Query 028148
Match_columns 213
No_of_seqs 158 out of 480
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 11:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tr8_A Conserved protein (MTH1 100.0 4.7E-37 1.6E-41 238.5 9.6 97 74-212 2-102 (102)
2 3mce_A Nascent polypeptide-ass 99.9 1.6E-24 5.6E-29 154.5 4.4 57 73-129 5-61 (61)
3 3mcb_A Nascent polypeptide-ass 99.9 9.1E-24 3.1E-28 147.3 5.6 54 75-128 1-54 (54)
4 3mcb_B Transcription factor BT 99.2 7.1E-11 2.4E-15 83.3 7.1 48 82-129 2-49 (58)
5 3lkx_A Transcription factor BT 99.1 1.4E-10 4.7E-15 83.7 7.3 48 82-129 2-49 (66)
6 1wj7_A Hypothetical protein (R 98.5 5.1E-08 1.7E-12 75.8 3.7 37 176-212 40-76 (104)
7 2cp9_A EF-TS, EF-TSMT, elongat 98.2 1.6E-06 5.4E-11 62.1 4.6 40 173-212 7-46 (64)
8 1z96_A DNA-damage, UBA-domain 97.1 0.0005 1.7E-08 43.1 3.7 34 177-211 6-39 (40)
9 2g3q_A Protein YBL047C; endocy 95.1 0.011 3.8E-07 37.9 2.2 34 176-210 5-38 (43)
10 1wji_A Tudor domain containing 94.8 0.03 1E-06 39.2 3.9 36 174-210 8-43 (63)
11 2dak_A Ubiquitin carboxyl-term 94.2 0.041 1.4E-06 38.1 3.6 35 174-209 8-42 (63)
12 1wiv_A UBP14, ubiquitin-specif 93.8 0.063 2.1E-06 38.5 3.9 37 173-210 27-63 (73)
13 1whc_A RSGI RUH-027, UBA/UBX 3 93.5 0.097 3.3E-06 36.5 4.4 35 173-208 7-42 (64)
14 1wgn_A UBAP1, ubiquitin associ 93.5 0.046 1.6E-06 38.9 2.7 31 177-208 21-51 (63)
15 1vg5_A RSGI RUH-014, rhomboid 93.4 0.074 2.5E-06 38.5 3.8 36 175-211 29-64 (73)
16 2cpw_A CBL-interacting protein 93.4 0.1 3.6E-06 36.4 4.4 34 174-208 18-52 (64)
17 1veg_A NEDD8 ultimate buster-1 93.0 0.094 3.2E-06 38.9 3.9 34 174-208 28-61 (83)
18 2dai_A Ubadc1, ubiquitin assoc 92.8 0.11 3.8E-06 38.2 4.1 35 173-208 27-61 (83)
19 2jy5_A Ubiquilin-1; UBA, alter 92.6 0.13 4.3E-06 34.5 3.8 34 177-211 14-48 (52)
20 1ify_A HHR23A, UV excision rep 92.5 0.087 3E-06 34.9 2.9 33 177-210 10-42 (49)
21 2knz_A Ubiquilin-4; cytoplasm, 92.4 0.13 4.3E-06 34.6 3.7 33 178-211 14-47 (53)
22 2ekk_A UBA domain from E3 ubiq 92.0 0.14 4.9E-06 33.2 3.4 34 173-208 7-40 (47)
23 2crn_A Ubash3A protein; compac 91.9 0.25 8.6E-06 34.5 4.8 35 173-208 7-42 (64)
24 2bwb_A Ubiquitin-like protein 91.7 0.19 6.5E-06 33.0 3.8 33 178-211 10-43 (46)
25 2dag_A Ubiquitin carboxyl-term 91.7 0.16 5.5E-06 36.5 3.7 34 174-208 8-42 (74)
26 2dah_A Ubiquilin-3; UBA domain 90.9 0.17 5.7E-06 34.4 2.9 33 178-211 12-45 (54)
27 2ooa_A E3 ubiquitin-protein li 90.6 0.21 7.1E-06 34.3 3.2 30 177-207 13-42 (52)
28 1wr1_B Ubiquitin-like protein 90.2 0.29 9.9E-06 33.8 3.7 33 178-211 20-53 (58)
29 1v92_A NSFL1 cofactor P47; 3-h 90.0 0.31 1.1E-05 31.0 3.6 33 178-210 8-40 (46)
30 2d9s_A CBL E3 ubiquitin protei 89.0 0.32 1.1E-05 33.4 3.2 29 178-207 12-40 (53)
31 2lbc_A Ubiquitin carboxyl-term 89.0 0.36 1.2E-05 37.2 3.9 37 174-211 77-113 (126)
32 2dkl_A Trinucleotide repeat co 88.3 0.52 1.8E-05 34.8 4.1 33 176-209 22-54 (85)
33 2dal_A Protein KIAA0794; FAS a 86.8 0.8 2.7E-05 31.5 4.1 34 177-210 17-50 (62)
34 1vej_A Riken cDNA 4931431F19; 86.7 0.69 2.4E-05 33.5 3.9 34 177-211 31-65 (74)
35 1vek_A UBP14, ubiquitin-specif 86.6 0.71 2.4E-05 33.8 4.0 35 173-208 27-62 (84)
36 4ae4_A Ubiquitin-associated pr 84.6 0.71 2.4E-05 35.9 3.3 24 186-209 86-109 (118)
37 1otr_A Protein CUE2; protein-p 84.3 0.8 2.7E-05 30.7 3.1 35 177-211 6-41 (49)
38 2dna_A Unnamed protein product 84.1 0.8 2.7E-05 32.6 3.1 33 178-211 22-55 (67)
39 2dzl_A Protein FAM100B; UBA-li 84.0 1.2 4.3E-05 31.1 4.1 33 178-210 20-52 (66)
40 2cp8_A NEXT to BRCA1 gene 1 pr 83.5 0.76 2.6E-05 31.6 2.7 26 186-211 19-45 (54)
41 2oo9_A E3 ubiquitin-protein li 82.9 1.4 4.8E-05 29.4 3.7 29 178-207 7-35 (46)
42 2cwb_A Chimera of immunoglobul 79.6 1.6 5.6E-05 33.6 3.7 29 183-211 73-102 (108)
43 1dv0_A DNA repair protein HHR2 78.2 1.6 5.5E-05 28.5 2.8 30 178-208 7-36 (47)
44 2dam_A ETEA protein; KIAA0887, 75.8 3.2 0.00011 29.0 4.0 33 178-210 21-54 (67)
45 3e21_A HFAF1, FAS-associated f 74.4 3.3 0.00011 27.2 3.5 33 178-210 8-41 (45)
46 1nri_A Hypothetical protein HI 72.9 0.94 3.2E-05 39.3 0.8 35 177-211 246-280 (306)
47 1eej_A Thiol:disulfide interch 72.9 8.5 0.00029 31.0 6.5 43 69-122 2-51 (216)
48 1wgl_A TOLL-interacting protei 72.5 3.3 0.00011 28.4 3.3 38 174-211 8-46 (59)
49 2juj_A E3 ubiquitin-protein li 71.7 2.5 8.5E-05 29.3 2.5 30 177-207 9-38 (56)
50 3k9o_A Ubiquitin-conjugating e 69.1 4.3 0.00015 33.4 3.9 33 178-211 166-198 (201)
51 4dbg_B Ring finger protein 31; 64.4 5.4 0.00018 32.9 3.5 24 187-210 74-97 (162)
52 2cos_A Serine/threonine protei 63.3 3.6 0.00012 28.3 1.9 23 185-207 18-40 (54)
53 4dbg_B Ring finger protein 31; 61.7 4.5 0.00015 33.4 2.6 36 177-212 104-139 (162)
54 4ae4_A Ubiquitin-associated pr 61.0 6.1 0.00021 30.5 3.1 26 184-210 16-41 (118)
55 3k6g_A Telomeric repeat-bindin 58.6 13 0.00044 28.8 4.5 36 176-211 14-49 (111)
56 3ihp_A Ubiquitin carboxyl-term 51.3 10 0.00036 37.7 3.7 36 173-209 718-753 (854)
57 1vdl_A Ubiquitin carboxyl-term 48.6 8.7 0.0003 28.2 2.0 26 187-212 36-62 (80)
58 2dhy_A CUE domain-containing p 44.7 19 0.00066 25.3 3.3 25 187-211 31-55 (67)
59 1oai_A Nuclear RNA export fact 44.3 32 0.0011 23.3 4.3 32 179-210 11-42 (59)
60 1nri_A Hypothetical protein HI 38.8 6.5 0.00022 34.0 0.0 30 179-208 275-304 (306)
61 3e46_A Ubiquitin-conjugating e 38.8 27 0.00094 30.0 4.0 27 185-211 224-250 (253)
62 1oqy_A HHR23A, UV excision rep 37.0 15 0.00052 33.3 2.2 33 178-211 171-203 (368)
63 1t3b_A Thiol:disulfide interch 36.2 14 0.00048 29.7 1.6 41 71-122 4-51 (211)
64 3bny_A Aristolochene synthase; 32.8 24 0.00081 29.8 2.6 24 177-200 243-266 (320)
65 2jp7_A MRNA export factor MEX6 30.1 53 0.0018 22.2 3.5 33 179-211 10-42 (57)
66 2xvc_A ESCRT-III, SSO0910; cel 29.6 44 0.0015 23.2 3.0 22 178-199 27-48 (59)
67 1di1_A Aristolochene synthase; 29.5 29 0.001 28.8 2.6 24 177-200 229-252 (300)
68 2lva_A Ubiquitin carboxyl-term 34.8 12 0.00041 29.8 0.0 20 193-212 37-56 (129)
69 4ham_A LMO2241 protein; struct 27.8 43 0.0015 25.0 3.1 20 180-199 42-61 (134)
70 3tqn_A Transcriptional regulat 27.6 45 0.0015 24.3 3.1 22 178-199 35-56 (113)
71 1wj7_A Hypothetical protein (R 26.1 50 0.0017 25.2 3.1 34 170-203 48-81 (104)
72 1ps1_A Pentalenene synthase; a 25.8 44 0.0015 28.4 3.1 25 175-199 233-257 (337)
73 2k9i_A Plasmid PRN1, complete 25.2 63 0.0021 20.1 3.1 22 177-198 22-44 (55)
74 1cw0_A Protein (DNA mismatch e 25.2 41 0.0014 27.0 2.6 36 60-95 15-56 (155)
75 3neu_A LIN1836 protein; struct 23.8 57 0.002 24.2 3.1 22 178-199 39-60 (125)
76 2cpg_A REPA protein, transcrip 23.7 73 0.0025 19.1 3.1 21 178-198 16-37 (45)
77 2qsf_X RAD23, UV excision repa 23.5 84 0.0029 25.8 4.2 31 177-208 132-162 (171)
78 2b0l_A GTP-sensing transcripti 23.4 60 0.0021 23.6 3.1 22 178-199 45-66 (102)
79 2fpn_A YWMB; structural genomo 22.5 42 0.0014 28.3 2.3 55 69-123 144-211 (216)
80 2ek5_A Predicted transcription 21.0 68 0.0023 24.2 3.0 22 178-199 30-51 (129)
81 3by6_A Predicted transcription 20.4 73 0.0025 23.7 3.1 22 178-199 37-58 (126)
82 3edp_A LIN2111 protein; APC883 20.1 60 0.002 26.7 2.7 21 179-199 36-56 (236)
No 1
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=100.00 E-value=4.7e-37 Score=238.46 Aligned_cols=97 Identities=37% Similarity=0.558 Sum_probs=81.9
Q ss_pred HHHHHcCC--eecCCceEEEEEecCceEEEecCCeEEe--eCCCceEEEeccceecchhhHHHHHHHHhhcCCCCCCCCC
Q 028148 74 KAMLKLGM--KPVTGVSRVTIKRTKNILFFISKPDVFK--SPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMA 149 (213)
Q Consensus 74 K~mkKLGl--k~V~gV~rVtIrk~dn~lfvI~~PdVyK--spgsdTYvVFGEak~eD~s~q~q~~aae~~~~~~~~~~~~ 149 (213)
|||+|||| ++|+||+||+||+++ .+|+|++|+||+ +||++||+|||+++.+++.
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~--------------------- 59 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE--------------------- 59 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeeccc---------------------
Confidence 68999999 789999999999998 899999999996 8999999999999987651
Q ss_pred CCCcchhhccCCCCcchhhhccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028148 150 KPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 150 ~~~~~~~~~~~~~~e~eeevde~gv~eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~Lt 212 (213)
+ ++||+++||+|||+||||||++|++||++||||||+|||.||
T Consensus 60 -----------------~---e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 60 -----------------A---EMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp -----------------E---ECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred -----------------c---cCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 0 168999999999999999999999999999999999999996
No 2
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.90 E-value=1.6e-24 Score=154.46 Aligned_cols=57 Identities=65% Similarity=1.073 Sum_probs=51.3
Q ss_pred HHHHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028148 73 RKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 129 (213)
Q Consensus 73 rK~mkKLGlk~V~gV~rVtIrk~dn~lfvI~~PdVyKspgsdTYvVFGEak~eD~s~ 129 (213)
|++|+||||++|+||+||+|||++|++|+|++|+||++|+++||||||+++++|+++
T Consensus 5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q 61 (61)
T 3mce_A 5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61 (61)
T ss_dssp SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence 568999999999999999999999999999999999999999999999999999863
No 3
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.89 E-value=9.1e-24 Score=147.33 Aligned_cols=54 Identities=72% Similarity=1.169 Sum_probs=52.1
Q ss_pred HHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchh
Q 028148 75 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLS 128 (213)
Q Consensus 75 ~mkKLGlk~V~gV~rVtIrk~dn~lfvI~~PdVyKspgsdTYvVFGEak~eD~s 128 (213)
+|+||||++|+||+||+|||++|.+|+|++|+||++|+++||+|||+++++|++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~ 54 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence 489999999999999999999999999999999999999999999999999974
No 4
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.16 E-value=7.1e-11 Score=83.27 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=45.3
Q ss_pred eecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028148 82 KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 129 (213)
Q Consensus 82 k~V~gV~rVtIrk~dn~lfvI~~PdVyKspgsdTYvVFGEak~eD~s~ 129 (213)
..|+||.||+|+|.+|++|+|++|.|+.|+.++||+|+|.++..++..
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e 49 (58)
T 3mcb_B 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (58)
T ss_dssp CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence 578999999999999999999999999999999999999999988864
No 5
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=83.70 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=44.4
Q ss_pred eecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028148 82 KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST 129 (213)
Q Consensus 82 k~V~gV~rVtIrk~dn~lfvI~~PdVyKspgsdTYvVFGEak~eD~s~ 129 (213)
..|+||.||+|+|.+|++|+|++|.|+.|+.++||+|+|.++..++..
T Consensus 2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e 49 (66)
T 3lkx_A 2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE 49 (66)
T ss_dssp EECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred cccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence 578999999999999999999999999999999999999999998864
No 6
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.52 E-value=5.1e-08 Score=75.83 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=34.9
Q ss_pred ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028148 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 176 eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~Lt 212 (213)
+++|++||++||||+++|++||.++||||..||+.|-
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll 76 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL 76 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4699999999999999999999999999999999883
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=98.18 E-value=1.6e-06 Score=62.09 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=37.8
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028148 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 173 gv~eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~Lt 212 (213)
.|+.++|+.+.++||++...+++||.++||||..||.-|.
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5888999999999999999999999999999999998873
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.08 E-value=0.0005 Score=43.10 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=30.1
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~AIM~L 211 (213)
+.|..+|+. |.||+.|++||+.++||+-.|+--|
T Consensus 6 ~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 6 SKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 478888887 9999999999999999998887554
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.09 E-value=0.011 Score=37.86 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=27.5
Q ss_pred ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 176 eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
++.|..+|+ .|.+|+.|++||+.++||+=.|+=-
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~ 38 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLEAATNF 38 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHH
Confidence 345777766 7999999999999999999776543
No 10
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.76 E-value=0.03 Score=39.24 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=29.8
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 174 v~eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
++++.|..+|+ .|.+|..|++||+.++||+=.|+--
T Consensus 8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~ 43 (63)
T 1wji_A 8 VDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNV 43 (63)
T ss_dssp SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 56677887775 7999999999999999998766543
No 11
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.18 E-value=0.041 Score=38.12 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028148 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 174 v~eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM 209 (213)
++++-|..+|+ .|.+|..|++||+.++|++=.|+-
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e 42 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 42 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 45667777776 799999999999999999755553
No 12
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.75 E-value=0.063 Score=38.54 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=30.6
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 173 gv~eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
.++++.|..+| ..|.+|..|++||+.++|++=.|+=-
T Consensus 27 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave~ 63 (73)
T 1wiv_A 27 DIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATDW 63 (73)
T ss_dssp SSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 46677887777 47999999999999999999777643
No 13
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.48 E-value=0.097 Score=36.54 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=29.2
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhc-CCcHHHHH
Q 028148 173 GVEPRDIDLVMTQAGVSRSKAVKALKTH-NGDIVSAI 208 (213)
Q Consensus 173 gv~eeDIeLVmeQagvSRekAvkALke~-nGDIV~AI 208 (213)
.++++-|..+|+ .|.+|..|++||+.+ ||++=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 42 (64)
T 1whc_A 7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAM 42 (64)
T ss_dssp CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHH
Confidence 466778888776 899999999999999 79986664
No 14
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.48 E-value=0.046 Score=38.90 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.7
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~AI 208 (213)
+.|+.|+ -.|.|+..|++|||.++|+|-.|.
T Consensus 21 e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa 51 (63)
T 1wgn_A 21 QCVETVV-NMGYSYECVLRAMKKKGENIEQIL 51 (63)
T ss_dssp HHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 5677777 468999999999999999997774
No 15
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.37 E-value=0.074 Score=38.46 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.7
Q ss_pred CccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 175 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 175 ~eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~L 211 (213)
.++.|..+|+ .|.+|+.|++||+.++||+=.|+=-|
T Consensus 29 ~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~L 64 (73)
T 1vg5_A 29 SEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEIL 64 (73)
T ss_dssp CHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3567888876 79999999999999999997776433
No 16
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.36 E-value=0.1 Score=36.43 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=28.1
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028148 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 208 (213)
Q Consensus 174 v~eeDIeLVmeQagvSRekAvkALke~nG-DIV~AI 208 (213)
+++..|..+|+ .|.+|..|++||+.++| ++=.|+
T Consensus 18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ 52 (64)
T 2cpw_A 18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC 52 (64)
T ss_dssp SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHH
Confidence 44567877776 89999999999999998 886664
No 17
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.00 E-value=0.094 Score=38.92 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=28.9
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028148 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 174 v~eeDIeLVmeQagvSRekAvkALke~nGDIV~AI 208 (213)
++++-|..+|+ .|.+|..|++||+.++||+=.|+
T Consensus 28 ~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~ 61 (83)
T 1veg_A 28 PSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAA 61 (83)
T ss_dssp CCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 45678888875 69999999999999999986665
No 18
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.81 E-value=0.11 Score=38.21 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=29.7
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028148 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 173 gv~eeDIeLVmeQagvSRekAvkALke~nGDIV~AI 208 (213)
.++++-|..+|+ .|.+|..|++||+.++|++=.|+
T Consensus 27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ 61 (83)
T 2dai_A 27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAM 61 (83)
T ss_dssp SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence 466778888776 89999999999999999986664
No 19
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=92.57 E-value=0.13 Score=34.53 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=28.1
Q ss_pred cchHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028148 177 RDIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 177 eDIeLVmeQagv-SRekAvkALke~nGDIV~AIM~L 211 (213)
..|..+++ .|. +|..|++||+.++||+=.||--|
T Consensus 14 ~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 14 QQLEQLSA-MGFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 45666664 689 99999999999999998887655
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.53 E-value=0.087 Score=34.88 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=25.9
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
+.|..+| ..|.+|..|++||+.++||+=.|+=-
T Consensus 10 ~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~e~ 42 (49)
T 1ify_A 10 TMLTEIM-SMGYERERVVAALRASYNNPHRAVEY 42 (49)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 3455554 45999999999999999998777643
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=92.41 E-value=0.13 Score=34.59 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=26.8
Q ss_pred chHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028148 178 DIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVmeQagv-SRekAvkALke~nGDIV~AIM~L 211 (213)
.|..+++ .|. +|..|++||+.++||+=.||--|
T Consensus 14 ~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L 47 (53)
T 2knz_A 14 QLEQLNS-MGFINREANLQALIATGGDINAAIERL 47 (53)
T ss_dssp HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4665554 588 99999999999999998887554
No 22
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.95 E-value=0.14 Score=33.23 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=27.5
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028148 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 173 gv~eeDIeLVmeQagvSRekAvkALke~nGDIV~AI 208 (213)
.++++.|..+|+ .|.+|+.|++||+.++ ++=.|+
T Consensus 7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~ 40 (47)
T 2ekk_A 7 GVNQQQLQQLMD-MGFTREHAMEALLNTS-TMEQAT 40 (47)
T ss_dssp SSCHHHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHH
Confidence 456778888876 8999999999999994 765554
No 23
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.86 E-value=0.25 Score=34.53 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028148 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 208 (213)
Q Consensus 173 gv~eeDIeLVmeQagvSRekAvkALke~nG-DIV~AI 208 (213)
..+++.|.-+|+ .|.+|+.|++||+.++| ++=.|+
T Consensus 7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~ 42 (64)
T 2crn_A 7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL 42 (64)
T ss_dssp CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 356678887777 89999999999999987 775554
No 24
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=91.71 E-value=0.19 Score=32.98 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=25.5
Q ss_pred chHHHHhhhCCC-HHHHHHHHHhcCCcHHHHHhhh
Q 028148 178 DIDLVMTQAGVS-RSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVmeQagvS-RekAvkALke~nGDIV~AIM~L 211 (213)
-|.-++ ..|.+ |..+++||+.++||+=.||--|
T Consensus 10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 344444 46875 7888999999999999888665
No 25
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.67 E-value=0.16 Score=36.48 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=27.4
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028148 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI 208 (213)
Q Consensus 174 v~eeDIeLVmeQagvSRekAvkALke~nG-DIV~AI 208 (213)
++++-|..+|+ .|.+|..|++||+.++| ++=.|+
T Consensus 8 ~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ 42 (74)
T 2dag_A 8 LDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAM 42 (74)
T ss_dssp SCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence 55666777776 89999999999999997 775554
No 26
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.86 E-value=0.17 Score=34.36 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=25.2
Q ss_pred chHHHHhhhCCCHHH-HHHHHHhcCCcHHHHHhhh
Q 028148 178 DIDLVMTQAGVSRSK-AVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVmeQagvSRek-AvkALke~nGDIV~AIM~L 211 (213)
-|..++ ..|.++.. +++||+.++|||=.||-.|
T Consensus 12 ~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L 45 (54)
T 2dah_A 12 QLEQLR-SMGFLNREANLQALIATGGDVDAAVEKL 45 (54)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 455444 55997765 6999999999998887655
No 27
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=90.58 E-value=0.21 Score=34.29 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=25.2
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSA 207 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~A 207 (213)
+-|+-.|+ .|.||+.|++||+-++|||--|
T Consensus 13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A 42 (52)
T 2ooa_A 13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA 42 (52)
T ss_dssp HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence 46777776 4999999999999999998444
No 28
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=90.20 E-value=0.29 Score=33.76 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=25.9
Q ss_pred chHHHHhhhCCC-HHHHHHHHHhcCCcHHHHHhhh
Q 028148 178 DIDLVMTQAGVS-RSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVmeQagvS-RekAvkALke~nGDIV~AIM~L 211 (213)
-|..++ ..|.+ |..+++||+.++||+=.||-.|
T Consensus 20 qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L 53 (58)
T 1wr1_B 20 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL 53 (58)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 455555 45875 8888999999999998888655
No 29
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=90.05 E-value=0.31 Score=30.97 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=29.1
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
-|.-.++=|||++..|+..|..+++|+-.||-.
T Consensus 8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ 40 (46)
T 1v92_A 8 ALREFVAVTGAEEDRARFFLESAGWDLQIALAS 40 (46)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence 467778889999999999999999999988743
No 30
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=89.03 E-value=0.32 Score=33.44 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=24.8
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028148 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSA 207 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke~nGDIV~A 207 (213)
-|+..|++ |.||+.|++||.-++|||--|
T Consensus 12 ~I~~L~~l-GF~r~~ai~AL~~a~nnve~A 40 (53)
T 2d9s_A 12 EIERLMSQ-GYSYQDIQKALVIAHNNIEMA 40 (53)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHhcCCHHHH
Confidence 38888864 999999999999999999554
No 31
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=88.98 E-value=0.36 Score=37.18 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=30.2
Q ss_pred CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 174 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 174 v~eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~L 211 (213)
++++-|.-+|+ .|++|..|++||+.++||+-.|+=-|
T Consensus 77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L 113 (126)
T 2lbc_A 77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWI 113 (126)
T ss_dssp CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45667777776 79999999999999999997776444
No 32
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.32 E-value=0.52 Score=34.78 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=27.1
Q ss_pred ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028148 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 176 eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM 209 (213)
++-|..+++ .|.+|..|++||+.++|++=.|+=
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~e 54 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMS 54 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 455666665 799999999999999999977763
No 33
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.76 E-value=0.8 Score=31.54 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=30.3
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
+-|.-.|.=|||++..|+..|..+++|+-.||-.
T Consensus 17 e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ 50 (62)
T 2dal_A 17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTM 50 (62)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3588888999999999999999999999999854
No 34
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.71 E-value=0.69 Score=33.46 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=26.8
Q ss_pred cchHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028148 177 RDIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 177 eDIeLVmeQagv-SRekAvkALke~nGDIV~AIM~L 211 (213)
+-|..++ ..|. .|..+++||+.++|||=.||=-|
T Consensus 31 ~qi~qL~-eMGF~dr~~~~~AL~~t~Gnve~Ave~L 65 (74)
T 1vej_A 31 QELEELK-ALGFANRDANLQALVATDGDIHAAIEML 65 (74)
T ss_dssp HHHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 4566655 4587 58999999999999998887555
No 35
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=86.58 E-value=0.71 Score=33.83 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=28.5
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcC-CcHHHHH
Q 028148 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHN-GDIVSAI 208 (213)
Q Consensus 173 gv~eeDIeLVmeQagvSRekAvkALke~n-GDIV~AI 208 (213)
.++++-|..+|+ .|.+|..|++||+.++ |++=.|+
T Consensus 27 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ 62 (84)
T 1vek_A 27 VANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAM 62 (84)
T ss_dssp CCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHH
Confidence 456778888876 8999999999999995 6886664
No 36
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=84.57 E-value=0.71 Score=35.86 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.8
Q ss_pred hCCCHHHHHHHHHhcCCcHHHHHh
Q 028148 186 AGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 186 agvSRekAvkALke~nGDIV~AIM 209 (213)
.|.++..|++||+.||||+=.|+=
T Consensus 86 MGF~~~~a~~AL~~~~nd~erAle 109 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNNDQDNALE 109 (118)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 599999999999999999988863
No 37
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=84.34 E-value=0.8 Score=30.70 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.1
Q ss_pred cchHHHHhhh-CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 177 RDIDLVMTQA-GVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 177 eDIeLVmeQa-gvSRekAvkALke~nGDIV~AIM~L 211 (213)
+++.++++=. .|++..++.+|+.+|||+=.||-.|
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5788888875 9999999999999999998887554
No 38
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=84.09 E-value=0.8 Score=32.64 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=23.8
Q ss_pred chHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028148 178 DIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVmeQagv-SRekAvkALke~nGDIV~AIM~L 211 (213)
-|..++ ..|. .|...++||+.++|||-.||=.|
T Consensus 22 ql~qL~-~MGF~d~~an~~AL~at~Gnve~Ave~L 55 (67)
T 2dna_A 22 EMECLQ-AMGFVNYNANLQALIATDGDTNAAIYKL 55 (67)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 344444 3575 55666999999999998888655
No 39
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.04 E-value=1.2 Score=31.14 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.7
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
-|.--|.-|||++..|+..|..+++|+-.||-.
T Consensus 20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ 52 (66)
T 2dzl_A 20 MINQFVLAAGCAADQAKQLLQAAHWQFETALST 52 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 478888999999999999999999999988754
No 40
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.51 E-value=0.76 Score=31.56 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.4
Q ss_pred hCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028148 186 AGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 186 agv-SRekAvkALke~nGDIV~AIM~L 211 (213)
.|. .+..-++||+.+||+|=.||..|
T Consensus 19 MGF~D~~~N~~aL~~~~gnv~~aI~~L 45 (54)
T 2cp8_A 19 MGFCDRQLNLRLLKKHNYNILQVVTEL 45 (54)
T ss_dssp HTCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 355 99999999999999999999887
No 41
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=82.94 E-value=1.4 Score=29.45 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=24.5
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028148 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSA 207 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke~nGDIV~A 207 (213)
-|...|++ |.||+.|++||--+++||-.|
T Consensus 7 ~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A 35 (46)
T 2oo9_A 7 EIENLMSQ-GYSYQDIQKALVIAQNNIEMA 35 (46)
T ss_dssp HHHHHHHT-TBCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHhhccHHHH
Confidence 46666764 999999999999999999665
No 42
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=79.61 E-value=1.6 Score=33.63 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=23.6
Q ss_pred HhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028148 183 MTQAGV-SRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 183 meQagv-SRekAvkALke~nGDIV~AIM~L 211 (213)
+...|. .|..+++||+.++|||=.||=.|
T Consensus 73 L~eMGF~d~~~ni~AL~~t~Gdve~AVe~L 102 (108)
T 2cwb_A 73 LRDMGIQDDELSLRALQATGGDIQAALELI 102 (108)
T ss_dssp HHTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 344687 56899999999999998887655
No 43
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=78.22 E-value=1.6 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=23.8
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028148 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke~nGDIV~AI 208 (213)
-|+.++ ..|.+|..|++||..+++|+=.|.
T Consensus 7 aI~rL~-~mGF~~~~a~~Al~a~~~n~e~A~ 36 (47)
T 1dv0_A 7 AIERLK-ALGFPESLVIQAYFACEKNENLAA 36 (47)
T ss_dssp HHTTTT-TTTCCHHHHHHHHTTTTSCHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence 344444 459999999999999999987664
No 44
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.76 E-value=3.2 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.1
Q ss_pred chHHHHhhhC-CCHHHHHHHHHhcCCcHHHHHhh
Q 028148 178 DIDLVMTQAG-VSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 178 DIeLVmeQag-vSRekAvkALke~nGDIV~AIM~ 210 (213)
-|.--|.=|| ++...|+..|..||+||-.||-.
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ 54 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQD 54 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4777788899 99999999999999999988754
No 45
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=74.38 E-value=3.3 Score=27.18 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=27.6
Q ss_pred chHHHHhhhCCCH-HHHHHHHHhcCCcHHHHHhh
Q 028148 178 DIDLVMTQAGVSR-SKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 178 DIeLVmeQagvSR-ekAvkALke~nGDIV~AIM~ 210 (213)
-|.--.+=||++- ++|+.-|..||.||-.|+-.
T Consensus 8 ~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 8 ILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3455566789995 99999999999999999864
No 46
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=72.94 E-value=0.94 Score=39.32 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=11.6
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~AIM~L 211 (213)
.-...|+..+|||++.|.++|+.++|.+=-||+-+
T Consensus 246 r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 280 (306)
T 1nri_A 246 RAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMI 280 (306)
T ss_dssp HHHHHHHHHSCCCC---------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHH
Confidence 45778999999999999999999999988887654
No 47
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=72.90 E-value=8.5 Score=30.97 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCe-------ecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccc
Q 028148 69 EKKSRKAMLKLGMK-------PVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEA 122 (213)
Q Consensus 69 eKK~rK~mkKLGlk-------~V~gV~rVtIrk~dn~lfvI~~PdVyKspgsdTYvVFGEa 122 (213)
+..+++.|+++|++ +++|+.+|++ ..+ -+|-++.+ .|+|+|..
T Consensus 2 ~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~--~~~--------~~y~~~dg-~~~i~G~l 51 (216)
T 1eej_A 2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT--NSG--------VLYITDDG-KHIIQGPM 51 (216)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE--TTE--------EEEEETTS-CEEEESCE
T ss_pred hHHHHHHHHHcCCceeeeecCCCCCcEEEEE--CCe--------EEEEcCCC-CEEEEeee
Confidence 45678889888986 4677777766 222 24555544 58889873
No 48
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=72.54 E-value=3.3 Score=28.44 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCccchHHHHhhh-CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 174 VEPRDIDLVMTQA-GVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 174 v~eeDIeLVmeQa-gvSRekAvkALke~nGDIV~AIM~L 211 (213)
+.+++|....+-. +++++....+|+.++||+=.||=.|
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~L 46 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSL 46 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888777766 9999999999999999997777655
No 49
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=71.67 E-value=2.5 Score=29.30 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=25.1
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSA 207 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~A 207 (213)
.-|...|++ |.||+.|++||.-++|||--|
T Consensus 9 ~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~A 38 (56)
T 2juj_A 9 SEIENLMSQ-GYSYQDIQKALVIAQNNIEMA 38 (56)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHTTTCSHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhcccHHHH
Confidence 467777764 999999999999999998554
No 50
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=69.07 E-value=4.3 Score=33.43 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=25.9
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke~nGDIV~AIM~L 211 (213)
-|+..+ ..|.+|.+|+.||..+++|+-.|+=.|
T Consensus 166 kV~~l~-~MGf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 166 KIENLC-AMGFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp HHHHHH-TTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 344443 349999999999999999998886544
No 51
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=64.41 E-value=5.4 Score=32.93 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 187 GVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 187 gvSRekAvkALke~nGDIV~AIM~ 210 (213)
++|+++|++||..++||+=.|+-.
T Consensus 74 ~~s~~EAr~Aw~~~~Gd~~~Av~~ 97 (162)
T 4dbg_B 74 AFSCQEARRAWLDRHGNLDEAVEE 97 (162)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred cccHHHHHHHHHHccCChHHHHHH
Confidence 479999999999999999888754
No 52
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.27 E-value=3.6 Score=28.29 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=18.9
Q ss_pred hhCCCHHHHHHHHHhcCCcHHHH
Q 028148 185 QAGVSRSKAVKALKTHNGDIVSA 207 (213)
Q Consensus 185 QagvSRekAvkALke~nGDIV~A 207 (213)
..||+++.|.+||+.++|-=+++
T Consensus 18 eMGFd~erae~Alk~Tg~~Gle~ 40 (54)
T 2cos_A 18 NAGCDQEMAGRALKQTGSRSIEA 40 (54)
T ss_dssp HHHCCHHHHHHHHHHHTSCCHHH
T ss_pred HcCCCHHHHHHHHHHhCcccHHH
Confidence 47999999999999998844443
No 53
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=61.74 E-value=4.5 Score=33.40 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=32.8
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~AIM~Lt 212 (213)
.-+..+|+-....|+..++||..|.||+--||..|+
T Consensus 104 ~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLq 139 (162)
T 4dbg_B 104 RKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQ 139 (162)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHH
Confidence 457788999999999999999999999999999884
No 54
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=60.97 E-value=6.1 Score=30.50 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=20.5
Q ss_pred hhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 184 TQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 184 eQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
...|.++..++|||+.+++| ++++|.
T Consensus 16 ~~MGFp~~~~~kAl~~~g~~-~e~ame 41 (118)
T 4ae4_A 16 VNMGYSYECVLRAMKAAGAN-IEQILD 41 (118)
T ss_dssp HHTTCCHHHHHHHHHHHCSC-HHHHHH
T ss_pred HHcCCCHHHHHHHHHHHCcC-HHHHHH
Confidence 44699999999999999986 555543
No 55
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=58.61 E-value=13 Score=28.80 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=31.1
Q ss_pred ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 176 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 176 eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM~L 211 (213)
.+=|.-.|++++..--..-+||-+|+||+-.|-.-|
T Consensus 14 ~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL 49 (111)
T 3k6g_A 14 IKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFL 49 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHH
Confidence 357888999999999999999999999998875443
No 56
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=51.32 E-value=10 Score=37.71 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=29.8
Q ss_pred CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028148 173 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM 209 (213)
Q Consensus 173 gv~eeDIeLVmeQagvSRekAvkALke~nGDIV~AIM 209 (213)
.++++.|..+.. .|.++..|++||+.++||+-.||=
T Consensus 718 ~~~~e~i~~l~~-mGf~~~~a~~aL~~t~~~~eraid 753 (854)
T 3ihp_A 718 PPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD 753 (854)
T ss_dssp -CCHHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHH
Confidence 356777877654 799999999999999999988873
No 57
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.62 E-value=8.7 Score=28.21 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=19.2
Q ss_pred CCCHHHH-HHHHHhcCCcHHHHHhhhc
Q 028148 187 GVSRSKA-VKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 187 gvSRekA-vkALke~nGDIV~AIM~Lt 212 (213)
|+.-... -.||+..+|||..|+--||
T Consensus 36 GiqD~~~L~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 36 GINDAQILQQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp CCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhccCCHHHHHHHHh
Confidence 4443333 3599999999999998776
No 58
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.70 E-value=19 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 187 GVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 187 gvSRekAvkALke~nGDIV~AIM~L 211 (213)
.++++-...+|+.++|++-.||=.|
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7778888888888888887776544
No 59
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=44.30 E-value=32 Score=23.33 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=28.8
Q ss_pred hHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028148 179 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIME 210 (213)
Q Consensus 179 IeLVmeQagvSRekAvkALke~nGDIV~AIM~ 210 (213)
|..++.|||...+=+.+.|..++-|+=.|+-.
T Consensus 11 v~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 11 LQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 67789999999999999999999999888754
No 60
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=38.78 E-value=6.5 Score=33.97 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=0.0
Q ss_pred hHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028148 179 IDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 179 IeLVmeQagvSRekAvkALke~nGDIV~AI 208 (213)
+-++|-.+|||.++|++.|..++|-|-.||
T Consensus 275 ~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 304 (306)
T 1nri_A 275 LAIMMILSTLSKSEAKVLLERHQGKLRNAL 304 (306)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcHHHHh
Confidence 346777889999999999999999988876
No 61
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=38.75 E-value=27 Score=30.00 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.6
Q ss_pred hhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 185 QAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 185 QagvSRekAvkALke~nGDIV~AIM~L 211 (213)
+-|.+|..|+.||..+|+|+-.|+=.|
T Consensus 224 ~mgf~~~~~~~al~~~nWd~~~A~e~L 250 (253)
T 3e46_A 224 AAGFDRNAVIVALSSKSWDVETATELL 250 (253)
T ss_dssp HTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 349999999999999999998887554
No 62
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=36.96 E-value=15 Score=33.27 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=26.2
Q ss_pred chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke~nGDIV~AIM~L 211 (213)
-|.-+| ..|.+|+.+++||+.++||+=.|+=-|
T Consensus 171 ~i~~l~-~MGf~~~~~~~AL~a~~nn~~~A~e~L 203 (368)
T 1oqy_A 171 MLTEIM-SMGYERERVVAALRASYNNPHRAVEYL 203 (368)
T ss_dssp HHHHHH-TTTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred HHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 354444 469999999999999999998776544
No 63
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=36.22 E-value=14 Score=29.70 Aligned_cols=41 Identities=12% Similarity=0.403 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCe-------ecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccc
Q 028148 71 KSRKAMLKLGMK-------PVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEA 122 (213)
Q Consensus 71 K~rK~mkKLGlk-------~V~gV~rVtIrk~dn~lfvI~~PdVyKspgsdTYvVFGEa 122 (213)
.+++.|.++|++ +++|+-+|++ . ..-+|-++.+ .|+|+|..
T Consensus 4 ~~~~~l~~~~~~v~~v~~~~~~Gl~~v~~--~--------~~~~y~~~dg-~~~i~G~l 51 (211)
T 1t3b_A 4 AIKRKLQSFNISNIVIKSSPISGIKTAVT--D--------QGILYVSEDG-KYLFEGKL 51 (211)
T ss_dssp TTHHHHHTTTCCSCCCCBCSSTTEECCEE--T--------TEECEEESSS-SCEECSCC
T ss_pred HHHHHHHHcCCceeeeecCCCCCeEEEEE--C--------CEEEEEcCCC-CEEEEeeE
Confidence 356778888876 3556655555 1 2234555544 58889873
No 64
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=32.78 E-value=24 Score=29.79 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.9
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhc
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTH 200 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~ 200 (213)
.=|.++|.|.|||.++|+..+.+-
T Consensus 243 N~V~~~m~~~g~s~eeA~~~~~~~ 266 (320)
T 3bny_A 243 TSVQILAQEADVTAEAAKRVLFVM 266 (320)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHH
Confidence 569999999999999999888653
No 65
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=30.11 E-value=53 Score=22.20 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=28.7
Q ss_pred hHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028148 179 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 211 (213)
Q Consensus 179 IeLVmeQagvSRekAvkALke~nGDIV~AIM~L 211 (213)
|..++.|||...+=+.+.|..|+=|.=.||-..
T Consensus 10 v~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F 42 (57)
T 2jp7_A 10 LNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF 42 (57)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 667889999999999999999999988887543
No 66
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=29.55 E-value=44 Score=23.21 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.8
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke 199 (213)
||..+...-||||++...+|+.
T Consensus 27 dI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp EHHHHHHHHCCCHHHHHHHHHH
T ss_pred eHHHHHHHhCCCHHHHHHHHHH
Confidence 8999999999999999999985
No 67
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=29.53 E-value=29 Score=28.78 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=21.0
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhc
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTH 200 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~ 200 (213)
.=|.++|.|.|||.++|+..+.+-
T Consensus 229 n~V~~~m~~~g~s~eeA~~~~~~~ 252 (300)
T 1di1_A 229 SAVKVLAEESKLGIPATKRVLWSM 252 (300)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHH
Confidence 579999999999999999888653
No 68
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=34.80 E-value=12 Score=29.79 Aligned_cols=20 Identities=50% Similarity=0.586 Sum_probs=17.0
Q ss_pred HHHHHHhcCCcHHHHHhhhc
Q 028148 193 AVKALKTHNGDIVSAIMELT 212 (213)
Q Consensus 193 AvkALke~nGDIV~AIM~Lt 212 (213)
-.+|||.+||||..|+--||
T Consensus 37 L~~ALkAsnGdl~qAV~~LT 56 (129)
T 2lva_A 37 LHEALKASNGDITQAVSLLT 56 (129)
Confidence 35799999999999987776
No 69
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=27.83 E-value=43 Score=25.04 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.5
Q ss_pred HHHHhhhCCCHHHHHHHHHh
Q 028148 180 DLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 180 eLVmeQagvSRekAvkALke 199 (213)
.-++++.||||.-.++||+.
T Consensus 42 r~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 42 REFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999875
No 70
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=27.57 E-value=45 Score=24.29 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=18.5
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke 199 (213)
-+.-++++.||||.-+++||..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~ 56 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQS 56 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999999998864
No 71
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.07 E-value=50 Score=25.19 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=30.4
Q ss_pred ccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCc
Q 028148 170 DETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGD 203 (213)
Q Consensus 170 de~gv~eeDIeLVmeQagvSRekAvkALke~nGD 203 (213)
+-+|++++.+......++-.-++|+..|.+..+|
T Consensus 48 EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 48 DITGKNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred HhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3469999999999999999999999999987654
No 72
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=25.85 E-value=44 Score=28.36 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.3
Q ss_pred CccchHHHHhhhCCCHHHHHHHHHh
Q 028148 175 EPRDIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 175 ~eeDIeLVmeQagvSRekAvkALke 199 (213)
-..=|..+|.|.|||.++|+..+.+
T Consensus 233 ~~n~V~~~m~~~g~s~eeA~~~v~~ 257 (337)
T 1ps1_A 233 QNNMVMILRREHGWSKSRSVSHMQN 257 (337)
T ss_dssp CCSHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHH
Confidence 3467899999999999999988755
No 73
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=25.22 E-value=63 Score=20.11 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=17.1
Q ss_pred cchHHHHhhhCCCHHHHHH-HHH
Q 028148 177 RDIDLVMTQAGVSRSKAVK-ALK 198 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvk-ALk 198 (213)
+-++..+.+.|+|+++.++ ||.
T Consensus 22 ~~l~~~a~~~g~s~s~~ir~ai~ 44 (55)
T 2k9i_A 22 DRLMEIAKEKNLTLSDVCRLAIK 44 (55)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 3577788888999999887 444
No 74
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=25.17 E-value=41 Score=27.05 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCCCccCcCHHHHHHHHHHcCCe------ecCCceEEEEEec
Q 028148 60 GGSSKQSRSEKKSRKAMLKLGMK------PVTGVSRVTIKRT 95 (213)
Q Consensus 60 ~~~~k~sr~eKK~rK~mkKLGlk------~V~gV~rVtIrk~ 95 (213)
.-+++.++.|..++++|..+|++ .++|+--+++.+.
T Consensus 15 ~iR~~~T~pE~~lr~~L~~~G~rfR~q~~~lpg~pDfv~~~~ 56 (155)
T 1cw0_A 15 AIATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEY 56 (155)
T ss_dssp TCCSSSCHHHHHHHHHHHHTTCCCEECCTTSTTCCSEEEGGG
T ss_pred HhhcCCCcHHHHHHHHHHHCCCeEEEeCCCCCCcccEEcccC
Confidence 34567888999999999999997 2566555555443
No 75
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=23.83 E-value=57 Score=24.22 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=18.8
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke 199 (213)
-+.-++.+.||||.-+++||..
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~ 60 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQE 60 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999999999875
No 76
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=23.73 E-value=73 Score=19.10 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.0
Q ss_pred chHHHHhhhCCCHHHHHH-HHH
Q 028148 178 DIDLVMTQAGVSRSKAVK-ALK 198 (213)
Q Consensus 178 DIeLVmeQagvSRekAvk-ALk 198 (213)
-++-.+.+.|+||++.++ ||.
T Consensus 16 ~Ld~~a~~~g~srS~~ir~ai~ 37 (45)
T 2cpg_A 16 NLEKMAREMGLSKSAMISVALE 37 (45)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHH
Confidence 467788899999999987 444
No 77
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=23.46 E-value=84 Score=25.76 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=24.9
Q ss_pred cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028148 177 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI 208 (213)
Q Consensus 177 eDIeLVmeQagvSRekAvkALke~nGDIV~AI 208 (213)
+-|+-+++ .|.+|..||+||..++++.--|.
T Consensus 132 eaI~rL~~-mGF~r~~viqA~~ac~knee~Aa 162 (171)
T 2qsf_X 132 QAISRLCE-LGFERDLVIQVYFACDKNEEAAA 162 (171)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence 34666664 49999999999999999986554
No 78
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=23.45 E-value=60 Score=23.58 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.5
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke 199 (213)
-+.-++++.||||.-+++||+.
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~ 66 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRK 66 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3556899999999999999875
No 79
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=22.49 E-value=42 Score=28.31 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCeecCCceEEEEE-----ecC-ceEEEecCC----eE---EeeCCCceEEEeccce
Q 028148 69 EKKSRKAMLKLGMKPVTGVSRVTIK-----RTK-NILFFISKP----DV---FKSPNSETYVIFGEAK 123 (213)
Q Consensus 69 eKK~rK~mkKLGlk~V~gV~rVtIr-----k~d-n~lfvI~~P----dV---yKspgsdTYvVFGEak 123 (213)
.++++++|++|+.++|.++...++. .+. +..+-+..- +| |.+-+..|||.+|.|=
T Consensus 144 ~~~~~~~l~~l~A~~vE~~~e~~~vSiSaYs~~~~~~i~~~~~k~NlqvAlR~~~~~~kT~I~iGTPI 211 (216)
T 2fpn_A 144 QKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEYIMTSKHKMNLQIALRSAGMGGKHTVTVGTPI 211 (216)
T ss_dssp HHHHHHHHHHHC---CCCCCBTTEEEEEECCTTSSCCEEETTEEECEEEEEEC------CEEEEESSC
T ss_pred HHHHHHHHHHcCCeeeeeeccccEEEEEEEChhhhhHhhcCCeEEEEEEEEEecCCCCcEEEEEecce
Confidence 6888999999999988777643332 111 001112111 22 3346677999999763
No 80
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=20.96 E-value=68 Score=24.15 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=18.6
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke 199 (213)
-+.-++++.||||.-.++||+.
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3567899999999999999875
No 81
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.43 E-value=73 Score=23.74 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=18.5
Q ss_pred chHHHHhhhCCCHHHHHHHHHh
Q 028148 178 DIDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 178 DIeLVmeQagvSRekAvkALke 199 (213)
-+.-++++.||||.-.++||..
T Consensus 37 se~~La~~~~vSr~tvr~Al~~ 58 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKE 58 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3566899999999999999874
No 82
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=20.07 E-value=60 Score=26.70 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=17.9
Q ss_pred hHHHHhhhCCCHHHHHHHHHh
Q 028148 179 IDLVMTQAGVSRSKAVKALKT 199 (213)
Q Consensus 179 IeLVmeQagvSRekAvkALke 199 (213)
..-.+++.||||..+++||..
T Consensus 36 e~~La~~~~vSr~tvr~Al~~ 56 (236)
T 3edp_A 36 ETALQEIYSSSRTTIRRAVDL 56 (236)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 346799999999999999864
Done!