Query 028145
Match_columns 213
No_of_seqs 53 out of 55
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 11:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028145.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028145hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zbsa2 c.55.1.5 (A:1-107) Hyp 41.4 4.7 0.00034 27.5 1.4 36 1-47 1-36 (107)
2 d1pcfa_ d.18.1.1 (A:) Transcri 27.6 11 0.00082 25.1 1.4 22 168-189 7-28 (66)
3 d2j0td1 b.40.3.1 (D:1-124) TIM 18.3 17 0.0012 25.3 0.9 31 13-44 67-107 (124)
4 d2oola2 d.110.3.9 (A:26-139) S 15.3 29 0.0021 22.8 1.5 17 178-194 98-114 (114)
5 d3brda3 b.42.7.1 (A:381-541) D 14.8 29 0.0021 26.9 1.4 13 3-15 28-40 (161)
6 d2veaa3 d.110.3.9 (A:4-130) Ph 12.2 41 0.003 23.6 1.5 13 183-195 114-126 (127)
7 d2o9ca2 d.110.3.9 (A:4-130) Ba 10.8 33 0.0024 24.0 0.7 15 178-192 113-127 (127)
8 d2igta1 c.66.1.51 (A:1-309) Pu 8.5 49 0.0035 26.8 0.8 14 37-50 16-29 (309)
9 d1oq1a_ b.29.1.17 (A:) Hypothe 7.9 97 0.007 21.7 2.2 18 34-51 152-169 (223)
10 d3c2wa3 d.110.3.9 (A:5-117) Ba 7.2 75 0.0054 21.5 1.3 12 182-193 100-111 (113)
No 1
>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}
Probab=41.44 E-value=4.7 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=20.9
Q ss_pred CeeeEeeCceeeccCccccccceeEeeccCCCCCCCeeeccCcceee
Q 028145 1 MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQL 47 (213)
Q Consensus 1 MLlavEgGGfFSsSAsGYs~GL~LLllG~k~e~~kp~rv~pWNqy~l 47 (213)
|.|.|+||| +|-.+.|.- ..+--.=.+.-|-|-|.+
T Consensus 1 MilivDgGg---------TKT~~vl~d--~g~~i~~~~t~g~Np~~~ 36 (107)
T d1zbsa2 1 MILIGDSGS---------TKTDWCIAK--EGKSLGRFQTSGINPFQQ 36 (107)
T ss_dssp CEEEEEECS---------SEEEEEEEE--TTEEEEEEEEECCCTTTS
T ss_pred CEEEEEecc---------ccEEEEEEC--CCCeEEEEecCCcCcccC
Confidence 999999998 676665432 111011133467776644
No 2
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.59 E-value=11 Score=25.07 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.5
Q ss_pred cccceeeeccCCCCceEeEeec
Q 028145 168 ERRKVQWTDTCGSELAEIREFE 189 (213)
Q Consensus 168 ~krkVqW~D~~G~~L~eV~EFe 189 (213)
.+|+|+=.+..|+.+..||||-
T Consensus 7 ~~rrvtV~~FkG~~~vdIReyY 28 (66)
T d1pcfa_ 7 KMRYVSVRDFKGKVLIDIREYW 28 (66)
T ss_dssp TTEEEEEEEETTEEEEEEEEEE
T ss_pred CcEEEEEEEECCcEEEEEEEEE
Confidence 5789999999999999999997
No 3
>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.25 E-value=17 Score=25.25 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=22.7
Q ss_pred ccCcccc-----ccceeEeeccCCCCCCCee-----eccCcc
Q 028145 13 SSASGYS-----KGLTLLFLGQKNDDDKPMR-----VSPWNQ 44 (213)
Q Consensus 13 sSAsGYs-----~GL~LLllG~k~e~~kp~r-----v~pWNq 44 (213)
+++=|+. .|-.+|++|+..+ .+.+- |.||+.
T Consensus 67 ~~~CG~~~~~l~~g~~YLI~G~~~~-g~l~v~~cs~v~~W~~ 107 (124)
T d2j0td1 67 ESVCGYFHRSHNRSEEFLIAGKLQD-GLLHITTCSFVAPWNS 107 (124)
T ss_dssp GGGTCCCCCCSCSSCEEEEEEEEET-TEEECCTTSEEEEGGG
T ss_pred cCccCccCcccCCCCeEEEEEEecC-CcEEEecCceEEEhHH
Confidence 4445775 4899999998765 66664 678875
No 4
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=15.31 E-value=29 Score=22.83 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=11.9
Q ss_pred CCCCceEeEeeccCCCC
Q 028145 178 CGSELAEIREFEPSEMG 194 (213)
Q Consensus 178 ~G~~L~eV~EFeps~~~ 194 (213)
|=.+=.-|.||||.+++
T Consensus 98 H~~~~~lilElEp~~~~ 114 (114)
T d2oola2 98 HRHDSIVILELEPRDES 114 (114)
T ss_dssp EEETTEEEEEEECCCCC
T ss_pred EEeCCEEEEEEecCCCC
Confidence 33344679999998763
No 5
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=14.84 E-value=29 Score=26.91 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=10.1
Q ss_pred eeEeeCceeeccC
Q 028145 3 LAVEGGGFFSSSA 15 (213)
Q Consensus 3 lavEgGGfFSsSA 15 (213)
|.||||+|..++.
T Consensus 28 l~ve~~~f~as~~ 40 (161)
T d3brda3 28 LHVEGNAFHASST 40 (161)
T ss_dssp EEEETTEEEEESS
T ss_pred EEecCCeeEEeec
Confidence 6799999986553
No 6
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=12.17 E-value=41 Score=23.58 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.2
Q ss_pred eEeEeeccCCCCC
Q 028145 183 AEIREFEPSEMGG 195 (213)
Q Consensus 183 ~eV~EFeps~~~d 195 (213)
.=|+||||....+
T Consensus 114 ~lIlElEP~~~~~ 126 (127)
T d2veaa3 114 LLVCELEPAYTSD 126 (127)
T ss_dssp CEEEEEEECCTTS
T ss_pred eEEEEeecCCCCC
Confidence 4578999998764
No 7
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=10.84 E-value=33 Score=23.99 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=10.3
Q ss_pred CCCCceEeEeeccCC
Q 028145 178 CGSELAEIREFEPSE 192 (213)
Q Consensus 178 ~G~~L~eV~EFeps~ 192 (213)
|-.+=.=|.||||+|
T Consensus 113 Hrs~~~lilElEP~e 127 (127)
T d2o9ca2 113 HRVGELLILEFEPTE 127 (127)
T ss_dssp EEETTEEEEEEEEEC
T ss_pred EEECCEEEEEEecCC
Confidence 333445789999975
No 8
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.46 E-value=49 Score=26.84 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=11.8
Q ss_pred eeeccCcceeeecc
Q 028145 37 MRVSPWNQYQLVDQ 50 (213)
Q Consensus 37 ~rv~pWNqy~lV~~ 50 (213)
|...+|.-|+|+|-
T Consensus 16 l~~~~w~dY~Lid~ 29 (309)
T d2igta1 16 LESSGAGDFHLIDS 29 (309)
T ss_dssp EEECCCTTEEEEEE
T ss_pred eccCCCCCeEEEEC
Confidence 56688999999984
No 9
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]}
Probab=7.86 E-value=97 Score=21.65 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=13.1
Q ss_pred CCCeeeccCcceeeeccC
Q 028145 34 DKPMRVSPWNQYQLVDQE 51 (213)
Q Consensus 34 ~kp~rv~pWNqy~lV~~e 51 (213)
.+.++.--||+|+++-+.
T Consensus 152 ~~~~~~geWn~~~I~v~G 169 (223)
T d1oq1a_ 152 PSPDDADSPYRMKLIKDK 169 (223)
T ss_dssp CCGGGCCSCEEEEEEEET
T ss_pred cccccCCCcEEEEEEEEC
Confidence 455666779999987654
No 10
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.25 E-value=75 Score=21.47 Aligned_cols=12 Identities=25% Similarity=0.033 Sum_probs=9.4
Q ss_pred ceEeEeeccCCC
Q 028145 182 LAEIREFEPSEM 193 (213)
Q Consensus 182 L~eV~EFeps~~ 193 (213)
=.=|.||||...
T Consensus 100 ~~lilElEP~~~ 111 (113)
T d3c2wa3 100 EVFYLEFEIRTA 111 (113)
T ss_dssp TEEEEEEEECCS
T ss_pred CEEEEEEeeCCC
Confidence 356899999876
Done!