Query 028146
Match_columns 213
No_of_seqs 168 out of 1068
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:57:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01975 SurE: Survival protei 100.0 1.7E-67 3.6E-72 446.5 18.4 187 15-208 1-193 (196)
2 PRK13932 stationary phase surv 100.0 1.7E-66 3.6E-71 455.9 21.9 185 12-207 3-189 (257)
3 PRK13933 stationary phase surv 100.0 6.1E-66 1.3E-70 451.7 21.3 184 15-207 1-187 (253)
4 PRK13935 stationary phase surv 100.0 6.4E-66 1.4E-70 451.4 20.5 182 15-207 1-184 (253)
5 TIGR00087 surE 5'/3'-nucleotid 100.0 1E-65 2.2E-70 448.4 21.6 186 15-207 1-190 (244)
6 COG0496 SurE Predicted acid ph 100.0 6.1E-66 1.3E-70 449.9 19.4 183 15-207 1-186 (252)
7 PRK00346 surE 5'(3')-nucleotid 100.0 2.5E-65 5.3E-70 447.3 21.3 183 15-207 1-184 (250)
8 PRK13931 stationary phase surv 100.0 2.2E-65 4.8E-70 450.0 20.9 189 15-207 1-194 (261)
9 PRK13934 stationary phase surv 100.0 6.9E-64 1.5E-68 440.8 20.7 183 15-207 1-190 (266)
10 cd03784 GT1_Gtf_like This fami 92.8 0.2 4.3E-06 45.3 5.3 38 15-53 1-39 (401)
11 PLN02846 digalactosyldiacylgly 92.4 1 2.2E-05 43.2 9.7 41 12-53 2-48 (462)
12 PF04007 DUF354: Protein of un 91.1 0.51 1.1E-05 43.4 5.9 104 15-143 1-110 (335)
13 PF14336 DUF4392: Domain of un 86.6 1.3 2.7E-05 40.0 5.1 33 28-61 63-95 (291)
14 PRK00726 murG undecaprenyldiph 86.4 5.4 0.00012 35.4 9.0 37 15-52 2-39 (357)
15 cd03814 GT1_like_2 This family 84.9 17 0.00038 30.8 11.2 28 27-55 17-44 (364)
16 cd03785 GT1_MurG MurG is an N- 84.2 8.3 0.00018 33.7 9.1 23 29-52 15-37 (350)
17 TIGR01426 MGT glycosyltransfer 83.5 2.5 5.5E-05 38.3 5.6 24 30-54 12-35 (392)
18 TIGR00661 MJ1255 conserved hyp 83.4 6.6 0.00014 34.9 8.1 32 100-145 91-122 (321)
19 PF13439 Glyco_transf_4: Glyco 81.5 3.1 6.7E-05 31.8 4.7 42 17-59 1-46 (177)
20 TIGR01133 murG undecaprenyldip 81.5 11 0.00025 32.8 8.9 36 16-52 2-38 (348)
21 PRK10307 putative glycosyl tra 80.9 2.9 6.2E-05 38.0 5.0 36 15-51 1-41 (412)
22 cd03802 GT1_AviGT4_like This f 78.1 5.1 0.00011 34.3 5.4 40 15-55 1-49 (335)
23 PF07075 DUF1343: Protein of u 77.5 10 0.00023 35.4 7.6 111 18-145 3-120 (365)
24 PRK09864 putative peptidase; P 76.6 8.9 0.00019 35.7 6.9 136 28-170 178-341 (356)
25 TIGR03107 glu_aminopep glutamy 75.2 11 0.00024 34.9 7.1 134 28-169 181-340 (350)
26 cd03820 GT1_amsD_like This fam 67.9 41 0.00088 27.9 8.4 38 16-54 1-42 (348)
27 PRK12446 undecaprenyldiphospho 66.7 36 0.00078 31.0 8.4 36 98-144 87-122 (352)
28 cd03825 GT1_wcfI_like This fam 65.0 7.4 0.00016 33.5 3.4 38 15-53 1-41 (365)
29 PF13579 Glyco_trans_4_4: Glyc 65.0 7.3 0.00016 29.1 3.0 25 30-55 7-31 (160)
30 PRK06849 hypothetical protein; 64.7 12 0.00026 34.3 4.9 37 12-52 2-38 (389)
31 PF03033 Glyco_transf_28: Glyc 61.4 8 0.00017 29.4 2.7 23 30-53 15-37 (139)
32 cd03805 GT1_ALG2_like This fam 61.2 11 0.00024 33.3 4.0 37 15-52 1-40 (392)
33 COG0726 CDA1 Predicted xylanas 60.4 16 0.00036 30.2 4.6 37 14-50 64-101 (267)
34 PLN02871 UDP-sulfoquinovose:DA 59.9 19 0.00041 33.6 5.4 41 12-53 56-102 (465)
35 TIGR00045 glycerate kinase. Th 58.0 80 0.0017 29.7 9.1 80 91-174 274-368 (375)
36 TIGR01918 various_sel_PB selen 57.9 13 0.00029 35.6 3.9 55 85-143 60-114 (431)
37 TIGR01917 gly_red_sel_B glycin 57.9 13 0.00029 35.6 3.9 54 86-143 61-114 (431)
38 cd04962 GT1_like_5 This family 57.0 60 0.0013 28.2 7.8 33 19-52 7-39 (371)
39 cd03141 GATase1_Hsp31_like Typ 54.3 20 0.00042 30.6 4.1 32 22-54 17-48 (221)
40 COG2065 PyrR Pyrimidine operon 51.4 9.9 0.00022 32.1 1.8 22 118-139 103-126 (179)
41 PF13477 Glyco_trans_4_2: Glyc 50.8 26 0.00056 26.4 4.0 34 17-54 3-36 (139)
42 COG1817 Uncharacterized protei 49.6 12 0.00025 34.8 2.1 21 122-144 259-279 (346)
43 PRK15415 propanediol utilizati 49.0 18 0.00039 32.6 3.1 55 81-135 185-242 (266)
44 cd06167 LabA_like LabA_like pr 48.6 32 0.00069 26.7 4.2 29 17-51 104-132 (149)
45 PRK09932 glycerate kinase II; 48.4 1.4E+02 0.003 28.3 9.0 41 101-145 283-325 (381)
46 PF07355 GRDB: Glycine/sarcosi 47.9 24 0.00053 32.9 3.9 55 84-142 63-117 (349)
47 PF01205 UPF0029: Uncharacteri 47.8 24 0.00053 27.4 3.4 32 17-49 50-83 (110)
48 cd03817 GT1_UGDG_like This fam 47.6 30 0.00065 29.2 4.2 28 26-54 16-43 (374)
49 PRK10342 glycerate kinase I; P 46.4 1.5E+02 0.0033 27.9 9.0 43 101-145 283-325 (381)
50 TIGR03568 NeuC_NnaA UDP-N-acet 45.4 1.1E+02 0.0024 27.9 7.9 51 85-145 73-126 (365)
51 smart00368 LRR_RI Leucine rich 44.1 25 0.00054 20.3 2.3 26 13-38 2-27 (28)
52 TIGR03449 mycothiol_MshA UDP-N 42.4 39 0.00084 30.3 4.3 24 28-52 24-47 (405)
53 cd03796 GT1_PIG-A_like This fa 39.9 43 0.00094 30.2 4.3 25 27-52 17-41 (398)
54 cd03798 GT1_wlbH_like This fam 39.4 2.2E+02 0.0048 23.6 9.4 29 28-57 18-46 (377)
55 cd03132 GATase1_catalase Type 39.2 1.1E+02 0.0024 23.4 6.0 35 17-54 6-40 (142)
56 PRK11780 isoprenoid biosynthes 39.2 52 0.0011 28.3 4.4 36 17-53 6-44 (217)
57 PF01936 NYN: NYN domain; Int 39.0 30 0.00065 26.4 2.7 35 17-60 100-134 (146)
58 PHA03392 egt ecdysteroid UDP-g 38.6 29 0.00062 33.6 3.0 40 13-53 19-60 (507)
59 PRK11249 katE hydroperoxidase 38.0 1.2E+02 0.0026 31.3 7.3 39 13-52 596-634 (752)
60 cd03791 GT1_Glycogen_synthase_ 37.9 33 0.00072 31.7 3.3 24 30-54 22-45 (476)
61 PF10841 DUF2644: Protein of u 37.9 12 0.00027 26.3 0.3 22 18-39 3-25 (60)
62 cd03794 GT1_wbuB_like This fam 37.8 59 0.0013 27.4 4.6 27 27-54 17-43 (394)
63 PF00381 PTS-HPr: PTS HPr comp 37.7 54 0.0012 23.5 3.7 34 15-49 4-37 (84)
64 smart00775 LNS2 LNS2 domain. T 37.6 38 0.00083 27.4 3.2 18 24-41 26-43 (157)
65 PF01731 Arylesterase: Arylest 36.7 57 0.0012 24.2 3.7 44 5-52 2-45 (86)
66 PF08323 Glyco_transf_5: Starc 36.3 36 0.00079 29.4 3.0 22 30-52 22-43 (245)
67 cd03808 GT1_cap1E_like This fa 36.1 40 0.00086 28.1 3.2 37 18-55 4-40 (359)
68 cd03816 GT1_ALG1_like This fam 35.7 52 0.0011 30.3 4.2 36 14-51 5-40 (415)
69 PRK12767 carbamoyl phosphate s 35.7 60 0.0013 28.5 4.4 34 14-52 1-35 (326)
70 PF13528 Glyco_trans_1_3: Glyc 35.4 45 0.00098 28.9 3.6 32 101-146 93-124 (318)
71 TIGR02884 spore_pdaA delta-lac 35.2 65 0.0014 27.4 4.4 37 11-48 33-69 (224)
72 PF04230 PS_pyruv_trans: Polys 35.0 34 0.00074 27.9 2.6 24 122-145 262-285 (286)
73 PF02595 Gly_kinase: Glycerate 35.0 1.1E+02 0.0024 28.8 6.2 62 80-145 264-325 (377)
74 cd01988 Na_H_Antiporter_C The 34.5 1.8E+02 0.0039 21.1 6.4 95 16-116 1-108 (132)
75 PLN00016 RNA-binding protein; 34.4 59 0.0013 29.5 4.3 38 14-52 52-90 (378)
76 PRK14697 bifunctional 5'-methy 33.4 1.9E+02 0.0042 24.7 7.1 48 127-174 175-227 (233)
77 PRK01911 ppnK inorganic polyph 32.8 1.4E+02 0.0031 26.9 6.4 34 101-145 63-97 (292)
78 COG1926 Predicted phosphoribos 32.5 58 0.0013 28.5 3.6 41 16-57 126-167 (220)
79 cd01482 vWA_collagen_alphaI-XI 32.2 83 0.0018 24.8 4.4 31 16-49 107-137 (164)
80 PRK08334 translation initiatio 31.8 71 0.0015 29.9 4.4 43 101-143 237-279 (356)
81 PRK05772 translation initiatio 31.3 1.9E+02 0.0041 27.1 7.1 93 37-143 195-287 (363)
82 cd01475 vWA_Matrilin VWA_Matri 31.0 78 0.0017 26.6 4.2 31 16-49 112-142 (224)
83 PRK15405 ethanolamine utilizat 31.0 73 0.0016 27.9 4.0 102 28-134 46-201 (217)
84 PRK06714 S-adenosylhomocystein 30.5 2.4E+02 0.0052 24.4 7.3 49 126-174 175-228 (236)
85 PF00156 Pribosyltran: Phospho 29.8 59 0.0013 24.1 2.9 34 12-47 86-120 (125)
86 PF06722 DUF1205: Protein of u 29.8 91 0.002 23.5 3.9 47 12-59 38-91 (97)
87 PF00201 UDPGT: UDP-glucoronos 29.5 22 0.00047 33.3 0.6 35 17-52 3-37 (500)
88 TIGR00182 plsX fatty acid/phos 29.5 4.4E+02 0.0096 24.1 10.6 74 29-109 9-90 (322)
89 cd03148 GATase1_EcHsp31_like T 29.5 89 0.0019 27.0 4.3 30 23-53 21-50 (232)
90 PRK00654 glgA glycogen synthas 29.2 57 0.0012 30.6 3.3 23 30-53 23-45 (466)
91 PRK06843 inosine 5-monophospha 29.1 2E+02 0.0043 27.4 6.9 102 30-143 154-263 (404)
92 cd01476 VWA_integrin_invertebr 29.1 97 0.0021 24.1 4.2 32 16-50 107-139 (163)
93 TIGR01133 murG undecaprenyldip 29.0 65 0.0014 28.0 3.5 22 122-144 257-278 (348)
94 TIGR03590 PseG pseudaminic aci 28.9 77 0.0017 27.8 3.9 19 127-145 251-269 (279)
95 cd05010 SIS_AgaS_like AgaS-lik 28.6 97 0.0021 24.9 4.2 48 3-51 39-88 (151)
96 PRK08535 translation initiatio 28.6 67 0.0014 29.1 3.6 44 102-145 188-231 (310)
97 COG1929 Glycerate kinase [Carb 28.6 77 0.0017 29.9 4.0 43 101-145 283-325 (378)
98 PRK13609 diacylglycerol glucos 28.2 97 0.0021 27.7 4.5 42 12-54 2-45 (380)
99 PRK00025 lpxB lipid-A-disaccha 28.1 67 0.0015 28.6 3.5 19 122-142 268-286 (380)
100 cd03801 GT1_YqgM_like This fam 28.0 89 0.0019 25.8 4.0 29 27-56 17-45 (374)
101 TIGR02095 glgA glycogen/starch 27.8 64 0.0014 30.1 3.4 24 30-54 23-46 (473)
102 PRK07322 adenine phosphoribosy 27.7 1.1E+02 0.0024 25.1 4.5 31 13-45 119-150 (178)
103 PRK09288 purT phosphoribosylgl 27.7 1.4E+02 0.0031 27.0 5.6 47 1-54 1-47 (395)
104 PF01008 IF-2B: Initiation fac 27.6 56 0.0012 28.5 2.8 45 102-146 176-220 (282)
105 PRK04539 ppnK inorganic polyph 26.7 1.8E+02 0.0038 26.3 5.9 34 101-145 67-101 (296)
106 cd03823 GT1_ExpE7_like This fa 26.6 82 0.0018 26.5 3.6 26 30-56 21-46 (359)
107 PRK12342 hypothetical protein; 26.0 1.2E+02 0.0026 26.9 4.6 36 102-144 109-144 (254)
108 PRK06372 translation initiatio 25.9 1.1E+02 0.0024 27.2 4.3 45 102-146 151-195 (253)
109 PRK08335 translation initiatio 25.6 89 0.0019 28.1 3.7 43 102-144 177-219 (275)
110 PRK12827 short chain dehydroge 25.5 1.7E+02 0.0037 23.8 5.3 33 13-50 5-38 (249)
111 PRK12825 fabG 3-ketoacyl-(acyl 25.2 1.3E+02 0.0028 24.4 4.4 35 12-50 4-38 (249)
112 PRK09922 UDP-D-galactose:(gluc 24.9 1E+02 0.0022 27.3 4.1 38 15-53 1-44 (359)
113 PRK05720 mtnA methylthioribose 24.9 1.1E+02 0.0023 28.5 4.2 44 101-144 224-267 (344)
114 cd01458 vWA_ku Ku70/Ku80 N-ter 24.7 1.3E+02 0.0028 25.1 4.4 38 14-52 129-172 (218)
115 PRK08525 amidophosphoribosyltr 24.7 1.1E+02 0.0024 29.2 4.4 37 13-50 339-376 (445)
116 PF11965 DUF3479: Domain of un 24.4 95 0.0021 25.9 3.5 28 119-146 9-37 (164)
117 PRK11568 hypothetical protein; 24.4 96 0.0021 26.7 3.6 29 20-49 69-99 (204)
118 PRK02649 ppnK inorganic polyph 24.3 2.1E+02 0.0045 26.0 5.9 33 102-145 68-101 (305)
119 cd03795 GT1_like_4 This family 24.2 1.6E+02 0.0035 25.0 5.0 39 16-55 1-44 (357)
120 PF11977 RNase_Zc3h12a: Zc3h12 23.7 47 0.001 26.8 1.5 32 21-53 18-49 (155)
121 PRK05584 5'-methylthioadenosin 23.4 4.3E+02 0.0093 22.0 7.4 47 126-172 176-227 (230)
122 PRK03359 putative electron tra 23.2 1.1E+02 0.0023 27.2 3.7 37 102-145 112-148 (256)
123 TIGR02764 spore_ybaN_pdaB poly 23.2 1.1E+02 0.0025 24.8 3.7 30 13-42 4-33 (191)
124 COG4567 Response regulator con 23.0 1.2E+02 0.0027 25.6 3.8 31 15-49 10-40 (182)
125 PRK06371 translation initiatio 22.9 1.3E+02 0.0028 27.8 4.4 43 101-143 214-256 (329)
126 PRK14077 pnk inorganic polypho 22.8 2.6E+02 0.0057 25.1 6.2 34 101-145 63-97 (287)
127 PF04007 DUF354: Protein of un 22.4 65 0.0014 29.6 2.3 19 123-143 256-274 (335)
128 TIGR00824 EIIA-man PTS system, 22.3 94 0.002 23.8 2.9 32 16-49 3-34 (116)
129 cd03134 GATase1_PfpI_like A ty 22.3 1.8E+02 0.0039 22.8 4.6 29 22-51 7-35 (165)
130 COG0300 DltE Short-chain dehyd 22.3 1.2E+02 0.0027 27.1 4.0 38 11-53 3-41 (265)
131 cd03811 GT1_WabH_like This fam 22.2 1.7E+02 0.0036 24.1 4.6 28 27-55 15-42 (353)
132 TIGR01382 PfpI intracellular p 22.2 1.6E+02 0.0035 23.1 4.3 31 22-53 7-37 (166)
133 COG1938 Archaeal enzymes of AT 22.0 2E+02 0.0043 25.6 5.2 36 130-169 163-198 (244)
134 PRK04761 ppnK inorganic polyph 21.7 1.7E+02 0.0037 25.8 4.7 34 101-145 24-58 (246)
135 TIGR00511 ribulose_e2b2 ribose 21.7 1.3E+02 0.0028 27.2 4.0 44 102-145 183-226 (301)
136 PRK02231 ppnK inorganic polyph 21.1 3.3E+02 0.0072 24.3 6.5 34 101-145 41-75 (272)
137 TIGR01303 IMP_DH_rel_1 IMP deh 21.1 3.9E+02 0.0085 25.8 7.4 101 28-142 224-334 (475)
138 PRK13782 phosphocarrier protei 21.1 1.4E+02 0.0029 21.5 3.3 34 15-49 4-37 (82)
139 TIGR00257 IMPACT_YIGZ uncharac 20.9 1.3E+02 0.0028 25.9 3.6 29 20-49 69-99 (204)
140 TIGR01003 PTS_HPr_family Phosp 20.8 1.2E+02 0.0027 21.7 3.1 35 14-49 3-37 (82)
141 PTZ00075 Adenosylhomocysteinas 20.8 2.2E+02 0.0048 27.7 5.6 67 30-107 58-129 (476)
142 PF02684 LpxB: Lipid-A-disacch 20.8 76 0.0016 29.7 2.4 22 120-143 265-286 (373)
143 TIGR01441 GPR GPR endopeptidas 20.7 3.3E+02 0.0071 25.7 6.5 52 82-145 157-231 (358)
144 PLN02935 Bifunctional NADH kin 20.5 2.6E+02 0.0056 27.6 6.0 34 101-145 261-295 (508)
145 TIGR00512 salvage_mtnA S-methy 20.5 1.5E+02 0.0032 27.4 4.2 44 101-144 224-267 (331)
146 PRK00726 murG undecaprenyldiph 20.3 1.2E+02 0.0026 26.7 3.5 23 121-144 258-280 (357)
147 PRK05784 phosphoribosylamine-- 20.3 7.8E+02 0.017 23.7 10.2 31 15-51 1-33 (486)
148 PRK02858 germination protease; 20.3 3.3E+02 0.0071 25.8 6.4 52 82-145 167-241 (369)
149 PF03324 Herpes_HEPA: Herpesvi 20.2 75 0.0016 23.9 1.9 27 14-40 29-55 (93)
150 cd03812 GT1_CapH_like This fam 20.1 87 0.0019 26.9 2.5 26 28-54 16-41 (358)
151 PF14258 DUF4350: Domain of un 20.1 2E+02 0.0044 19.5 4.0 32 16-49 37-70 (70)
152 cd04955 GT1_like_6 This family 20.0 1.2E+02 0.0027 25.9 3.4 24 29-53 20-43 (363)
No 1
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=100.00 E-value=1.7e-67 Score=446.52 Aligned_cols=187 Identities=42% Similarity=0.643 Sum_probs=153.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecc----cCCceeEEeCCChHHHH
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD----FDGVTAYAVSGTPADCA 90 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~----~~g~~~~~v~GTPaDcV 90 (213)
|||||||||||+||||++|+++|++.| |||+||||++||||+||++|+++|++++++. ..+...|+|+|||+|||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~L~~~g-~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGIDAPGIRALAKALSALG-HDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-TTSHHHHHHHHHHTTTS-SEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhcC-CeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 899999999999999999999998887 7999999999999999999999999998764 35678999999999999
Q ss_pred HHhhhccCCCC-CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHH
Q 028146 91 SLGVSQALFPS-VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINA 169 (213)
Q Consensus 91 ~~al~~~l~~~-~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~ 169 (213)
++||+. ++++ +|||||||||+|.|+|.+++||||||||+||+++||||||||++.... ....+|+.+++++.+++++
T Consensus 80 ~~al~~-~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~~~-~~~~~~~~aa~~~~~~i~~ 157 (196)
T PF01975_consen 80 KLALDG-LLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSDSE-SKDPDFETAARFAVKLIEK 157 (196)
T ss_dssp HHHHHC-TSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSST--SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccccCC-CcHHHHHHHHHHHHHHHHH
Confidence 999996 5554 599999999999999999999999999999999999999999986531 1234799999999888888
Q ss_pred HHHHHHhcCCCCCcEEEecCCCCC-CCCCceEEEeeeceE
Q 028146 170 ILAEIRNQTYPERCFLNIDLPTDI-PNNKVNSCINILIFY 208 (213)
Q Consensus 170 l~~~~~~~~~p~~~~lNVN~P~~~-~~~~g~~~tr~~~~~ 208 (213)
++ +..+|++++||||||..+ .+.+|+|+||++.++
T Consensus 158 ~~----~~~~~~~~~lNVN~P~~~~~~~~g~~~t~~g~~~ 193 (196)
T PF01975_consen 158 LL----KNPLPPGVVLNVNFPSVPCEEIKGIKVTRLGRRR 193 (196)
T ss_dssp HH----HSGSSTTSEEEEEEESS-GGG-SEEEE-B--CCS
T ss_pred Hh----hcCCCCCcEEEEEcCCCCcccCCCEEEEECCcce
Confidence 76 455789999999999976 478999999999873
No 2
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=1.7e-66 Score=455.92 Aligned_cols=185 Identities=32% Similarity=0.531 Sum_probs=167.1
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccC-CceeEEeCCChHHHH
Q 028146 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCA 90 (213)
Q Consensus 12 ~~~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~-g~~~~~v~GTPaDcV 90 (213)
.++|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++||++++++.+ +..+|+|+|||+|||
T Consensus 3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV 80 (257)
T PRK13932 3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG--RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI 80 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHhCC--CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence 468999999999999999999999999877 89999999999999999999999999998743 556899999999999
Q ss_pred HHhhhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHHH
Q 028146 91 SLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAI 170 (213)
Q Consensus 91 ~~al~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l 170 (213)
++||+. +++.+|||||||||+|.|+|.+++||||||||+||+++||||||||+... ...+|+.+++++.++++++
T Consensus 81 ~lal~~-~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~~~----~~~~~~~aa~~~~~l~~~l 155 (257)
T PRK13932 81 KVALSH-ILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLTTY----ENADFTYAGKFARKLARKV 155 (257)
T ss_pred HHHHHh-hcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcccC----CcCCHHHHHHHHHHHHHHH
Confidence 999986 66778999999999999999999999999999999999999999998532 1237999999999888876
Q ss_pred HHHHHhcCCCCCcEEEecCCCCC-CCCCceEEEeeece
Q 028146 171 LAEIRNQTYPERCFLNIDLPTDI-PNNKVNSCINILIF 207 (213)
Q Consensus 171 ~~~~~~~~~p~~~~lNVN~P~~~-~~~~g~~~tr~~~~ 207 (213)
+ ++.+|++++||||||.++ .+++|+|+||++.+
T Consensus 156 ~----~~~~p~~~~LNVN~P~~~~~~~~gik~t~~g~~ 189 (257)
T PRK13932 156 L----REGLPPDTILSVNIPNVPESDIQGVLITRQGRS 189 (257)
T ss_pred H----hcCCCCCcEEEEEeCCCCccccCCEEEeeCCCc
Confidence 6 456899999999999976 46899999999975
No 3
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=6.1e-66 Score=451.72 Aligned_cols=184 Identities=36% Similarity=0.556 Sum_probs=165.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccC--CceeEEeCCChHHHHHH
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD--GVTAYAVSGTPADCASL 92 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~--g~~~~~v~GTPaDcV~~ 92 (213)
|||||||||||+||||++|+++|++. |+|+||||++||||+||++|+++|+++++++.+ +.++|+|+|||||||++
T Consensus 1 M~ILvtNDDGi~apGl~aL~~~l~~~--~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~l 78 (253)
T PRK13933 1 MNILLTNDDGINAEGINTLAELLSKY--HEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVRV 78 (253)
T ss_pred CeEEEEcCCCCCChhHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHHH
Confidence 78999999999999999999999874 599999999999999999999999999998744 34689999999999999
Q ss_pred hhhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHHHHH
Q 028146 93 GVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILA 172 (213)
Q Consensus 93 al~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~ 172 (213)
||+. +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+..... .+.+|+.+++++++++++++
T Consensus 79 al~~-l~~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~~~~~--~~~~~~~a~~~~~~lv~~l~- 154 (253)
T PRK13933 79 ALDK-LVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSADVKKG--KDENYKIAAKYALEVLNILK- 154 (253)
T ss_pred HHHH-hcCCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEeccCCC--CcccHHHHHHHHHHHHHHHH-
Confidence 9986 6678999999999999999999999999999999999999999999864211 12369999999999988876
Q ss_pred HHHhcCCCCCcEEEecCCCCC-CCCCceEEEeeece
Q 028146 173 EIRNQTYPERCFLNIDLPTDI-PNNKVNSCINILIF 207 (213)
Q Consensus 173 ~~~~~~~p~~~~lNVN~P~~~-~~~~g~~~tr~~~~ 207 (213)
++.+|++++||||||.++ .+++|+|+||++.+
T Consensus 155 ---~~~~p~~~~lNvNiP~~~~~~~~g~k~t~~g~r 187 (253)
T PRK13933 155 ---KEDLKNDVVLNLNVPFCSEEEIKGIKVCKVGNK 187 (253)
T ss_pred ---hcCCCCCcEEEEecCCCchhhcCCeEEEeCCcc
Confidence 456899999999999986 47899999999976
No 4
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=6.4e-66 Score=451.35 Aligned_cols=182 Identities=41% Similarity=0.523 Sum_probs=164.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeeccc-CCceeEEeCCChHHHHHHh
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG 93 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a 93 (213)
|||||||||||+||||++|+++|++. |+|+||||++||||+||++|+++|+++++++. ++..+|+|+|||+|||++|
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~--~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDcV~la 78 (253)
T PRK13935 1 MNILVTNDDGITSPGIIILAEYLSEK--HEVFVVAPDKERSATGHAITIRVPLWAKKVFISERFVAYATTGTPADCVKLG 78 (253)
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHhC--CcEEEEccCCCCccccccccCCCCceEEEeecCCCccEEEECCcHHHHHHHH
Confidence 78999999999999999999999864 59999999999999999999999999999874 3566899999999999999
Q ss_pred hhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHHHHHH
Q 028146 94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAE 173 (213)
Q Consensus 94 l~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~ 173 (213)
|+. +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+... ...+|+.+++++.++++++.
T Consensus 79 l~~-~~~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~----~~~~~~~aa~~~~~l~~~l~-- 151 (253)
T PRK13935 79 YDV-IMDKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSADF----ENPDYETAARFLLNFLEEFD-- 151 (253)
T ss_pred HHh-hccCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcccC----CccCHHHHHHHHHHHHHHHH--
Confidence 985 66779999999999999999999999999999999999999999998421 12379999999998888765
Q ss_pred HHhcCCCCCcEEEecCCCCC-CCCCceEEEeeece
Q 028146 174 IRNQTYPERCFLNIDLPTDI-PNNKVNSCINILIF 207 (213)
Q Consensus 174 ~~~~~~p~~~~lNVN~P~~~-~~~~g~~~tr~~~~ 207 (213)
+..+|++++||||||..+ .+++|+|+||++.+
T Consensus 152 --~~~~p~~~~LNVN~P~~~~~~~~gik~tr~g~~ 184 (253)
T PRK13935 152 --FSLLPPFTALNINVPSVPYGEIKGWKLTRQSRR 184 (253)
T ss_pred --hcCCCCCcEEEEEeCcCChhhcCCeEEeeCCCc
Confidence 456899999999999976 46899999999975
No 5
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=100.00 E-value=1e-65 Score=448.36 Aligned_cols=186 Identities=40% Similarity=0.641 Sum_probs=166.5
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeeccc-CCceeEEeCCChHHHHHHh
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLG 93 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~-~g~~~~~v~GTPaDcV~~a 93 (213)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++. ++.++|+|+|||||||++|
T Consensus 1 M~ILltNDDGi~a~Gi~aL~~~l~~~g--~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~~v~GTPaDcv~~g 78 (244)
T TIGR00087 1 MKILLTNDDGIHSPGIRALYQALKELG--EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGAHIYAVDGTPTDCVILG 78 (244)
T ss_pred CeEEEECCCCCCCHhHHHHHHHHHhCC--CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCccEEEEcCcHHHHHHHH
Confidence 799999999999999999999999987 8999999999999999999999999999874 3557899999999999999
Q ss_pred hhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCC--CCCccHHHHHHHHHHHHHHHH
Q 028146 94 VSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK--SNVNDYTLAAEACLPIINAIL 171 (213)
Q Consensus 94 l~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~--~~~~~~~~aa~~~~~li~~l~ 171 (213)
|+. +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+...... +...+|+.+++++.+++++++
T Consensus 79 l~~-l~~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~~~~~~~~~~~~~~~~aa~~~~~li~~l~ 157 (244)
T TIGR00087 79 INE-LMPEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNLL 157 (244)
T ss_pred HHH-hccCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEecccCcccccccccHHHHHHHHHHHHHHHH
Confidence 985 67889999999999999999999999999999999999999999998643211 113469999999998888876
Q ss_pred HHHHhcCCCCCcEEEecCCCCCC-CCCceEEEeeece
Q 028146 172 AEIRNQTYPERCFLNIDLPTDIP-NNKVNSCINILIF 207 (213)
Q Consensus 172 ~~~~~~~~p~~~~lNVN~P~~~~-~~~g~~~tr~~~~ 207 (213)
+..+|++++||||||.++. +.+|+|+||++.+
T Consensus 158 ----~~~~p~~~~lNVN~P~~~~~~~~g~~~t~~~~~ 190 (244)
T TIGR00087 158 ----KNGLPGGDLLNVNVPLVPSIQNTGIRITRLGRR 190 (244)
T ss_pred ----hcCCCCCcEEEEEeCCCCcccCCCEEEEECCcc
Confidence 3568899999999999764 6899999999976
No 6
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=100.00 E-value=6.1e-66 Score=449.91 Aligned_cols=183 Identities=42% Similarity=0.650 Sum_probs=164.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHHHHHhh
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (213)
|||||||||||+||||++|+++|+ .+ +||+||||++||||+||++|+++||++++++ ...|+|+|||+|||.+||
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~-~~-~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~---~~~~av~GTPaDCV~lal 75 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALR-EG-ADVTVVAPDREQSGASHSLTLHEPLRVRQVD---NGAYAVNGTPADCVILGL 75 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHh-hC-CCEEEEccCCCCcccccccccccCceeeEec---cceEEecCChHHHHHHHH
Confidence 799999999999999999999999 44 6999999999999999999999999999986 367999999999999999
Q ss_pred hccCCCC-CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCC-CCCCccHHHHHHHHHHHHHHHHH
Q 028146 95 SQALFPS-VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGG-KSNVNDYTLAAEACLPIINAILA 172 (213)
Q Consensus 95 ~~~l~~~-~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~-~~~~~~~~~aa~~~~~li~~l~~ 172 (213)
+. ++++ +|||||||||.|.|+|.|++|||||||||||+++||||||+|+..... .....+|+.|++++..+++++++
T Consensus 76 ~~-l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~~~~~~~~~~~e~A~~~~~~lv~~l~~ 154 (252)
T COG0496 76 NE-LLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYREAFGKQDVDFETAAKVARALVEALLA 154 (252)
T ss_pred HH-hccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhccccccccccHHHHHHHHHHHHHHHHh
Confidence 85 6664 499999999999999999999999999999999999999999976532 11235899999999988888764
Q ss_pred HHHhcCCCCCcEEEecCCCCC-CCCCceEEEeeece
Q 028146 173 EIRNQTYPERCFLNIDLPTDI-PNNKVNSCINILIF 207 (213)
Q Consensus 173 ~~~~~~~p~~~~lNVN~P~~~-~~~~g~~~tr~~~~ 207 (213)
.++|+..+||||||+++ .+++|+|+||+|.+
T Consensus 155 ----~p~~~~~llNVNiP~~~~~~~~gi~vtr~g~~ 186 (252)
T COG0496 155 ----NPLPPDTLLNVNIPNLPLEEIKGIRVTRLGRR 186 (252)
T ss_pred ----CCCCCCcEEEEeCCCCCccccCcEEEEechhh
Confidence 57899999999999976 47999999999944
No 7
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=100.00 E-value=2.5e-65 Score=447.28 Aligned_cols=183 Identities=38% Similarity=0.595 Sum_probs=163.3
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHHHHHhh
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (213)
|||||||||||+||||++|+++|++.+ +|+||||++||||+||++|+++|+++++++ ...|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~~--~V~VvAP~~~qSg~g~ait~~~pl~~~~~~---~~~~~v~GTPaDcV~~gl 75 (250)
T PRK00346 1 MRILLTNDDGIHAPGIRALAEALRELA--DVTVVAPDRERSGASHSLTLTRPLRVEKVD---NGFYAVDGTPTDCVHLAL 75 (250)
T ss_pred CeEEEECCCCCCChhHHHHHHHHHhCC--CEEEEeCCCCCcCCcccccCCCCeEEEEec---CCeEEECCcHHHHHHHHH
Confidence 799999999999999999999999874 999999999999999999999999999975 346999999999999999
Q ss_pred hccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q 028146 95 SQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEI 174 (213)
Q Consensus 95 ~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~l~~~~ 174 (213)
+. +++++|||||||||+|.|+|.+++||||||||+||+++||||||||+..........+|+.++++++++++++++
T Consensus 76 ~~-l~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~~~~~~~~~~~~~~a~~~~~~li~~l~~-- 152 (250)
T PRK00346 76 NG-LLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLAVSEGSRGWRDFETAAKVARELVRKLLE-- 152 (250)
T ss_pred Hh-hccCCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecccccccCchhhHHHHHHHHHHHHHHHHh--
Confidence 85 667799999999999999999999999999999999999999999986421111223699999999999888764
Q ss_pred HhcCCCCCcEEEecCCCCC-CCCCceEEEeeece
Q 028146 175 RNQTYPERCFLNIDLPTDI-PNNKVNSCINILIF 207 (213)
Q Consensus 175 ~~~~~p~~~~lNVN~P~~~-~~~~g~~~tr~~~~ 207 (213)
..+|++++||||||.++ .+++|+|+||++.+
T Consensus 153 --~~~p~~~~lNvN~P~~~~~~~~g~~~t~~g~~ 184 (250)
T PRK00346 153 --KPLPPGTLLNVNVPDLPPEEIKGIRVTRLGKR 184 (250)
T ss_pred --cCCCCCcEEEEEeCCCCcccCCCEEEEeCCCc
Confidence 45889999999999976 47899999999975
No 8
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=2.2e-65 Score=449.96 Aligned_cols=189 Identities=30% Similarity=0.459 Sum_probs=161.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcC--CceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHHHHH
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTN--RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASL 92 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g--~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~ 92 (213)
|||||||||||+||||++|+++|++.. .++|+||||++||||+||+||+++||++++++ ...|+|+|||||||++
T Consensus 1 M~ILlTNDDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~---~~~yav~GTPaDCV~l 77 (261)
T PRK13931 1 MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG---PRRFAAEGSPADCVLA 77 (261)
T ss_pred CeEEEEcCCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC---CCeEEEcCchHHHHHH
Confidence 789999999999999999999998751 14999999999999999999999999999875 3469999999999999
Q ss_pred hhhccCCC-CCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCC-CCCCCccHHHHHHHHHHHHHHH
Q 028146 93 GVSQALFP-SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVG-GKSNVNDYTLAAEACLPIINAI 170 (213)
Q Consensus 93 al~~~l~~-~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~-~~~~~~~~~~aa~~~~~li~~l 170 (213)
||+. +++ .+|||||||||+|.|+|.+++||||||||+||+++||||||||+.+.. ....+.+|+.++++++++++++
T Consensus 78 al~~-~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~~~~~~~~~~~~~~~~a~~~~~~l~~~~ 156 (261)
T PRK13931 78 ALYD-VMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKL 156 (261)
T ss_pred HHHH-hcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEeeccCCCccccccHHHHHHHHHHHHHHH
Confidence 9986 566 789999999999999999999999999999999999999999986431 1111236999999999999888
Q ss_pred HHHHHhcCCCCCcEEEecCCCCC-CCCCceEEEeeece
Q 028146 171 LAEIRNQTYPERCFLNIDLPTDI-PNNKVNSCINILIF 207 (213)
Q Consensus 171 ~~~~~~~~~p~~~~lNVN~P~~~-~~~~g~~~tr~~~~ 207 (213)
+++......|++++||||||..+ .+++|+|+||++.+
T Consensus 157 l~~~~~~~~~~~~~lNVN~P~~~~~~~~gik~t~~g~~ 194 (261)
T PRK13931 157 LEAGPWDDEDYRLFYNVNFPPVPAADVKGIRVAAQGFR 194 (261)
T ss_pred HhccCCCCCCCCeEEEEEeCcCCcccCCceEEeECCcc
Confidence 75321112244589999999976 46899999999864
No 9
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=100.00 E-value=6.9e-64 Score=440.78 Aligned_cols=183 Identities=30% Similarity=0.454 Sum_probs=160.6
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHHHHHhh
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (213)
|||||||||||+||||++|+++|++.| +|+||||++||||+||++|+++|+++++++.++.++|+|+|||+|||++||
T Consensus 1 M~ILlTNDDGi~apGi~aL~~al~~~g--~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~lal 78 (266)
T PRK13934 1 MKILVTNDDGVHSPGLRLLYEFVSPLG--EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYLAT 78 (266)
T ss_pred CeEEEEcCCCCCCHHHHHHHHHHHhCC--cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHHHH
Confidence 789999999999999999999999876 899999999999999999999999999987556778999999999999999
Q ss_pred hccCCCCCCcEEEecCCCCCcCccc-ccchhhHHHHHHHHHcCCCEEEEEeecCCCC---CCCccHHHHHHHHHHHHHHH
Q 028146 95 SQALFPSVPDLVISGINMGSNCGYH-VVYSGTVAGAREAFFHGVPSVSISYDWVGGK---SNVNDYTLAAEACLPIINAI 170 (213)
Q Consensus 95 ~~~l~~~~PDLVvSGIN~G~N~g~d-v~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~---~~~~~~~~aa~~~~~li~~l 170 (213)
+. + +++|||||||||+|.|+|.+ ++||||||||+||+++||||||||+...... .+..+|+.+++++.++++++
T Consensus 79 ~~-l-~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~~~~~~~~~~~~~~~~~~a~~~~~~lv~~l 156 (266)
T PRK13934 79 YG-L-GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSAYVDDWEELLEDGEALEIMKAVVRATAEYV 156 (266)
T ss_pred Hh-c-cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEecccCCcccccccchhHHHHHHHHHHHHHHH
Confidence 85 5 67899999999999999999 8999999999999999999999998542101 01125888888888877766
Q ss_pred HHHHHhcCCCCCc-EEEecCCCCCCCCCce--EEEeeece
Q 028146 171 LAEIRNQTYPERC-FLNIDLPTDIPNNKVN--SCINILIF 207 (213)
Q Consensus 171 ~~~~~~~~~p~~~-~lNVN~P~~~~~~~g~--~~tr~~~~ 207 (213)
+ +..+|+++ +||||||..+. +|+ |+||++.+
T Consensus 157 ~----~~~~p~~~~~LNVN~P~~~~--~gi~~~~tr~g~r 190 (266)
T PRK13934 157 L----KRGMPKGVDVISVNFPRRLR--RGVKAKLVKAAKL 190 (266)
T ss_pred H----hcCCCCCCcEEEEecCCCCC--CCCceEEecCCcc
Confidence 5 45689996 99999998764 788 99999975
No 10
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=92.85 E-value=0.2 Score=45.32 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=27.0
Q ss_pred CeEEEecCCCC-CCccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 15 PTIMVTNDDGI-DAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 15 ~~ILlTNDDGi-~s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
||||++.=-+. +.--+..|+++|++.| |+|++++++.-
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rG-h~V~~~t~~~~ 39 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAG-HEVRVATPPEF 39 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCC-CeEEEeeCHhH
Confidence 67777642221 1123678999999999 89999999863
No 11
>PLN02846 digalactosyldiacylglycerol synthase
Probab=92.38 E-value=1 Score=43.20 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=31.4
Q ss_pred CCCCeEEEecCC------CCCCccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 12 DHKPTIMVTNDD------GIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 12 ~~~~~ILlTNDD------Gi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
..+|||+|.-|= |. +-.+..+++.|.+.|+|+|+||||+..
T Consensus 2 ~~~mrIaivTdt~lP~vnGv-a~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGT-AVNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCe-eccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 357899888774 43 346677778999999669999999764
No 12
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=91.12 E-value=0.51 Score=43.43 Aligned_cols=104 Identities=17% Similarity=0.117 Sum_probs=61.4
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHHHHHhh
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGV 94 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al 94 (213)
|||++.=..=-+..-.+.+.+.|++.| |+|.|.+-+.++ ...+-+...+.-.. -|. + .+|+.+=+...+
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~G-heV~it~R~~~~-----~~~LL~~yg~~y~~-iG~--~--g~~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRG-HEVLITARDKDE-----TEELLDLYGIDYIV-IGK--H--GDSLYGKLLESI 69 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCC-CEEEEEEeccch-----HHHHHHHcCCCeEE-EcC--C--CCCHHHHHHHHH
Confidence 566665444445566788899999999 899999986532 11111110000000 011 1 144444332222
Q ss_pred h------ccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEE
Q 028146 95 S------QALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (213)
Q Consensus 95 ~------~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (213)
. ..+...+||++||+- -+.|++-|...|+|+|+|.
T Consensus 70 ~R~~~l~~~~~~~~pDv~is~~--------------s~~a~~va~~lgiP~I~f~ 110 (335)
T PF04007_consen 70 ERQYKLLKLIKKFKPDVAISFG--------------SPEAARVAFGLGIPSIVFN 110 (335)
T ss_pred HHHHHHHHHHHhhCCCEEEecC--------------cHHHHHHHHHhCCCeEEEe
Confidence 1 112235899999874 3689999999999999997
No 13
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=86.64 E-value=1.3 Score=40.00 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHhcCCceEEEEecCCCCCcCcccc
Q 028146 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSI 61 (213)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~si 61 (213)
||--+|+++|+..| .+|++|..+...+.....+
T Consensus 63 ~GA~aLa~aL~~lG-~~~~ivtd~~~~~~~~~~~ 95 (291)
T PF14336_consen 63 PGAAALARALQALG-KEVVIVTDERCAPVVKAAV 95 (291)
T ss_pred HHHHHHHHHHHHcC-CeEEEEECHHHHHHHHHHH
Confidence 79999999999999 6999999887776665543
No 14
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=86.35 E-value=5.4 Score=35.37 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=28.8
Q ss_pred CeEEEe-cCCCCCCccHHHHHHHHHhcCCceEEEEecCC
Q 028146 15 PTIMVT-NDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 15 ~~ILlT-NDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
|||+++ +=.|-+.--...|+++|++.| |+|.++....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g-~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRG-WEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCC-CEEEEEECCC
Confidence 788888 556655445668999999998 8999998854
No 15
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=84.94 E-value=17 Score=30.79 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHhcCCceEEEEecCCCCC
Q 028146 27 APGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (213)
Q Consensus 27 s~Gi~aL~~aL~~~g~~~V~VVAP~~~~S 55 (213)
...+..|+++|.+.| |+|.++.+.....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 44 (364)
T cd03814 17 VRTLQRLVEHLRARG-HEVLVIAPGPFRE 44 (364)
T ss_pred ehHHHHHHHHHHHCC-CEEEEEeCCchhh
Confidence 357899999999999 8999999876543
No 16
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.21 E-value=8.3 Score=33.73 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.2
Q ss_pred cHHHHHHHHHhcCCceEEEEecCC
Q 028146 29 GLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
.+..|+++|.+.| |||.|+++..
T Consensus 15 ~~~~la~~l~~~G-~ev~v~~~~~ 37 (350)
T cd03785 15 PALALAEELRERG-AEVLFLGTKR 37 (350)
T ss_pred HHHHHHHHHHhCC-CEEEEEECCC
Confidence 4568999999999 8999998854
No 17
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=83.53 E-value=2.5 Score=38.30 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCC
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
+..|+++|++.| |+|+++.++...
T Consensus 12 ~l~lA~~L~~~G-h~V~~~~~~~~~ 35 (392)
T TIGR01426 12 TLGVVEELVARG-HRVTYATTEEFA 35 (392)
T ss_pred cHHHHHHHHhCC-CeEEEEeCHHHH
Confidence 457899999999 899999997654
No 18
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=83.41 E-value=6.6 Score=34.87 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=23.7
Q ss_pred CCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEee
Q 028146 100 PSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 100 ~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
..+||||||-... .+.+.|...|||+|.+.-.
T Consensus 91 ~~~pDlVi~d~~~--------------~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 91 EYNPDLIISDFEY--------------STVVAAKLLKIPVICISNQ 122 (321)
T ss_pred hcCCCEEEECCch--------------HHHHHHHhcCCCEEEEecc
Confidence 3589999987432 2266777899999999853
No 19
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=81.50 E-value=3.1 Score=31.80 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=28.5
Q ss_pred EEEecCCCCCCcc----HHHHHHHHHhcCCceEEEEecCCCCCcCcc
Q 028146 17 IMVTNDDGIDAPG----LRSLVRVLVSTNRYTVQVCAPDSEKSAVSH 59 (213)
Q Consensus 17 ILlTNDDGi~s~G----i~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~ 59 (213)
||++|.-....-| +..|.++|.+.| |||+|++|..+..-...
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~~~ 46 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIEEE 46 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-SST
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccchhh
Confidence 6888887777656 567888889999 89999999766554443
No 20
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=81.47 E-value=11 Score=32.81 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=24.2
Q ss_pred eEEEe-cCCCCCCccHHHHHHHHHhcCCceEEEEecCC
Q 028146 16 TIMVT-NDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 16 ~ILlT-NDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
||+++ =..|-+......|+++|++.| |||+++++..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g-~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRG-VEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCC-CEEEEEeCCC
Confidence 55554 333333334458999999999 8999998743
No 21
>PRK10307 putative glycosyl transferase; Provisional
Probab=80.90 E-value=2.9 Score=37.99 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=28.5
Q ss_pred CeEEEecCCCCCCc-----cHHHHHHHHHhcCCceEEEEecC
Q 028146 15 PTIMVTNDDGIDAP-----GLRSLVRVLVSTNRYTVQVCAPD 51 (213)
Q Consensus 15 ~~ILlTNDDGi~s~-----Gi~aL~~aL~~~g~~~V~VVAP~ 51 (213)
||||+.++.-..-. -+..|+++|.+.| |+|+|++|.
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecC
Confidence 68999887643222 3789999999999 899999975
No 22
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=78.06 E-value=5.1 Score=34.30 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=30.3
Q ss_pred CeEEEecCCCCC----Ccc-----HHHHHHHHHhcCCceEEEEecCCCCC
Q 028146 15 PTIMVTNDDGID----APG-----LRSLVRVLVSTNRYTVQVCAPDSEKS 55 (213)
Q Consensus 15 ~~ILlTNDDGi~----s~G-----i~aL~~aL~~~g~~~V~VVAP~~~~S 55 (213)
||||+..+.-+. .-| +..|.++|.+.| |+|+++.|....+
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~~ 49 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSKT 49 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCCc
Confidence 689998876432 222 788999999998 8999999876543
No 23
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.49 E-value=10 Score=35.44 Aligned_cols=111 Identities=25% Similarity=0.379 Sum_probs=75.0
Q ss_pred EEecCCCCCCccHHHHHHHHHhc-CCceEEEEecCCCCCcCcccc-cCCCceeeeecccCCceeEEeCCC---hHHHHHH
Q 028146 18 MVTNDDGIDAPGLRSLVRVLVST-NRYTVQVCAPDSEKSAVSHSI-TWRHPISARPADFDGVTAYAVSGT---PADCASL 92 (213)
Q Consensus 18 LlTNDDGi~s~Gi~aL~~aL~~~-g~~~V~VVAP~~~~Sg~g~si-t~~~pl~v~~~~~~g~~~~~v~GT---PaDcV~~ 92 (213)
||||-=|+.+.+ +...+.|.+. |..=+.+.+|++.-.|...+- +...- +.+ ..|.++|+.-|. |.....-
T Consensus 3 LvtN~tgv~~~~-~~~~d~L~~~~~v~l~alF~PEHG~~G~~~ag~~v~~~--~D~--~tglpVySLYG~~~~Pt~~mL~ 77 (365)
T PF07075_consen 3 LVTNQTGVDSDG-RHTIDVLAAAPGVNLVALFGPEHGFRGDAQAGEKVEDY--IDP--RTGLPVYSLYGKTRKPTPEMLK 77 (365)
T ss_pred EEecccccCCCC-cCHHHHHhhCCCCCEEEEecCCCCCccchhcCCcCCCC--cCC--CCCCeEEECCCCCCCCCHHHHh
Confidence 899999999766 5567888876 532357889999877775542 21111 011 136677877666 8777666
Q ss_pred hhhccCCCCCCcEEEecCCCCCcCcc-cccchhhHHHHHHHHH-cCCCEEEEEee
Q 028146 93 GVSQALFPSVPDLVISGINMGSNCGY-HVVYSGTVAGAREAFF-HGVPSVSISYD 145 (213)
Q Consensus 93 al~~~l~~~~PDLVvSGIN~G~N~g~-dv~ySGTVgAA~ea~~-~GiPaIAvS~~ 145 (213)
+++.+++ |+ ..+|. ..+|--|++=+|||+. .|+|-|-+=-.
T Consensus 78 ~vDvlvf----Di--------QDvG~R~YTYi~Tl~~~MeAaa~~g~~vvVLDRP 120 (365)
T PF07075_consen 78 GVDVLVF----DI--------QDVGVRFYTYISTLYYVMEAAAENGKPVVVLDRP 120 (365)
T ss_pred CCCEEEE----eC--------ccCCchHHHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 6664332 33 34664 5789999999999887 89999877543
No 24
>PRK09864 putative peptidase; Provisional
Probab=76.63 E-value=8.9 Score=35.66 Aligned_cols=136 Identities=13% Similarity=0.042 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHhcC--CceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHHHHHhhhc---cCCCCC
Q 028146 28 PGLRSLVRVLVSTN--RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQ---ALFPSV 102 (213)
Q Consensus 28 ~Gi~aL~~aL~~~g--~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~---~l~~~~ 102 (213)
.|..+|.++|+... ..+|+.++--+|-=|...+.+....+. ..-+.++|.||++.+--.-.. .-+.+.
T Consensus 178 ~g~~~lle~l~~l~~~~~~vy~v~TvQEEvGlrGA~~aa~~i~-------PDiaIavDvt~~~d~p~~~~~~~~~~lG~G 250 (356)
T PRK09864 178 IGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEHIK-------PDVVIVLDTAVAGDVPGIDNIKYPLKLGQG 250 (356)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEEEcchhcchHHHHHHHhcCC-------CCEEEEEecccCCCCCCCcccccccccCCC
Confidence 46677777776542 257888888877777665555322221 134678898886543211110 001345
Q ss_pred CcEEEe--cCCCCC-------------cCcccc-cc--hhhHHHHHHHHHcCCCEEEEEeecCCCCC-----CCccHHHH
Q 028146 103 PDLVIS--GINMGS-------------NCGYHV-VY--SGTVAGAREAFFHGVPSVSISYDWVGGKS-----NVNDYTLA 159 (213)
Q Consensus 103 PDLVvS--GIN~G~-------------N~g~dv-~y--SGTVgAA~ea~~~GiPaIAvS~~~~~~~~-----~~~~~~~a 159 (213)
|=|.+- |.+.-+ |+-... .. .||=|+|++-...|+|++.+|...+.-.+ +-.|++.+
T Consensus 251 p~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~e~~ 330 (356)
T PRK09864 251 PGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDAL 330 (356)
T ss_pred CeEEEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHHHHH
Confidence 655332 333221 333332 22 38999999988899999999997643221 23467777
Q ss_pred HHHHHHHHHHH
Q 028146 160 AEACLPIINAI 170 (213)
Q Consensus 160 a~~~~~li~~l 170 (213)
.++...+++.+
T Consensus 331 ~~Ll~~~~~~l 341 (356)
T PRK09864 331 LTLIRDFLTTL 341 (356)
T ss_pred HHHHHHHHHhc
Confidence 66665555443
No 25
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=75.25 E-value=11 Score=34.86 Aligned_cols=134 Identities=22% Similarity=0.130 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHhcC----CceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHHHHHhhhccCCCCCC
Q 028146 28 PGLRSLVRVLVSTN----RYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVP 103 (213)
Q Consensus 28 ~Gi~aL~~aL~~~g----~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~P 103 (213)
.|..+|.++|+... ..+|+.++.-+|.=|...|.+...-+. ...+.++|.||++...---...| .+.|
T Consensus 181 ~g~a~l~e~l~~l~~~~~~~~l~~~~tvqEEvG~rGA~~aa~~i~-------pD~aI~vDv~~~~d~~~~~~~~l-g~Gp 252 (350)
T TIGR03107 181 YGVLMILELLESLKDQELPNTLIAGANVQEEVGLRGAHVSTTKFN-------PDIFFAVDCSPAGDIYGDQGGKL-GEGT 252 (350)
T ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEEChhhcCchhhhhHHhhCC-------CCEEEEEecCCcCCCCCCCcccc-CCCc
Confidence 45666666665432 147888888777777655554322211 13467888888643211000012 3456
Q ss_pred cEEEe--cCCCCC-------------cCcccccch--hhHHHHHHHHHcCCCEEEEEeecCCCCC-----CCccHHHHHH
Q 028146 104 DLVIS--GINMGS-------------NCGYHVVYS--GTVAGAREAFFHGVPSVSISYDWVGGKS-----NVNDYTLAAE 161 (213)
Q Consensus 104 DLVvS--GIN~G~-------------N~g~dv~yS--GTVgAA~ea~~~GiPaIAvS~~~~~~~~-----~~~~~~~aa~ 161 (213)
=|.+. |...=+ |+-.....+ ||=|+|+.=+..|+|++.+|...+.-.+ +..|++.+.+
T Consensus 253 ~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~~~~~ 332 (350)
T TIGR03107 253 LLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQYYVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFLAAQA 332 (350)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHHHHHH
Confidence 55332 332211 222333233 7888888877899999999997643221 2346777776
Q ss_pred HHHHHHHH
Q 028146 162 ACLPIINA 169 (213)
Q Consensus 162 ~~~~li~~ 169 (213)
+...+++.
T Consensus 333 Ll~~~i~~ 340 (350)
T TIGR03107 333 FLQAIVKK 340 (350)
T ss_pred HHHHHHHh
Confidence 66655544
No 26
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=67.91 E-value=41 Score=27.89 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=25.6
Q ss_pred eEEEecCCCCCCcc----HHHHHHHHHhcCCceEEEEecCCCC
Q 028146 16 TIMVTNDDGIDAPG----LRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 16 ~ILlTNDDGi~s~G----i~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
|||+..+.-...-| +..|+++|.+.| |+|.++.+....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKG-HEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCC-CeEEEEecCCCC
Confidence 45665554332333 456778888788 799999987765
No 27
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=66.72 E-value=36 Score=31.00 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEe
Q 028146 98 LFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (213)
Q Consensus 98 l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (213)
+...+||+|++ .|. ..| +-+++.|.++|+|.+-..+
T Consensus 87 ~~~~kPdvvi~---~Gg------y~s--~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 87 IRKLKPDVIFS---KGG------FVS--VPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred HHhcCCCEEEe---cCc------hhh--HHHHHHHHHcCCCEEEECC
Confidence 33468999998 221 112 3467888999999986544
No 28
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=65.02 E-value=7.4 Score=33.54 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=28.0
Q ss_pred CeEEEecCCCC-C--CccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 15 PTIMVTNDDGI-D--APGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 15 ~~ILlTNDDGi-~--s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
||||+-|+... . ..-...|.++|.+.| |+|+|+.+...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAG-VDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcC-CceeEEEeecc
Confidence 68888876532 2 234677889999999 89999987664
No 29
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=64.99 E-value=7.3 Score=29.11 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCC
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSEKS 55 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~S 55 (213)
+..|+++|.+.| |+|.|++|..+..
T Consensus 7 ~~~l~~~L~~~G-~~V~v~~~~~~~~ 31 (160)
T PF13579_consen 7 VRELARALAARG-HEVTVVTPQPDPE 31 (160)
T ss_dssp HHHHHHHHHHTT--EEEEEEE---GG
T ss_pred HHHHHHHHHHCC-CEEEEEecCCCCc
Confidence 678999999999 8999999876655
No 30
>PRK06849 hypothetical protein; Provisional
Probab=64.73 E-value=12 Score=34.28 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=28.9
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCC
Q 028146 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 12 ~~~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
+.+++|||| |-.++.-..+++.|.++| ++|+++....
T Consensus 2 ~~~~~VLI~---G~~~~~~l~iar~l~~~G-~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLIT---GARAPAALELARLFHNAG-HTVILADSLK 38 (389)
T ss_pred CCCCEEEEe---CCCcHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence 467999999 555555677889999999 7999986653
No 31
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=61.41 E-value=8 Score=29.39 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCCceEEEEecCCC
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
.-+|.++|++.| |||.++++..-
T Consensus 15 ~lala~~L~~rG-h~V~~~~~~~~ 37 (139)
T PF03033_consen 15 FLALARALRRRG-HEVRLATPPDF 37 (139)
T ss_dssp HHHHHHHHHHTT--EEEEEETGGG
T ss_pred HHHHHHHHhccC-CeEEEeecccc
Confidence 348999999999 89999988543
No 32
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=61.20 E-value=11 Score=33.31 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=26.8
Q ss_pred CeEEEec-CCCCC--CccHHHHHHHHHhcCCceEEEEecCC
Q 028146 15 PTIMVTN-DDGID--APGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 15 ~~ILlTN-DDGi~--s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
||||+.. +.+.. ..-+..|+++|.+.| |+|.|+++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G-~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRG-HEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCC-CeEEEEcCCC
Confidence 5677664 44432 234688999999999 8999999753
No 33
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=60.42 E-value=16 Score=30.21 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=29.5
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcCCc-eEEEEec
Q 028146 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRY-TVQVCAP 50 (213)
Q Consensus 14 ~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~-~V~VVAP 50 (213)
+..|.||-|||+...+...+.+.|++.+.. ..+|++.
T Consensus 64 ~k~v~lTFDDg~~~~~~~~il~iL~k~~i~ATfFv~g~ 101 (267)
T COG0726 64 GKAVALTFDDGPLDGNTPRILPLLKKYGIKATFFVVGS 101 (267)
T ss_pred CCeEEEEeecCCCCCCcHHHHHHHHHcCCceEEEEehH
Confidence 366999999999998999999999998864 3344443
No 34
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=59.94 E-value=19 Score=33.60 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCCCeEEEecC-CCCC-----CccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 12 DHKPTIMVTND-DGID-----APGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 12 ~~~~~ILlTND-DGi~-----s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
.++|||++.-+ .... ..-+..|.+.|.+.| |+|+|+++...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G-~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG-DEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence 46799998865 2221 134678889999999 89999998654
No 35
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=58.01 E-value=80 Score=29.72 Aligned_cols=80 Identities=23% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHhhhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeecCCCC---------------CCCcc
Q 028146 91 SLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK---------------SNVND 155 (213)
Q Consensus 91 ~~al~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~~~~~---------------~~~~~ 155 (213)
.++|+..+ +.-||||.|= |.=-.....=....+-|+.|..+|+|.|+++-....+. ..+.+
T Consensus 274 ~~~l~~~l--~~ADlVITGE--G~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~~~~~~~~g~~a~~~i~~~~~~ 349 (375)
T TIGR00045 274 LLDLEQKI--KDADLVITGE--GRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDGVDVLPQHGIDAAFSILPSPMP 349 (375)
T ss_pred hhCHHHHh--cCCCEEEECC--CcccccccCCchHHHHHHHHHHhCCeEEEEecccCCChHHHHhcCccEEEEcCCCCCC
Confidence 44444322 4789999983 22111112224567999999999999999976432110 12345
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028146 156 YTLAAEACLPIINAILAEI 174 (213)
Q Consensus 156 ~~~aa~~~~~li~~l~~~~ 174 (213)
.+.+-+.+.+++++..+++
T Consensus 350 l~~a~~~~~~~l~~~~~~~ 368 (375)
T TIGR00045 350 LEDALQNASTNLERTAENI 368 (375)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555443
No 36
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=57.92 E-value=13 Score=35.56 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=39.3
Q ss_pred ChHHHHHHhhhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEE
Q 028146 85 TPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (213)
Q Consensus 85 TPaDcV~~al~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (213)
-+-.+..-=+. .+-+.+||+||.||- .|.|..=.-.|||..|.+. ..|||+++-=
T Consensus 60 n~eea~~~i~~-mv~k~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vt~M 114 (431)
T TIGR01918 60 NLEEAVARVLE-MLKDKEPDIFIAGPA--FNAGRYGVACGEICKVVQD-KLNVPAVTSM 114 (431)
T ss_pred CHHHHHHHHHH-HHHhcCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEe
Confidence 34444443333 243468999999984 5888877778999888776 5799999764
No 37
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=57.86 E-value=13 Score=35.56 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=38.6
Q ss_pred hHHHHHHhhhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEE
Q 028146 86 PADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (213)
Q Consensus 86 PaDcV~~al~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (213)
+-.+..-=+. .+-..+||+||.||- .|.|..=.-.|||..|.+. ..|||+++-=
T Consensus 61 ~eea~~~i~~-mv~k~~pDv~iaGPa--FNagrYG~acg~va~aV~e-~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLE-MIKGANPDIFIAGPA--FNAGRYGMAAGAITKAVQD-ELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHH-HHHhcCCCEEEEcCc--cCCccHHHHHHHHHHHHHH-hhCCCeEEEe
Confidence 4444333333 233468999999984 5888877778999888776 5799999764
No 38
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=56.98 E-value=60 Score=28.19 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=25.5
Q ss_pred EecCCCCCCccHHHHHHHHHhcCCceEEEEecCC
Q 028146 19 VTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 19 lTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
.+++-|=...-+..|++.|.+.| |+|.|+....
T Consensus 7 ~~p~~gG~~~~~~~la~~L~~~G-~~v~v~~~~~ 39 (371)
T cd04962 7 CYPTYGGSGVVATELGKALARRG-HEVHFITSSR 39 (371)
T ss_pred EEeCCCCccchHHHHHHHHHhcC-CceEEEecCC
Confidence 34455555667899999999999 8999998754
No 39
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=54.29 E-value=20 Score=30.59 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCCCCCccHHHHHHHHHhcCCceEEEEecCCCC
Q 028146 22 DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 22 DDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
+||.+-.=+..-++.|.+.| ++|.++.|....
T Consensus 17 ~~G~~~~E~~~p~~~l~~aG-~~V~~as~~g~~ 48 (221)
T cd03141 17 PTGLWLEELAHPYDVFTEAG-YEVDFASPKGGK 48 (221)
T ss_pred cCccCHHHHHHHHHHHHHCC-CeEEEECCCCCC
Confidence 45555555666788999999 799999997654
No 40
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=51.44 E-value=9.9 Score=32.13 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=19.9
Q ss_pred ccccchh-hHHHHHHHHH-cCCCE
Q 028146 118 YHVVYSG-TVAGAREAFF-HGVPS 139 (213)
Q Consensus 118 ~dv~ySG-TVgAA~ea~~-~GiPa 139 (213)
.||+|+| |+=||+.|.+ .|-|+
T Consensus 103 DDVLytGRTIRAAldal~d~GRPa 126 (179)
T COG2065 103 DDVLYTGRTIRAALDALVDYGRPA 126 (179)
T ss_pred eeecccCccHHHHHHHHHhcCCcc
Confidence 5799999 9999999998 88886
No 41
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=50.79 E-value=26 Score=26.38 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=26.5
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCC
Q 028146 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 17 ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
.+|+|.+. +-+..+++.|++.| +||.++++..+.
T Consensus 3 l~i~~~~~---~~~~~~~~~L~~~g-~~V~ii~~~~~~ 36 (139)
T PF13477_consen 3 LLIGNTPS---TFIYNLAKELKKRG-YDVHIITPRNDY 36 (139)
T ss_pred EEEecCcH---HHHHHHHHHHHHCC-CEEEEEEcCCCc
Confidence 46778774 45788999999988 799999994443
No 42
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.60 E-value=12 Score=34.78 Aligned_cols=21 Identities=43% Similarity=0.545 Sum_probs=17.8
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q 028146 122 YSGTVAGAREAFFHGVPSVSISY 144 (213)
Q Consensus 122 ySGTVgAA~ea~~~GiPaIAvS~ 144 (213)
-|||+ |+||++.|+|||.++-
T Consensus 259 ~ggTM--arEaAlLGtpaIs~~p 279 (346)
T COG1817 259 AGGTM--AREAALLGTPAISCYP 279 (346)
T ss_pred CCchH--HHHHHHhCCceEEecC
Confidence 36886 7899999999998874
No 43
>PRK15415 propanediol utilization protein PduB; Provisional
Probab=48.95 E-value=18 Score=32.55 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=44.1
Q ss_pred EeCCChHHHHHHhhhccCCCCCCcEE-EecCCCCCcCccc--ccchhhHHHHHHHHHc
Q 028146 81 AVSGTPADCASLGVSQALFPSVPDLV-ISGINMGSNCGYH--VVYSGTVAGAREAFFH 135 (213)
Q Consensus 81 ~v~GTPaDcV~~al~~~l~~~~PDLV-vSGIN~G~N~g~d--v~ySGTVgAA~ea~~~ 135 (213)
.+.+.|+-.-..+.+..+..-..+|+ +..|..|.+.+-- ++.+|.++|-++|+..
T Consensus 185 iie~~p~a~gi~aaD~AlKaA~Velv~~~~p~~gt~~~Gk~~~~itGDvsAV~~Av~A 242 (266)
T PRK15415 185 IIVGAPAGIGVVMADTALKSANVDVVAYSSPAHGTSFSNEVILTISGDSGAVRQAVIA 242 (266)
T ss_pred EEEcCcHHHHHHHHHHHHhhcCeeEEEEEcCccccccCCeEEEEEEecHHHHHHHHHH
Confidence 47899999888888865544578988 7889999999854 6789999998888743
No 44
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=48.59 E-value=32 Score=26.73 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=22.2
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCceEEEEecC
Q 028146 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (213)
Q Consensus 17 ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~ 51 (213)
||+|.|- .+..+.+.|++.| .+|.++++.
T Consensus 104 vLvSgD~-----Df~~~i~~lr~~G-~~V~v~~~~ 132 (149)
T cd06167 104 VLVSGDS-----DFVPLVERLRELG-KRVIVVGFE 132 (149)
T ss_pred EEEECCc-----cHHHHHHHHHHcC-CEEEEEccC
Confidence 7888754 5556677777788 699999997
No 45
>PRK09932 glycerate kinase II; Provisional
Probab=48.43 E-value=1.4e+02 Score=28.28 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=29.4
Q ss_pred CCCcEEEecCCCCCcCcccccchh--hHHHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSG--TVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySG--TVgAA~ea~~~GiPaIAvS~~ 145 (213)
..-||||.| .|.=-. -+..| ..+-|..|..+|+|.|+++-.
T Consensus 283 ~~ADlVITG--EG~~D~--Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 283 QGAALVITG--EGRIDS--QTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred ccCCEEEEC--CCcccc--cccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 468999998 332111 23334 569999999999999999864
No 46
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=47.87 E-value=24 Score=32.91 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=37.3
Q ss_pred CChHHHHHHhhhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEE
Q 028146 84 GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI 142 (213)
Q Consensus 84 GTPaDcV~~al~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAv 142 (213)
--+=.+..-=+. .+-..+||+||.||- .|.|..=.-.|+|+.|.+-- .|||+++-
T Consensus 63 en~eea~~~i~~-mv~~~~pD~viaGPa--FnagrYG~acg~v~~aV~e~-~~IP~vta 117 (349)
T PF07355_consen 63 ENKEEALKKILE-MVKKLKPDVVIAGPA--FNAGRYGVACGEVAKAVQEK-LGIPVVTA 117 (349)
T ss_pred hCHHHHHHHHHH-HHHhcCCCEEEEcCC--cCCchHHHHHHHHHHHHHHh-hCCCEEEE
Confidence 444445444443 243458999999984 57887766778887776543 69999954
No 47
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=47.75 E-value=24 Score=27.39 Aligned_cols=32 Identities=31% Similarity=0.261 Sum_probs=23.0
Q ss_pred EEEecCCCCCC--ccHHHHHHHHHhcCCceEEEEe
Q 028146 17 IMVTNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 17 ILlTNDDGi~s--~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
+-=.+|||-.+ .|...| +.|+..+..+|.||.
T Consensus 50 ~~~~~DDGEp~gtAG~piL-~~L~~~~l~nv~VVV 83 (110)
T PF01205_consen 50 IEGFSDDGEPGGTAGKPIL-EVLEHNGLTNVLVVV 83 (110)
T ss_dssp EEEEE-TTSSTTSSCHHHH-HHHHHCTB-SEEEEE
T ss_pred eecccCCCCCCCCccHHHH-HHHHhCCcCCEEEEE
Confidence 44568999998 998887 788887777876553
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=47.56 E-value=30 Score=29.22 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=23.0
Q ss_pred CCccHHHHHHHHHhcCCceEEEEecCCCC
Q 028146 26 DAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 26 ~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
.+--++.|+++|.+.| |+|.++.|....
T Consensus 16 ~~~~~~~l~~~L~~~g-~~v~v~~~~~~~ 43 (374)
T cd03817 16 VATSIRRLAEELEKRG-HEVYVVAPSYPG 43 (374)
T ss_pred eehHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 4556889999999998 899999986643
No 49
>PRK10342 glycerate kinase I; Provisional
Probab=46.42 E-value=1.5e+02 Score=27.95 Aligned_cols=43 Identities=21% Similarity=0.055 Sum_probs=29.7
Q ss_pred CCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
..-||||.|= |.=-.....=-..++-|..|..+|+|.||++-.
T Consensus 283 ~~ADLVITGE--G~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 283 HDCTLVITGE--GRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred ccCCEEEECC--CcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 4689999983 321112222244669999999999999999764
No 50
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=45.40 E-value=1.1e+02 Score=27.93 Aligned_cols=51 Identities=24% Similarity=0.154 Sum_probs=33.4
Q ss_pred ChHHHHHHhhh---ccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEee
Q 028146 85 TPADCASLGVS---QALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 85 TPaDcV~~al~---~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
+.++.+..++. ..+...+||+|++-=.. .=|+++|+.|..+|||.+-+-..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~----------~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 73 GMAKSMGLTIIGFSDAFERLKPDLVVVLGDR----------FEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCEEEEeCCc----------hHHHHHHHHHHHhCCcEEEEECC
Confidence 44555544443 23334689999863111 02579999999999999988654
No 51
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.15 E-value=25 Score=20.29 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHH
Q 028146 13 HKPTIMVTNDDGIDAPGLRSLVRVLV 38 (213)
Q Consensus 13 ~~~~ILlTNDDGi~s~Gi~aL~~aL~ 38 (213)
..++.|==+|..+..+|.++|.++|+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 45677777899999999999999986
No 52
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=42.39 E-value=39 Score=30.29 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHhcCCceEEEEecCC
Q 028146 28 PGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
--+..|+++|.+.| |+|+|+++..
T Consensus 24 ~~v~~la~~L~~~G-~~V~v~~~~~ 47 (405)
T TIGR03449 24 VYILETATELARRG-IEVDIFTRAT 47 (405)
T ss_pred ehHHHHHHHHhhCC-CEEEEEeccc
Confidence 34789999999999 8999999864
No 53
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=39.91 E-value=43 Score=30.25 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.1
Q ss_pred CccHHHHHHHHHhcCCceEEEEecCC
Q 028146 27 APGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 27 s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
+.-+..|.++|.+.| |+|+|+.|..
T Consensus 17 e~~~~~la~~L~~~G-~~V~v~~~~~ 41 (398)
T cd03796 17 ETHIYQLSQCLIKRG-HKVVVITHAY 41 (398)
T ss_pred HHHHHHHHHHHHHcC-CeeEEEeccC
Confidence 445888999999999 8999999864
No 54
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=39.44 E-value=2.2e+02 Score=23.58 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHhcCCceEEEEecCCCCCcC
Q 028146 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAV 57 (213)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~ 57 (213)
.-++.+.++|.+.| ++|+++.+.......
T Consensus 18 ~~~~~~~~~l~~~g-~~v~v~~~~~~~~~~ 46 (377)
T cd03798 18 IFVKELARALAKRG-VEVTVLAPGPWGPKL 46 (377)
T ss_pred HHHHHHHHHHHHCC-CceEEEecCCCCCCc
Confidence 44788999999888 799999987665443
No 55
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=39.20 E-value=1.1e+02 Score=23.45 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=28.9
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCC
Q 028146 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 17 ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
||+. ||.....+..+++.|+..| .+|.+++|..+.
T Consensus 6 ill~--~g~~~~e~~~~~~~~~~a~-~~v~vvs~~~~~ 40 (142)
T cd03132 6 ILVA--DGVDAAELSALKAALKAAG-ANVKVVAPTLGG 40 (142)
T ss_pred EEEc--CCcCHHHHHHHHHHHHHCC-CEEEEEecCcCc
Confidence 5554 5788889999999999988 699999997753
No 56
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=39.19 E-value=52 Score=28.30 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=28.2
Q ss_pred EEEec---CCCCCCccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 17 IMVTN---DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 17 ILlTN---DDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
||+|| =||++-.-+..-+++|++.| ++|.+++|...
T Consensus 6 ills~~~~~dG~e~~E~~~P~~~L~~aG-~~V~~aSp~~~ 44 (217)
T PRK11780 6 VILSGCGVYDGSEIHEAVLTLLALDRAG-AEAVCFAPDIP 44 (217)
T ss_pred EEEccCCCCCCEehhHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 55653 14777777778899999999 79999999764
No 57
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=39.03 E-value=30 Score=26.38 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=19.4
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCccc
Q 028146 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHS 60 (213)
Q Consensus 17 ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~s 60 (213)
||+|.| .-+..+.+.|++.| .+|++++. ++..+++
T Consensus 100 vLvSgD-----~Df~~~v~~l~~~g-~~V~v~~~---~~~~s~~ 134 (146)
T PF01936_consen 100 VLVSGD-----SDFAPLVRKLRERG-KRVIVVGA---EDSASEA 134 (146)
T ss_dssp EEE--------GGGHHHHHHHHHH---EEEEEE----GGGS-HH
T ss_pred EEEECc-----HHHHHHHHHHHHcC-CEEEEEEe---CCCCCHH
Confidence 788887 23666777777888 58999984 3445544
No 58
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=38.59 E-value=29 Score=33.56 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCCeEEEe-c-CCCCCCccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 13 HKPTIMVT-N-DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 13 ~~~~ILlT-N-DDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
++-|||.. . ..+=+--.++.++++|.+.| |+|+|+.|...
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rG-H~VTvi~p~~~ 60 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERG-HNVTVIKPTLR 60 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcC-CeEEEEecccc
Confidence 45568865 3 34445678999999999999 89999999753
No 59
>PRK11249 katE hydroperoxidase II; Provisional
Probab=38.05 E-value=1.2e+02 Score=31.28 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=33.4
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCC
Q 028146 13 HKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 13 ~~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
++++|.|-=.||.+...+..+.++|++.| .+|.+|+|..
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AG-a~V~VVSp~~ 634 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKG-VHAKLLYPRM 634 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCC-CEEEEEECCC
Confidence 45666666678999999999999999999 6999999965
No 60
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=37.89 E-value=33 Score=31.70 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCC
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
+..|.++|.+.| |+|.|+.|...+
T Consensus 22 ~~~L~~aL~~~G-~~V~Vi~p~y~~ 45 (476)
T cd03791 22 VGALPKALAKLG-HDVRVIMPKYGR 45 (476)
T ss_pred HHHHHHHHHHCC-CeEEEEecCCcc
Confidence 578899999999 899999997664
No 61
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=37.87 E-value=12 Score=26.26 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=13.5
Q ss_pred EEecCCCCCC-ccHHHHHHHHHh
Q 028146 18 MVTNDDGIDA-PGLRSLVRVLVS 39 (213)
Q Consensus 18 LlTNDDGi~s-~Gi~aL~~aL~~ 39 (213)
||||+||--| -+.--+.-+|.-
T Consensus 3 LiTN~dGrLSTT~~iQffg~lv~ 25 (60)
T PF10841_consen 3 LITNADGRLSTTAFIQFFGALVM 25 (60)
T ss_pred cccCCCCcEehHHHHHHHHHHHH
Confidence 8999999876 333334444443
No 62
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=37.76 E-value=59 Score=27.38 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=21.8
Q ss_pred CccHHHHHHHHHhcCCceEEEEecCCCC
Q 028146 27 APGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 27 s~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
..-++.|+++|.+.| |+|.++.+....
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~~~~~~~~~ 43 (394)
T cd03794 17 AFRTTELAEELVKRG-HEVTVITGSPNY 43 (394)
T ss_pred ceeHHHHHHHHHhCC-ceEEEEecCCCc
Confidence 345888999999998 799999986543
No 63
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=37.66 E-value=54 Score=23.51 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=29.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEe
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
..+.|+|+.|+++---..|++..++.. .+|++..
T Consensus 4 ~~~~i~~~~GlHaRpa~~lv~~a~~~~-~~i~i~~ 37 (84)
T PF00381_consen 4 REVTIKNPNGLHARPAAELVQIASKFD-SDITIRK 37 (84)
T ss_dssp EEEEEESTTSSSHHHHHHHHHHHHTSS-SEEEEEE
T ss_pred EEEEEcCCCcccHHHHHHHHHHHhhCC-CEEEEEe
Confidence 358899999999999999999999876 5888774
No 64
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=37.59 E-value=38 Score=27.37 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCCCccHHHHHHHHHhcC
Q 028146 24 GIDAPGLRSLVRVLVSTN 41 (213)
Q Consensus 24 Gi~s~Gi~aL~~aL~~~g 41 (213)
.+.+||...+++.|++.|
T Consensus 26 ~~~~~~~~~a~~~l~~~G 43 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNG 43 (157)
T ss_pred CcCCHHHHHHHHHHHHcC
Confidence 488999999999998765
No 65
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=36.70 E-value=57 Score=24.21 Aligned_cols=44 Identities=30% Similarity=0.191 Sum_probs=30.0
Q ss_pred cccccCCCCCCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCC
Q 028146 5 GIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 5 ~~~~~~~~~~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
||++....+ ..+|||..+..+-++.|...|.-.. ..|+-+-|..
T Consensus 2 DIvavG~~s---Fy~TNDhyf~~~~l~~lE~~l~~~~-~~Vvyyd~~~ 45 (86)
T PF01731_consen 2 DIVAVGPDS---FYVTNDHYFTDPFLRLLETYLGLPW-GNVVYYDGKE 45 (86)
T ss_pred CEEEECcCc---EEEECchhhCcHHHHHHHHHhcCCC-ceEEEEeCCE
Confidence 455553333 8999999999888887776665322 3777777754
No 66
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=36.26 E-value=36 Score=29.36 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCceEEEEecCC
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
...|.++|++.| |+|.|+.|.-
T Consensus 22 ~~~L~kaL~~~G-~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQG-HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT--EEEEEEE-T
T ss_pred HHHHHHHHHhcC-CeEEEEEccc
Confidence 567899999999 8999999976
No 67
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=36.11 E-value=40 Score=28.09 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=27.6
Q ss_pred EEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCC
Q 028146 18 MVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (213)
Q Consensus 18 LlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~S 55 (213)
++++-.|-...-++.|.++|.+.| |+|.++.+.....
T Consensus 4 ~i~~~~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~ 40 (359)
T cd03808 4 HIVTVDGGLYSFRLPLIKALRAAG-YEVHVVAPPGDEL 40 (359)
T ss_pred EEEecchhHHHHHHHHHHHHHhcC-CeeEEEecCCCcc
Confidence 344444555567888999998888 8999999876554
No 68
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=35.70 E-value=52 Score=30.28 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecC
Q 028146 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (213)
Q Consensus 14 ~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~ 51 (213)
+..||.++|=|.+ +=+..+++.|.+.| |+|+|+++.
T Consensus 5 ~~~~~~~~~~~~~-~R~~~~a~~L~~~G-~~V~ii~~~ 40 (415)
T cd03816 5 RVCVLVLGDIGRS-PRMQYHALSLAKHG-WKVDLVGYL 40 (415)
T ss_pred EEEEEEecccCCC-HHHHHHHHHHHhcC-ceEEEEEec
Confidence 4568888886555 45677899999999 899999774
No 69
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=35.67 E-value=60 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=23.6
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcC-CceEEEEecCC
Q 028146 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTN-RYTVQVCAPDS 52 (213)
Q Consensus 14 ~~~ILlTNDDGi~s~Gi~aL~~aL~~~g-~~~V~VVAP~~ 52 (213)
.|+||||+-. .++ .+++.|++.| .++|+++-+..
T Consensus 1 ~~~vLv~g~~----~~~-~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 1 MMNILVTSAG----RRV-QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred CceEEEecCC----ccH-HHHHHHHHhccCCEEEEECCCC
Confidence 3789999873 334 7788888774 25777776653
No 70
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=35.44 E-value=45 Score=28.86 Aligned_cols=32 Identities=38% Similarity=0.398 Sum_probs=23.7
Q ss_pred CCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeec
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~ 146 (213)
.+||||||=... - ++..|...|+|+|.++...
T Consensus 93 ~~pDlVIsD~~~-----------~---~~~aa~~~giP~i~i~~~~ 124 (318)
T PF13528_consen 93 FRPDLVISDFYP-----------L---AALAARRAGIPVIVISNQY 124 (318)
T ss_pred cCCCEEEEcChH-----------H---HHHHHHhcCCCEEEEEehH
Confidence 589999985322 1 4466677999999999754
No 71
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=35.19 E-value=65 Score=27.41 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=28.8
Q ss_pred CCCCCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEE
Q 028146 11 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVC 48 (213)
Q Consensus 11 ~~~~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VV 48 (213)
...+..|.||=|||........+.+.|++.+. ..+..
T Consensus 33 ~~~~k~VaLTFDDGp~~~~t~~lL~~L~~~~v-kATFF 69 (224)
T TIGR02884 33 DTSKKVIYLTFDNGYENGYTPKILDVLKEKKV-PAAFF 69 (224)
T ss_pred CCCCCEEEEEEECCCCccchHHHHHHHHHcCC-CeEEE
Confidence 44566799999999988778889999998874 44433
No 72
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=35.05 E-value=34 Score=27.91 Aligned_cols=24 Identities=46% Similarity=0.581 Sum_probs=20.4
Q ss_pred chhhHHHHHHHHHcCCCEEEEEee
Q 028146 122 YSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 122 ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
-|+-+-++.-|..+|+|+|+++.+
T Consensus 262 Is~RlH~~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 262 ISMRLHGAILALSLGVPVIAISYD 285 (286)
T ss_pred EecCCHHHHHHHHcCCCEEEEecC
Confidence 456788999999999999999863
No 73
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=34.96 E-value=1.1e+02 Score=28.82 Aligned_cols=62 Identities=31% Similarity=0.280 Sum_probs=36.3
Q ss_pred EEeCCChHHHHHHhhhccCCCCCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEee
Q 028146 80 YAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 80 ~~v~GTPaDcV~~al~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
..++|...=.=.++|...+ ..-||||.| .|..-.....=....+-|..|..+|+|.|||.-.
T Consensus 264 ~l~sG~~~v~~~~~l~~~l--~~aDlVITG--EG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~G~ 325 (377)
T PF02595_consen 264 ELVSGIDLVLELLGLEERL--EDADLVITG--EGRLDAQTLAGKVPGGVARLAKKHGVPVIAVAGS 325 (377)
T ss_dssp EEEEHHHHHHHHTTHHHHC--CC-SEEEE----CECSTTTTTTCHHHHHHCCHCCTT--EEEEECE
T ss_pred EECchHHHHHHhcCHHHHh--cCCCEEEEC--ccccccccCCCcHHHHHHHHHHHcCCcEEEEeCC
Confidence 3466666666566666533 478999998 4442222222234557777788899999999865
No 74
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=34.50 E-value=1.8e+02 Score=21.14 Aligned_cols=95 Identities=18% Similarity=0.056 Sum_probs=50.0
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCcee--eee----c----ccCCc--ee-EEe
Q 028146 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPIS--ARP----A----DFDGV--TA-YAV 82 (213)
Q Consensus 16 ~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~--v~~----~----~~~g~--~~-~~v 82 (213)
+||+.-|..-.+..+...+..|......+++++--....+... .....-.. .++ . ...|. .. ..+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS--PSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRI 78 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC--cchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEe
Confidence 5899988887777777777777654325665553322211111 00000000 000 0 00121 11 234
Q ss_pred CCChHHHHHHhhhccCCCCCCcEEEecCCCCCcC
Q 028146 83 SGTPADCASLGVSQALFPSVPDLVISGINMGSNC 116 (213)
Q Consensus 83 ~GTPaDcV~~al~~~l~~~~PDLVvSGIN~G~N~ 116 (213)
+|.|++.+.-... ....||||-|-......
T Consensus 79 ~~~~~~~I~~~a~----~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 79 DHDIASGILRTAK----ERQADLIIMGWHGSTSL 108 (132)
T ss_pred cCCHHHHHHHHHH----hcCCCEEEEecCCCCCc
Confidence 7899998765544 23799999998765544
No 75
>PLN00016 RNA-binding protein; Provisional
Probab=34.42 E-value=59 Score=29.47 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=27.4
Q ss_pred CCeEEEecCCCCCCcc-HHHHHHHHHhcCCceEEEEecCC
Q 028146 14 KPTIMVTNDDGIDAPG-LRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 14 ~~~ILlTNDDGi~s~G-i~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
.++|||||-+|=.+-. =+.|++.|.+.| |+|+++.-..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCC
Confidence 4789999888765432 245677888888 7999887543
No 76
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=33.37 E-value=1.9e+02 Score=24.74 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCCEEEEEeecC-CCCCCCccHH----HHHHHHHHHHHHHHHHH
Q 028146 127 AGAREAFFHGVPSVSISYDWV-GGKSNVNDYT----LAAEACLPIINAILAEI 174 (213)
Q Consensus 127 gAA~ea~~~GiPaIAvS~~~~-~~~~~~~~~~----~aa~~~~~li~~l~~~~ 174 (213)
+.|.-|..+|+|.+++=.-++ -+.....+|+ .+++.+.+++.++++++
T Consensus 175 Ava~v~~~~~vpfl~iR~ISD~a~~~~~~~~~~~~~~aa~~~~~~~~~~l~~~ 227 (233)
T PRK14697 175 AIGHVAYINEVPFLVIRCISDSADDEAQISYDDFAKTAANYCSEIIVEMLKNI 227 (233)
T ss_pred HHHHHHHHcCCCEEEEEEeccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556679999999843221 1111123444 66666666766666543
No 77
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.82 E-value=1.4e+02 Score=26.85 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCCcEEEecCCCCCcCcccccchhhH-HHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTV-gAA~ea~~~GiPaIAvS~~ 145 (213)
..+||||+ +|-| ||+ .||+.....++|-+.|.++
T Consensus 63 ~~~dlvi~-------lGGD----GT~L~aa~~~~~~~~PilGIN~G 97 (292)
T PRK01911 63 GSADMVIS-------IGGD----GTFLRTATYVGNSNIPILGINTG 97 (292)
T ss_pred cCCCEEEE-------ECCc----HHHHHHHHHhcCCCCCEEEEecC
Confidence 36899998 7777 996 8888888889999999875
No 78
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=32.54 E-value=58 Score=28.54 Aligned_cols=41 Identities=24% Similarity=0.475 Sum_probs=29.4
Q ss_pred eEEEecCCCCCC-ccHHHHHHHHHhcCCceEEEEecCCCCCcC
Q 028146 16 TIMVTNDDGIDA-PGLRSLVRVLVSTNRYTVQVCAPDSEKSAV 57 (213)
Q Consensus 16 ~ILlTNDDGi~s-~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~ 57 (213)
.++|+ |||+.. .-+++-.+++++.+-.++++..|-..++..
T Consensus 126 ~VIlV-DDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~ 167 (220)
T COG1926 126 TVILV-DDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAA 167 (220)
T ss_pred EEEEE-eCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHH
Confidence 34554 999985 336666777877776789999997766654
No 79
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=32.21 E-value=83 Score=24.84 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=23.1
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCceEEEEe
Q 028146 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 16 ~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
-||+| ||.....+...++.|++.|. ++++|+
T Consensus 107 iillT--DG~~~~~~~~~a~~lk~~gi-~i~~ig 137 (164)
T cd01482 107 VILIT--DGKSQDDVELPARVLRNLGV-NVFAVG 137 (164)
T ss_pred EEEEc--CCCCCchHHHHHHHHHHCCC-EEEEEe
Confidence 36666 78777777788888988884 777775
No 80
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=31.81 E-value=71 Score=29.88 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEE
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (213)
++.|+||.|-..=.--|.-+.-.||...|+-|-.+|||-+.+.
T Consensus 237 ~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 237 GKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVA 279 (356)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEc
Confidence 5799999999888778888889999999999999999999875
No 81
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=31.29 E-value=1.9e+02 Score=27.12 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=60.7
Q ss_pred HHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHHHHHhhhccCCCCCCcEEEecCCCCCcC
Q 028146 37 LVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNC 116 (213)
Q Consensus 37 L~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDcV~~al~~~l~~~~PDLVvSGIN~G~N~ 116 (213)
+.+.| .+..|++-++--...|+.+|. ++....|.++..+ .|...-.+ +..++.|.||.|-..=.--
T Consensus 195 a~~~g-k~f~V~v~EsRP~~qG~rlta------~eL~~~GIpvtlI----~Dsa~~~~---m~~~~Vd~VivGAD~I~~N 260 (363)
T PRK05772 195 AKALG-MSVSVIAPETRPWLQGSRLTV------YELMEEGIKVTLI----TDTAVGLV---MYKDMVNNVMVGADRILRD 260 (363)
T ss_pred HHHCC-CeEEEEECCCCccchhHHHHH------HHHHHCCCCEEEE----ehhHHHHH---HhhcCCCEEEECccEEecC
Confidence 33456 467777777666667765552 1222234443333 12222222 2124799999999887777
Q ss_pred cccccchhhHHHHHHHHHcCCCEEEEE
Q 028146 117 GYHVVYSGTVAGAREAFFHGVPSVSIS 143 (213)
Q Consensus 117 g~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (213)
|.-+.-.||..-|+-|-.+|+|-+.++
T Consensus 261 G~v~NKiGTy~lA~~Ak~~~vPfyV~a 287 (363)
T PRK05772 261 GHVFNKIGTFKEAVIAHELGIPFYALA 287 (363)
T ss_pred CCEeehhhhHHHHHHHHHhCCCEEEEc
Confidence 777788999999999999999999885
No 82
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=31.04 E-value=78 Score=26.61 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=24.0
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCceEEEEe
Q 028146 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 16 ~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
-||+| ||.....+...++.|++.| -.|++|+
T Consensus 112 villT--DG~s~~~~~~~a~~lk~~g-v~i~~Vg 142 (224)
T cd01475 112 GIVVT--DGRPQDDVSEVAAKARALG-IEMFAVG 142 (224)
T ss_pred EEEEc--CCCCcccHHHHHHHHHHCC-cEEEEEe
Confidence 36776 7877777888899999888 4777775
No 83
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=31.02 E-value=73 Score=27.89 Aligned_cols=102 Identities=21% Similarity=0.185 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCC-Cce-------eeeecc--------------------cCCcee
Q 028146 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWR-HPI-------SARPAD--------------------FDGVTA 79 (213)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~-~pl-------~v~~~~--------------------~~g~~~ 79 (213)
++|.++=+++|+. +|-|+-+.+-.-|.||+-|-- ..+ .+..++ ..|...
T Consensus 46 ~~i~AaDeA~KAA---nVevv~a~~~~gGaghg~~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~~~f~~~n~~g~~~ 122 (217)
T PRK15405 46 VTYTALDEATKQA---MVEVVYARSFYAGAAHASTPLAGEVIGILAGPNPAEVRAGLDAMVAFIENGAAFQSANDDDSTA 122 (217)
T ss_pred hHHhHHHHHHhhc---ceEEEEEEeeccccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhhhceEeeCCCCCEE
Confidence 8999988888874 788899999988999876321 111 000000 011111
Q ss_pred ------------------------E-EeCCChHHHHHHhhhccCCCCCCcEE-EecCCCCCcCcccccchhhHHHHHHHH
Q 028146 80 ------------------------Y-AVSGTPADCASLGVSQALFPSVPDLV-ISGINMGSNCGYHVVYSGTVAGAREAF 133 (213)
Q Consensus 80 ------------------------~-~v~GTPaDcV~~al~~~l~~~~PDLV-vSGIN~G~N~g~dv~ySGTVgAA~ea~ 133 (213)
| ++=|-|+- -.++++..+..-..++| ..||..|.|.+. .+.||+-+|.++|+
T Consensus 123 ~~a~~~aRag~~l~k~~g~~~G~a~~~li~~P~~-~~~~~D~AlKaA~V~~~~~~~P~~~t~f~~-~~ltG~~~A~r~A~ 200 (217)
T PRK15405 123 FFAHVVSRTGSYLSKTAGIAEGEPLAYLIAPPLE-AMYGIDAALKAADVQLVTFVGPPSETNFGG-ALLTGSQSACKAAC 200 (217)
T ss_pred EEEEEcccHHHHHHHHcCCCCCceeEEEecCcHH-HHHHHHHHHhhcCceEEEEeCCCCCceecC-eeEEeCHHHHHHHH
Confidence 2 24477744 44555544544568885 899999988887 77899999888876
Q ss_pred H
Q 028146 134 F 134 (213)
Q Consensus 134 ~ 134 (213)
.
T Consensus 201 ~ 201 (217)
T PRK15405 201 N 201 (217)
T ss_pred H
Confidence 4
No 84
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=30.46 E-value=2.4e+02 Score=24.36 Aligned_cols=49 Identities=16% Similarity=0.044 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCEEEEEeecC-CCCCCCccH----HHHHHHHHHHHHHHHHHH
Q 028146 126 VAGAREAFFHGVPSVSISYDWV-GGKSNVNDY----TLAAEACLPIINAILAEI 174 (213)
Q Consensus 126 VgAA~ea~~~GiPaIAvS~~~~-~~~~~~~~~----~~aa~~~~~li~~l~~~~ 174 (213)
-+.|.-+...|+|.+++=.-++ -+.....+| ..|++.+.+++.++++++
T Consensus 175 aAvA~vc~~~~vP~l~IR~ISD~a~~~~~~~~~~f~~~aa~~sa~~~~~~l~~~ 228 (236)
T PRK06714 175 AAFAYVCQINKKPFLCLKAASDQANDKTKEEQKIFKMLACERACEHLIAFLRVY 228 (236)
T ss_pred HHHHHHHHHhCCCEEEEEEeccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555667789999998743221 111122334 467777777777777654
No 85
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=29.84 E-value=59 Score=24.13 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCCCeEEEecCCCCCCcc-HHHHHHHHHhcCCceEEE
Q 028146 12 DHKPTIMVTNDDGIDAPG-LRSLVRVLVSTNRYTVQV 47 (213)
Q Consensus 12 ~~~~~ILlTNDDGi~s~G-i~aL~~aL~~~g~~~V~V 47 (213)
.+..+|||. ||-+.+-+ ++...+.|++.| .+++-
T Consensus 86 ~~gk~vliV-DDvi~tG~Tl~~~~~~L~~~g-~~~v~ 120 (125)
T PF00156_consen 86 IKGKRVLIV-DDVIDTGGTLKEAIELLKEAG-AKVVG 120 (125)
T ss_dssp GTTSEEEEE-EEEESSSHHHHHHHHHHHHTT-BSEEE
T ss_pred ccceeEEEE-eeeEcccHHHHHHHHHHHhCC-CcEEE
Confidence 356789998 88888743 788899999988 45443
No 86
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=29.80 E-value=91 Score=23.52 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=34.4
Q ss_pred CCCCeEEEecCC------CC-CCccHHHHHHHHHhcCCceEEEEecCCCCCcCcc
Q 028146 12 DHKPTIMVTNDD------GI-DAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSH 59 (213)
Q Consensus 12 ~~~~~ILlTNDD------Gi-~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~ 59 (213)
..++||.||=-- |- ...-++.|.++|.+.+ .||++.+++.+..+.++
T Consensus 38 ~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ld-vEvV~a~~~~~~~~lg~ 91 (97)
T PF06722_consen 38 PGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLD-VEVVVALPAAQRAELGE 91 (97)
T ss_dssp TSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSS-SEEEEEETTCCCGGCCS
T ss_pred CCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCC-cEEEEECCHHHHHhhCC
Confidence 467788887211 11 1246889999999998 79999999998877653
No 87
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=29.49 E-value=22 Score=33.34 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=21.2
Q ss_pred EEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCC
Q 028146 17 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 17 ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
||+..-.+=+.--++.+.++|.+.| |+|+++.|..
T Consensus 3 vLv~p~~~SH~~~~~~l~~~L~~rG-H~VTvl~~~~ 37 (500)
T PF00201_consen 3 VLVFPMAYSHFIFMRPLAEELAERG-HNVTVLTPSP 37 (500)
T ss_dssp ---------SHHHHHHHHHHHHHH--TTSEEEHHHH
T ss_pred EEEeCCCcCHHHHHHHHHHHHHhcC-CceEEEEeec
Confidence 4555433334456889999999999 8999999965
No 88
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=29.45 E-value=4.4e+02 Score=24.08 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeCCChHHH--------HHHhhhccCCC
Q 028146 29 GLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADC--------ASLGVSQALFP 100 (213)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~GTPaDc--------V~~al~~~l~~ 100 (213)
=+.+..+++++.+..++++|.+..+-.-.-... ...+++...+ ....-+-.|..+ ..+|+. .+-.
T Consensus 9 vv~aa~~a~~~~~~~~~iLvGd~~~I~~~l~~~--~~~i~Ii~a~----~~i~m~e~p~~alR~kk~ss~~~A~~-lVk~ 81 (322)
T TIGR00182 9 VIDGVLKYASANQDLHIILVGDKDAIEPHLDKL--PKNITIIHAQ----SVIEMTDTPVRAIRRKVNSSMQLAMN-LVKE 81 (322)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHHHhC--CCCcEEECCC----CccccCcchHHHHHhcCCCHHHHHHH-HHHC
Confidence 366777777777766888888765311000000 0112222221 111222266666 567776 3555
Q ss_pred CCCcEEEec
Q 028146 101 SVPDLVISG 109 (213)
Q Consensus 101 ~~PDLVvSG 109 (213)
++-|.+|||
T Consensus 82 G~ADa~VSg 90 (322)
T TIGR00182 82 GRADAVISA 90 (322)
T ss_pred CCCCEEEeC
Confidence 789999999
No 89
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=29.45 E-value=89 Score=27.04 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=24.1
Q ss_pred CCCCCccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 23 DGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 23 DGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
+|++-.=+-.-++.|+++| ++|.++.|...
T Consensus 21 tG~~~~El~~p~~~l~~aG-~~V~~aS~~g~ 50 (232)
T cd03148 21 TGNHPVEMLLPLYHLHAAG-FDFDVATLSGL 50 (232)
T ss_pred CCCcHHHHHHHHHHHHHCC-CEEEEEeCCCC
Confidence 5566666778899999999 79999999653
No 90
>PRK00654 glgA glycogen synthase; Provisional
Probab=29.20 E-value=57 Score=30.57 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCceEEEEecCCC
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
+..|.++|.+.| |+|.|+.|...
T Consensus 23 v~~L~~~L~~~G-~~V~v~~p~y~ 45 (466)
T PRK00654 23 VGALPKALAALG-HDVRVLLPGYP 45 (466)
T ss_pred HHHHHHHHHHCC-CcEEEEecCCc
Confidence 588999999999 89999999764
No 91
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.07 E-value=2e+02 Score=27.38 Aligned_cols=102 Identities=20% Similarity=0.147 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccCCceeEEeC-CChHHHHHHhhhccCCCCCCcEEEe
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVS-GTPADCASLGVSQALFPSVPDLVIS 108 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g~~~~~v~-GTPaDcV~~al~~~l~~~~PDLVvS 108 (213)
-...+++|.+.| .|++++= ++-+|+.++...++--+-++++.....=+ .|+.++ +.++. + ..|.|..
T Consensus 154 ~~~~v~~lv~aG-vDvI~iD-----~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a-~~l~~--a---GaD~I~v 221 (404)
T PRK06843 154 TIERVEELVKAH-VDILVID-----SAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAA-LDLIS--V---GADCLKV 221 (404)
T ss_pred HHHHHHHHHhcC-CCEEEEE-----CCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHH-HHHHH--c---CCCEEEE
Confidence 446788888888 6888872 23355544433332111122333333324 444444 44443 2 4899999
Q ss_pred cCCCCCcCccccc-chh--hHHHH---HHHH-HcCCCEEEEE
Q 028146 109 GINMGSNCGYHVV-YSG--TVAGA---REAF-FHGVPSVSIS 143 (213)
Q Consensus 109 GIN~G~N~g~dv~-ySG--TVgAA---~ea~-~~GiPaIAvS 143 (213)
|+-.|..++.-.. -.| ++.+- .+.+ ..++|.||=.
T Consensus 222 G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdG 263 (404)
T PRK06843 222 GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADG 263 (404)
T ss_pred CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeC
Confidence 9988875544322 122 33322 2222 3588888643
No 92
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=29.06 E-value=97 Score=24.08 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=21.3
Q ss_pred eEEEecCCCCCCccHHHHHHHHHh-cCCceEEEEec
Q 028146 16 TIMVTNDDGIDAPGLRSLVRVLVS-TNRYTVQVCAP 50 (213)
Q Consensus 16 ~ILlTNDDGi~s~Gi~aL~~aL~~-~g~~~V~VVAP 50 (213)
-||+| ||....+...+++.|++ .| ..|+.|+-
T Consensus 107 villT--DG~~~~~~~~~~~~l~~~~~-v~v~~vg~ 139 (163)
T cd01476 107 VVVLT--DGRSHDDPEKQARILRAVPN-IETFAVGT 139 (163)
T ss_pred EEEEC--CCCCCCchHHHHHHHhhcCC-CEEEEEEC
Confidence 36666 56666677778888887 55 45666654
No 93
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=28.99 E-value=65 Score=28.02 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=17.5
Q ss_pred chhhHHHHHHHHHcCCCEEEEEe
Q 028146 122 YSGTVAGAREAFFHGVPSVSISY 144 (213)
Q Consensus 122 ySGTVgAA~ea~~~GiPaIAvS~ 144 (213)
.||+ ...+||..+|+|.|++..
T Consensus 257 ~~g~-~~l~Ea~~~g~Pvv~~~~ 278 (348)
T TIGR01133 257 RAGA-STVAELAAAGVPAILIPY 278 (348)
T ss_pred CCCh-hHHHHHHHcCCCEEEeeC
Confidence 5673 467799999999999754
No 94
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=28.92 E-value=77 Score=27.78 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCCEEEEEee
Q 028146 127 AGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 127 gAA~ea~~~GiPaIAvS~~ 145 (213)
+-.+|++.+|+|+|.+...
T Consensus 251 ~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 251 STSWERCCLGLPSLAICLA 269 (279)
T ss_pred hHHHHHHHcCCCEEEEEec
Confidence 4589999999999999874
No 95
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=28.64 E-value=97 Score=24.89 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=29.0
Q ss_pred cccccccCCCCCCeEEEecCCCCCCccHHHHHHHHHhc--CCceEEEEecC
Q 028146 3 RRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVST--NRYTVQVCAPD 51 (213)
Q Consensus 3 ~~~~~~~~~~~~~~ILlTNDDGi~s~Gi~aL~~aL~~~--g~~~V~VVAP~ 51 (213)
|||.-.+....-+-|++.++|-........+.+.+++. | .+|+++.++
T Consensus 39 ~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g-~~vi~i~~~ 88 (151)
T cd05010 39 RHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIA-ARVIAISPE 88 (151)
T ss_pred ccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCC-CeEEEEEcC
Confidence 67755555545555666655543323344666667665 5 589999875
No 96
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=28.63 E-value=67 Score=29.10 Aligned_cols=44 Identities=23% Similarity=0.090 Sum_probs=39.0
Q ss_pred CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEee
Q 028146 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 102 ~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
+.|.||.|-..=.--|.-+.-+||-..|+-|-.+++|-+.++-.
T Consensus 188 ~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~ 231 (310)
T PRK08535 188 DVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAET 231 (310)
T ss_pred hCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEeccc
Confidence 69999999888777777788999999999999999999998643
No 97
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=28.61 E-value=77 Score=29.91 Aligned_cols=43 Identities=28% Similarity=0.250 Sum_probs=33.5
Q ss_pred CCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
..-||||.| .|++-...+.=-=++|-|..|-.+++|.||+--.
T Consensus 283 ~daDLVITG--EGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs 325 (378)
T COG1929 283 KDADLVITG--EGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGS 325 (378)
T ss_pred ccCCEEEeC--CCcccccccCCccchHHHHhhhhhCCCEEEEecc
Confidence 478999998 6766655555455679999999999999999653
No 98
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=28.16 E-value=97 Score=27.69 Aligned_cols=42 Identities=5% Similarity=0.010 Sum_probs=28.4
Q ss_pred CCCCeEEEecCCCC--CCccHHHHHHHHHhcCCceEEEEecCCCC
Q 028146 12 DHKPTIMVTNDDGI--DAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 12 ~~~~~ILlTNDDGi--~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
.+.|||||--++-- +-.-.++|.++|++.| ++|.+++|....
T Consensus 2 ~~~~rili~t~~~G~GH~~~a~al~~~l~~~g-~~~~~~~d~~~~ 45 (380)
T PRK13609 2 IKNPKVLILTAHYGNGHVQVAKTLEQTFRQKG-IKDVIVCDLFGE 45 (380)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHHhcC-CCcEEEEEhHHh
Confidence 45678887765421 1233678888888888 678888886653
No 99
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=28.11 E-value=67 Score=28.56 Aligned_cols=19 Identities=37% Similarity=0.191 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHcCCCEEEE
Q 028146 122 YSGTVAGAREAFFHGVPSVSI 142 (213)
Q Consensus 122 ySGTVgAA~ea~~~GiPaIAv 142 (213)
-||| +.+||+.+|+|+|.+
T Consensus 268 ~sG~--~~lEa~a~G~PvI~~ 286 (380)
T PRK00025 268 ASGT--VTLELALLKVPMVVG 286 (380)
T ss_pred CccH--HHHHHHHhCCCEEEE
Confidence 4786 446999999999987
No 100
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=28.04 E-value=89 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=22.7
Q ss_pred CccHHHHHHHHHhcCCceEEEEecCCCCCc
Q 028146 27 APGLRSLVRVLVSTNRYTVQVCAPDSEKSA 56 (213)
Q Consensus 27 s~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg 56 (213)
+.-++.|+++|.+.| |+|.++.+......
T Consensus 17 ~~~~~~l~~~L~~~g-~~v~i~~~~~~~~~ 45 (374)
T cd03801 17 ERHVLELARALAARG-HEVTVLTPGDGGLP 45 (374)
T ss_pred hHHHHHHHHHHHhcC-ceEEEEecCCCCCC
Confidence 345788899999888 79999999766543
No 101
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=27.82 E-value=64 Score=30.10 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCC
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
...|.++|++.| |+|.|+.|.-.+
T Consensus 23 v~~L~~aL~~~G-~~v~v~~p~y~~ 46 (473)
T TIGR02095 23 VGALPKALAALG-HDVRVLLPAYGC 46 (473)
T ss_pred HHHHHHHHHHcC-CeEEEEecCCcC
Confidence 578999999999 899999997764
No 102
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=27.68 E-value=1.1e+02 Score=25.13 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCCeEEEecCCCCCCcc-HHHHHHHHHhcCCceE
Q 028146 13 HKPTIMVTNDDGIDAPG-LRSLVRVLVSTNRYTV 45 (213)
Q Consensus 13 ~~~~ILlTNDDGi~s~G-i~aL~~aL~~~g~~~V 45 (213)
.+.+|||. ||.+.+-+ ++++.+.|++.| .++
T Consensus 119 ~gk~VLIV-DDiitTG~Tl~aa~~~L~~~G-A~~ 150 (178)
T PRK07322 119 KGKRVAIV-DDVVSTGGTLTALERLVERAG-GQV 150 (178)
T ss_pred CCCEEEEE-eccccccHHHHHHHHHHHHcC-CEE
Confidence 45678888 99998733 888999999988 453
No 103
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=27.68 E-value=1.4e+02 Score=26.98 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=32.7
Q ss_pred CccccccccCCCCCCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEecCCCC
Q 028146 1 MERRGIAIVNSDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 1 ~~~~~~~~~~~~~~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
|.|.|--++. ++++|||.. -| ..-+.+.+++++.| ++|+++.+..+.
T Consensus 1 ~~~~~~~~~~--~~~~ilIiG-~g---~~~~~~~~a~~~~G-~~v~~~~~~~~~ 47 (395)
T PRK09288 1 MTRLGTPLSP--SATRVMLLG-SG---ELGKEVAIEAQRLG-VEVIAVDRYANA 47 (395)
T ss_pred CccccCCCCC--CCCEEEEEC-CC---HHHHHHHHHHHHCC-CEEEEEeCCCCC
Confidence 5566666664 667899984 33 23456777888888 699999876543
No 104
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=27.62 E-value=56 Score=28.50 Aligned_cols=45 Identities=24% Similarity=0.124 Sum_probs=35.6
Q ss_pred CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeec
Q 028146 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (213)
Q Consensus 102 ~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~ 146 (213)
+.|.||.|--.=..-|.-+.-.||...|+-|-.+++|.+.++-.+
T Consensus 176 ~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 176 DVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp TESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GG
T ss_pred hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccc
Confidence 389999998877777877888999999999999999999998654
No 105
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.73 E-value=1.8e+02 Score=26.30 Aligned_cols=34 Identities=35% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCCcEEEecCCCCCcCcccccchhhH-HHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTV-gAA~ea~~~GiPaIAvS~~ 145 (213)
..+|+||+ +|-| ||+ .||+.....++|-+.|..+
T Consensus 67 ~~~D~vi~-------lGGD----GT~L~aa~~~~~~~~PilGIN~G 101 (296)
T PRK04539 67 QYCDLVAV-------LGGD----GTFLSVAREIAPRAVPIIGINQG 101 (296)
T ss_pred cCCCEEEE-------ECCc----HHHHHHHHHhcccCCCEEEEecC
Confidence 36899988 6777 888 7777777789999999875
No 106
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=26.59 E-value=82 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCCc
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSEKSA 56 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~Sg 56 (213)
++.|+++|.+.| |+|+|+.+......
T Consensus 21 ~~~l~~~L~~~g-~~v~v~~~~~~~~~ 46 (359)
T cd03823 21 AHDLAEALAKRG-HEVAVLTAGEDPPR 46 (359)
T ss_pred HHHHHHHHHhcC-CceEEEeCCCCCCC
Confidence 677899999888 89999999776543
No 107
>PRK12342 hypothetical protein; Provisional
Probab=26.05 E-value=1.2e+02 Score=26.86 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=24.8
Q ss_pred CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEe
Q 028146 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (213)
Q Consensus 102 ~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (213)
.||||+.|-- .. =.++|-||+.. |.+.|+|.|..-.
T Consensus 109 ~~DLVl~G~~-----s~-D~~tgqvg~~l-A~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEG-----SG-DLYAQQVGLLL-GELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCC-----cc-cCCCCCHHHHH-HHHhCCCcEeeEE
Confidence 5999999921 11 24567777654 5678999887754
No 108
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.86 E-value=1.1e+02 Score=27.23 Aligned_cols=45 Identities=24% Similarity=0.098 Sum_probs=38.4
Q ss_pred CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEeec
Q 028146 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW 146 (213)
Q Consensus 102 ~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~~ 146 (213)
+.|.|+-|-..=.--|.-+.-.||-..|+.|..+++|.+.+.-.+
T Consensus 151 ~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~ 195 (253)
T PRK06372 151 NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISM 195 (253)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeecc
Confidence 689999998776666777788999999999999999999876544
No 109
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=25.59 E-value=89 Score=28.12 Aligned_cols=43 Identities=26% Similarity=0.219 Sum_probs=38.2
Q ss_pred CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEe
Q 028146 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (213)
Q Consensus 102 ~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (213)
+.|.||.|-..=.--|.-+.-.||...|+-|..+|||-+.++-
T Consensus 177 ~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~ 219 (275)
T PRK08335 177 EATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAE 219 (275)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECc
Confidence 5999999998877777778889999999999999999998854
No 110
>PRK12827 short chain dehydrogenase; Provisional
Probab=25.46 E-value=1.7e+02 Score=23.81 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=23.9
Q ss_pred CCCeEEEecCCCCCCccH-HHHHHHHHhcCCceEEEEec
Q 028146 13 HKPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAP 50 (213)
Q Consensus 13 ~~~~ILlTNDDGi~s~Gi-~aL~~aL~~~g~~~V~VVAP 50 (213)
..++||||=- +-|| +.|++.|.+.| ++|++++.
T Consensus 5 ~~~~ilItGa----sg~iG~~la~~l~~~g-~~v~~~~~ 38 (249)
T PRK12827 5 DSRRVLITGG----SGGLGRAIAVRLAADG-ADVIVLDI 38 (249)
T ss_pred CCCEEEEECC----CChHHHHHHHHHHHCC-CeEEEEcC
Confidence 4578999942 2344 57888898888 78888764
No 111
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.20 E-value=1.3e+02 Score=24.39 Aligned_cols=35 Identities=20% Similarity=0.056 Sum_probs=23.8
Q ss_pred CCCCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEec
Q 028146 12 DHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAP 50 (213)
Q Consensus 12 ~~~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP 50 (213)
...++||||--.|.- | +.|++.|.+.| ++|+++..
T Consensus 4 ~~~~~vlItGasg~i--G-~~l~~~l~~~g-~~v~~~~~ 38 (249)
T PRK12825 4 LMGRVALVTGAARGL--G-RAIALRLARAG-ADVVVHYR 38 (249)
T ss_pred CCCCEEEEeCCCchH--H-HHHHHHHHHCC-CeEEEEeC
Confidence 345689999766543 2 56777787788 68766444
No 112
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=24.92 E-value=1e+02 Score=27.34 Aligned_cols=38 Identities=5% Similarity=0.095 Sum_probs=26.9
Q ss_pred CeEEEecCCCCC----CccHHHHHHHHHhc--CCceEEEEecCCC
Q 028146 15 PTIMVTNDDGID----APGLRSLVRVLVST--NRYTVQVCAPDSE 53 (213)
Q Consensus 15 ~~ILlTNDDGi~----s~Gi~aL~~aL~~~--g~~~V~VVAP~~~ 53 (213)
|||+..++---. ..-+..|.++|.+. | ++|++++|...
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g-~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKIN-CEMFFFCRNDK 44 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcc-eeEEEEecCCC
Confidence 688888664211 23457788899888 7 79999998653
No 113
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=24.89 E-value=1.1e+02 Score=28.47 Aligned_cols=44 Identities=30% Similarity=0.200 Sum_probs=38.8
Q ss_pred CCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEe
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (213)
++.|.||.|-..=.--|.-+.-.||...|+-|-.+|+|-+.+.-
T Consensus 224 ~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~ 267 (344)
T PRK05720 224 GKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAP 267 (344)
T ss_pred cCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 47999999998877778788889999999999999999887754
No 114
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=24.73 E-value=1.3e+02 Score=25.14 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=25.0
Q ss_pred CCeEEEecCCCCCC------ccHHHHHHHHHhcCCceEEEEecCC
Q 028146 14 KPTIMVTNDDGIDA------PGLRSLVRVLVSTNRYTVQVCAPDS 52 (213)
Q Consensus 14 ~~~ILlTNDDGi~s------~Gi~aL~~aL~~~g~~~V~VVAP~~ 52 (213)
+.-||+||+|.... .-+...++.|.+.|. ++.++.-..
T Consensus 129 k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI-~i~~i~i~~ 172 (218)
T cd01458 129 KRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGI-ELELFPLSS 172 (218)
T ss_pred cEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEecCC
Confidence 33499999988742 334566777877774 677766533
No 115
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=24.68 E-value=1.1e+02 Score=29.17 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.6
Q ss_pred CCCeEEEecCCCCCC-ccHHHHHHHHHhcCCceEEEEec
Q 028146 13 HKPTIMVTNDDGIDA-PGLRSLVRVLVSTNRYTVQVCAP 50 (213)
Q Consensus 13 ~~~~ILlTNDDGi~s-~Gi~aL~~aL~~~g~~~V~VVAP 50 (213)
+..+|||. ||.+.+ .=+++.++.|++.|-.+|.+++-
T Consensus 339 ~gK~VlLV-DDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~ 376 (445)
T PRK08525 339 EGKRIVVI-DDSIVRGTTSKKIVSLLRAAGAKEIHLRIA 376 (445)
T ss_pred CCCeEEEE-ecccCcHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 46788888 999986 33889999999988666766654
No 116
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=24.39 E-value=95 Score=25.88 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=22.8
Q ss_pred cccchhhHHHHHHHHHcC-CCEEEEEeec
Q 028146 119 HVVYSGTVAGAREAFFHG-VPSVSISYDW 146 (213)
Q Consensus 119 dv~ySGTVgAA~ea~~~G-iPaIAvS~~~ 146 (213)
+-.|+|.+-.|.+..... .|.+-+|.-.
T Consensus 9 d~~~~~al~~aa~~l~~~~~p~l~l~~~~ 37 (164)
T PF11965_consen 9 DEHYNSALYRAAARLNRDHCPGLELSVFA 37 (164)
T ss_pred chhhhHHHHHHHHHHhhccCCCeEEEEEe
Confidence 345888898888888888 9999999743
No 117
>PRK11568 hypothetical protein; Provisional
Probab=24.36 E-value=96 Score=26.66 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=22.5
Q ss_pred ecCCCCCC--ccHHHHHHHHHhcCCceEEEEe
Q 028146 20 TNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 20 TNDDGi~s--~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
.||||-.+ .|...| +.|+..+..+|.||.
T Consensus 69 ~sDDGEPsGTAG~PiL-~vL~~~~l~nv~vVV 99 (204)
T PRK11568 69 FSDDGEPAGTAGKPML-AQLMGSGVGEITAVV 99 (204)
T ss_pred CCCCCCCCCCchHHHH-HHHHHCCCccEEEEE
Confidence 79999976 898776 458777777887763
No 118
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.31 E-value=2.1e+02 Score=25.98 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=26.5
Q ss_pred CCcEEEecCCCCCcCcccccchhhH-HHHHHHHHcCCCEEEEEee
Q 028146 102 VPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 102 ~PDLVvSGIN~G~N~g~dv~ySGTV-gAA~ea~~~GiPaIAvS~~ 145 (213)
.+||||+ +|-| ||+ .||+.....++|-+.|.++
T Consensus 68 ~~Dlvi~-------iGGD----GTlL~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 68 SMKFAIV-------LGGD----GTVLSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred CcCEEEE-------EeCc----HHHHHHHHHhcCCCCcEEEEeCC
Confidence 5799888 6666 888 7777777789999999865
No 119
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.20 E-value=1.6e+02 Score=25.03 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=25.4
Q ss_pred eEEEecCCCCC-Ccc----HHHHHHHHHhcCCceEEEEecCCCCC
Q 028146 16 TIMVTNDDGID-APG----LRSLVRVLVSTNRYTVQVCAPDSEKS 55 (213)
Q Consensus 16 ~ILlTNDDGi~-s~G----i~aL~~aL~~~g~~~V~VVAP~~~~S 55 (213)
|||+.++-=.. .-| ++.|+++|.+.| |+|.|+.+.....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~~ 44 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARG-IEVAVLCASPEPK 44 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 46666643222 223 556788888888 7999998866543
No 120
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=23.72 E-value=47 Score=26.76 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=23.0
Q ss_pred cCCCCCCccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 21 NDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 21 NDDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
|++.+...||....+.+++.| |++++|.|..-
T Consensus 18 ~~~~f~~~~i~~~v~~~~~rG-~~~v~v~~~~~ 49 (155)
T PF11977_consen 18 NQKFFSVRGIQIAVEYFKSRG-HEVVVVFPPNY 49 (155)
T ss_dssp TTTSEEHHHHHHHHHHHHHTT----EEEEEEGG
T ss_pred CCCCcCHHHHHHHHHHHHHcC-CCeEEEEcchh
Confidence 445577889999999999999 78888887544
No 121
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=23.41 E-value=4.3e+02 Score=22.05 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCCEEEEEeecCC-CCCCCccHH----HHHHHHHHHHHHHHH
Q 028146 126 VAGAREAFFHGVPSVSISYDWVG-GKSNVNDYT----LAAEACLPIINAILA 172 (213)
Q Consensus 126 VgAA~ea~~~GiPaIAvS~~~~~-~~~~~~~~~----~aa~~~~~li~~l~~ 172 (213)
.+-|.-|..+|+|.+++-.-++. +.....+|+ .|++.+.+++.++++
T Consensus 176 aa~a~va~~~~vp~~~ir~vSd~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (230)
T PRK05584 176 AAIAQVCHEFGVPFVVVRAISDTADDEAHVSFDEFLAVAAKYSANILKRMLE 227 (230)
T ss_pred HHHHHHHHHcCCCEEEEEEeccCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566789999998543321 111233554 455555556666554
No 122
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=23.23 E-value=1.1e+02 Score=27.24 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=25.9
Q ss_pred CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEee
Q 028146 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 102 ~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
.||||+.|- -..| .++|-||+.. |.+.|+|.+..-..
T Consensus 112 ~~DLVl~G~-----~s~D-~~tgqvg~~l-Ae~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGD-----GSSD-LYAQQVGLLV-GEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcC-----cccc-CCCCcHHHHH-HHHhCCCceeeEEE
Confidence 599999992 1222 4678888754 56789999887543
No 123
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=23.16 E-value=1.1e+02 Score=24.79 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCCCCccHHHHHHHHHhcCC
Q 028146 13 HKPTIMVTNDDGIDAPGLRSLVRVLVSTNR 42 (213)
Q Consensus 13 ~~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~ 42 (213)
+...|.||=|||+.......+.+.|++.+.
T Consensus 4 ~~k~V~LTFDDgp~~~~t~~~l~~L~~~~i 33 (191)
T TIGR02764 4 SDKKIALTFDISWGNDYTEPILDTLKEYDV 33 (191)
T ss_pred CCCEEEEEEECCCCcccHHHHHHHHHHcCC
Confidence 455699999999998788889999999874
No 124
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=22.95 E-value=1.2e+02 Score=25.55 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=25.0
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEe
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
...||..||. +-++.|.+++...|+ +|.++.
T Consensus 10 ~~lllvdDD~---~f~~~LaRa~e~RGf-~v~~a~ 40 (182)
T COG4567 10 KSLLLVDDDT---PFLRTLARAMERRGF-AVVTAE 40 (182)
T ss_pred ceeEEecCCh---HHHHHHHHHHhccCc-eeEeec
Confidence 3688888885 789999999999994 776653
No 125
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.95 E-value=1.3e+02 Score=27.82 Aligned_cols=43 Identities=28% Similarity=0.219 Sum_probs=38.2
Q ss_pred CCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEE
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS 143 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS 143 (213)
++.|.||.|-..=.--|.-+.-.||...|+-|-.+|||-+.+.
T Consensus 214 ~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a 256 (329)
T PRK06371 214 KEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAA 256 (329)
T ss_pred cCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEec
Confidence 4799999998877777777788999999999999999999885
No 126
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.75 E-value=2.6e+02 Score=25.07 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=28.2
Q ss_pred CCCcEEEecCCCCCcCcccccchhhH-HHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTV-gAA~ea~~~GiPaIAvS~~ 145 (213)
..+|+||+ +|-| ||+ .||+.....++|-+.|..+
T Consensus 63 ~~~Dlvi~-------iGGD----GT~L~aa~~~~~~~~PilGIN~G 97 (287)
T PRK14077 63 KISDFLIS-------LGGD----GTLISLCRKAAEYDKFVLGIHAG 97 (287)
T ss_pred cCCCEEEE-------ECCC----HHHHHHHHHhcCCCCcEEEEeCC
Confidence 36899998 6666 995 8888888889999999875
No 127
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=22.35 E-value=65 Score=29.65 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHcCCCEEEEE
Q 028146 123 SGTVAGAREAFFHGVPSVSIS 143 (213)
Q Consensus 123 SGTVgAA~ea~~~GiPaIAvS 143 (213)
+||+ |+||++.|+|+|.+.
T Consensus 256 ggTM--a~EAA~LGtPaIs~~ 274 (335)
T PF04007_consen 256 GGTM--AREAALLGTPAISCF 274 (335)
T ss_pred CcHH--HHHHHHhCCCEEEec
Confidence 6776 679999999999753
No 128
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=22.34 E-value=94 Score=23.82 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=18.6
Q ss_pred eEEEecCCCCCCccHHHHHHHHHhcCCceEEEEe
Q 028146 16 TIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 16 ~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
+|||+ =+|--|.|+..-++-+...- .+|..+.
T Consensus 3 ~ili~-sHG~~A~gl~~s~~~i~G~~-~~i~~i~ 34 (116)
T TIGR00824 3 AIIIS-GHGQAAIALLKSAEMIFGEQ-NNVGAVP 34 (116)
T ss_pred EEEEE-ecHHHHHHHHHHHHHHcCCc-CCeEEEE
Confidence 35554 24557788888887775332 2455553
No 129
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=22.32 E-value=1.8e+02 Score=22.76 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=26.4
Q ss_pred CCCCCCccHHHHHHHHHhcCCceEEEEecC
Q 028146 22 DDGIDAPGLRSLVRVLVSTNRYTVQVCAPD 51 (213)
Q Consensus 22 DDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~ 51 (213)
-||..-..+..+.+.|+..| ++|.+++|.
T Consensus 7 ~~gf~~~e~~~~~~~l~~a~-~~v~~vs~~ 35 (165)
T cd03134 7 ADGFEDVELTYPLYRLREAG-AEVVVAGPE 35 (165)
T ss_pred CCCchHHHHHHHHHHHHHCC-CEEEEEccC
Confidence 68899889999999999888 699999998
No 130
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=22.29 E-value=1.2e+02 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCCCCeEEEecCCCCCCccH-HHHHHHHHhcCCceEEEEecCCC
Q 028146 11 SDHKPTIMVTNDDGIDAPGL-RSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 11 ~~~~~~ILlTNDDGi~s~Gi-~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
...+.++||| =.|-|| +++++.|.+.| ++|++||-..+
T Consensus 3 ~~~~~~~lIT----GASsGIG~~~A~~lA~~g-~~liLvaR~~~ 41 (265)
T COG0300 3 PMKGKTALIT----GASSGIGAELAKQLARRG-YNLILVARRED 41 (265)
T ss_pred CCCCcEEEEE----CCCchHHHHHHHHHHHCC-CEEEEEeCcHH
Confidence 3456779999 245566 67899999999 79999997654
No 131
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=22.24 E-value=1.7e+02 Score=24.10 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=21.8
Q ss_pred CccHHHHHHHHHhcCCceEEEEecCCCCC
Q 028146 27 APGLRSLVRVLVSTNRYTVQVCAPDSEKS 55 (213)
Q Consensus 27 s~Gi~aL~~aL~~~g~~~V~VVAP~~~~S 55 (213)
..-+..|.++|.+.| |+|.++.+.....
T Consensus 15 ~~~~~~l~~~l~~~g-~~v~v~~~~~~~~ 42 (353)
T cd03811 15 ERVLLNLANGLDKRG-YDVTLVVLRDEGD 42 (353)
T ss_pred chhHHHHHHHHHhcC-ceEEEEEcCCCCc
Confidence 345788999998888 7999998866543
No 132
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=22.24 E-value=1.6e+02 Score=23.06 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=25.3
Q ss_pred CCCCCCccHHHHHHHHHhcCCceEEEEecCCC
Q 028146 22 DDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 22 DDGi~s~Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
-||.+...+...++.|...| .+|.+++|..+
T Consensus 7 ~~g~~~~e~~~~~~~l~~ag-~~v~~vs~~~~ 37 (166)
T TIGR01382 7 TDEFEDSELLYPLDRLREAG-HEVDTVSKEAG 37 (166)
T ss_pred cCCchHHHHHHHHHHHHHCC-CEEEEEecCCC
Confidence 56777778888999999988 69999987653
No 133
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=21.97 E-value=2e+02 Score=25.60 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=21.8
Q ss_pred HHHHHcCCCEEEEEeecCCCCCCCccHHHHHHHHHHHHHH
Q 028146 130 REAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINA 169 (213)
Q Consensus 130 ~ea~~~GiPaIAvS~~~~~~~~~~~~~~~aa~~~~~li~~ 169 (213)
.|+..+|+|++.+=.+... +..|..+|++. .+.+++
T Consensus 163 ~e~~~r~i~a~~ll~et~~---~~PDP~AAa~v-ve~lnk 198 (244)
T COG1938 163 NECLKRGIPALVLLAETFG---DRPDPRAAARV-VEALNK 198 (244)
T ss_pred HHHHHcCCCeEEEeccccC---CCCChHHHHHH-HHHHHH
Confidence 4777899999998665432 23455555443 334444
No 134
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=21.73 E-value=1.7e+02 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCCcEEEecCCCCCcCcccccchhhH-HHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTV-gAA~ea~~~GiPaIAvS~~ 145 (213)
..+||||+ +|-| ||+ .||+.....++|-+.+..+
T Consensus 24 ~~~Dlvi~-------iGGD----GTlL~a~~~~~~~~~PvlGIN~G 58 (246)
T PRK04761 24 EEADVIVA-------LGGD----GFMLQTLHRYMNSGKPVYGMNRG 58 (246)
T ss_pred ccCCEEEE-------ECCC----HHHHHHHHHhcCCCCeEEEEeCC
Confidence 47899998 6767 898 7778877789999999875
No 135
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=21.66 E-value=1.3e+02 Score=27.20 Aligned_cols=44 Identities=23% Similarity=0.077 Sum_probs=38.7
Q ss_pred CCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEee
Q 028146 102 VPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 102 ~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~~ 145 (213)
+.|.|+.|-..=.--|.-+.-+||...|+-|-.+++|-+.++-.
T Consensus 183 ~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~ 226 (301)
T TIGR00511 183 EVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAET 226 (301)
T ss_pred hCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEccc
Confidence 58999999887777777788899999999999999999998643
No 136
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.09 E-value=3.3e+02 Score=24.30 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=27.1
Q ss_pred CCCcEEEecCCCCCcCcccccchhhH-HHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTV-gAA~ea~~~GiPaIAvS~~ 145 (213)
..+|+||+ +|-| ||+ .||+.....++|-+.|..+
T Consensus 41 ~~~d~vi~-------iGGD----GT~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 41 QRAQLAIV-------IGGD----GNMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred cCCCEEEE-------ECCc----HHHHHHHHHhccCCCcEEEEeCC
Confidence 36899988 6666 998 6777777789999999874
No 137
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=21.07 E-value=3.9e+02 Score=25.81 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecc--cCCceeEEeC-CChHHHHHHhhhccCCCCCCc
Q 028146 28 PGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FDGVTAYAVS-GTPADCASLGVSQALFPSVPD 104 (213)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~--~~g~~~~~v~-GTPaDcV~~al~~~l~~~~PD 104 (213)
+-+..+++.|.+.| .+++++=... ||+.....-+ ++++ +++.+..+=+ .|+..+ +..++ -..|
T Consensus 224 ~~~~~ra~~Lv~aG-Vd~i~~D~a~-----g~~~~~~~~i--~~i~~~~~~~~vi~g~~~t~~~~-~~l~~-----~G~d 289 (475)
T TIGR01303 224 GDVGGKAKALLDAG-VDVLVIDTAH-----GHQVKMISAI--KAVRALDLGVPIVAGNVVSAEGV-RDLLE-----AGAN 289 (475)
T ss_pred ccHHHHHHHHHHhC-CCEEEEeCCC-----CCcHHHHHHH--HHHHHHCCCCeEEEeccCCHHHH-HHHHH-----hCCC
Confidence 45678888888888 5777664332 5543322211 1221 2344544422 244444 33332 2579
Q ss_pred EEEecCCCCCcCcccccch---hhHHHHHHH----HHcCCCEEEE
Q 028146 105 LVISGINMGSNCGYHVVYS---GTVAGAREA----FFHGVPSVSI 142 (213)
Q Consensus 105 LVvSGIN~G~N~g~dv~yS---GTVgAA~ea----~~~GiPaIAv 142 (213)
.|--|+--|.|+.+..+.- -|+.|-+|+ ...|+|.||=
T Consensus 290 ~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad 334 (475)
T TIGR01303 290 IIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD 334 (475)
T ss_pred EEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 9999999999997653321 366666665 4579999974
No 138
>PRK13782 phosphocarrier protein Chr; Provisional
Probab=21.05 E-value=1.4e+02 Score=21.51 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=29.1
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEe
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
..+-|+|..|+++--...|++..++.. .+|++..
T Consensus 4 ~~~~i~~~~GlHaRPA~~lv~~a~~f~-~~i~l~~ 37 (82)
T PRK13782 4 KRVEVSLKTGLQARPAALFVQEANRFH-ADIFIEK 37 (82)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC-CEEEEEE
Confidence 358899999999999999999999876 5888864
No 139
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=20.86 E-value=1.3e+02 Score=25.90 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=22.3
Q ss_pred ecCCCCCC--ccHHHHHHHHHhcCCceEEEEe
Q 028146 20 TNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 20 TNDDGi~s--~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
.||||-.+ .|...| ++|+..+..+|.||.
T Consensus 69 ~sDDGEPsGTAG~PiL-~vL~~~~l~nv~vVV 99 (204)
T TIGR00257 69 FSDDGEPAGTAGKPML-SVLRGSDLGDIGAVV 99 (204)
T ss_pred CCCCCCCCCCchHHHH-HHHHHCCCCcEEEEE
Confidence 79999976 888776 457777777887763
No 140
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=20.80 E-value=1.2e+02 Score=21.70 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=29.6
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhcCCceEEEEe
Q 028146 14 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 14 ~~~ILlTNDDGi~s~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
..++-++|..|+++-=...|++..++.. .+|++..
T Consensus 3 ~~~~~i~~~~GlHaRpA~~lv~~a~~f~-s~I~i~~ 37 (82)
T TIGR01003 3 SKEVTIINKVGLHARPAAILVKLASGFD-SEITLTK 37 (82)
T ss_pred eEEEEEcCCCcccHHHHHHHHHHHHhCC-CEEEEEE
Confidence 3468899999999998999999998876 5888875
No 141
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=20.79 E-value=2.2e+02 Score=27.72 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCceEEEEecCCCCCcCcccccCCCceeeeecccCC-ceeEEeCCCh-H---HHHHHhhhccCCCCCCc
Q 028146 30 LRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG-VTAYAVSGTP-A---DCASLGVSQALFPSVPD 104 (213)
Q Consensus 30 i~aL~~aL~~~g~~~V~VVAP~~~~Sg~g~sit~~~pl~v~~~~~~g-~~~~~v~GTP-a---DcV~~al~~~l~~~~PD 104 (213)
--.|.+.|++.| ++|.++.+.- +|.+.+.-..-+ ..| .++|+..|-. - +|..-+|+. .-..+||
T Consensus 58 Ta~l~~tL~~~G-A~v~~~~~n~--------~stqD~~aaal~-~~g~i~vfa~~g~t~eey~~~~~~~l~~-~~~~~p~ 126 (476)
T PTZ00075 58 TAVLIETLKALG-AEVRWCSCNI--------FSTQDHAAAAIA-KAGSVPVFAWKGETLEEYWWCTEQALKW-PNGDGPN 126 (476)
T ss_pred HHHHHHHHHHcC-CEEEEEcCCC--------CccccHHHHHHH-hcCCeEEEEecCCCHHHHHHHHHHHHhc-cCCCCCC
Confidence 446777788777 6887665311 111111110001 135 7788888764 4 488889873 2234799
Q ss_pred EEE
Q 028146 105 LVI 107 (213)
Q Consensus 105 LVv 107 (213)
+++
T Consensus 127 ~i~ 129 (476)
T PTZ00075 127 LIV 129 (476)
T ss_pred EEE
Confidence 886
No 142
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=20.77 E-value=76 Score=29.70 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=18.6
Q ss_pred ccchhhHHHHHHHHHcCCCEEEEE
Q 028146 120 VVYSGTVAGAREAFFHGVPSVSIS 143 (213)
Q Consensus 120 v~ySGTVgAA~ea~~~GiPaIAvS 143 (213)
+..||| |.+|+++.|+|.+-+=
T Consensus 265 l~~SGT--aTLE~Al~g~P~Vv~Y 286 (373)
T PF02684_consen 265 LAASGT--ATLEAALLGVPMVVAY 286 (373)
T ss_pred hhcCCH--HHHHHHHhCCCEEEEE
Confidence 568999 5789999999999663
No 143
>TIGR01441 GPR GPR endopeptidase. This model describes a tetrameric protease that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs.
Probab=20.71 E-value=3.3e+02 Score=25.67 Aligned_cols=52 Identities=29% Similarity=0.493 Sum_probs=32.4
Q ss_pred eCCChHHHHHHhhhccCCCCCCcEEE---------------------ecCCCCCcCccc--ccchhhHHHHHHHHHcCCC
Q 028146 82 VSGTPADCASLGVSQALFPSVPDLVI---------------------SGINMGSNCGYH--VVYSGTVAGAREAFFHGVP 138 (213)
Q Consensus 82 v~GTPaDcV~~al~~~l~~~~PDLVv---------------------SGIN~G~N~g~d--v~ySGTVgAA~ea~~~GiP 138 (213)
..|-=.-=+..|+-. ..+||+|| .||+.|.=.|.. -+..-| .|||
T Consensus 157 ~TGiET~EIIkgiVe---k~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~et---------LGVP 224 (358)
T TIGR01441 157 ITGIETSDIIRGIIE---QIKPDFVIAIDALAARKMERVNSTIQISDTGIHPGSGVGNKRKELSKKT---------LGVP 224 (358)
T ss_pred cccccHHHHHHHHHH---hhCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCHHH---------cCCC
Confidence 444444445555532 24899997 488888755532 223333 6999
Q ss_pred EEEEEee
Q 028146 139 SVSISYD 145 (213)
Q Consensus 139 aIAvS~~ 145 (213)
.||+-..
T Consensus 225 VIAIGVP 231 (358)
T TIGR01441 225 VIAVGVP 231 (358)
T ss_pred EEEEcCC
Confidence 9999764
No 144
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=20.55 E-value=2.6e+02 Score=27.58 Aligned_cols=34 Identities=35% Similarity=0.229 Sum_probs=27.2
Q ss_pred CCCcEEEecCCCCCcCcccccchhhH-HHHHHHHHcCCCEEEEEee
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTV-AGAREAFFHGVPSVSISYD 145 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTV-gAA~ea~~~GiPaIAvS~~ 145 (213)
..+||||+ +|-| ||+ .||+.....++|.+.|+++
T Consensus 261 ~~~DlVIs-------iGGD----GTlL~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 261 TKVDLVIT-------LGGD----GTVLWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred cCCCEEEE-------ECCc----HHHHHHHHHhccCCCcEEEEeCC
Confidence 36899988 6766 898 7777777788999999875
No 145
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=20.53 E-value=1.5e+02 Score=27.42 Aligned_cols=44 Identities=30% Similarity=0.160 Sum_probs=38.3
Q ss_pred CCCcEEEecCCCCCcCcccccchhhHHHHHHHHHcCCCEEEEEe
Q 028146 101 SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISY 144 (213)
Q Consensus 101 ~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPaIAvS~ 144 (213)
++.|.|+.|-..=.--|.-+.-.||-..|+-|-.+|+|-+.+.-
T Consensus 224 ~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 224 GEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred cCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 47999999988776667777889999999999999999998753
No 146
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=20.34 E-value=1.2e+02 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=18.2
Q ss_pred cchhhHHHHHHHHHcCCCEEEEEe
Q 028146 121 VYSGTVAGAREAFFHGVPSVSISY 144 (213)
Q Consensus 121 ~ySGTVgAA~ea~~~GiPaIAvS~ 144 (213)
+.||+ +..+||..+|+|.|++..
T Consensus 258 ~~~g~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 258 CRAGA-STVAELAAAGLPAILVPL 280 (357)
T ss_pred ECCCH-HHHHHHHHhCCCEEEecC
Confidence 34664 567899999999999864
No 147
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=20.29 E-value=7.8e+02 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=20.2
Q ss_pred CeEEEecCCCCCCccHHHHHHHHHhc--CCceEEEEecC
Q 028146 15 PTIMVTNDDGIDAPGLRSLVRVLVST--NRYTVQVCAPD 51 (213)
Q Consensus 15 ~~ILlTNDDGi~s~Gi~aL~~aL~~~--g~~~V~VVAP~ 51 (213)
|||||.---|- -++|+.+|++. | .+|+++ |-
T Consensus 1 mkVLviG~Ggr----ehal~~~l~~s~~g-~~v~~~-~g 33 (486)
T PRK05784 1 MKVLLVGDGAR----EHALAEALEKSTKG-YKVYAL-SS 33 (486)
T ss_pred CEEEEECCchh----HHHHHHHHHhCCCC-CEEEEE-EC
Confidence 68888533322 56788888776 6 567766 64
No 148
>PRK02858 germination protease; Provisional
Probab=20.26 E-value=3.3e+02 Score=25.77 Aligned_cols=52 Identities=29% Similarity=0.531 Sum_probs=31.9
Q ss_pred eCCChHHHHHHhhhccCCCCCCcEEE---------------------ecCCCCCcCccc--ccchhhHHHHHHHHHcCCC
Q 028146 82 VSGTPADCASLGVSQALFPSVPDLVI---------------------SGINMGSNCGYH--VVYSGTVAGAREAFFHGVP 138 (213)
Q Consensus 82 v~GTPaDcV~~al~~~l~~~~PDLVv---------------------SGIN~G~N~g~d--v~ySGTVgAA~ea~~~GiP 138 (213)
..|-=.-=+..|+-. ..+||+|| .||+.|.=.|.. -+..-| .|||
T Consensus 167 ~TGiET~EIIkgIVe---k~KPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~et---------LGVP 234 (369)
T PRK02858 167 ITGIETSDIIYGIIE---KTKPDFVIAIDALAARSIERVNTTIQISDTGIHPGSGVGNKRKELSKET---------LGIP 234 (369)
T ss_pred ccchhHHHHHHHHHH---hhCCCEEEEechhhcCchhhccCeEEecCCCcCCCCCcCccccccCHHH---------cCCC
Confidence 344444444555532 24899997 488888755532 222333 6999
Q ss_pred EEEEEee
Q 028146 139 SVSISYD 145 (213)
Q Consensus 139 aIAvS~~ 145 (213)
.||+-..
T Consensus 235 VIAIGVP 241 (369)
T PRK02858 235 VIAIGVP 241 (369)
T ss_pred EEEEcCC
Confidence 9999764
No 149
>PF03324 Herpes_HEPA: Herpesvirus DNA helicase/primase complex associated protein; InterPro: IPR004996 This is a family of proteins expressed by members of the Herpesviridae.; GO: 0019079 viral genome replication
Probab=20.20 E-value=75 Score=23.93 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=23.2
Q ss_pred CCeEEEecCCCCCCccHHHHHHHHHhc
Q 028146 14 KPTIMVTNDDGIDAPGLRSLVRVLVST 40 (213)
Q Consensus 14 ~~~ILlTNDDGi~s~Gi~aL~~aL~~~ 40 (213)
...+|++|+|+.....|.+++++|-+.
T Consensus 29 ~fd~l~~~~~~~~~~~L~~~~r~l~~~ 55 (93)
T PF03324_consen 29 FFDCLVVDSQCFWNLALMAFFRQLYEK 55 (93)
T ss_pred eEEEEEECchhhhHHHHHHHHHHHHHH
Confidence 567999999999999999999988653
No 150
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=20.09 E-value=87 Score=26.86 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHhcCCceEEEEecCCCC
Q 028146 28 PGLRSLVRVLVSTNRYTVQVCAPDSEK 54 (213)
Q Consensus 28 ~Gi~aL~~aL~~~g~~~V~VVAP~~~~ 54 (213)
--+..|.++|.+.| ++|+++++....
T Consensus 16 ~~~~~l~~~L~~~~-~~v~~i~~~~~~ 41 (358)
T cd03812 16 TFIMNYYRNLDRSK-IQFDFLVTSKEE 41 (358)
T ss_pred HHHHHHHHhcCccc-eEEEEEEeCCCC
Confidence 34667788888778 899999986543
No 151
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=20.05 E-value=2e+02 Score=19.47 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=20.5
Q ss_pred eEEEecCCCCCC--ccHHHHHHHHHhcCCceEEEEe
Q 028146 16 TIMVTNDDGIDA--PGLRSLVRVLVSTNRYTVQVCA 49 (213)
Q Consensus 16 ~ILlTNDDGi~s--~Gi~aL~~aL~~~g~~~V~VVA 49 (213)
.+|+.|.+...+ .-++.|.+-+++ | .+++|+|
T Consensus 37 tll~i~~~~~~~~~~~~~~l~~~v~~-G-~~lvl~a 70 (70)
T PF14258_consen 37 TLLVIGPDLRLSEPEEAEALLEWVEA-G-NTLVLAA 70 (70)
T ss_pred EEEEEeCCCCCCchHHHHHHHHHHHc-C-CEEEEeC
Confidence 477777775443 566777777764 4 3677764
No 152
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.04 E-value=1.2e+02 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=20.1
Q ss_pred cHHHHHHHHHhcCCceEEEEecCCC
Q 028146 29 GLRSLVRVLVSTNRYTVQVCAPDSE 53 (213)
Q Consensus 29 Gi~aL~~aL~~~g~~~V~VVAP~~~ 53 (213)
-+..|+++|.+.| |+|.|+++...
T Consensus 20 ~~~~la~~L~~~g-~~v~v~~~~~~ 43 (363)
T cd04955 20 FVEELAPRLVARG-HEVTVYCRSPY 43 (363)
T ss_pred HHHHHHHHHHhcC-CCEEEEEccCC
Confidence 3678899999999 89999998654
Done!