Query 028150
Match_columns 213
No_of_seqs 113 out of 281
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aw6_A CAAX prenyl protease 1 16.4 2.1E+02 0.0072 26.2 5.8 61 150-210 45-107 (482)
2 1q02_A Sequestosome 1; helical 13.9 71 0.0024 20.6 1.3 9 2-10 27-35 (52)
3 2dii_A TFIIH basal transcripti 10.4 2.9E+02 0.0098 18.2 3.5 11 172-182 26-36 (61)
4 1kf6_C Fumarate reductase 15 k 9.4 2.5E+02 0.0086 21.3 3.3 20 187-206 66-85 (130)
5 2lkg_A Acetylcholine receptor; 8.7 6.4E+02 0.022 18.8 6.1 35 85-119 49-83 (140)
6 2kmu_A ATP-dependent DNA helic 8.0 4E+02 0.014 17.1 3.4 41 143-185 9-50 (56)
7 3eff_K Voltage-gated potassium 7.3 6.7E+02 0.023 17.9 7.6 8 86-93 45-52 (139)
8 2lx0_A Membrane fusion protein 5.6 4.8E+02 0.016 14.5 2.5 13 40-52 12-24 (32)
9 3n1e_A Vacuolar protein sortin 4.8 5E+02 0.017 19.7 3.0 20 169-188 48-67 (141)
10 1lki_A Leukemia inhibitory fac 4.1 1E+03 0.035 18.9 4.3 31 171-203 108-138 (180)
No 1
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=16.43 E-value=2.1e+02 Score=26.17 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHhccCCccccccccccccCChHHHHHHHHHHHHHhHHHHHH-HHHH-HHHHHHHHHhhcc
Q 028150 150 VEREENIGDEVGWTKNREVAKSNPKLAAMNKKFGMIHGLSSLAN-IMSF-GSLAMHSWYLAGK 210 (213)
Q Consensus 150 ~E~~~g~G~evg~~~~~~~~~~~~~~~~l~k~F~~~HgiSsllN-Lv~l-~~~~~~~~~La~~ 210 (213)
+.+.....+|....-+.|.-++..+|..-+.+|+.++++-+.+- ++-+ .+..-+.|.++.+
T Consensus 45 ~~~~~~vP~~l~~~~~~e~f~ka~~Y~~~k~~f~~~~~~~~~i~~~~~l~~g~~~~lw~~~~~ 107 (482)
T 4aw6_A 45 YKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGIPYLWRLSGR 107 (482)
T ss_dssp HHHCCSCCSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTCC
T ss_pred HhccCCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333344554444455556678889999999999999766554 3332 2344566665544
No 2
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=13.93 E-value=71 Score=20.60 Aligned_cols=9 Identities=56% Similarity=1.195 Sum_probs=7.0
Q ss_pred hhHHHHHHH
Q 028150 2 AWLTRFLAA 10 (213)
Q Consensus 2 ~~~~~~~~~ 10 (213)
||+||++..
T Consensus 27 GWLt~LL~~ 35 (52)
T 1q02_A 27 GWLTRLLQT 35 (52)
T ss_dssp SHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 799998754
No 3
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=10.39 E-value=2.9e+02 Score=18.24 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=8.2
Q ss_pred ChHHHHHHHHH
Q 028150 172 NPKLAAMNKKF 182 (213)
Q Consensus 172 ~~~~~~l~k~F 182 (213)
|++.+++.+.|
T Consensus 26 N~~L~qLyk~L 36 (61)
T 2dii_A 26 DPVLFQLYKDL 36 (61)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 57777888776
No 4
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=9.40 E-value=2.5e+02 Score=21.32 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 028150 187 GLSSLANIMSFGSLAMHSWY 206 (213)
Q Consensus 187 giSsllNLv~l~~~~~~~~~ 206 (213)
=+..++|++++++.++|...
T Consensus 66 PivvilniiaLaa~L~Ha~T 85 (130)
T 1kf6_C 66 PVIVIINLITLAAALLHTKT 85 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999853
No 5
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=8.65 E-value=6.4e+02 Score=18.81 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 028150 85 PAYFSLVGVCCSIAVASFAYLHPWKSSSTAEKYQL 119 (213)
Q Consensus 85 P~YF~l~~~~~~v~l~~~~~~~p~~~~~~~~~~q~ 119 (213)
|.|+..+...+.+.+.......=|-..+..+|..+
T Consensus 49 ~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvsl 83 (140)
T 2lkg_A 49 PLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTE 83 (140)
T ss_dssp THHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHH
T ss_pred ceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEE
Confidence 66888888888776655554432211123466554
No 6
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=7.96 E-value=4e+02 Score=17.06 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhccCCccccccccccccCChH-HHHHHHHHHHH
Q 028150 143 MMKQRHKVEREENIGDEVGWTKNREVAKSNPK-LAAMNKKFGMI 185 (213)
Q Consensus 143 ~m~~R~~~E~~~g~G~evg~~~~~~~~~~~~~-~~~l~k~F~~~ 185 (213)
++.+-...|++-- .+-|+..+.++-+.+|+ .+.+.|.+.++
T Consensus 9 lk~~LK~WE~~F~--~~~GRkP~k~DIk~~p~~I~~~YK~Y~~L 50 (56)
T 2kmu_A 9 VRERLQAWERAFR--RQRGRRPSQDDVEAAPEETRALYREYRTL 50 (56)
T ss_dssp HHHHHHHHHHHHH--HHTCSCCCHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHhCCCCCHHHHHcCHHHHHHHHHHHHHH
Confidence 3333344454432 22355556666677888 88887777665
No 7
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=7.31 E-value=6.7e+02 Score=17.95 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 028150 86 AYFSLVGV 93 (213)
Q Consensus 86 ~YF~l~~~ 93 (213)
.||...+.
T Consensus 45 ~yf~~~T~ 52 (139)
T 3eff_K 45 LWWSVETA 52 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHheee
Confidence 46664444
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=5.55 E-value=4.8e+02 Score=14.53 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 028150 40 FLKLAHLLCFSTA 52 (213)
Q Consensus 40 ~~~~~hLL~~s~~ 52 (213)
++.++-.+.|++|
T Consensus 12 lvalltflafgfw 24 (32)
T 2lx0_A 12 LVALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444555544
No 9
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=4.84 E-value=5e+02 Score=19.68 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=17.6
Q ss_pred ccCChHHHHHHHHHHHHHhH
Q 028150 169 AKSNPKLAAMNKKFGMIHGL 188 (213)
Q Consensus 169 ~~~~~~~~~l~k~F~~~Hgi 188 (213)
+.+++.++.+.|...++|-.
T Consensus 48 pvpS~~m~tl~Ke~~kLH~~ 67 (141)
T 3n1e_A 48 PVPSPCFRNICKQMTKMHEA 67 (141)
T ss_dssp SSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 35799999999999999964
No 10
>1lki_A Leukemia inhibitory factor; cytokine, four helix bundle; 2.00A {Mus musculus} SCOP: a.26.1.1 PDB: 1a7m_A 2q7n_B* 1pvh_B 1emr_A
Probab=4.09 E-value=1e+03 Score=18.89 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 028150 171 SNPKLAAMNKKFGMIHGLSSLANIMSFGSLAMH 203 (213)
Q Consensus 171 ~~~~~~~l~k~F~~~HgiSsllNLv~l~~~~~~ 203 (213)
.++...+|+....+..|+- -|+.|.+|.-+|
T Consensus 108 a~~Ll~~L~~t~~~~rgLl--snv~c~lc~~y~ 138 (180)
T 1lki_A 108 AVSLQVKLNATIDVMRGLL--SNVLCRLCNKYR 138 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc
Confidence 5688899999999999984 577788776544
Done!