct: 333 LDERRRPDSPMRDVAGMLRSYEYAAYQRLIERGGDAQHDKQLAARAREWVNRNVSSF-CD 391
Query: 79 GRASA-GPDSPSHLKVGPAQNQDVSPASLGLDKR 111
G A+A G D H ++ A D + +G + R
Sbjct: 392 GYAAASGTDPRDHAELLAAYELDKAVYEVGYEAR 425
>sp|Q1B1L0|MAK_MYCSS Maltokinase OS=Mycobacterium sp. (strain MCS) GN=mak PE=3 SV=1
Length = 444
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 27 LGQKNDDDKPMR-------VSPWNQYQ-LVDQEPDPDPDLQLASAAKNRLSRGCASFVCF 78
L ++ D PMR + YQ L+++ D D QLA+ A+ ++R +SF C
Sbjct: 333 LDERRRPDSPMRDVAGMLRSYEYAAYQRLIERGGDAQHDKQLAARAREWVNRNVSSF-CD 391
Query: 79 GRASA-GPDSPSHLKVGPAQNQDVSPASLGLDKR 111
G A+A G D H ++ A D + +G + R
Sbjct: 392 GYAAASGTDPRDHAELLAAYELDKAVYEVGYEAR 425
>sp|A1UNJ0|MAK_MYCSK Maltokinase OS=Mycobacterium sp. (strain KMS) GN=mak PE=3 SV=1
Length = 444
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 27 LGQKNDDDKPMR-------VSPWNQYQ-LVDQEPDPDPDLQLASAAKNRLSRGCASFVCF 78
L ++ D PMR + YQ L+++ D D QLA+ A+ ++R +SF C
Sbjct: 333 LDERRRPDSPMRDVAGMLRSYEYAAYQRLIERGGDAQHDKQLAARAREWVNRNVSSF-CD 391
Query: 79 GRASA-GPDSPSHLKVGPAQNQDVSPASLGLDKR 111
G A+A G D H ++ A D + +G + R
Sbjct: 392 GYAAASGTDPRDHAELLAAYELDKAVYEVGYEAR 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,914,906
Number of Sequences: 539616
Number of extensions: 3657561
Number of successful extensions: 6286
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6270
Number of HSP's gapped (non-prelim): 39
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)