Query 028145
Match_columns 213
No_of_seqs 53 out of 55
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 11:04:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pcf_A P15, transcriptional co 24.5 30 0.001 24.5 1.4 22 168-189 7-28 (66)
2 3iag_C Recombining binding pro 21.5 61 0.0021 30.4 3.3 11 3-13 177-187 (422)
3 4dx8_H KREV interaction trappe 16.9 35 0.0012 29.3 0.5 15 64-78 126-140 (203)
4 1pk8_A RAT synapsin I; ATP bin 16.8 29 0.00099 32.0 0.0 8 6-13 73-80 (422)
5 4agh_A Mosub1, transcription c 15.0 60 0.0021 26.5 1.4 24 166-189 51-74 (158)
6 2igt_A SAM dependent methyltra 12.1 70 0.0024 27.2 1.1 16 38-53 38-53 (332)
7 2dnl_A Cytoplasmic polyadenyla 9.3 1.6E+02 0.0055 20.4 2.0 12 33-44 89-100 (114)
8 2lv4_A Putative outer membrane 8.9 90 0.0031 25.5 0.6 7 13-19 20-26 (146)
9 3lb9_A Endo-1,4-beta-xylanase; 8.5 1E+02 0.0036 25.8 0.9 11 1-13 45-55 (182)
10 1se9_A Ubiquitin family; ubiqu 8.4 77 0.0026 24.6 0.0 8 206-213 119-126 (126)
No 1
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=24.47 E-value=30 Score=24.54 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.3
Q ss_pred cccceeeeccCCCCceEeEeec
Q 028145 168 ERRKVQWTDTCGSELAEIREFE 189 (213)
Q Consensus 168 ~krkVqW~D~~G~~L~eV~EFe 189 (213)
.+|+|+=....|+.++.||||-
T Consensus 7 ~~rrvtv~~fkG~~~VdIRe~Y 28 (66)
T 1pcf_A 7 KMRYVSVRDFKGKVLIDIREYW 28 (66)
T ss_dssp TTEEEEEEEETTEEEEEEEEEE
T ss_pred CCeEEEEEEeCCCEEEEEEEEE
Confidence 5789999999999999999996
No 2
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=21.53 E-value=61 Score=30.45 Aligned_cols=11 Identities=64% Similarity=1.029 Sum_probs=8.2
Q ss_pred eeEeeCceeec
Q 028145 3 LAVEGGGFFSS 13 (213)
Q Consensus 3 lavEgGGfFSs 13 (213)
|-||||+|..|
T Consensus 177 L~ve~g~f~as 187 (422)
T 3iag_C 177 LHVEGGNFHAS 187 (422)
T ss_dssp EEEETTEEEEE
T ss_pred EEeeCCceEee
Confidence 67899887743
No 3
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=16.93 E-value=35 Score=29.26 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=6.9
Q ss_pred hhcccCCCCcceeee
Q 028145 64 AKNRLSRGCASFVCF 78 (213)
Q Consensus 64 ~kn~~s~gCASFVCF 78 (213)
+|.-.+.||++|.||
T Consensus 126 tk~~~~pg~Psfycl 140 (203)
T 4dx8_H 126 TKYTYTPGCPIFYCL 140 (203)
T ss_dssp --------CCEEEEH
T ss_pred CCCCCCCCCCceeeh
Confidence 577778999999999
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=16.76 E-value=29 Score=31.98 Aligned_cols=8 Identities=88% Similarity=1.556 Sum_probs=0.0
Q ss_pred eeCceeec
Q 028145 6 EGGGFFSS 13 (213)
Q Consensus 6 EgGGfFSs 13 (213)
-|||||||
T Consensus 73 ~~~~~~~s 80 (422)
T 1pk8_A 73 GGGGFFSS 80 (422)
T ss_dssp --------
T ss_pred CCcchhhH
Confidence 37899997
No 5
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=14.98 E-value=60 Score=26.55 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.7
Q ss_pred cccccceeeeccCCCCceEeEeec
Q 028145 166 HTERRKVQWTDTCGSELAEIREFE 189 (213)
Q Consensus 166 ~~~krkVqW~D~~G~~L~eV~EFe 189 (213)
...+|+|.=....|+.|+.||||-
T Consensus 51 Ls~~rrvtV~~fkG~~~vdIREyY 74 (158)
T 4agh_A 51 ISDKRRVGISQFKKMDFINIREYY 74 (158)
T ss_dssp SSSSEEEEEEEETTEEEEEEEEEE
T ss_pred cCCCcEEEEEeeCCCEEEEeEeEE
Confidence 346899999999999999999997
No 6
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=12.08 E-value=70 Score=27.19 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=12.9
Q ss_pred eeccCcceeeeccCCC
Q 028145 38 RVSPWNQYQLVDQEPD 53 (213)
Q Consensus 38 rv~pWNqy~lV~~e~d 53 (213)
...+||-|+||+.|+.
T Consensus 38 ~~~~~~~yrl~~~~pG 53 (332)
T 2igt_A 38 ESSGAGDFHLIDSGNG 53 (332)
T ss_dssp EECCCTTEEEEEEETT
T ss_pred ecCCCCeEEEEcCCCC
Confidence 4478999999997743
No 7
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.32 E-value=1.6e+02 Score=20.43 Aligned_cols=12 Identities=50% Similarity=1.276 Sum_probs=10.1
Q ss_pred CCCCeeeccCcc
Q 028145 33 DDKPMRVSPWNQ 44 (213)
Q Consensus 33 ~~kp~rv~pWNq 44 (213)
.+|++.|.||..
T Consensus 89 ~~~~~~v~p~~~ 100 (114)
T 2dnl_A 89 KDKPVQIRPWNL 100 (114)
T ss_dssp CSEEEEEECCCC
T ss_pred CCCeeeccCCcc
Confidence 388999999985
No 8
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=8.87 E-value=90 Score=25.54 Aligned_cols=7 Identities=71% Similarity=1.132 Sum_probs=5.2
Q ss_pred ccCcccc
Q 028145 13 SSASGYS 19 (213)
Q Consensus 13 sSAsGYs 19 (213)
+|||||+
T Consensus 20 aSAsGYt 26 (146)
T 2lv4_A 20 ASASGYT 26 (146)
T ss_dssp CCCCCCC
T ss_pred cccCCCc
Confidence 5788886
No 9
>3lb9_A Endo-1,4-beta-xylanase; BCX, permutation, glycosidase, xylan degradation, hydrolase; 3.00A {Bacillus circulans}
Probab=8.49 E-value=1e+02 Score=25.84 Aligned_cols=11 Identities=45% Similarity=0.700 Sum_probs=7.9
Q ss_pred CeeeEeeCceeec
Q 028145 1 MLLAVEGGGFFSS 13 (213)
Q Consensus 1 MLlavEgGGfFSs 13 (213)
|+||+|| |+||
T Consensus 45 qi~atEG--y~ss 55 (182)
T 3lb9_A 45 QVMATEG--YQSS 55 (182)
T ss_dssp EEEEEEE--EEEE
T ss_pred EEEEEEe--Eccc
Confidence 5789995 6654
No 10
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=8.35 E-value=77 Score=24.61 Aligned_cols=8 Identities=38% Similarity=1.302 Sum_probs=0.0
Q ss_pred CceEEEeC
Q 028145 206 RSCSCTIM 213 (213)
Q Consensus 206 ~sC~CvI~ 213 (213)
..|.|+||
T Consensus 119 ~~C~C~Il 126 (126)
T 1se9_A 119 NKCVCSVM 126 (126)
T ss_dssp --------
T ss_pred CCceEEeC
Confidence 56999997
Done!