BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028152
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/213 (56%), Positives = 152/213 (71%), Gaps = 8/213 (3%)
Query: 1 MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQF 60
MQ+KLVP +SAGTVTA+YL S + DEIDFEFLGN +G PYI+ TNV+T GKGDREQ+
Sbjct: 64 MQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRI 123
Query: 61 YLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD 120
YLWFD T +FH YS+LWN IVF +D PIR FKN + G+ +P Q M++Y+SLWNAD
Sbjct: 124 YLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNAD 183
Query: 121 DWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFS----QELDS 176
DWATRGGL KTDWS+APF AS+R+F+ C S+ C+ T W+ Q+LD+
Sbjct: 184 DWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCA---TQGARWWDQKEFQDLDA 240
Query: 177 SSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
R+L WV+Q Y +YNYCTD SR+P +P EC
Sbjct: 241 FQYRRLSWVRQKYTIYNYCTDRSRYP-SMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 14/211 (6%)
Query: 3 LKLVPNNSAGTVTAYYLKS----PGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
+KL +AG +T++YL + PG DEID EFLG + G PY + TNV+ +G GDRE
Sbjct: 90 IKLQSGYTAGVITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDREM 148
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
+ +LWFD T D+H Y+I W P I+F++D PIR + P + + +Y S+W+
Sbjct: 149 RIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWD 205
Query: 119 ADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSS 178
A WAT G K D+ PF + +F +C SSC NP + + + +L
Sbjct: 206 ASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVE-AASSC--NPASVSPY--GQLSQQQ 260
Query: 179 QRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
++WVQ+NYMVYNYC D +R L EC
Sbjct: 261 VAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 117/211 (55%), Gaps = 14/211 (6%)
Query: 3 LKLVPNNSAGTVTAYYLKS----PGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
+KL +AG +T++YL + PG DEID EFLG + G PY + TNV+ +G GDRE
Sbjct: 67 IKLQSGYTAGVITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDREM 125
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
+ +LWFD T D+H Y+I W P I+F++D PIR + P + + +Y S+W+
Sbjct: 126 RIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWD 182
Query: 119 ADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSS 178
A WAT G K D+ PF + +F +C SSC NP + + + +L
Sbjct: 183 ASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVE-AASSC--NPASVSPY--GQLSQQQ 237
Query: 179 QRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
++WVQ+NYMVYNYC D +R L EC
Sbjct: 238 VAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 19/216 (8%)
Query: 3 LKLVPNNSAGTVTAYYLKS----PGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGD--- 55
+KL +AG +T++YL + PG DEID EFLG + G PY + TNV+ +G GD
Sbjct: 66 IKLQSGYTAGVITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNI 124
Query: 56 --REQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMY 113
RE + +LWFD T D+H Y+I W P I+F++D PIR + P + M +Y
Sbjct: 125 IGRELRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVY 181
Query: 114 ASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQE 173
S+W+A WAT G K D+ PF + +F +C SSC NP + + + +
Sbjct: 182 GSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVE-AASSC--NPASVSPY--GQ 236
Query: 174 LDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
L ++WVQ+NYMVYNYC D +R L EC
Sbjct: 237 LSQQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 117/216 (54%), Gaps = 19/216 (8%)
Query: 3 LKLVPNNSAGTVTAYYLKS----PGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGD--- 55
+KL +AG +T++YL + PG DEID EFLG + G PY + TNV+ +G GD
Sbjct: 69 IKLQSGYTAGVITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNI 127
Query: 56 --REQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMY 113
RE + +LWFD T D+H Y+I W P I+F++D PIR + P + + +Y
Sbjct: 128 IGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVY 184
Query: 114 ASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQE 173
S+W+A WAT G K D+ PF + +F +C SSC NP + + + +
Sbjct: 185 GSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVE-AASSC--NPASVSPY--GQ 239
Query: 174 LDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
L ++WVQ+NYMVYNYC D +R L EC
Sbjct: 240 LSQQQVAAMEWVQKNYMVYNYCDDPTR-DHTLTPEC 274
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++ + P + G V++++ + G WDEID EFLG + V N YT G G E+
Sbjct: 18 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEK 74
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
L FD + FHTY+ W PG+I +Y+DG K+ + IP + M +LWN
Sbjct: 75 VISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMM---NLWN 127
Query: 119 A---DDW 122
DDW
Sbjct: 128 GTGVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++ + P + G V++++ + G WDEID EFLG + V N YT G G E+
Sbjct: 18 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEK 74
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
L FD + FHTY+ W PG+I +Y+DG K+ + IP + M +LWN
Sbjct: 75 VISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMM---NLWN 127
Query: 119 A---DDW 122
DDW
Sbjct: 128 GTGVDDW 134
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++ + P + G V++++ + G WDEID EFLG + V N YT G G E+
Sbjct: 76 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEK 132
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
L FD + FHTY+ W PG+I +Y+DG K+ + IP + M +LWN
Sbjct: 133 VISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMM---NLWN 185
Query: 119 A---DDW 122
DDW
Sbjct: 186 GTGVDDW 192
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++ + P + G V++++ + G WDEID EFLG + V N YT G G E+
Sbjct: 18 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEK 74
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
L FD + FHTY+ W PG+I +Y+DG K+ + IP + M +LWN
Sbjct: 75 VISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMM---NLWN 127
Query: 119 A---DDW 122
DDW
Sbjct: 128 GTGVDDW 134
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++ + P + G V++++ + G WDEID EFLG + V N YT G G E+
Sbjct: 74 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEK 130
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
L FD + FHTY+ W PG+I +Y+DG K+ + IP + M +LWN
Sbjct: 131 VISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMM---NLWN 183
Query: 119 A---DDW 122
DDW
Sbjct: 184 GTGVDDW 190
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYLKS---PGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++ + P + G V+A+Y + G WDEID EFLG + V N YT G G+ E+
Sbjct: 63 EVNMKPAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEK 119
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLW- 117
L FD +HTY+ W P I +Y+DG + K+ + IP + ++Y SLW
Sbjct: 120 IVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIYMSLWA 172
Query: 118 --NADDW 122
D+W
Sbjct: 173 GAGVDEW 179
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++ + P + G V++++ + G WD+ID +FLG + V N YT G G E+
Sbjct: 76 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDQIDIQFLGK---DTTKVQFNYYTNGVGGHEK 132
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
L FD + FHTY+ W PG+I +Y+DG K+ + IP + M +LWN
Sbjct: 133 VISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMM---NLWN 185
Query: 119 A---DDW 122
DDW
Sbjct: 186 GTGVDDW 192
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 23 GASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPGHI 82
G WDEID EFLG + V N YT G G E+ L FD + FHTY+ W PG+I
Sbjct: 17 GTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYI 73
Query: 83 VFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNA---DDW 122
+Y+DG K+ + IP + M +LWN DDW
Sbjct: 74 KWYVDGV----LKHTATANIPSTPGKIMM---NLWNGTGVDDW 109
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++++ P + G V++++ + G WDEID EFLG + V N YT G G+ E+
Sbjct: 100 EVRMKPAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEK 156
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
L FD +HTY+ W P I +Y+DG + K+ + IP + M +LWN
Sbjct: 157 IVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTATNQIPTTPGKIM---MNLWN 209
Query: 119 A---DDW 122
D+W
Sbjct: 210 GTGVDEW 216
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
++ + P + G V++++ + G WDEID EFLG + V N YT G G+ E+
Sbjct: 76 EVNMKPAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEK 132
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118
L FD +HTY+ W P I +Y+DG + K+ + IP + ++ +LWN
Sbjct: 133 IVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIMMNLWN 185
Query: 119 A---DDW 122
D+W
Sbjct: 186 GAGVDEW 192
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 2 QLKLVPNNSAGTVTAYYLKSP---GASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQ 58
Q+++ P + G V++++ + G WDEID EFLG + V N YT G+ E
Sbjct: 96 QVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK---VQFNYYTNSAGNHEY 152
Query: 59 QFYLWFDLTADFHTYSILWNPGHIVFYIDGRPI-REFKNLESFGIPYPKKQSMRMYASLW 117
+ L FD + DFH Y+ W P +I + +DG + R + ++ +P K + ++ +
Sbjct: 153 IYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVYRAYDDIPV----HPGKIMLNIWPGI- 207
Query: 118 NADDW 122
D+W
Sbjct: 208 GVDEW 212
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 54 GDREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMY 113
G E+ L FD + FHTY+ W PG+I +Y+DG K+ + IP + M
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMM-- 55
Query: 114 ASLWNA---DDW 122
+LWN DDW
Sbjct: 56 -NLWNGTGVDDW 66
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 2 QLKLVPNNSAGTVTAYYL---KSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQG 52
++ + P + G V++++ + G WDEID EFLG + V N YT G
Sbjct: 164 EVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNG 214
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 10 SAGTVTAYYLKSPGAS------WDEIDFEFLGNLSGNPYIVHTNVYTQGKG-DREQQFYL 62
++GTV++ +L G+ W E+D E LG NP +N+ T G + + +
Sbjct: 29 ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHH 85
Query: 63 WFDLTAD--FHTYSILWNPGHIVFYIDGRPIRE 93
AD FHTY + W P ++ + +DG+ +R+
Sbjct: 86 AVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 10 SAGTVTAYYLKSPGAS------WDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQF-YL 62
++GTV++ +L G+ W E+D E LG NP +N+ T G ++ +
Sbjct: 30 ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSIKHH 86
Query: 63 WFDLTAD--FHTYSILWNPGHIVFYIDGRPIRE 93
AD FHTY + W P ++ + +DG+ +R+
Sbjct: 87 AVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 10 SAGTVTAYYLKSPGAS------WDEIDFEFLGNLSGNPYIVHTNVYTQGKG-DREQQFYL 62
++GTV++ +L G+ W E+D E LG NP +N+ T G + + +
Sbjct: 32 ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHH 88
Query: 63 WFDLTAD--FHTYSILWNPGHIVFYIDGRPIRE 93
AD FHTY + W P ++ + +DG+ +R+
Sbjct: 89 AVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 10 SAGTVTAYYLKSPGAS------WDEIDFEFLGNLSGNPYIVHTNVYTQGKG-DREQQFYL 62
++GTV++ +L G+ W E+D E LG NP +N+ T G + + +
Sbjct: 29 ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHH 85
Query: 63 WFDLTAD--FHTYSILWNPGHIVFYIDGRPIRE 93
AD FHTY + W P ++ + +DG+ +R+
Sbjct: 86 AVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 10 SAGTVTAYYLKSPGAS------WDEIDFEFLGNLSGNPYIVHTNVYTQGKG-DREQQFYL 62
++GTV++ L G+ W E+D E LG NP +N+ T G + + +
Sbjct: 30 ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHH 86
Query: 63 WFDLTAD--FHTYSILWNPGHIVFYIDGRPIRE 93
AD FHTY + W P ++ + +DG+ +R+
Sbjct: 87 AVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 10 SAGTVTAYYLKSPGAS------WDEIDFEFLGNLSGNPYIVHTNVYTQGKG-DREQQFYL 62
++GTV++ +L G+ W E+D E LG +P +N+ T G + + +
Sbjct: 32 ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK---SPGSFQSNIITGKAGAQKTSEKHH 88
Query: 63 WFDLTAD--FHTYSILWNPGHIVFYIDGRPIRE 93
AD FHTY + W P ++ + +DG+ +R+
Sbjct: 89 AVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 121
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 22 PGASW-DEIDFEFLGNLSGNPYIVHTNVYTQG--KGDREQQFYL---WFDLTADFHTYSI 75
P W D + + + N+ P++VH +++ G G+ Y+ + FHT+++
Sbjct: 114 PNTPWPDSGEIDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAV 173
Query: 76 LWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDW 122
W PG I + +DG + + + ++ G P+ Q M ++ DW
Sbjct: 174 DWRPGSITWSVDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVGGDW 220
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 22 PGASW-DEIDFEFLGNLSGNPYIVHTNV----YTQGKGDREQ-QFYLWFDLTADFHTYSI 75
PG W + + + N+ P+ VH V Y+ G G Q + FHT+++
Sbjct: 110 PGTPWPSSGEIDIMENVGFEPHRVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAV 169
Query: 76 LWNPGHIVFYIDGR 89
W PG I +++DG+
Sbjct: 170 DWKPGEITWFVDGQ 183
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 28 EIDF-EFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWF------DLTADFHTYSILWNPG 80
EID EFLG+ P +H V+ G + + D T DFH + I+W P
Sbjct: 137 EIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 81 HIVFYIDG 88
I +Y+DG
Sbjct: 194 KIKWYVDG 201
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 60 FYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNL 97
++L FD DFHTY + I +Y+DG + E NL
Sbjct: 182 YHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDNL 219
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ AP +FR F + + VWS GI
Sbjct: 182 YTTRGGKIPIRWT-APEAIAFRKFTSASDVWSYGI 215
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRK 181
+ TRGG W+ AP ++R F + + VWS GI + + ++ D S+Q
Sbjct: 168 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW----DMSNQDV 222
Query: 182 LKWVQQNY 189
+K +++ Y
Sbjct: 223 IKAIEEGY 230
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRK 181
+ TRGG W+ AP ++R F + + VWS GI + + ++ D S+Q
Sbjct: 174 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW----DMSNQDV 228
Query: 182 LKWVQQNY 189
+K +++ Y
Sbjct: 229 IKAIEEGY 236
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRK 181
+ TRGG W+ AP ++R F + + VWS GI + + ++ D S+Q
Sbjct: 189 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW----DMSNQDV 243
Query: 182 LKWVQQNY 189
+K +++ Y
Sbjct: 244 IKAIEEGY 251
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 65 DLTADFHTYSILWNPGHIVFYIDGR 89
D + DFH +SI W+ + +Y+DG+
Sbjct: 173 DFSEDFHIFSIEWDEDEVEWYVDGQ 197
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 65 DLTADFHTYSILWNPGHIVFYIDGR 89
D + DFH +SI W+ + +Y+DG+
Sbjct: 181 DFSEDFHIFSIEWDEDEVEWYVDGQ 205
>pdb|2R6Z|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Ngo1261 From Neisseria Gonorrhoeae, Northeast Structural
Genomics Consortium Target Ngr48
pdb|2R6Z|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Ngo1261 From Neisseria Gonorrhoeae, Northeast Structural
Genomics Consortium Target Ngr48
Length = 258
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 122 WATRGGLAKTDWSQAPF---TASFRNFNAKACVWSIGISSCSLNPTTKNT 168
W GL + + A +F A AC+ S GI LNP T++T
Sbjct: 88 WDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDT 137
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 27 DEIDFEFLGNLSGNPYIVHTNVYTQGK----GDREQQFYLWFDLTADFHTYSILWNPGHI 82
D + + ++ NP +VH V+T+ G + DFH Y+I W P I
Sbjct: 120 DNGEIDIAEHVGFNPDVVHGTVHTKAYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEI 179
Query: 83 VFYIDGRPIREFKN 96
+++D F N
Sbjct: 180 RWFVDDSLYYRFPN 193
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRK 181
+ T GG W+ AP S+R F + + VWS GI W E+ + +R
Sbjct: 205 YTTSGGKIPIRWT-APEAISYRKFTSASDVWSFGIV----------MW---EVMTYGERP 250
Query: 182 LKWVQQNYMVYNYCTDTSRFPQGLPQEC 209
W N+ V D R P P +C
Sbjct: 251 Y-WELSNHEVMKAINDGFRLPT--PMDC 275
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 203 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 236
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ T GG W+ AP +FR F++ + VWS G+
Sbjct: 209 YTTTGGKIPIRWT-APEAIAFRTFSSASDVWSFGV 242
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 205 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 238
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 176 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 209
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 193 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 226
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
+ TRGG W+ +P ++R F + + VWS GI
Sbjct: 176 YTTRGGKIPIRWT-SPEAIAYRKFTSASDVWSYGI 209
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 122 WATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSCSLNPTTKNTWFSQELDSSSQRK 181
+ T GG W+ AP +R F + + VWS GI + + ++ D S+Q
Sbjct: 203 YTTTGGKIPVRWT-APEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYW----DMSNQDV 257
Query: 182 LKWVQQNY 189
+K +++ Y
Sbjct: 258 IKAIEEGY 265
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 124 TRGGLAKTDWSQAPFTASFRNFNAKACVWSIGI 156
T GG W+ AP +FR F++ + VWS G+
Sbjct: 211 TTGGKIPIRWT-APEAIAFRTFSSASDVWSFGV 242
>pdb|1O4Z|A Chain A, The Three-dimensional Structure Of Beta-agarase B From
Zobellia Galactanivorans
pdb|1O4Z|B Chain B, The Three-dimensional Structure Of Beta-agarase B From
Zobellia Galactanivorans
pdb|1O4Z|C Chain C, The Three-dimensional Structure Of Beta-agarase B From
Zobellia Galactanivorans
pdb|1O4Z|D Chain D, The Three-dimensional Structure Of Beta-agarase B From
Zobellia Galactanivorans
Length = 346
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 69 DFHTYSILW-NPGHIVFYIDGRPIR 92
+FH + + W +P H+ +YIDG +R
Sbjct: 228 EFHRFGVYWRDPWHLEYYIDGVLVR 252
>pdb|4ATF|A Chain A, Crystal Structure Of Inactivated Mutant Beta-Agarase B In
Complex With Agaro-Octaose
pdb|4ATF|B Chain B, Crystal Structure Of Inactivated Mutant Beta-Agarase B In
Complex With Agaro-Octaose
pdb|4ATF|C Chain C, Crystal Structure Of Inactivated Mutant Beta-Agarase B In
Complex With Agaro-Octaose
pdb|4ATF|D Chain D, Crystal Structure Of Inactivated Mutant Beta-Agarase B In
Complex With Agaro-Octaose
Length = 308
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 69 DFHTYSILW-NPGHIVFYIDGRPIR 92
+FH + + W +P H+ +YIDG +R
Sbjct: 197 EFHRFGVYWRDPWHLEYYIDGVLVR 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,436,076
Number of Sequences: 62578
Number of extensions: 323113
Number of successful extensions: 741
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 56
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)