Query 028150
Match_columns 213
No_of_seqs 113 out of 281
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028150.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028150hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oeda_ f.36.1.1 (A:) Acetylch 15.4 66 0.0048 23.6 3.9 13 85-97 1-13 (227)
2 d1m56d_ f.23.8.1 (D:) Bacteria 11.3 1.4E+02 0.01 16.8 4.1 21 78-98 10-30 (42)
3 d2k0bx1 a.5.2.1 (X:1-52) Seque 10.9 40 0.0029 20.2 1.0 9 2-10 27-35 (52)
4 d1oedc_ f.36.1.1 (C:) Acetylch 10.2 99 0.0072 22.7 3.4 11 85-95 1-11 (260)
5 d1oedb_ f.36.1.1 (B:) Acetylch 9.8 1.3E+02 0.0096 21.9 4.0 14 131-144 86-99 (250)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 9.6 3.4E+02 0.024 20.1 8.6 16 67-82 141-156 (447)
7 d1pv7a_ f.38.1.2 (A:) Lactose 9.4 3.1E+02 0.023 19.5 8.5 25 67-91 337-361 (417)
8 d1kf6c_ f.21.2.2 (C:) Fumarate 8.9 1.3E+02 0.0092 21.1 3.3 21 186-206 65-85 (130)
9 d1oede_ f.36.1.1 (E:) Acetylch 8.0 1.2E+02 0.0087 22.3 3.1 13 85-97 1-13 (260)
10 d1qled_ f.23.8.1 (D:) Bacteria 7.9 2E+02 0.015 16.2 4.1 21 78-98 11-31 (43)
No 1
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=15.36 E-value=66 Score=23.60 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 028150 85 PAYFSLVGVCCSI 97 (213)
Q Consensus 85 P~YF~l~~~~~~v 97 (213)
|.||..+.+.+.+
T Consensus 1 plyy~~~li~P~~ 13 (227)
T d1oeda_ 1 PLYFVVNVIIPCL 13 (227)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CcEEEehHHHHHH
Confidence 3344444443333
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.28 E-value=1.4e+02 Score=16.83 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=15.6
Q ss_pred hHhhhhhhHHHHHHHHHHHHH
Q 028150 78 NLQSKMFPAYFSLVGVCCSIA 98 (213)
Q Consensus 78 ~lQ~kLFP~YF~l~~~~~~v~ 98 (213)
++|.|-|..+.+..+....+.
T Consensus 10 ~vQEKTF~gFik~~t~~~i~~ 30 (42)
T d1m56d_ 10 TQQEKTFAGFVRMVTWAAVVI 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 579999998888777655443
No 3
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.89 E-value=40 Score=20.19 Aligned_cols=9 Identities=56% Similarity=1.195 Sum_probs=6.9
Q ss_pred hhHHHHHHH
Q 028150 2 AWLTRFLAA 10 (213)
Q Consensus 2 ~~~~~~~~~ 10 (213)
||+||++-.
T Consensus 27 GWLt~LL~s 35 (52)
T d2k0bx1 27 GWLTRLLQT 35 (52)
T ss_dssp SCHHHHHHH
T ss_pred hHHHHHHHH
Confidence 799998754
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.25 E-value=99 Score=22.71 Aligned_cols=11 Identities=9% Similarity=0.319 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q 028150 85 PAYFSLVGVCC 95 (213)
Q Consensus 85 P~YF~l~~~~~ 95 (213)
|.||.++.+.+
T Consensus 1 pl~y~~n~~~P 11 (260)
T d1oedc_ 1 PLFYVINFITP 11 (260)
T ss_dssp CTHHHHHHHHH
T ss_pred CceEEEhHHHH
Confidence 33444444433
No 5
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=9.78 E-value=1.3e+02 Score=21.93 Aligned_cols=14 Identities=36% Similarity=0.244 Sum_probs=3.6
Q ss_pred HHHHhhcHhhHHHH
Q 028150 131 TNLFVFTPMTIEMM 144 (213)
Q Consensus 131 ~N~~~l~P~~~~~m 144 (213)
+|...-+|...+.-
T Consensus 86 ~~~~~~~~~~~p~P 99 (250)
T d1oedb_ 86 LNLHHRSPNTHTMP 99 (250)
T ss_dssp HHHHHTC-------
T ss_pred eeeeccCcccCCcc
Confidence 45445566655443
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.56 E-value=3.4e+02 Score=20.08 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=8.4
Q ss_pred hhccCChhhhhhHhhh
Q 028150 67 MFKNLPRHQFGNLQSK 82 (213)
Q Consensus 67 lfk~LpR~~FG~lQ~k 82 (213)
.-...|+++-|...+.
T Consensus 141 i~~~~~~~~r~~~~~~ 156 (447)
T d1pw4a_ 141 MVHWWSQKERGGIVSV 156 (447)
T ss_dssp HHTTCTTTHHHHHHHH
T ss_pred HHHHHHhhcccccccc
Confidence 3344566665555543
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.38 E-value=3.1e+02 Score=19.53 Aligned_cols=25 Identities=8% Similarity=0.014 Sum_probs=14.7
Q ss_pred hhccCChhhhhhHhhhhhhHHHHHH
Q 028150 67 MFKNLPRHQFGNLQSKMFPAYFSLV 91 (213)
Q Consensus 67 lfk~LpR~~FG~lQ~kLFP~YF~l~ 91 (213)
.-+..|.+.-|..++-.+-.-..++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g 361 (417)
T d1pv7a_ 337 ITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 3455687777777776544433333
No 8
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=8.92 E-value=1.3e+02 Score=21.14 Aligned_cols=21 Identities=10% Similarity=0.276 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 028150 186 HGLSSLANIMSFGSLAMHSWY 206 (213)
Q Consensus 186 HgiSsllNLv~l~~~~~~~~~ 206 (213)
|-++.++|++++++.++|...
T Consensus 65 nP~vv~lniiaLaa~L~Ha~T 85 (130)
T d1kf6c_ 65 NPVIVIINLITLAAALLHTKT 85 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999853
No 9
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.97 E-value=1.2e+02 Score=22.34 Aligned_cols=13 Identities=8% Similarity=0.375 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 028150 85 PAYFSLVGVCCSI 97 (213)
Q Consensus 85 P~YF~l~~~~~~v 97 (213)
|.||.++.+.+.+
T Consensus 1 PlyY~~~lilP~~ 13 (260)
T d1oede_ 1 PLFYIINIIAPCV 13 (260)
T ss_dssp CCSHHHHHHTHHH
T ss_pred CcEEEEhHHHHHH
Confidence 3344444444433
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=7.90 E-value=2e+02 Score=16.21 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=15.3
Q ss_pred hHhhhhhhHHHHHHHHHHHHH
Q 028150 78 NLQSKMFPAYFSLVGVCCSIA 98 (213)
Q Consensus 78 ~lQ~kLFP~YF~l~~~~~~v~ 98 (213)
++|.|-|..+....+..+.+.
T Consensus 11 ~vQEkTF~gFi~~~t~~~i~~ 31 (43)
T d1qled_ 11 RHQQATFAGFIKGATWVSILS 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 579999998888777654443
Done!