Query 028150
Match_columns 213
No_of_seqs 113 out of 281
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:01:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2886 Uncharacterized conser 100.0 1.3E-44 2.7E-49 296.5 17.4 177 36-213 32-208 (209)
2 PF13664 DUF4149: Domain of un 99.9 1.7E-23 3.7E-28 157.8 10.9 100 47-148 1-100 (101)
3 PF08592 DUF1772: Domain of un 95.7 0.7 1.5E-05 35.7 14.3 131 54-202 1-137 (139)
4 PF10027 DUF2269: Predicted in 95.6 0.9 2E-05 36.3 17.5 43 39-82 1-43 (150)
5 COG1276 PcoD Putative copper e 93.6 2.1 4.6E-05 38.4 12.8 104 36-142 141-251 (289)
6 TIGR00245 conserved hypothetic 69.3 79 0.0017 27.7 13.5 45 115-159 116-162 (248)
7 COG4605 CeuC ABC-type enteroch 63.7 1E+02 0.0022 28.1 10.3 74 67-140 151-243 (316)
8 PF01595 DUF21: Domain of unkn 43.7 1.1E+02 0.0025 24.2 6.9 35 173-207 43-77 (183)
9 TIGR00328 flhB flagellar biosy 43.1 2.7E+02 0.0059 25.6 12.3 46 16-61 105-157 (347)
10 COG5615 Predicted integral mem 42.1 1E+02 0.0022 25.2 6.2 52 43-94 11-63 (161)
11 TIGR00892 2A0113 monocarboxyla 40.5 2.2E+02 0.0048 26.2 9.2 13 71-83 362-374 (455)
12 PF05425 CopD: Copper resistan 34.3 1.9E+02 0.0041 21.3 7.3 56 119-201 48-103 (105)
13 COG3030 FxsA Protein affecting 32.5 2.8E+02 0.0062 22.8 9.8 89 40-148 20-112 (158)
14 PF13038 DUF3899: Domain of un 31.1 2E+02 0.0044 20.7 8.6 31 172-202 58-88 (92)
15 PF10361 DUF2434: Protein of u 30.9 99 0.0022 28.0 4.9 46 47-92 51-97 (296)
16 PRK05702 flhB flagellar biosyn 30.3 4.4E+02 0.0096 24.3 12.4 50 13-62 109-165 (359)
17 PF03649 UPF0014: Uncharacteri 28.4 4.1E+02 0.0088 23.3 10.8 45 115-159 122-168 (250)
18 PRK12772 bifunctional flagella 25.7 6.7E+02 0.015 24.9 12.4 45 15-60 367-419 (609)
19 PRK12468 flhB flagellar biosyn 24.1 6E+02 0.013 23.8 12.3 47 14-60 110-163 (386)
20 PRK08156 type III secretion sy 23.7 6E+02 0.013 23.6 12.3 46 15-61 99-152 (361)
21 PRK01315 putative inner membra 23.4 5.8E+02 0.013 23.4 11.0 18 129-146 50-67 (329)
22 MTH00025 ATP8 ATP synthase F0 23.2 2.6E+02 0.0055 19.9 5.0 23 131-153 26-48 (70)
23 PRK09108 type III secretion sy 23.1 6E+02 0.013 23.4 12.4 48 13-60 104-158 (353)
24 PF13172 PepSY_TM_1: PepSY-ass 23.0 1.8E+02 0.0038 17.2 4.7 30 179-208 2-31 (34)
25 PRK06298 type III secretion sy 22.6 6.2E+02 0.013 23.4 12.3 45 16-60 106-157 (356)
26 PF12347 HJURP_C: Holliday jun 20.3 34 0.00074 23.8 0.0 17 172-188 21-37 (64)
27 PRK11633 cell division protein 20.2 51 0.0011 28.7 1.0 21 6-26 8-28 (226)
No 1
>KOG2886 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-44 Score=296.54 Aligned_cols=177 Identities=31% Similarity=0.452 Sum_probs=163.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhh
Q 028150 36 KLSPFLKLAHLLCFSTAWGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSLVGVCCSIAVASFAYLHPWKSSSTAE 115 (213)
Q Consensus 36 ~~~~~~~~~hLL~~s~~~G~~iw~tFV~gpvlfk~LpR~~FG~lQ~kLFP~YF~l~~~~~~v~l~~~~~~~p~~~~~~~~ 115 (213)
.+..+.+++||..++++||+|+|+|||+|.++|++|||||||.+|+||||+||++...|...++...+-.+.+...+..+
T Consensus 32 ~lg~~as~V~L~~ia~afGmqvWvTFVSg~~L~~sLprh~FG~vQskLfP~YF~~~vg~l~~~l~~v~sr~~~~~~t~~e 111 (209)
T KOG2886|consen 32 TLGKMASLVGLGGIAAAFGMQVWVTFVSGYVLASSLPRHQFGVVQSKLFPVYFKANVGILVGLLGHVYSRRRKSGTTASE 111 (209)
T ss_pred CccchhhhHhHHHHHHHhcchhhhHHHhHHHHHHhcchhHHhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 35688999999999999999999999999999999999999999999999999999887777777777777777777889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHhhHHHHHHHHHHHHHhccCCccccccccccccCChHHHHHHHHHHHHHhHHHHHHHH
Q 028150 116 KYQLGFLLSAFAFNLTNLFVFTPMTIEMMKQRHKVEREENIGDEVGWTKNREVAKSNPKLAAMNKKFGMIHGLSSLANIM 195 (213)
Q Consensus 116 ~~q~~~L~~~l~~~l~N~~~l~P~~~~~m~~R~~~E~~~g~G~evg~~~~~~~~~~~~~~~~l~k~F~~~HgiSsllNLv 195 (213)
.+|...|+.++.+.-.|..+++|+++++|+|+++.|||+|.|+|+|.+...|. +++|+|++++++|+++|+.||++|+.
T Consensus 112 ~~Q~~~L~ls~~m~~vna~~l~pr~tkaM~el~k~Eke~G~G~ev~~~~~~~~-v~~pky~~l~e~frrlh~~ss~~Nl~ 190 (209)
T KOG2886|consen 112 MWQMVNLLLSAGMEEVNASFLEPRATKAMFELYKAEKEIGRGGEVGSEVTGEL-VDCPKYQRLSERFRRLHMYSSILNLL 190 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhCCCCCCCCcchhHH-hhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987655443 57899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCC
Q 028150 196 SFGSLAMHSWYLAGKINL 213 (213)
Q Consensus 196 ~l~~~~~~~~~La~~L~~ 213 (213)
+++.+.+|++||++||++
T Consensus 191 ~llS~~l~l~~La~rirl 208 (209)
T KOG2886|consen 191 TLLSLTLHLVYLASRIRL 208 (209)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999864
No 2
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=99.90 E-value=1.7e-23 Score=157.83 Aligned_cols=100 Identities=33% Similarity=0.563 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q 028150 47 LCFSTAWGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSLVGVCCSIAVASFAYLHPWKSSSTAEKYQLGFLLSAF 126 (213)
Q Consensus 47 L~~s~~~G~~iw~tFV~gpvlfk~LpR~~FG~lQ~kLFP~YF~l~~~~~~v~l~~~~~~~p~~~~~~~~~~q~~~L~~~l 126 (213)
+++++|+|+++|+|||++|++||+|||++||++|+|+||.||.++.+|+++.+.+....+. .....++.+.+.+++++
T Consensus 1 L~~~~w~G~~~~~~fvvap~lF~~L~~~~ag~i~~~lFp~y~~~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (101)
T PF13664_consen 1 LLLALWLGSMVFFTFVVAPVLFKALPRQQAGKIQGKLFPKYFYLGLACAAVLLLTSLALHK--GSGNANRWQLLLLLVML 78 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999998887766551 22334577888999999
Q ss_pred HHHHHHHHhhcHhhHHHHHHHH
Q 028150 127 AFNLTNLFVFTPMTIEMMKQRH 148 (213)
Q Consensus 127 ~~~l~N~~~l~P~~~~~m~~R~ 148 (213)
+++++|.++++|+++++|.||+
T Consensus 79 ~~~l~~~~~l~P~~~~l~~~~~ 100 (101)
T PF13664_consen 79 LLTLLNAFYLGPKMNALKDQRE 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999875
No 3
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=95.71 E-value=0.7 Score=35.70 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhccCChhhhhhHhhhhhhHHHHHHHHHH---HHHHHHHHH-hcCCCCCchhhHHHHHHHHHH--HH
Q 028150 54 GAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSLVGVCC---SIAVASFAY-LHPWKSSSTAEKYQLGFLLSA--FA 127 (213)
Q Consensus 54 G~~iw~tFV~gpvlfk~LpR~~FG~lQ~kLFP~YF~l~~~~~---~v~l~~~~~-~~p~~~~~~~~~~q~~~L~~~--l~ 127 (213)
|..+..+++..|.+. .+|.+++-+..+.+++.......... ++.....++ ...... + .....++....+ +.
T Consensus 1 G~~~~~s~~~~P~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~-~~~~~~~~~a~~~~~~ 77 (139)
T PF08592_consen 1 GAFLAFSLVVMPALL-SLPPEEYLKQWQRFYRRGPRFMPPLSLLSALSYLYLAYVALRRRS-R-PAARLLWLAAAALLLS 77 (139)
T ss_pred CeehhhHHHHHHHHH-hCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-cccHHHHHHHHHHHHH
Confidence 445567788888877 77888877777777766533333222 222122222 111110 0 111222222111 11
Q ss_pred HHHHHHHhhcHhhHHHHHHHHHHHHHhccCCccccccccccccCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 028150 128 FNLTNLFVFTPMTIEMMKQRHKVEREENIGDEVGWTKNREVAKSNPKLAAMNKKFGMIHGLSSLANIMSFGSLAM 202 (213)
Q Consensus 128 ~~l~N~~~l~P~~~~~m~~R~~~E~~~g~G~evg~~~~~~~~~~~~~~~~l~k~F~~~HgiSsllNLv~l~~~~~ 202 (213)
....=.++..|.-+++. +.+.++ ++| ..+.++.+++.+|.+++|.+=..+.++++++.++
T Consensus 78 ~~~~T~~~~~P~N~~l~----~~~~~~--~~~---------~~~~~~~~~l~~~W~~~n~vR~~~~~~a~~~~~~ 137 (139)
T PF08592_consen 78 IIPFTFLVNVPINNRLA----AWDIES--SPE---------EAPADWVRALLDRWGRLNLVRTVLSLVAFLLLLI 137 (139)
T ss_pred HHHHHHHHhhHHHHHHH----Hccccc--ccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22244566778765541 111111 011 1122345899999999999999999888877654
No 4
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=95.61 E-value=0.9 Score=36.25 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhHhhh
Q 028150 39 PFLKLAHLLCFSTAWGAALWVTFIGGIIMFKNLPRHQFGNLQSK 82 (213)
Q Consensus 39 ~~~~~~hLL~~s~~~G~~iw~tFV~gpvlfk~LpR~~FG~lQ~k 82 (213)
+++|.+|+++--.++|..+-.. +..+..-++=|-++.......
T Consensus 1 tlL~~lHilaail~~G~~~~~~-~~~~~a~r~~~~~~~~~~~~~ 43 (150)
T PF10027_consen 1 TLLKFLHILAAILLVGPGFVAA-VMMWRARRTGDPEAIARALRA 43 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCHHHHHHHHhH
Confidence 4689999999999999766544 333445555444444333333
No 5
>COG1276 PcoD Putative copper export protein [Inorganic ion transport and metabolism]
Probab=93.61 E-value=2.1 Score=38.44 Aligned_cols=104 Identities=16% Similarity=0.086 Sum_probs=61.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhHhhhhhhHHHHHHHHHHHHHHHHHH-HhcCCCCCchh
Q 028150 36 KLSPFLKLAHLLCFSTAWGAALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSLVGVCCSIAVASFA-YLHPWKSSSTA 114 (213)
Q Consensus 36 ~~~~~~~~~hLL~~s~~~G~~iw~tFV~gpvlfk~LpR~~FG~lQ~kLFP~YF~l~~~~~~v~l~~~~-~~~p~~~~~~~ 114 (213)
.+......+|+++-++|.|+=.-.-+..++ -|.-|++++.++-++ |-.|-.+....-++.=.+.. ..-+..+....
T Consensus 141 ~v~~~~~~lHllaaa~W~GgLl~ll~~~~~--~~~r~~~~a~~~~rR-FS~~~~~aVa~llvsGll~~~~~I~~~~~l~t 217 (289)
T COG1276 141 WVHQTLHFLHLLAAAFWVGGLLPLLLCLAP--DKARPATEAIEVLRR-FSLYGHFAVAVLLVSGLLLNVLLIQGFSPLFT 217 (289)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHhh--ccccCchHHHHHHHH-HHhHHHHHHHHHHHHHHHhHhheecccchhhh
Confidence 567899999999999999988777777666 466677777777666 33332222211111000111 11121111111
Q ss_pred hH------HHHHHHHHHHHHHHHHHHhhcHhhHH
Q 028150 115 EK------YQLGFLLSAFAFNLTNLFVFTPMTIE 142 (213)
Q Consensus 115 ~~------~q~~~L~~~l~~~l~N~~~l~P~~~~ 142 (213)
.. .....+..++..++.|+.++.|+..+
T Consensus 218 T~YGqlLL~K~~Lfv~ml~lal~nr~~L~~~~~~ 251 (289)
T COG1276 218 TAYGQLLLVKLILFVLMLALALANRYRLVPRMRA 251 (289)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 11 23345567888999999999998754
No 6
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=69.27 E-value=79 Score=27.73 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH--hhcHhhHHHHHHHHHHHHHhccCCc
Q 028150 115 EKYQLGFLLSAFAFNLTNLF--VFTPMTIEMMKQRHKVEREENIGDE 159 (213)
Q Consensus 115 ~~~q~~~L~~~l~~~l~N~~--~l~P~~~~~m~~R~~~E~~~g~G~e 159 (213)
+.....++..+.+.+..|.. .++=...+++.+|.++|.....|.+
T Consensus 116 ~p~y~IPl~GMiiGNsM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat 162 (248)
T TIGR00245 116 EPIYVIPLMGMVIGNTMNTISLALNRLISMVKSERDEIQGYLSLGAT 162 (248)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC
Confidence 35667899998988887774 4445555667777777877766654
No 7
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=63.75 E-value=1e+02 Score=28.14 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=40.7
Q ss_pred hhccCChhhhhhHhhhhhhHH-------HHHHHHHHHHHHHHHHHhcCC--------CC----CchhhHHHHHHHHHHHH
Q 028150 67 MFKNLPRHQFGNLQSKMFPAY-------FSLVGVCCSIAVASFAYLHPW--------KS----SSTAEKYQLGFLLSAFA 127 (213)
Q Consensus 67 lfk~LpR~~FG~lQ~kLFP~Y-------F~l~~~~~~v~l~~~~~~~p~--------~~----~~~~~~~q~~~L~~~l~ 127 (213)
+.+-+|..+|..+|+++|--+ ..++...-.+.-+.....++. +. --..++.+-..|....+
T Consensus 151 mq~liDPneF~~lQ~~mFAsFn~int~ll~i~a~i~~~~~v~~~r~~~~LDVl~LgRd~AinLGi~y~k~~~~lL~ivav 230 (316)
T COG4605 151 MQRLIDPNEFAILQARMFASFNNINTELLAIAAIILLVVTVYLFRYRKVLDVLSLGRDTAINLGIDYEKVTKILLLIVAV 230 (316)
T ss_pred HHHHcChHHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHHHHHHHhcchhhcChhhHhhcCcchHHHHHHHHHHHHH
Confidence 445579999999999999763 443333222221222222211 10 01234555455555556
Q ss_pred HHHHHHHhhcHhh
Q 028150 128 FNLTNLFVFTPMT 140 (213)
Q Consensus 128 ~~l~N~~~l~P~~ 140 (213)
...+....++|+|
T Consensus 231 LvsvSTALVGPit 243 (316)
T COG4605 231 LVSVSTALVGPIT 243 (316)
T ss_pred HHHHHHHHhchHH
Confidence 6667777889986
No 8
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=43.73 E-value=1.1e+02 Score=24.19 Aligned_cols=35 Identities=14% Similarity=0.016 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 028150 173 PKLAAMNKKFGMIHGLSSLANIMSFGSLAMHSWYL 207 (213)
Q Consensus 173 ~~~~~l~k~F~~~HgiSsllNLv~l~~~~~~~~~L 207 (213)
....++.++-.+.=....+.|.++.++..+.+-++
T Consensus 43 ~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 43 RRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655555555556666655555554444
No 9
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=43.11 E-value=2.7e+02 Score=25.64 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=25.5
Q ss_pred hhhhccccccCCCCCCCCCC-------cchhHHHHHHHHHHHHHHHHHHHHHH
Q 028150 16 IGVIFSPETFGSKSDGLNSS-------KLSPFLKLAHLLCFSTAWGAALWVTF 61 (213)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~hLL~~s~~~G~~iw~tF 61 (213)
.|.+|+|+.+.-.=...||. +...++.+.--+.--..+|...|..+
T Consensus 105 ~G~~fs~k~l~Pk~~rlNPi~G~KriFS~~~l~el~KsllK~~~i~~v~~~~~ 157 (347)
T TIGR00328 105 FGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVL 157 (347)
T ss_pred hCcccccccCCCChhhcCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889988764211111111 34566666666666666666665443
No 10
>COG5615 Predicted integral membrane protein [Function unknown]
Probab=42.10 E-value=1e+02 Score=25.24 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhhhhhHhhhhhhHHHHHHHHH
Q 028150 43 LAHLLCFSTAWGAALWVTFIGGIIMFKNL-PRHQFGNLQSKMFPAYFSLVGVC 94 (213)
Q Consensus 43 ~~hLL~~s~~~G~~iw~tFV~gpvlfk~L-pR~~FG~lQ~kLFP~YF~l~~~~ 94 (213)
.+|.+.--.|.|+++|.=||.=|-.+|++ +.++-+..-+..+-.++.+..+.
T Consensus 11 ~iHVlaa~iwIGGs~f~w~IlrPas~ka~~~~s~~~~~lg~I~rrF~~wvwat 63 (161)
T COG5615 11 IIHVLAALIWIGGSFFIWFILRPASYKALEDESRRTKILGIIGRRFGWWVWAT 63 (161)
T ss_pred HHHHHHHHHHccceeeEeEEecHhhhhhccCHHHHHHHHHHHHHHhHhHHhhh
Confidence 57999999999999999999999999999 44455666666666555555553
No 11
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=40.51 E-value=2.2e+02 Score=26.20 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=7.1
Q ss_pred CChhhhhhHhhhh
Q 028150 71 LPRHQFGNLQSKM 83 (213)
Q Consensus 71 LpR~~FG~lQ~kL 83 (213)
.|+++.|...+-.
T Consensus 362 ~~~~~~g~~~g~~ 374 (455)
T TIGR00892 362 VGAQRFSSAVGLV 374 (455)
T ss_pred hhHHHHhhHHhHH
Confidence 4566666655443
No 12
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=34.30 E-value=1.9e+02 Score=21.27 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhcHhhHHHHHHHHHHHHHhccCCccccccccccccCChHHHHHHHHHHHHHhHHHHHHHHHHH
Q 028150 119 LGFLLSAFAFNLTNLFVFTPMTIEMMKQRHKVEREENIGDEVGWTKNREVAKSNPKLAAMNKKFGMIHGLSSLANIMSFG 198 (213)
Q Consensus 119 ~~~L~~~l~~~l~N~~~l~P~~~~~m~~R~~~E~~~g~G~evg~~~~~~~~~~~~~~~~l~k~F~~~HgiSsllNLv~l~ 198 (213)
..+++++.+.++.|.+.+.|+..+. +++ +.+...+++.++..+...+-++.++
T Consensus 48 ~~L~~~~l~l~~~~~~~~~p~l~~~-------~~~--------------------~~~~~~~~~~~~~~ie~~l~~~vl~ 100 (105)
T PF05425_consen 48 LALVLLMLALAAYNRFRLIPRLRRA-------APR--------------------DAQAARRRLRRLVRIELILGLAVLA 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------ccc--------------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678889999999999987322 100 1112356899999888888777665
Q ss_pred HHH
Q 028150 199 SLA 201 (213)
Q Consensus 199 ~~~ 201 (213)
...
T Consensus 101 ~aa 103 (105)
T PF05425_consen 101 LAA 103 (105)
T ss_pred HHH
Confidence 443
No 13
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=32.53 E-value=2.8e+02 Score=22.81 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhhHhhhhh----hHHHHHHHHHHHHHHHHHHHhcCCCCCchhh
Q 028150 40 FLKLAHLLCFSTAWGAALWVTFIGGIIMFKNLPRHQFGNLQSKMF----PAYFSLVGVCCSIAVASFAYLHPWKSSSTAE 115 (213)
Q Consensus 40 ~~~~~hLL~~s~~~G~~iw~tFV~gpvlfk~LpR~~FG~lQ~kLF----P~YF~l~~~~~~v~l~~~~~~~p~~~~~~~~ 115 (213)
++.+.+.+-+...++- +..|++.|..+.|+..+.++.++|.++= |.+-.+-.+|-+++ ...
T Consensus 20 fI~Vg~~IG~~~Tl~L-vilt~~~G~~l~r~qG~~~l~~~q~~~~~G~~P~~~ll~g~~~~va--giL------------ 84 (158)
T COG3030 20 FIWVGSVIGVGWTLLL-VILTSVLGALLLRVQGFGTLLRAQAALASGEVPGAELLDGLLLIIA--GIL------------ 84 (158)
T ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHhHHHHHH--HHH------------
Confidence 3444444443333332 2378899999999999999999988763 33444444433321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHhhHHHHHHHH
Q 028150 116 KYQLGFLLSAFAFNLTNLFVFTPMTIEMMKQRH 148 (213)
Q Consensus 116 ~~q~~~L~~~l~~~l~N~~~l~P~~~~~m~~R~ 148 (213)
++.-.+++.++-.+.+-|.+.++..+.-
T Consensus 85 -----Ll~PGFvTd~lGlllliP~~R~~~~~~l 112 (158)
T COG3030 85 -----LLIPGFVTDILGLLLLIPPTRKLFRKKL 112 (158)
T ss_pred -----HHcchHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2223467888888999999988776643
No 14
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=31.13 E-value=2e+02 Score=20.67 Aligned_cols=31 Identities=10% Similarity=-0.053 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 028150 172 NPKLAAMNKKFGMIHGLSSLANIMSFGSLAM 202 (213)
Q Consensus 172 ~~~~~~l~k~F~~~HgiSsllNLv~l~~~~~ 202 (213)
+++.+.-.++..+|+-.--+.+++.++..+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~ll~~~ll~l~~ii 88 (92)
T PF13038_consen 58 DKKLKKEKYRVSRWTYPLLLIGLLLILLSII 88 (92)
T ss_pred hHHHHHhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677777777766777555554443
No 15
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=30.86 E-value=99 Score=28.01 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hccCChhhhhhHhhhhhhHHHHHHH
Q 028150 47 LCFSTAWGAALWVTFIGGIIM-FKNLPRHQFGNLQSKMFPAYFSLVG 92 (213)
Q Consensus 47 L~~s~~~G~~iw~tFV~gpvl-fk~LpR~~FG~lQ~kLFP~YF~l~~ 92 (213)
+.++..+|..+..|.+.=--- -..||.+.-=...++=++-|..+-+
T Consensus 51 I~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv 97 (296)
T PF10361_consen 51 IAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFV 97 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHH
Confidence 455666666666665542111 1225555533444555565655444
No 16
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=30.29 E-value=4.4e+02 Score=24.35 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=27.5
Q ss_pred HHHhhhhccccccCC---CCCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 028150 13 FLAIGVIFSPETFGS---KSDGLNSS----KLSPFLKLAHLLCFSTAWGAALWVTFI 62 (213)
Q Consensus 13 ~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~hLL~~s~~~G~~iw~tFV 62 (213)
++-.|++|+|+.+.- +=++.++- +...++.+.--+.-.+.+|...|..+-
T Consensus 109 ~~Q~G~~fs~k~l~Pk~~rlNPi~G~KriFS~~~l~el~KsllK~~~~~~v~~~~~~ 165 (359)
T PRK05702 109 VLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFVLW 165 (359)
T ss_pred HHhhCcccccccCCCChhhcCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334488899987642 11111111 345666666666666666666665443
No 17
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=28.37 E-value=4.1e+02 Score=23.29 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHH--HhhcHhhHHHHHHHHHHHHHhccCCc
Q 028150 115 EKYQLGFLLSAFAFNLTNL--FVFTPMTIEMMKQRHKVEREENIGDE 159 (213)
Q Consensus 115 ~~~q~~~L~~~l~~~l~N~--~~l~P~~~~~m~~R~~~E~~~g~G~e 159 (213)
+.....++..+.+.+..|. ..+.=.-.+++.+|.++|...+.|.+
T Consensus 122 ~~r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat 168 (250)
T PF03649_consen 122 DPRYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGAT 168 (250)
T ss_pred ChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC
Confidence 4566788888888888776 45556667788888888888877654
No 18
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=25.72 E-value=6.7e+02 Score=24.91 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=23.3
Q ss_pred HhhhhccccccCC----CCCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHH
Q 028150 15 AIGVIFSPETFGS----KSDGLNSS----KLSPFLKLAHLLCFSTAWGAALWVT 60 (213)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~hLL~~s~~~G~~iw~t 60 (213)
-.|.+|+|+.+.- -++ .++- +...++.+..-+.-.+..|...|..
T Consensus 367 q~G~~fs~k~l~P~~~rlNP-i~GlKrlFS~k~l~el~K~l~K~~~i~~~~~~~ 419 (609)
T PRK12772 367 QTGFLFTKEPLKPDLKKLNP-INGFKRMFSMRSVMELLKDLTIITIVGIVGYKF 419 (609)
T ss_pred hcCcccccccCCCCchhcCH-hHhHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488888887631 111 1111 3345666666665555555555443
No 19
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.12 E-value=6e+02 Score=23.79 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHhhhhccccccCC---CCCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHH
Q 028150 14 LAIGVIFSPETFGS---KSDGLNSS----KLSPFLKLAHLLCFSTAWGAALWVT 60 (213)
Q Consensus 14 ~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~hLL~~s~~~G~~iw~t 60 (213)
+=.|++|+|+.+.- +=++.++- +...++.+..-+.--..+|.-.|..
T Consensus 110 ~Q~G~~~s~k~l~P~~~rlNP~~GlKriFS~~~l~el~KsllKv~li~~v~~~~ 163 (386)
T PRK12468 110 LLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVTGLF 163 (386)
T ss_pred HhhCceeccccCCCCchhcCHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33478888887631 11111100 2345666666666555555555544
No 20
>PRK08156 type III secretion system protein SpaS; Validated
Probab=23.72 E-value=6e+02 Score=23.62 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=23.9
Q ss_pred HhhhhccccccCC----CCCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHHH
Q 028150 15 AIGVIFSPETFGS----KSDGLNSS----KLSPFLKLAHLLCFSTAWGAALWVTF 61 (213)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~hLL~~s~~~G~~iw~tF 61 (213)
=.|.+|+|+.+.- .++ .++- +...++.+..-+.-.+..|.-.|..+
T Consensus 99 Q~G~~fs~k~l~Pk~~rlNP-~~GlKriFS~~~lvel~KsllKv~li~~v~~~~~ 152 (361)
T PRK08156 99 QTRFVLATEAIKLNFSALNP-VKGLKKIFSLRTVKEFVKALLYLIVFALTAYVFW 152 (361)
T ss_pred hcCceeccccCCCCchhcCH-hHhHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888887641 111 1111 33455555555555555555555443
No 21
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=23.45 E-value=5.8e+02 Score=23.38 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=9.4
Q ss_pred HHHHHHhhcHhhHHHHHH
Q 028150 129 NLTNLFVFTPMTIEMMKQ 146 (213)
Q Consensus 129 ~l~N~~~l~P~~~~~m~~ 146 (213)
+++-...+.|.+.+.++.
T Consensus 50 Ti~vR~~l~Pl~i~q~~~ 67 (329)
T PRK01315 50 VIVIRALLIPLFVKQIKS 67 (329)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455556766544433
No 22
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=23.22 E-value=2.6e+02 Score=19.92 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=18.8
Q ss_pred HHHHhhcHhhHHHHHHHHHHHHH
Q 028150 131 TNLFVFTPMTIEMMKQRHKVERE 153 (213)
Q Consensus 131 ~N~~~l~P~~~~~m~~R~~~E~~ 153 (213)
+-..++.|+..+....|....++
T Consensus 26 l~sk~iLP~i~~~~~~R~~i~k~ 48 (70)
T MTH00025 26 FLVFFVLPTIKRNWLIRKSLMKK 48 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 44578899999999999987664
No 23
>PRK09108 type III secretion system protein HrcU; Validated
Probab=23.14 E-value=6e+02 Score=23.44 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHhhhhccccccCC---CCCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHH
Q 028150 13 FLAIGVIFSPETFGS---KSDGLNSS----KLSPFLKLAHLLCFSTAWGAALWVT 60 (213)
Q Consensus 13 ~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~hLL~~s~~~G~~iw~t 60 (213)
++-.|.+|+|+.+.- +=++.++. +...++.+.--+.--+.+|.-.|..
T Consensus 104 ~~q~G~~fs~k~l~Pk~~rlNP~~glKriFS~~~l~el~KsllK~~~~~~v~~~~ 158 (353)
T PRK09108 104 APQTGLQISLKPVMPKFDALNPAAGLKKIFSLRSLIELVKMIVKAVVIAAVLWKG 158 (353)
T ss_pred HHhhccccccccCCCCchhcCHhHhHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333578899887631 11111111 2345555555555555555555443
No 24
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=22.99 E-value=1.8e+02 Score=17.23 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 028150 179 NKKFGMIHGLSSLANIMSFGSLAMHSWYLA 208 (213)
Q Consensus 179 ~k~F~~~HgiSsllNLv~l~~~~~~~~~La 208 (213)
+|.+.++|...++.-.+-++....-+..++
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999888887777777666654
No 25
>PRK06298 type III secretion system protein; Validated
Probab=22.62 E-value=6.2e+02 Score=23.41 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=24.7
Q ss_pred hhhhccccccCC---CCCCCCCC----cchhHHHHHHHHHHHHHHHHHHHHH
Q 028150 16 IGVIFSPETFGS---KSDGLNSS----KLSPFLKLAHLLCFSTAWGAALWVT 60 (213)
Q Consensus 16 ~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~hLL~~s~~~G~~iw~t 60 (213)
.|++|+|+.+.- +=++.++. +...++.+.--+.--+.+|.-.|..
T Consensus 106 ~G~~~s~k~l~p~~~rlNP~~G~KriFS~~~lvel~KsllK~~~~~~v~~~~ 157 (356)
T PRK06298 106 VGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIV 157 (356)
T ss_pred hCceeccccCCCChhhcCHhhhHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888887641 11111111 3456666666666666666555544
No 26
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=20.25 E-value=34 Score=23.80 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHhH
Q 028150 172 NPKLAAMNKKFGMIHGL 188 (213)
Q Consensus 172 ~~~~~~l~k~F~~~Hgi 188 (213)
..+|++++.+|.++|--
T Consensus 21 e~kY~eI~eeFD~l~q~ 37 (64)
T PF12347_consen 21 ENKYREINEEFDKLHQR 37 (64)
T ss_dssp -----------------
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 56899999999999853
No 27
>PRK11633 cell division protein DedD; Provisional
Probab=20.23 E-value=51 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhhccccccC
Q 028150 6 RFLAAVAFLAIGVIFSPETFG 26 (213)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (213)
|+.-++-++|+||||-|+.+.
T Consensus 8 RLVGtiVLVALgVIfLP~llD 28 (226)
T PRK11633 8 RLVGTIVLVALGVIVLPGLLD 28 (226)
T ss_pred hhhhhhhhheehheecccccc
Confidence 777888899999999999873
Done!