Query 028145
Match_columns 213
No_of_seqs 53 out of 55
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 06:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03121 nucleic acid binding 59.4 3 6.6E-05 37.7 -0.0 26 21-47 58-83 (243)
2 PF10625 UspB: Universal stres 55.2 4.6 0.0001 32.9 0.4 9 5-13 44-52 (107)
3 PRK04960 universal stress prot 48.7 7.4 0.00016 31.9 0.6 10 4-13 43-52 (111)
4 KOG4745 Metalloproteinase inhi 34.1 28 0.0006 29.6 1.8 51 11-62 18-77 (141)
5 KOG2712 Transcriptional coacti 25.9 42 0.0009 27.5 1.5 27 163-189 42-68 (108)
6 cd03576 NTR_PCOLCE NTR domain, 25.6 58 0.0012 26.5 2.3 27 19-47 80-106 (124)
7 KOG4849 mRNA cleavage factor I 25.2 19 0.00042 35.2 -0.6 28 10-37 114-141 (498)
8 PF07491 PPI_Ypi1: Protein pho 24.5 66 0.0014 23.8 2.2 20 166-185 13-38 (60)
9 cd03579 NTR_netrin-1_like NTR 21.4 76 0.0017 24.4 2.1 13 20-32 65-77 (115)
10 PF01734 Patatin: Patatin-like 20.6 41 0.00088 24.7 0.5 20 3-22 1-20 (204)
No 1
>PLN03121 nucleic acid binding protein; Provisional
Probab=59.44 E-value=3 Score=37.69 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.2
Q ss_pred cceeEeeccCCCCCCCeeeccCcceee
Q 028145 21 GLTLLFLGQKNDDDKPMRVSPWNQYQL 47 (213)
Q Consensus 21 GL~LLllG~k~e~~kp~rv~pWNqy~l 47 (213)
-.||||-|+.-. ++||.|.||.+|++
T Consensus 58 etAllLnGa~l~-d~~I~It~~~~y~~ 83 (243)
T PLN03121 58 ETAVLLSGATIV-DQRVCITRWGQYED 83 (243)
T ss_pred HHHHhcCCCeeC-CceEEEEeCccccc
Confidence 457889999998 99999999999997
No 2
>PF10625 UspB: Universal stress protein B (UspB); InterPro: IPR019598 Universal stress protein B (UspB) in Escherichia coli is a 14kDa protein which is predicted to be an integral membrane protein. Over expression of UspB results in cell death in stationary phase, and mutants of UspB are sensitive to ethanol exposure during stationary phase [].
Probab=55.23 E-value=4.6 Score=32.87 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=8.1
Q ss_pred EeeCceeec
Q 028145 5 VEGGGFFSS 13 (213)
Q Consensus 5 vEgGGfFSs 13 (213)
|.|||||++
T Consensus 44 VDG~GFFtt 52 (107)
T PF10625_consen 44 VDGNGFFTT 52 (107)
T ss_pred ccCCCceec
Confidence 899999986
No 3
>PRK04960 universal stress protein UspB; Provisional
Probab=48.69 E-value=7.4 Score=31.90 Aligned_cols=10 Identities=70% Similarity=1.378 Sum_probs=8.6
Q ss_pred eEeeCceeec
Q 028145 4 AVEGGGFFSS 13 (213)
Q Consensus 4 avEgGGfFSs 13 (213)
-|.|+|||++
T Consensus 43 ~VDG~GFFtt 52 (111)
T PRK04960 43 YVDGGGFFTS 52 (111)
T ss_pred eecCCceeec
Confidence 3899999986
No 4
>KOG4745 consensus Metalloproteinase inhibitor TIMP and related proteins [General function prediction only]
Probab=34.07 E-value=28 Score=29.63 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=37.3
Q ss_pred eeccCccccccce----eEeeccCCCCCCCee-----eccCcceeeeccCCCCCCccccch
Q 028145 11 FSSSASGYSKGLT----LLFLGQKNDDDKPMR-----VSPWNQYQLVDQEPDPDPDLQLAS 62 (213)
Q Consensus 11 FSsSAsGYs~GL~----LLllG~k~e~~kp~r-----v~pWNqy~lV~~e~d~~~~~qlas 62 (213)
+++||=|+.+-+- +||-||-..|+|=.- |.||++-+|.-+|.= .+-++++-
T Consensus 18 ~~es~CG~~l~~~~~keYLlaGrv~~dg~l~itlC~~v~pwd~ls~~qre~~-~~~y~~~c 77 (141)
T KOG4745|consen 18 ADESACGLKLDVGGKKEYLLAGRVEGDGKLLITLCDFVVPWDRLSLTQREGL-NHWYHVGC 77 (141)
T ss_pred ccccccceeeecCCcEEEEEeeeecCCCcEEEEeeceEeechhcchHHhccc-cceeeecc
Confidence 4678888876544 888898887566555 689999999877765 35555554
No 5
>KOG2712 consensus Transcriptional coactivator [Transcription]
Probab=25.86 E-value=42 Score=27.47 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.2
Q ss_pred ccCcccccceeeeccCCCCceEeEeec
Q 028145 163 IAGHTERRKVQWTDTCGSELAEIREFE 189 (213)
Q Consensus 163 ~~~~~~krkVqW~D~~G~~L~eV~EFe 189 (213)
+=....+|.|.=.+..|+.++.||||-
T Consensus 42 i~~l~~~RrVtV~eFkGk~~VdIREyY 68 (108)
T KOG2712|consen 42 IFNLGKNRRVTVREFKGKILVDIREYY 68 (108)
T ss_pred eeecCCceEEehhhcCCceEEehhHhh
Confidence 334567899999999999999999995
No 6
>cd03576 NTR_PCOLCE NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.
Probab=25.60 E-value=58 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.669 Sum_probs=17.9
Q ss_pred cccceeEeeccCCCCCCCeeeccCcceee
Q 028145 19 SKGLTLLFLGQKNDDDKPMRVSPWNQYQL 47 (213)
Q Consensus 19 s~GL~LLllG~k~e~~kp~rv~pWNqy~l 47 (213)
..|..+||+||-+++.++ .+.| ++|-+
T Consensus 80 r~g~~YliMG~v~~~gr~-~i~p-~SfV~ 106 (124)
T cd03576 80 RRGLNYILMGQVDEEGRG-VIPP-ESFVM 106 (124)
T ss_pred ccCCEEEEEeecCCCCCc-ccCC-ccEEE
Confidence 468999999996664445 4444 55543
No 7
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=25.15 E-value=19 Score=35.22 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=22.1
Q ss_pred eeeccCccccccceeEeeccCCCCCCCe
Q 028145 10 FFSSSASGYSKGLTLLFLGQKNDDDKPM 37 (213)
Q Consensus 10 fFSsSAsGYs~GL~LLllG~k~e~~kp~ 37 (213)
||--=+.|-|||.|||.||...--.|-|
T Consensus 114 FFENR~NGQSKG~AL~~~~SdAa~Kq~M 141 (498)
T KOG4849|consen 114 FFENRTNGQSKGYALLVLNSDAAVKQTM 141 (498)
T ss_pred hhhcccCCcccceEEEEecchHHHHHHH
Confidence 8888899999999999999755433333
No 8
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=24.46 E-value=66 Score=23.79 Aligned_cols=20 Identities=30% Similarity=0.699 Sum_probs=13.2
Q ss_pred cccccceeeecc------CCCCceEe
Q 028145 166 HTERRKVQWTDT------CGSELAEI 185 (213)
Q Consensus 166 ~~~krkVqW~D~------~G~~L~eV 185 (213)
...+|+|+|... .|+.-.-+
T Consensus 13 ~~~~~~V~W~edvVDNE~mgkkkSK~ 38 (60)
T PF07491_consen 13 PKSRRRVQWSEDVVDNEHMGKKKSKC 38 (60)
T ss_pred cCCCCceeecCCceeccccccccCce
Confidence 457899999643 46665544
No 9
>cd03579 NTR_netrin-1_like NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C. elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural development. These proteins may be chemoattractive to some neurons and chemorepellant for others. In the case of netrin-1, attraction and repulsion responses are mediated by the DCC and UNC-5 receptor families. The biological activities of C. elegans UNC-6, which may either attract or repel migrating cells or axons, are mediated by its different domains. The C-terminal NTR domain of UNC-6 has been shown to inhibit axon branching activity.
Probab=21.37 E-value=76 Score=24.39 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=11.3
Q ss_pred ccceeEeeccCCC
Q 028145 20 KGLTLLFLGQKND 32 (213)
Q Consensus 20 ~GL~LLllG~k~e 32 (213)
.|-.+|++|+.++
T Consensus 65 ~g~~YLImG~~~~ 77 (115)
T cd03579 65 VGKSYLLLGKDED 77 (115)
T ss_pred CCCEEEEEeccCC
Confidence 5889999999876
No 10
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=20.57 E-value=41 Score=24.70 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=15.1
Q ss_pred eeEeeCceeeccCccccccc
Q 028145 3 LAVEGGGFFSSSASGYSKGL 22 (213)
Q Consensus 3 lavEgGGfFSsSAsGYs~GL 22 (213)
|+..|||....-..|+-+.|
T Consensus 1 LvlsGGG~rg~~~~G~l~~L 20 (204)
T PF01734_consen 1 LVLSGGGSRGAYQAGVLKAL 20 (204)
T ss_dssp EEE---CCGCCCCHHHHHHH
T ss_pred CEEcCcHHHHHHHHHHHHHH
Confidence 68899999999999999887
Done!