Citrus Sinensis ID: 028149

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPVS
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccc
ccccHHHEEEcccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccc
MEGKEEDVRLGankfaerqpigtaaqtqdgkdyvepppaplfepgelkswsFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTagisgghinpaVTLGLFLARKLSLTRALFYMVMQCLGAICgagvvkgfmgagqygrlagganvvahgytkgdglgaEIIGTFVLVYTVFSatdakrsardshvpvs
megkeedvrlgankfaerqpigtaaqtqdgkdyVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAtdakrsardshvpvs
MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPVS
********************************************GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA***************
*****ED******************************PAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR**HVPVS
********RLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATD*************
*******V**********************KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATD*************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query213 2.2.26 [Sep-21-2011]
Q7XSQ9288 Probable aquaporin PIP1-2 yes no 0.990 0.732 0.867 1e-103
Q9XF59289 Aquaporin PIP1-2 OS=Zea m N/A no 0.990 0.730 0.849 1e-101
P25794289 Probable aquaporin PIP-ty N/A no 0.995 0.733 0.840 1e-101
Q6EU94289 Aquaporin PIP1-1 OS=Oryza no no 0.990 0.730 0.845 1e-101
Q39196287 Probable aquaporin PIP1-4 yes no 0.985 0.731 0.849 1e-100
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 0.990 0.732 0.844 1e-100
Q08451286 Probable aquaporin PIP-ty N/A no 0.976 0.727 0.843 1e-100
Q06611286 Aquaporin PIP1-2 OS=Arabi no no 0.981 0.730 0.834 4e-99
Q9AQU5292 Aquaporin PIP1-3/PIP1-4 O N/A no 0.990 0.722 0.837 6e-97
Q9SXF8288 Aquaporin PIP 1-3 OS=Oryz no no 0.990 0.732 0.820 3e-96
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function desciption
 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/212 (86%), Positives = 194/212 (91%), Gaps = 1/212 (0%)

Query: 1   MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
           MEGKEEDVRLGANKF+ERQPIGTAAQ  D KDY EPPPAPLFEPGELKSWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 60

Query: 61  IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
           +ATFLFLYI+VLTVMGV  S +KC+TVGIQGIAW+FGGMIF LVYCTAGISGGHINPAVT
Sbjct: 61  MATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
            GLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF   G Y    GGANVVA GYTKGDG
Sbjct: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ-KGLYETTGGGANVVAPGYTKGDG 179

Query: 181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPV 212
           LGAEI+GTF+LVYTVFSATDAKR+ARDSHVP+
Sbjct: 180 LGAEIVGTFILVYTVFSATDAKRNARDSHVPI 211
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9XF59|PIP12_MAIZE Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 Back     alignment and function description
>sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9AQU5|PIP13_MAIZE Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXF8|PIP13_ORYSJ Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
300793590288 TPA_inf: aquaporin PIP1;7 [Gossypium hir 0.995 0.736 0.886 1e-107
256568419288 PIP protein [Gossypium hirsutum] gi|2565 0.995 0.736 0.882 1e-106
255571847287 Aquaporin PIP1.3, putative [Ricinus comm 0.995 0.738 0.896 1e-105
255571849288 Aquaporin PIP1.3, putative [Ricinus comm 0.995 0.736 0.896 1e-105
219523020287 plasma membrane intrinsic protein 1 [Pop 0.995 0.738 0.877 1e-105
378408539290 plasma intrinsic protein PIP1.1 [Heliant 0.995 0.731 0.873 1e-104
57336888278 putative plasma membrane intrinsic prote 0.995 0.762 0.872 1e-104
335954641289 plasma membrane intrinsic protein 1 [Jat 0.995 0.733 0.886 1e-104
224101113287 aquaporin, MIP family, PIP subfamily [Po 0.995 0.738 0.872 1e-104
238814670290 plasma intrinsic protein 1;2 [Juglans re 0.995 0.731 0.887 1e-104
>gi|300793590|tpg|DAA33861.1| TPA_inf: aquaporin PIP1;7 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/212 (88%), Positives = 197/212 (92%)

Query: 1   MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
           MEGKEEDVRLGANKF+ERQPIGTAAQ+QD KDY EPPPAPLFEP EL SWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQSQDDKDYTEPPPAPLFEPSELTSWSFYRAGIAEF 60

Query: 61  IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
           +ATFLFLYISVLTVMGV+K  TKC+TVGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT
Sbjct: 61  VATFLFLYISVLTVMGVLKDKTKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
            GLFL RKLSLTRA+FYMVMQCLGAICGAGVVKGFMG  +YG L GGAN V HGYTKGDG
Sbjct: 121 FGLFLGRKLSLTRAIFYMVMQCLGAICGAGVVKGFMGKTRYGALGGGANSVNHGYTKGDG 180

Query: 181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPV 212
           LGAEI+GTFVLVYTVFSATDAKRSARDSHVP+
Sbjct: 181 LGAEIVGTFVLVYTVFSATDAKRSARDSHVPI 212

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|256568419|gb|ACU87553.1| PIP protein [Gossypium hirsutum] gi|256568421|gb|ACU87554.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255571847|ref|XP_002526866.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|223533765|gb|EEF35497.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255571849|ref|XP_002526867.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|38198152|emb|CAE53882.1| aquaporin [Ricinus communis] gi|223533766|gb|EEF35498.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|219523020|gb|ACL14797.1| plasma membrane intrinsic protein 1 [Populus alba x Populus tremula var. glandulosa] Back     alignment and taxonomy information
>gi|378408539|gb|AFB83065.1| plasma intrinsic protein PIP1.1 [Helianthemum almeriense] Back     alignment and taxonomy information
>gi|57336888|emb|CAH60719.1| putative plasma membrane intrinsic protein [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|335954641|gb|AEH76327.1| plasma membrane intrinsic protein 1 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224101113|ref|XP_002312147.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118489357|gb|ABK96483.1| unknown [Populus trichocarpa x Populus deltoides] gi|222851967|gb|EEE89514.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|238814670|gb|ACR56611.1| plasma intrinsic protein 1;2 [Juglans regia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.985 0.731 0.849 1.3e-93
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.985 0.731 0.849 1.6e-93
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.981 0.730 0.844 1.5e-92
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.981 0.730 0.839 5e-92
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.981 0.694 0.834 6.3e-92
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.896 0.682 0.734 1.8e-71
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.854 0.654 0.754 8e-69
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.910 0.675 0.678 5.8e-66
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.849 0.635 0.702 3.2e-65
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.882 0.650 0.664 1.1e-64
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 180/212 (84%), Positives = 191/212 (90%)

Query:     1 MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
             MEGKEEDV +GANKF ERQPIGTAAQT+  KDY EPPPAP FEPGELKSWSFYRAGIAEF
Sbjct:     1 MEGKEEDVNVGANKFPERQPIGTAAQTES-KDYKEPPPAPFFEPGELKSWSFYRAGIAEF 59

Query:    61 IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
             IATFLFLY++VLTVMGV ++   C++VGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT
Sbjct:    60 IATFLFLYVTVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 119

Query:   121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
              GLFLARKLSLTRALFY+VMQCLGAICGAGVVKGF   G Y    GGANVVAHGYTKG G
Sbjct:   120 FGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQ-PGLYQTNGGGANVVAHGYTKGSG 178

Query:   181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPV 212
             LGAEI+GTFVLVYTVFSATDAKRSARDSHVP+
Sbjct:   179 LGAEIVGTFVLVYTVFSATDAKRSARDSHVPI 210
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;RCA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006096 "glycolysis" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XSQ9PIP12_ORYSJNo assigned EC number0.86790.99060.7326yesno
Q9AQU5PIP13_MAIZENo assigned EC number0.83790.99060.7226N/Ano
Q9AR14PIP15_MAIZENo assigned EC number0.84430.99060.7326N/Ano
Q08451PIP1_SOLLCNo assigned EC number0.84360.97650.7272N/Ano
P61838PIP11_VICFANo assigned EC number0.83960.98120.7307N/Ano
P42767PIP1_ATRCANo assigned EC number0.73510.86380.6524N/Ano
Q9ATN0PIP16_MAIZENo assigned EC number0.77880.96710.6959N/Ano
Q39196PIP14_ARATHNo assigned EC number0.84900.98590.7317yesno
Q41870PIP11_MAIZENo assigned EC number0.82070.98590.7317N/Ano
Q9XF59PIP12_MAIZENo assigned EC number0.84970.99060.7301N/Ano
Q08733PIP13_ARATHNo assigned EC number0.84430.98120.7307yesno
P25794PIP2_PEANo assigned EC number0.84030.99530.7335N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.70370.84970.6306N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0049030302
aquaporin, MIP family, PIP subfamily (287 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
pfam00230218 pfam00230, MIP, Major intrinsic protein 1e-63
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 6e-46
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 4e-41
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-26
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 5e-18
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-17
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 6e-16
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-15
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 2e-13
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-09
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 2e-07
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-07
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 5e-06
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-05
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 7e-05
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  195 bits (499), Expect = 1e-63
 Identities = 80/166 (48%), Positives = 103/166 (62%), Gaps = 7/166 (4%)

Query: 46  ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
           EL+S SF+RA IAEF+AT LF++  V + +GV K        G+  +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKL-----YGGLLAVALAFGLALFTLVY 55

Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
           CT  ISG H+NPAVT  L + R++SL RA++Y++ Q LGAICGA ++KG     Q  R  
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNGLQ--RAG 113

Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVP 211
           G AN +A G   G     EII TF LVYTVF+ TD  R+    HV 
Sbjct: 114 GFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHVA 159

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 213
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.98
PTZ00016294 aquaglyceroporin; Provisional 99.97
PLN00184296 aquaporin NIP1; Provisional 99.97
PLN00167256 aquaporin TIP5; Provisional 99.96
PLN00182283 putative aquaporin NIP4; Provisional 99.96
PLN00026298 aquaporin NIP; Provisional 99.96
PRK05420231 aquaporin Z; Provisional 99.96
PLN00166250 aquaporin TIP2; Provisional 99.96
PLN00027252 aquaporin TIP; Provisional 99.96
PLN00183274 putative aquaporin NIP7; Provisional 99.95
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.95
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.94
PLN00182283 putative aquaporin NIP4; Provisional 99.88
PLN00026298 aquaporin NIP; Provisional 99.86
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.85
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.85
PLN00183274 putative aquaporin NIP7; Provisional 99.85
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.83
PLN00184296 aquaporin NIP1; Provisional 99.82
PLN00166250 aquaporin TIP2; Provisional 99.79
PRK05420231 aquaporin Z; Provisional 99.78
PLN00027252 aquaporin TIP; Provisional 99.78
PTZ00016294 aquaglyceroporin; Provisional 99.75
PLN00167256 aquaporin TIP5; Provisional 99.75
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.74
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.72
KOG0224316 consensus Aquaporin (major intrinsic protein famil 99.19
PRK10805285 formate transporter; Provisional 80.72
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-34  Score=243.46  Aligned_cols=161  Identities=28%  Similarity=0.447  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhcc
Q 028149           49 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARK  128 (213)
Q Consensus        49 ~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~  128 (213)
                      .+++.|++++||+||++|++++++++++...++..  ...+..+.++||+.+++.+|+.+++||||+|||||+++++.|+
T Consensus        28 ~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~--~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~  105 (316)
T KOG0224|consen   28 RNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGT--GGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGR  105 (316)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCC--CCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcC
Confidence            34789999999999999999999988877665432  3345677889999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCc--------------ccccCCCChhHHHHHHHHHHHHHHHH
Q 028149          129 LSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGA--------------NVVAHGYTKGDGLGAEIIGTFVLVYT  194 (213)
Q Consensus       129 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~E~i~T~~L~~~  194 (213)
                      ++|.|.++|+++|++||++|++.+|.+| .+.++.+.++.              +.+.|..+.+++|+.|+++|.+|+.+
T Consensus       106 ~p~~k~p~Y~~aQ~iGAF~gaa~~y~~y-~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p~ls~~n~F~DqfigTa~L~~~  184 (316)
T KOG0224|consen  106 LPWKKFPVYVLAQFIGAFLGAATVYGLY-YDAINEFDGGNRTVTGPKATAGIFATYPAPHLSLWNGFFDQFIGTAMLVLC  184 (316)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCceEecCCccceEEEeecCchHhhhhHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999 66655544332              23456789999999999999999999


Q ss_pred             HHHHccCCCCCCCCCCCC
Q 028149          195 VFSATDAKRSARDSHVPV  212 (213)
Q Consensus       195 il~~~d~~~~~~~~~~p~  212 (213)
                      +++++|+||+.+.+..|+
T Consensus       185 l~aI~D~rN~~p~g~~p~  202 (316)
T KOG0224|consen  185 LFAITDKRNPIPTGLHPL  202 (316)
T ss_pred             eeEEecCCCCCCcchhHH
Confidence            999999999877777665

>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
2b5f_A 303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-77
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-77
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-77
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-76
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-76
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 6e-25
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 2e-24
2d57_A 301 Double Layered 2d Crystal Structure Of Aquaporin-4 8e-22
3iyz_A 340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 2e-21
2zz9_A 301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 2e-21
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 1e-20
3d9s_A 266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 9e-18
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 6e-16
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 8e-16
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 4e-14
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-13
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 4e-08
1ldf_A 281 Crystal Structure Of The E. Coli Glycerol Facilitat 3e-07
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 3e-07
1fx8_A 281 Crystal Structure Of The E. Coli Glycerol Facilitat 4e-07
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 9e-07
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 1e-06
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-06
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 1e-06
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 1e-06
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 5e-06
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 5e-06
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 5e-05
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 1e-04
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-04
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  284 bits (727), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/189 (74%), Positives = 153/189 (80%), Gaps = 1/189 (0%)
Query: 24  AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
           A   Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G  K    
Sbjct: 9   AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84  CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
           C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69  CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
           GAICG G+VK FM  G Y +  GGAN VA GY KG  LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPV 212
           SARDSHVP+
Sbjct: 188 SARDSHVPI 196
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 9e-90
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 4e-78
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 8e-69
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 7e-68
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 9e-67
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-65
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-65
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-64
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 8e-64
2o9g_A234 Aquaporin Z; integral membrane protein, structural 4e-62
2o9g_A234 Aquaporin Z; integral membrane protein, structural 7e-04
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 8e-48
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 7e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 4e-31
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-28
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 1e-04
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  265 bits (678), Expect = 9e-90
 Identities = 141/197 (71%), Positives = 155/197 (78%), Gaps = 2/197 (1%)

Query: 17  ERQPIGTAAQT-QDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVM 75
             + +   AQ  Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+
Sbjct: 24  MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83

Query: 76  GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRAL 135
           G  K    C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL
Sbjct: 84  GHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRAL 143

Query: 136 FYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTV 195
            YM+ QCLGAICG G+VK FM  G Y +  GGAN VA GY KG  LGAEIIGTFVLVYTV
Sbjct: 144 VYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTV 202

Query: 196 FSATDAKRSARDSHVPV 212
           FSATD KRSARDSHVP+
Sbjct: 203 FSATDPKRSARDSHVPI 219
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.98
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.98
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.88
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.83
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.83
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.83
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.82
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.81
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.81
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.81
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.8
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.79
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.79
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.76
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.75
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=6e-38  Score=269.35  Aligned_cols=178  Identities=76%  Similarity=1.288  Sum_probs=141.2

Q ss_pred             cccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcC
Q 028149           30 GKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG  109 (213)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~  109 (213)
                      .|++.++++.+..+.++..+++++|++++||+||++|+|++++++........+....+++.++++||+.+++.+|++++
T Consensus        38 ~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~  117 (304)
T 3cn5_A           38 GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG  117 (304)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeec
Confidence            47888877777778888889999999999999999999999998876544333334567888999999999999999999


Q ss_pred             CCCcccchhhHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHH
Q 028149          110 ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF  189 (213)
Q Consensus       110 iSG~hlNPAvTla~~~~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~  189 (213)
                      +||+|+|||||+++++.|+++|.+.+.||++|++||++|+.+++.++ ++.++..+.+.+.+.++.+..++|+.|+++||
T Consensus       118 iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~-~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf  196 (304)
T 3cn5_A          118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTF  196 (304)
T ss_dssp             TTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCcccccCCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 55555555555566778899999999999999


Q ss_pred             HHHHHHHHHccCCCCCCCC
Q 028149          190 VLVYTVFSATDAKRSARDS  208 (213)
Q Consensus       190 ~L~~~il~~~d~~~~~~~~  208 (213)
                      +|+++|+.++|+||..+++
T Consensus       197 iLv~~Il~~~d~~~~~~~~  215 (304)
T 3cn5_A          197 VLVYTVFSATDPKRSARDS  215 (304)
T ss_dssp             HHHHHHHHTEEEEEESTTS
T ss_pred             HHHHHHhheecCccCCCCc
Confidence            9999999999877655444
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 213
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 5e-36
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-04
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 4e-31
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 2e-24
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 4e-04
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 6e-21
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (313), Expect = 5e-36
 Identities = 64/170 (37%), Positives = 92/170 (54%), Gaps = 6/170 (3%)

Query: 46  ELKSWSFYRAGIAEFIATFLFLYISVLTVMG----VVKSNTKCSTVGIQGIAWAFGGMIF 101
           E K   F+RA +AEF+A  LF++IS+ + +G    +  + T  +      ++ AFG  I 
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 102 VLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQY 161
            L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +   
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123

Query: 162 GRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVP 211
             L  G N +A G   G GLG EIIGT  LV  V + TD +R       P
Sbjct: 124 NSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGP 171
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.97
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.97
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.79
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.78
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.77
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.75
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.5e-33  Score=228.59  Aligned_cols=153  Identities=31%  Similarity=0.473  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCccchhHHHHHHHHHHHHHHHhhcCCCCcccchhhHHHHHhhccC
Q 028149           50 WSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKL  129 (213)
Q Consensus        50 ~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~v~~~i~~~~~iSG~hlNPAvTla~~~~g~~  129 (213)
                      .++||++++||+||++++|++++++.....     ...+.+.+++++|+.+++.+++++++||||+|||||+++++.|++
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~-----~~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i   76 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAP-----GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQM   76 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC------CHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCC
Confidence            368999999999999999999987654322     234567789999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 028149          130 SLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSH  209 (213)
Q Consensus       130 ~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~T~~L~~~il~~~d~~~~~~~~~  209 (213)
                      +|++.+.|+++|++||++|+++++.++ ++..+. ........|+.+..++++.|+++|++|+++++.+.|+|++.....
T Consensus        77 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~  154 (234)
T d1ymga1          77 SLLRAICYMVAQLLGAVAGAAVLYSVT-PPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGS  154 (234)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTTCT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCC
T ss_pred             ChhheeeeeehHHHHHHHHHHHHHHHc-Cccccc-cccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcc
Confidence            999999999999999999999999999 443332 223345567889999999999999999999999999887665544
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure