Query 028152
Match_columns 213
No_of_seqs 278 out of 1574
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 8.9E-74 1.9E-78 499.4 25.4 210 1-212 74-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 2.5E-73 5.5E-78 492.7 26.2 206 1-209 53-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 5.3E-38 1.1E-42 263.6 19.5 137 1-149 52-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 6.8E-32 1.5E-36 227.2 18.8 133 1-148 73-211 (212)
5 cd08023 GH16_laminarinase_like 100.0 4.2E-29 9.2E-34 212.4 17.7 139 1-148 84-235 (235)
6 cd02178 GH16_beta_agarase Beta 100.0 4.7E-29 1E-33 215.8 16.5 142 1-148 103-257 (258)
7 PF00722 Glyco_hydro_16: Glyco 100.0 2E-28 4.3E-33 200.4 16.9 130 1-146 52-185 (185)
8 cd00413 Glyco_hydrolase_16 gly 100.0 4.7E-28 1E-32 201.6 18.0 131 1-148 72-210 (210)
9 cd02182 GH16_Strep_laminarinas 100.0 5.2E-28 1.1E-32 209.4 15.9 141 1-148 92-258 (259)
10 cd02180 GH16_fungal_KRE6_gluca 99.9 8.4E-27 1.8E-31 205.5 15.4 143 1-148 84-294 (295)
11 cd02177 GH16_kappa_carrageenas 99.9 2.6E-26 5.6E-31 200.1 17.3 135 1-148 97-268 (269)
12 cd08024 GH16_CCF Coelomic cyto 99.9 1.3E-25 2.7E-30 201.0 15.2 121 1-123 119-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 9E-25 1.9E-29 194.8 13.3 118 1-120 116-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 8.9E-21 1.9E-25 170.9 13.8 115 1-123 123-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 7.5E-22 1.6E-26 131.1 4.2 45 165-209 4-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.5 1.4E-13 3.1E-18 128.0 12.5 87 67-161 365-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.1 2.3E-10 5.1E-15 100.7 7.9 119 1-123 85-251 (293)
18 PF10287 DUF2401: Putative TOS 93.8 0.24 5.1E-06 42.7 6.9 76 2-80 106-207 (235)
19 smart00560 LamGL LamG-like jel 92.7 1.4 3.1E-05 33.9 9.3 71 66-153 59-131 (133)
20 PF13385 Laminin_G_3: Concanav 92.2 0.51 1.1E-05 35.6 6.1 67 67-151 84-150 (157)
21 PF09264 Sial-lect-inser: Vibr 91.8 0.4 8.6E-06 40.0 5.3 27 68-94 92-120 (198)
22 smart00210 TSPN Thrombospondin 91.4 3.6 7.7E-05 33.6 10.7 29 67-95 116-144 (184)
23 cd00152 PTX Pentraxins are pla 90.4 4.1 8.8E-05 33.7 10.3 75 66-151 88-164 (201)
24 smart00159 PTX Pentraxin / C-r 90.2 4.6 0.0001 33.6 10.5 76 66-152 88-165 (206)
25 PF06439 DUF1080: Domain of Un 86.1 2.3 4.9E-05 33.9 5.9 32 66-97 125-156 (185)
26 PF09224 DUF1961: Domain of un 80.3 7.9 0.00017 33.0 7.0 60 68-147 159-218 (218)
27 cd00110 LamG Laminin G domain; 78.0 27 0.00058 26.3 14.9 27 67-93 79-105 (151)
28 smart00282 LamG Laminin G doma 60.6 46 0.001 24.8 6.8 27 67-93 61-87 (135)
29 KOG1834 Calsyntenin [Extracell 55.5 16 0.00034 36.3 4.1 55 67-128 441-495 (952)
30 PF02973 Sialidase: Sialidase, 54.5 57 0.0012 27.3 6.8 74 68-153 103-178 (190)
31 PF14099 Polysacc_lyase: Polys 49.2 95 0.0021 25.6 7.5 70 66-147 150-224 (224)
32 PF00354 Pentaxin: Pentaxin fa 47.3 1.6E+02 0.0035 24.3 10.2 71 66-147 82-154 (195)
33 KOG4352 Fas-mediated apoptosis 43.5 59 0.0013 26.4 5.0 49 44-93 73-127 (187)
34 PF02210 Laminin_G_2: Laminin 41.2 1.3E+02 0.0028 21.5 9.4 74 67-148 53-126 (128)
35 PF07691 PA14: PA14 domain; I 35.6 63 0.0014 24.3 4.0 29 66-95 57-85 (145)
36 PF06832 BiPBP_C: Penicillin-B 34.7 56 0.0012 23.1 3.4 36 81-118 44-79 (89)
37 KOG3516 Neurexin IV [Signal tr 29.7 6E+02 0.013 27.4 10.7 83 2-94 205-292 (1306)
38 PF02057 Glyco_hydro_59: Glyco 27.6 3.2E+02 0.0068 27.4 8.1 28 67-94 610-637 (669)
39 cd00070 GLECT Galectin/galacto 27.3 1.9E+02 0.0041 21.8 5.4 68 25-95 25-104 (127)
40 PF13510 Fer2_4: 2Fe-2S iron-s 23.7 89 0.0019 22.0 2.8 18 80-97 2-19 (82)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=8.9e-74 Score=499.35 Aligned_cols=210 Identities=57% Similarity=1.089 Sum_probs=193.6
Q ss_pred CEEEeeCCCCCceEeeeEEecCCCCCCeeEEEEcCCCCCCceEEEeeEEeCCCCCceeeEEecCCCCCCcEEEEEEEeCC
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNPG 80 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~r~~~~~l~fd~~~dfHtY~i~W~p~ 80 (213)
||||||+|+++|+||||||++..+.+|||||||||+.+++|+++|||+|.+|.++|++++.++||++++||+|+|+|+|+
T Consensus 74 ~riKLp~G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~ 153 (291)
T PLN03161 74 MLIKLVPGNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPS 153 (291)
T ss_pred EEEEeCCCCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchh
Confidence 68999999899999999999976789999999999998999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEEEEEEeCCC--CCC
Q 028152 81 HIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIG--ISS 158 (213)
Q Consensus 81 ~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~--~~~ 158 (213)
+|+|||||++||++++.+..+.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.++++ ...
T Consensus 154 ~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~ 233 (291)
T PLN03161 154 EVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQ 233 (291)
T ss_pred hEEEEECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccc
Confidence 999999999999999877778899998999999999999999999999999999999999999999999998753 246
Q ss_pred CCCCCCCCCCccc----cCCCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCCCCcCC
Q 028152 159 CSLNPTTKNTWFS----QELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQECTNK 212 (213)
Q Consensus 159 c~~~~~~~~~w~~----~~l~~~~~~~~~~~~~~~~~YdYC~d~~r~~~~~p~eC~~~ 212 (213)
|... +...||+ ++|+++|+++|+|||+||||||||+|++|||+++||||.++
T Consensus 234 c~~~--~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 234 CADP--TPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred cCCC--CccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 8642 1346876 48999999999999999999999999999998789999864
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=2.5e-73 Score=492.67 Aligned_cols=206 Identities=57% Similarity=1.106 Sum_probs=191.3
Q ss_pred CEEEeeCCCCCceEeeeEEecC-CCCCCeeEEEEcCCCCCCceEEEeeEEeCCCCCceeeEEecCCCCCCcEEEEEEEeC
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSP-GASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILWNP 79 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~-~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~r~~~~~l~fd~~~dfHtY~i~W~p 79 (213)
||||||+|+++|+||||||+++ ||.++|||||+||+.+|+|+++|||+|.+|.+++++++.++||++++||+|+|+|+|
T Consensus 53 ~riKlp~g~s~G~~pAFwl~~~~wp~~~EID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp 132 (263)
T cd02176 53 MRIKLPPGDSAGTVTAFYLSSQGPDNHDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNP 132 (263)
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCCCCCeEEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEcc
Confidence 6999999988999999999998 589999999999999889999999999999989999999999999999999999999
Q ss_pred CeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEEEEEEeCCCCCCC
Q 028152 80 GHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAKACVWSIGISSC 159 (213)
Q Consensus 80 ~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~~~~c 159 (213)
++|+|||||++||++++.+..+.+||+++||+|++|||+||+|||+||++|+||+++||+|.|++|+|++|.+++....|
T Consensus 133 ~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~ 212 (263)
T cd02176 133 HQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFS 212 (263)
T ss_pred ceEEEEECCEEEEEEecccccCCCCCccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccc
Confidence 99999999999999999877788999989999999999999999999999999999999999999999999987665567
Q ss_pred CCCCCCCCCccc----cCCCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCCCC
Q 028152 160 SLNPTTKNTWFS----QELDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209 (213)
Q Consensus 160 ~~~~~~~~~w~~----~~l~~~~~~~~~~~~~~~~~YdYC~d~~r~~~~~p~eC 209 (213)
... +...||+ ++|+++|+++|+|||+||||||||+|++|||. +||||
T Consensus 213 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 213 SCS--CTEDWWNGSTYQQLSANQQRAMEWVRRNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred cCC--CccccccccccccCCHHHHHHHHHHHHCCEEEecCCCCCcCCC-CcCCC
Confidence 532 1145776 48999999999999999999999999999995 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=5.3e-38 Score=263.58 Aligned_cols=137 Identities=34% Similarity=0.689 Sum_probs=120.0
Q ss_pred CEEEeeCCCCCceEeeeEEecCCCCCCeeEEEEcCCCCCCceEEEeeEEeCCCC---CceeeEEecCCCCCCcEEEEEEE
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKG---DREQQFYLWFDLTADFHTYSILW 77 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g---~r~~~~~l~fd~~~dfHtY~i~W 77 (213)
||||||.+ +|+||||||+++ .++|||||++|+ ++..+|+|++.++.. ++++.+.+.++++++||+|+|+|
T Consensus 52 aR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veW 124 (203)
T cd02183 52 VTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDW 124 (203)
T ss_pred EEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEE
Confidence 69999998 899999999997 689999999997 467899999977654 44567778889899999999999
Q ss_pred eCCeEEEEEcCeEEEEEecccc-CCcCCCCCCceeEEEEeeeCCC---------cccCCCccccCCCCCCeEEEEeEEEE
Q 028152 78 NPGHIVFYIDGRPIREFKNLES-FGIPYPKKQSMRMYASLWNADD---------WATRGGLAKTDWSQAPFTASFRNFNA 147 (213)
Q Consensus 78 ~p~~I~fyVDg~~vr~~~~~~~-~g~~~P~~~Pm~l~lnlw~gg~---------Wat~GG~~~~d~~~~Pf~~~~~~~~v 147 (213)
+|++|+|||||++++++++.+. .+..||. +||+|+||+|+||+ || ||. +||+.+||+|.|++|+|
T Consensus 125 tpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v 199 (203)
T cd02183 125 TKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRLQIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTV 199 (203)
T ss_pred ecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEEEEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEE
Confidence 9999999999999999987542 3567995 99999999999985 99 775 69999999999999998
Q ss_pred EE
Q 028152 148 KA 149 (213)
Q Consensus 148 ~~ 149 (213)
..
T Consensus 200 ~~ 201 (203)
T cd02183 200 TD 201 (203)
T ss_pred Ee
Confidence 53
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=6.8e-32 Score=227.20 Aligned_cols=133 Identities=33% Similarity=0.622 Sum_probs=113.3
Q ss_pred CEEEeeCCCCCceEeeeEEecC---CCCCCeeEEEEcCCCCCCceEEEeeEEeCCCCCceeeEEecCCCCCCcEEEEEEE
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSP---GASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWFDLTADFHTYSILW 77 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~---~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~r~~~~~l~fd~~~dfHtY~i~W 77 (213)
||||+|.+ +|+||||||++. +..++|||||++|+. +..+++|+|.++.+..+..+.+.++++++||+|+|+|
T Consensus 73 ar~k~~~~--~G~~~Afwl~~~~~~~~~~~EIDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W 147 (212)
T cd02175 73 VRMKPAKG--SGVVSSFFTYTGPYDGDPHDEIDIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEW 147 (212)
T ss_pred EEEEcCCC--CeEEEEEEEEecCCCCCCCCEEEEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEE
Confidence 68999987 899999999974 345799999999974 4478899998877666666778899999999999999
Q ss_pred eCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCC---CcccCCCccccCCCCCCeEEEEeEEEEE
Q 028152 78 NPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD---DWATRGGLAKTDWSQAPFTASFRNFNAK 148 (213)
Q Consensus 78 ~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg---~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 148 (213)
+|++|+|||||+++++++..+ ..+|. +||+|++|||.++ +|+ |. ++. .+|+.|+||+|||.
T Consensus 148 ~~~~i~~yvDg~~v~~~~~~~---~~~p~-~p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 148 EPDSIRWYVDGELVHEATATD---PNIPD-TPGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred eCCEEEEEECCEEEEEEcCcc---CCCCC-CCcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 999999999999999997643 35785 9999999999995 598 54 366 88999999999984
No 5
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=4.2e-29 Score=212.38 Aligned_cols=139 Identities=27% Similarity=0.449 Sum_probs=112.7
Q ss_pred CEEEeeCCCCCceEeeeEEecC------CCCCCeeEE-EEcCCCCCCceEEEeeEEeCCCC----CceeeEEecC-CCCC
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSP------GASWDEIDF-EFLGNLSGNPYIVHTNVYTQGKG----DREQQFYLWF-DLTA 68 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~------~~~~~EIDi-E~lG~~~g~p~~~~tn~~~~g~g----~r~~~~~l~f-d~~~ 68 (213)
||||||.+ +|+||||||+++ |+.++|||| |++|+. +..+++++|..+.. .....+.+.. +..+
T Consensus 84 ~r~k~~~~--~G~~pafWl~~~~~~~~~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 158 (235)
T cd08023 84 ARAKLPKG--QGTWPAFWMLGENIKYVGWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSD 158 (235)
T ss_pred EEEEccCC--CCceeEEEEcCCCCCCCCCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCC
Confidence 68999988 899999999985 467899998 999984 45788999877653 2234455555 7899
Q ss_pred CcEEEEEEEeCCeEEEEEcCeEEEEEeccccC-CcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEE
Q 028152 69 DFHTYSILWNPGHIVFYIDGRPIREFKNLESF-GIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNA 147 (213)
Q Consensus 69 dfHtY~i~W~p~~I~fyVDg~~vr~~~~~~~~-g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 147 (213)
+||+|+|+|+|++|+|||||++++++++.... ...+|+++||+|+||++++++|+ |.. ..-...|..|.||+|||
T Consensus 159 ~fHtY~~~W~p~~i~~yvDG~~v~~~~~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrv 234 (235)
T cd08023 159 DFHTYAVEWTPDKITFYVDGKLYFTYTNPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRV 234 (235)
T ss_pred CcEEEEEEEECCEEEEEECCEEEEEEcccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEE
Confidence 99999999999999999999999999875432 13456679999999999999998 531 23457799999999998
Q ss_pred E
Q 028152 148 K 148 (213)
Q Consensus 148 ~ 148 (213)
+
T Consensus 235 y 235 (235)
T cd08023 235 Y 235 (235)
T ss_pred C
Confidence 4
No 6
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=99.96 E-value=4.7e-29 Score=215.82 Aligned_cols=142 Identities=23% Similarity=0.240 Sum_probs=107.8
Q ss_pred CEEEeeCCCCCceEeeeEEecC-CCCCCeeEE-EEcCCCC--CCceEEEeeEEeCCCC-----Cc---eeeEEecCCCCC
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSP-GASWDEIDF-EFLGNLS--GNPYIVHTNVYTQGKG-----DR---EQQFYLWFDLTA 68 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~-~~~~~EIDi-E~lG~~~--g~p~~~~tn~~~~g~g-----~r---~~~~~l~fd~~~ 68 (213)
||||||.+ . ++|||||++. ++.++|||| |++|... ..+..+|+++|..+.+ .+ ...+...++.++
T Consensus 103 aR~K~p~~--~-~~pAfW~~~~~~~~~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (258)
T cd02178 103 ARAKASNL--P-MSSAFWLLSDTKDSTTEIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELAD 179 (258)
T ss_pred EEEEcCCC--C-ccceEEEccCCCCCCCcEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCcccc
Confidence 68999876 4 4799999996 678999998 9999752 1245788887643221 11 123445667789
Q ss_pred CcEEEEEEEe-CCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEE
Q 028152 69 DFHTYSILWN-PGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNA 147 (213)
Q Consensus 69 dfHtY~i~W~-p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 147 (213)
+||+|+|+|+ |++|+|||||++++++++.+. ...+|+++||+|+||+++|| |+...+.. ..-...|..|+||||||
T Consensus 180 ~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRv 256 (258)
T cd02178 180 DFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRV 256 (258)
T ss_pred CeEEEEEEEcCCCeEEEEECCEEEEEEcCccc-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEE
Confidence 9999999999 999999999999999987543 34578889999999999998 98211121 12345699999999998
Q ss_pred E
Q 028152 148 K 148 (213)
Q Consensus 148 ~ 148 (213)
.
T Consensus 257 y 257 (258)
T cd02178 257 Y 257 (258)
T ss_pred e
Confidence 5
No 7
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=99.96 E-value=2e-28 Score=200.35 Aligned_cols=130 Identities=38% Similarity=0.663 Sum_probs=109.5
Q ss_pred CEEEeeCCCCCceEeeeEEecC--CCCCCeeEEEEcCCCCCCceEEEeeEEeCCCCCc--eeeEEecCCCCCCcEEEEEE
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSP--GASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDR--EQQFYLWFDLTADFHTYSIL 76 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~--~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~r--~~~~~l~fd~~~dfHtY~i~ 76 (213)
+|||++.+ +|+|+||||.+. |+.++|||||++|+.. ..+++++|..+.+.. +..+.+.+++.++||+|+|+
T Consensus 52 ar~k~~~~--~G~~~afwl~~~~~~~~~~EIDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~ 126 (185)
T PF00722_consen 52 ARIKAPPG--PGVWPAFWLTGADGWPDGGEIDIEFLGNDP---TQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFE 126 (185)
T ss_dssp EEEECSCS--TTEEEEEEEETTGSTTTTEEEEEEEETTST---TEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEE
T ss_pred EEEEecCC--CceEecccccccccccchhhhhhhhccccc---cceeeeeeecccCCcccceeeccccCcCCCcEEEEEE
Confidence 47777766 899999999763 6899999999999853 469999999888765 45677788999999999999
Q ss_pred EeCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEE
Q 028152 77 WNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFN 146 (213)
Q Consensus 77 W~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 146 (213)
|+|++|+|||||++++++......+..+|+..||+|.+++|.+++|++..| .|+|||||
T Consensus 127 W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 127 WTPDRIRFYIDGKLVRTVTNSDVPGSPYPFSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EETTEEEEEETTEEEEEEESSGSTTTCSSEEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred EecCeEEEEECCEEEEEEeccccccccCcccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 999999999999999999887654446887789999999999998884333 68899887
No 8
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.96 E-value=4.7e-28 Score=201.57 Aligned_cols=131 Identities=34% Similarity=0.541 Sum_probs=108.8
Q ss_pred CEEEeeCCCCCceEeeeEEecCC---CCCCeeEEEEcCCCCCCceEEEeeEEeCCCC-----CceeeEEecCCCCCCcEE
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSPG---ASWDEIDFEFLGNLSGNPYIVHTNVYTQGKG-----DREQQFYLWFDLTADFHT 72 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~~---~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g-----~r~~~~~l~fd~~~dfHt 72 (213)
+|||++.+ .|+|+||||+++. +..+|||||++|+. +..+++++|..+.+ .....+.++++..++||+
T Consensus 72 ar~k~~~~--~G~~~afw~~~~~~~~~~~~EIDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 146 (210)
T cd00413 72 ARAKLAGG--PGAVSAFWTYSDDDDPPDGGEIDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHT 146 (210)
T ss_pred EEEEcCCC--CceEEEEEEeCCCCCCCCCCeEEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEE
Confidence 58999987 9999999999973 67999999999974 45788888876543 223445666778899999
Q ss_pred EEEEEeCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEEE
Q 028152 73 YSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAK 148 (213)
Q Consensus 73 Y~i~W~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 148 (213)
|+|+|+|++|+|||||++++++... .|. +||+|+||+|.+++|+ |. .+...+|..|.||+|||.
T Consensus 147 Y~~~W~~~~i~~yvDG~~~~~~~~~------~p~-~p~~i~ln~~~~~~~~---~~--~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 147 YRVDWTPGEITFYVDGVLVATITNQ------VPD-DPMNIILNLWSDGGWW---WG--GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred EEEEEeCCEEEEEECCEEEEEECCC------CCC-CCcEEEEEEEECCCCc---cc--CCCCCCCcEEEEEEEEEC
Confidence 9999999999999999999998653 565 9999999999999987 32 245688999999999973
No 9
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=5.2e-28 Score=209.41 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=99.9
Q ss_pred CEEEeeCCC---CCceEeeeEEecC--------CCCCCeeEE-EEcCCCCCCceEEEeeEEeCC-CC--Cceee-EEe-c
Q 028152 1 MQLKLVPNN---SAGTVTAYYLKSP--------GASWDEIDF-EFLGNLSGNPYIVHTNVYTQG-KG--DREQQ-FYL-W 63 (213)
Q Consensus 1 ~riKlp~g~---s~G~~~AFwl~~~--------~~~~~EIDi-E~lG~~~g~p~~~~tn~~~~g-~g--~r~~~-~~l-~ 63 (213)
||||||.+. ..|+||||||++. ||..+|||| |..|.. +.+ +.++|... .+ ..+.. ... .
T Consensus 92 aRik~p~~~~~~~~G~wPAfWll~~~~~~~~~~WP~~GEIDImE~~~~~---~~~-~~t~H~~~~~~~~~~~~~~~~~~~ 167 (259)
T cd02182 92 ASIRLGDVPGSNQQGIWPAFWMLGDSYRGNGTNWPACGELDIMENVNGL---STG-YGTLHCGVAPGGPCNEPTGIGAGT 167 (259)
T ss_pred EEEECCCCcccCCCCcCeeeeccCCCccCCCCCCCccceeeeeeccCCC---Cce-EEEEeeCCCCCCCCccccCcccCC
Confidence 689999752 4799999999984 688899999 999863 333 33455422 11 11111 110 1
Q ss_pred CCCCCCcEEEEEEEeC-----CeEEEEEcCeEEEEEeccccC---CcCCCCCCceeEEEEeeeCCCcccCCCccc-cCCC
Q 028152 64 FDLTADFHTYSILWNP-----GHIVFYIDGRPIREFKNLESF---GIPYPKKQSMRMYASLWNADDWATRGGLAK-TDWS 134 (213)
Q Consensus 64 fd~~~dfHtY~i~W~p-----~~I~fyVDg~~vr~~~~~~~~---g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~-~d~~ 134 (213)
....++||+|+|+|++ ++|+|||||+++++++..... ..+.|+++||+|+||+++||+|+ |... ..-.
T Consensus 168 ~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~ 244 (259)
T cd02182 168 RLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTAT 244 (259)
T ss_pred CCCCCCcEEEEEEEccCCCCCCEEEEEECCEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCccccc
Confidence 1235899999999997 999999999999998764221 22345579999999999999998 4321 1124
Q ss_pred CCCeEEEEeEEEEE
Q 028152 135 QAPFTASFRNFNAK 148 (213)
Q Consensus 135 ~~Pf~~~~~~~~v~ 148 (213)
..|..|+||+|||+
T Consensus 245 ~~p~~m~VDyVRVy 258 (259)
T cd02182 245 GSGSAMEVDYVAVY 258 (259)
T ss_pred CCCceEEEEEEEEe
Confidence 57999999999985
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.95 E-value=8.4e-27 Score=205.49 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=97.5
Q ss_pred CEEEeeCC-CCCceEeeeEEecC-------------CCC------CCeeEE-EEcCCCC-CCce---EEE----------
Q 028152 1 MQLKLVPN-NSAGTVTAYYLKSP-------------GAS------WDEIDF-EFLGNLS-GNPY---IVH---------- 45 (213)
Q Consensus 1 ~riKlp~g-~s~G~~~AFwl~~~-------------~~~------~~EIDi-E~lG~~~-g~p~---~~~---------- 45 (213)
||||||.+ .+.|+||||||+++ ||. .+|||| |.+|... +... .+|
T Consensus 84 aR~klp~~~~~~G~WPAfWmlg~~~~~~~~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~ 163 (295)
T cd02180 84 ASASLPGKPDVSGLWPAVWTMGNLGRPGYLATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRP 163 (295)
T ss_pred EEEECCCCCCCCCcceeeecccccccccccccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccC
Confidence 69999974 34899999999983 664 499998 9998532 0111 111
Q ss_pred ------eeEEeC------C-CCCcee-eE----EecC----CCCCCcEEEEEEEeC-----CeEEEEEcCeEEEEEeccc
Q 028152 46 ------TNVYTQ------G-KGDREQ-QF----YLWF----DLTADFHTYSILWNP-----GHIVFYIDGRPIREFKNLE 98 (213)
Q Consensus 46 ------tn~~~~------g-~g~r~~-~~----~l~f----d~~~dfHtY~i~W~p-----~~I~fyVDg~~vr~~~~~~ 98 (213)
..+|.. . .++..+ .. .+.- ...++||+|+|+|+| ++|+|||||+++++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~ 243 (295)
T cd02180 164 DYSSDFVTIYNDTTTIMNTYTGGVFQQAISCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKA 243 (295)
T ss_pred CCCccceEEecCcccccccccCCccccccccccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHH
Confidence 111211 0 011111 00 1111 136889999999999 8999999999999998653
Q ss_pred cC--C----cCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEEE
Q 028152 99 SF--G----IPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNAK 148 (213)
Q Consensus 99 ~~--g----~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 148 (213)
.. + ..+| ++||+|+||+++||+|+ |. ..+-...|..|+||||||+
T Consensus 244 ~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 244 LGPNGNIGWRIIP-EEPMYIILNLGISSNFQ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred cCCcccccccccC-CCCeEEEEEEEeccccC---CC-CcccCCCCCEEEEEEEEEE
Confidence 21 1 2345 59999999999999997 43 2345677999999999996
No 11
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.94 E-value=2.6e-26 Score=200.13 Aligned_cols=135 Identities=24% Similarity=0.289 Sum_probs=100.2
Q ss_pred CEEEeeC-CCCCceEeeeEEecC---------CCCCCeeEE-EEcCCC---CCCce----EEEeeEEeCCCCC--c----
Q 028152 1 MQLKLVP-NNSAGTVTAYYLKSP---------GASWDEIDF-EFLGNL---SGNPY----IVHTNVYTQGKGD--R---- 56 (213)
Q Consensus 1 ~riKlp~-g~s~G~~~AFwl~~~---------~~~~~EIDi-E~lG~~---~g~p~----~~~tn~~~~g~g~--r---- 56 (213)
|||||++ + +|+||||||+++ ||.++|||| |.+|.. .+++. .+|+.++.++.+. +
T Consensus 97 aRik~~p~~--~G~wpAfW~~~~~~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~ 174 (269)
T cd02177 97 ARIKGADIF--PGVCPSFWLYSDIDYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMY 174 (269)
T ss_pred EEEECCCCC--CceEeEEEEeccCCCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCcccc
Confidence 6899765 5 899999999984 688999999 888753 12233 4565555554431 1
Q ss_pred ----eeeEEecCCCCCCcEEEEEEEeCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCC---------Ccc
Q 028152 57 ----EQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNAD---------DWA 123 (213)
Q Consensus 57 ----~~~~~l~fd~~~dfHtY~i~W~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg---------~Wa 123 (213)
.+.+.+++|++++||+|+|+|+|++|+|||||++++++.+. +. .+||.|.+++-... .|+
T Consensus 175 ~~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yvDg~~~~~~~~~------~w-~~~~~~~~~~~~~~p~~~~~~~~~~~ 247 (269)
T cd02177 175 PPTEQLNYHRPFDPSKDFHTYGCNVNQDEIIWYVDGVEVGRKPNK------YW-HRPMNVTLSLGLRKPFVKFFDNKNNA 247 (269)
T ss_pred ccccceEEccCCCCccCcEEEEEEEeCCEEEEEECCEEEEEEcCC------cc-ccccEEeeccccCcchhhhhccccCC
Confidence 12355778999999999999999999999999999998642 33 38888888875543 355
Q ss_pred cCCCccccCCCCCCeEEEEeEEEEE
Q 028152 124 TRGGLAKTDWSQAPFTASFRNFNAK 148 (213)
Q Consensus 124 t~GG~~~~d~~~~Pf~~~~~~~~v~ 148 (213)
|+. ...+.+|..|+||||||.
T Consensus 248 --~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 248 --KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred --CCC--CccCcCCceEEEEEEEEe
Confidence 343 246788999999999985
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.93 E-value=1.3e-25 Score=201.03 Aligned_cols=121 Identities=23% Similarity=0.216 Sum_probs=91.6
Q ss_pred CEEEeeCCCCCceEeeeEEecC------CCCCCeeEE-EEcCCCCCCc-------eEEEeeEEeCCCCC----cee--eE
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSP------GASWDEIDF-EFLGNLSGNP-------YIVHTNVYTQGKGD----REQ--QF 60 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~------~~~~~EIDi-E~lG~~~g~p-------~~~~tn~~~~g~g~----r~~--~~ 60 (213)
||||||.| .|+||||||++. ||.++|||| |.+|+....+ ..++..+|...... +.. ..
T Consensus 119 ~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~g~~~~~~~~~~~~~~~ 196 (330)
T cd08024 119 VRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTLHWGPDPGQNRYTKTTGKR 196 (330)
T ss_pred EEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEEEeCCCCCCCcccccccee
Confidence 69999998 899999999984 788999998 9999753211 24566676432211 111 11
Q ss_pred -EecCCCCCCcEEEEEEEeCCeEEEEEcCeEEEEEeccc-------------------cCCcCCCCCCceeEEEEeeeCC
Q 028152 61 -YLWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLE-------------------SFGIPYPKKQSMRMYASLWNAD 120 (213)
Q Consensus 61 -~l~fd~~~dfHtY~i~W~p~~I~fyVDg~~vr~~~~~~-------------------~~g~~~P~~~Pm~l~lnlw~gg 120 (213)
....+.+++||+|+|+|+|++|+|||||+++++++... ..+..+||++||||+|||++||
T Consensus 197 ~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~aPFd~~fyliLNvAVGG 276 (330)
T cd08024 197 SDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMAPFDQEFYLILNVAVGG 276 (330)
T ss_pred ccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCcCCCCCCCEEEEEEEEecC
Confidence 12345678999999999999999999999999988521 0124579999999999999999
Q ss_pred Ccc
Q 028152 121 DWA 123 (213)
Q Consensus 121 ~Wa 123 (213)
.|.
T Consensus 277 ~~~ 279 (330)
T cd08024 277 TNG 279 (330)
T ss_pred CCC
Confidence 875
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.92 E-value=9e-25 Score=194.83 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=84.9
Q ss_pred CEEEeeCCCCCceEeeeEEecC------C-CCCCeeEE-EEcCCCC----CC---ceEEEeeEEeCCCC-Ccee---eEE
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSP------G-ASWDEIDF-EFLGNLS----GN---PYIVHTNVYTQGKG-DREQ---QFY 61 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~------~-~~~~EIDi-E~lG~~~----g~---p~~~~tn~~~~g~g-~r~~---~~~ 61 (213)
||||||.| .|+||||||++. | |.++|||| |.+|+.. |. ..+++...+..... .+.. ...
T Consensus 116 vRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~ 193 (321)
T cd02179 116 IRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGGPVLTDAEPHRSANLKTKI 193 (321)
T ss_pred EEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcccccCCCcccccccccccC
Confidence 69999998 899999999985 3 78899999 9999852 10 01223222221111 1111 111
Q ss_pred ecCCCCCCcEEEEEEEeCCeEEEEEcCeEEEEEecccc----------------CCcCCCCCCceeEEEEeeeCC
Q 028152 62 LWFDLTADFHTYSILWNPGHIVFYIDGRPIREFKNLES----------------FGIPYPKKQSMRMYASLWNAD 120 (213)
Q Consensus 62 l~fd~~~dfHtY~i~W~p~~I~fyVDg~~vr~~~~~~~----------------~g~~~P~~~Pm~l~lnlw~gg 120 (213)
...+.+++||+|+|+|+|++|+|||||+++++++.... .....||++||||+|||++||
T Consensus 194 ~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 194 NNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred CCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCCCCeEEEEEEEecC
Confidence 12356799999999999999999999999999986321 123569999999999999997
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=8.9e-21 Score=170.90 Aligned_cols=115 Identities=29% Similarity=0.436 Sum_probs=98.1
Q ss_pred CEEEeeCCCCCceEeeeEEecC----CCCCCeeEEEEcCCCCCCceEEEeeEEeCCCCCceeeEEecC-CCCCCcEEEEE
Q 028152 1 MQLKLVPNNSAGTVTAYYLKSP----GASWDEIDFEFLGNLSGNPYIVHTNVYTQGKGDREQQFYLWF-DLTADFHTYSI 75 (213)
Q Consensus 1 ~riKlp~g~s~G~~~AFwl~~~----~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~r~~~~~l~f-d~~~dfHtY~i 75 (213)
||||++.+ .|+||||||++. +..++|||||+||+.+. +..+|+|.+.++.++.+......+ +..++||+|++
T Consensus 123 vrak~~~~--~G~wpafw~~~g~~~dg~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~ 199 (355)
T COG2273 123 VRAKLPLV--SGLWPAFWTLTGLSRDGGWPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAF 199 (355)
T ss_pred EEeccCCC--cccceeeEeccCcccCCCCCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCccccccccee
Confidence 58888866 999999999994 35679999999997643 456999999999887777666777 88899999999
Q ss_pred EEeCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcc
Q 028152 76 LWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWA 123 (213)
Q Consensus 76 ~W~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wa 123 (213)
+|.++.|+|||||++++++... ...|+ .||++++|+|.++.+.
T Consensus 200 ~W~~~~i~Wyvdg~~~~~~~~p----~~~~~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 200 LWGEDSISWYVDGAPVATATKP----DYIPQ-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred eccCCeEEEEEcceEeeEEecc----ccCcC-CcceeEEeecccCccC
Confidence 9999999999999999998753 24476 9999999999998765
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.85 E-value=7.5e-22 Score=131.09 Aligned_cols=45 Identities=49% Similarity=1.239 Sum_probs=37.5
Q ss_pred CCCCccccC---CCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCCCC
Q 028152 165 TKNTWFSQE---LDSSSQRKLKWVQQNYMVYNYCTDTSRFPQGLPQEC 209 (213)
Q Consensus 165 ~~~~w~~~~---l~~~~~~~~~~~~~~~~~YdYC~d~~r~~~~~p~eC 209 (213)
+...||++. |+++|+++|+|||+||||||||+|++|||.++|+||
T Consensus 4 ~~~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 4 SSKSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTTSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCcccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 346799875 999999999999999999999999999998779999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.51 E-value=1.4e-13 Score=128.02 Aligned_cols=87 Identities=21% Similarity=0.365 Sum_probs=66.9
Q ss_pred CCCcEEEEEEEeCC-----eEEEEEcCeEEEEEecccc--C----CcCCCCCCceeEEEEeeeCCCcccCCCccccCCC-
Q 028152 67 TADFHTYSILWNPG-----HIVFYIDGRPIREFKNLES--F----GIPYPKKQSMRMYASLWNADDWATRGGLAKTDWS- 134 (213)
Q Consensus 67 ~~dfHtY~i~W~p~-----~I~fyVDg~~vr~~~~~~~--~----g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~- 134 (213)
..+||+|+|||.|. .|+|+|||+++.++..... + ....|. .||+|++||....+|+ . +||.
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~----~--vd~~~ 437 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG----Y--VDWNH 437 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCc-CCceeeeccccccccC----c--ccccc
Confidence 37899999999874 8999999999999876532 1 245886 9999999999999995 2 4765
Q ss_pred -CCCeEEEEeEEEEEEEEeCCCCCCCCC
Q 028152 135 -QAPFTASFRNFNAKACVWSIGISSCSL 161 (213)
Q Consensus 135 -~~Pf~~~~~~~~v~~c~~~~~~~~c~~ 161 (213)
.+|.+|.||||||+.=. +...-.|.+
T Consensus 438 L~FP~~M~IDYVRVYQ~~-~~~~vgCDP 464 (504)
T PF03935_consen 438 LCFPATMRIDYVRVYQPE-DAINVGCDP 464 (504)
T ss_pred ccccceEEEeEEEEeccC-CCCeeeeCC
Confidence 46999999999996531 111246764
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.10 E-value=2.3e-10 Score=100.66 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=72.6
Q ss_pred CEE-EeeCCCCCceEeeeEEecC-CCCCCeeEE-EEcCCCCCCceEEEeeE---E-eCC--CC-------------Cce-
Q 028152 1 MQL-KLVPNNSAGTVTAYYLKSP-GASWDEIDF-EFLGNLSGNPYIVHTNV---Y-TQG--KG-------------DRE- 57 (213)
Q Consensus 1 ~ri-Klp~g~s~G~~~AFwl~~~-~~~~~EIDi-E~lG~~~g~p~~~~tn~---~-~~g--~g-------------~r~- 57 (213)
+|| |||.+ .|+||||||++. ||..+|||| |.++.....-.+|||.- . ..+ .+ +..
T Consensus 85 ~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC 162 (293)
T cd02181 85 ADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGC 162 (293)
T ss_pred EEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCc
Confidence 355 89987 899999999986 899999998 99986432222444430 0 000 00 000
Q ss_pred -------eeEEecCCCCCCcEEEEEEEeCCeEEEEEc---CeEEEEEecccc-------CCcCCCCC--------CceeE
Q 028152 58 -------QQFYLWFDLTADFHTYSILWNPGHIVFYID---GRPIREFKNLES-------FGIPYPKK--------QSMRM 112 (213)
Q Consensus 58 -------~~~~l~fd~~~dfHtY~i~W~p~~I~fyVD---g~~vr~~~~~~~-------~g~~~P~~--------~Pm~l 112 (213)
..+-..|+ ..+=-+|++||+.+.|+.+.= .+|-- ++.... +-..||.. ++++|
T Consensus 163 ~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~d-i~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~i 240 (293)
T cd02181 163 GVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPAD-ITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRI 240 (293)
T ss_pred eeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCcc-cccCCCCCcccCcccccCCCCCCChhHhcccCEE
Confidence 01112232 456679999999999986542 22211 111110 11335421 78999
Q ss_pred EEEeeeCCCcc
Q 028152 113 YASLWNADDWA 123 (213)
Q Consensus 113 ~lnlw~gg~Wa 123 (213)
++|+-.-|+||
T Consensus 241 Vfn~tfCGdwA 251 (293)
T cd02181 241 VFDTTFCGDWA 251 (293)
T ss_pred EEEeecccccc
Confidence 99999999999
No 18
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=93.84 E-value=0.24 Score=42.67 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=46.0
Q ss_pred EEEeeCCC-----CCceEeeeEEecC---------------CC-CCCeeEE-EEcCCCCCCceEEEeeEEe-CCCCCc--
Q 028152 2 QLKLVPNN-----SAGTVTAYYLKSP---------------GA-SWDEIDF-EFLGNLSGNPYIVHTNVYT-QGKGDR-- 56 (213)
Q Consensus 2 riKlp~g~-----s~G~~~AFwl~~~---------------~~-~~~EIDi-E~lG~~~g~p~~~~tn~~~-~g~g~r-- 56 (213)
+.+||... ...=.||+||++. |. -++|+|| |+|... +. .+.+.+|. +|..+.
T Consensus 106 ef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~~~~~ 182 (235)
T PF10287_consen 106 EFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTDDING 182 (235)
T ss_pred EEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCccccCC
Confidence 67888731 2345799999974 43 5999998 999763 33 56666665 332110
Q ss_pred eeeEEecC-CCCCCcEEEEEEEeCC
Q 028152 57 EQQFYLWF-DLTADFHTYSILWNPG 80 (213)
Q Consensus 57 ~~~~~l~f-d~~~dfHtY~i~W~p~ 80 (213)
.-.-.-.| .|++..-+++|.++.+
T Consensus 183 g~G~~~yf~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 183 GGGSSDYFKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred CCCCCCcccCCCCCCeEEEEEEcCC
Confidence 00000112 3677888888888643
No 19
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=92.67 E-value=1.4 Score=33.86 Aligned_cols=71 Identities=11% Similarity=0.258 Sum_probs=46.1
Q ss_pred CCCCcEEEEEEEeC--CeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEe
Q 028152 66 LTADFHTYSILWNP--GHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFR 143 (213)
Q Consensus 66 ~~~dfHtY~i~W~p--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 143 (213)
+...||...+.++. .+|++||||+++.+.... ..+...|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 44789999999998 789999999998654321 1122234333211111 11 12458999999
Q ss_pred EEEEEEEEeC
Q 028152 144 NFNAKACVWS 153 (213)
Q Consensus 144 ~~~v~~c~~~ 153 (213)
.|||..++.+
T Consensus 122 evriy~~aLs 131 (133)
T smart00560 122 EVRVYNRALT 131 (133)
T ss_pred EEEEeccccC
Confidence 9999887654
No 20
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=92.17 E-value=0.51 Score=35.56 Aligned_cols=67 Identities=9% Similarity=0.256 Sum_probs=39.9
Q ss_pred CCCcEEEEEEEeCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEE
Q 028152 67 TADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFN 146 (213)
Q Consensus 67 ~~dfHtY~i~W~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 146 (213)
...||..++.|....+.+||||+.+.+...... .......++ ..|... ....+|...++.|+
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~~------~iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGPL------FIGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCEE------EESS-S----------TT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcceE------EEeecC----------CCCCceEEEEEEEE
Confidence 588999999999999999999998876432211 011111222 223221 23668999999999
Q ss_pred EEEEE
Q 028152 147 AKACV 151 (213)
Q Consensus 147 v~~c~ 151 (213)
|...+
T Consensus 146 i~~~a 150 (157)
T PF13385_consen 146 IYNRA 150 (157)
T ss_dssp EESS-
T ss_pred EECcc
Confidence 85443
No 21
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=91.77 E-value=0.4 Score=39.97 Aligned_cols=27 Identities=33% Similarity=0.817 Sum_probs=24.9
Q ss_pred CCcEEEEEEEeC--CeEEEEEcCeEEEEE
Q 028152 68 ADFHTYSILWNP--GHIVFYIDGRPIREF 94 (213)
Q Consensus 68 ~dfHtY~i~W~p--~~I~fyVDg~~vr~~ 94 (213)
.+||.|.|...| ..-.|||||++|++.
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeec
Confidence 579999999988 889999999999985
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=91.42 E-value=3.6 Score=33.63 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=26.1
Q ss_pred CCCcEEEEEEEeCCeEEEEEcCeEEEEEe
Q 028152 67 TADFHTYSILWNPGHIVFYIDGRPIREFK 95 (213)
Q Consensus 67 ~~dfHtY~i~W~p~~I~fyVDg~~vr~~~ 95 (213)
...||.-++.+..+.|++|||++++.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 46899999999999999999999987753
No 23
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=90.38 E-value=4.1 Score=33.73 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=42.5
Q ss_pred CCCCcEEEEEEEe--CCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEe
Q 028152 66 LTADFHTYSILWN--PGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFR 143 (213)
Q Consensus 66 ~~~dfHtY~i~W~--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 143 (213)
....||...+.|+ ...+.+||||+++..-. . ..+..++. ...|.|.- .--.-||.. +. ...|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~-~-~~~~~~~~--~g~l~lG~----~q~~~gg~~--~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS-L-KKGYTVGP--GGSIILGQ----EQDSYGGGF--DA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc-c-cCCCEECC--CCeEEEee----cccCCCCCC--CC-CcceEEEEc
Confidence 4678999999998 45699999999875432 1 11222321 11222221 111113432 32 347888999
Q ss_pred EEEEEEEE
Q 028152 144 NFNAKACV 151 (213)
Q Consensus 144 ~~~v~~c~ 151 (213)
.|+|-.-+
T Consensus 157 ~v~iw~~~ 164 (201)
T cd00152 157 DVNMWDSV 164 (201)
T ss_pred eeEEEccc
Confidence 98874443
No 24
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=90.15 E-value=4.6 Score=33.62 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=42.7
Q ss_pred CCCCcEEEEEEEe--CCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEe
Q 028152 66 LTADFHTYSILWN--PGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFR 143 (213)
Q Consensus 66 ~~~dfHtY~i~W~--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 143 (213)
....||...+.|+ ..++.+||||+++.. . .-..+..++ ..-.|+|.- .-+.+ ||.. +. ...|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~--~~G~lvlGq-~qd~~---gg~f--~~-~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVK--PGGSIILGQ-EQDSY---GGGF--DA-TQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEEC--CCCEEEEEe-cccCC---CCCC--CC-CcceeEEEe
Confidence 3578999999997 456999999998621 1 111122232 122233322 11222 3422 32 346888898
Q ss_pred EEEEEEEEe
Q 028152 144 NFNAKACVW 152 (213)
Q Consensus 144 ~~~v~~c~~ 152 (213)
.|+|-.-+.
T Consensus 157 ~v~iw~~~L 165 (206)
T smart00159 157 DLNMWDSVL 165 (206)
T ss_pred eeEEecccC
Confidence 888744433
No 25
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=86.06 E-value=2.3 Score=33.95 Aligned_cols=32 Identities=19% Similarity=0.553 Sum_probs=28.8
Q ss_pred CCCCcEEEEEEEeCCeEEEEEcCeEEEEEecc
Q 028152 66 LTADFHTYSILWNPGHIVFYIDGRPIREFKNL 97 (213)
Q Consensus 66 ~~~dfHtY~i~W~p~~I~fyVDg~~vr~~~~~ 97 (213)
+..+||++.|.-..++|+.+|||++|.+++..
T Consensus 125 ~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 125 PPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp -TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 46799999999999999999999999998764
No 26
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=80.34 E-value=7.9 Score=33.00 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=38.3
Q ss_pred CCcEEEEEEEeCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEEE
Q 028152 68 ADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFNA 147 (213)
Q Consensus 68 ~dfHtY~i~W~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 147 (213)
..|+.-.|.=....|+|.|||.+|..++.... ...|. . .+|++..- .=+|..|.|++++|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv-----------l------~~G~IGfR-qMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV-----------L------RGGRIGFR-QMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBEEEEE-EETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc-----------c------cCcEeeee-ccchhhhhhccccC
Confidence 36777788889999999999999999876432 11243 1 14554221 23699999999986
No 27
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=78.05 E-value=27 Score=26.30 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCCcEEEEEEEeCCeEEEEEcCeEEEE
Q 028152 67 TADFHTYSILWNPGHIVFYIDGRPIRE 93 (213)
Q Consensus 67 ~~dfHtY~i~W~p~~I~fyVDg~~vr~ 93 (213)
...||.-.|.+....++++|||..+.+
T Consensus 79 dg~Wh~v~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 79 DGQWHSVSVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred CCCEEEEEEEECCCEEEEEECCccEEe
Confidence 457999999999999999999985433
No 28
>smart00282 LamG Laminin G domain.
Probab=60.62 E-value=46 Score=24.83 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCcEEEEEEEeCCeEEEEEcCeEEEE
Q 028152 67 TADFHTYSILWNPGHIVFYIDGRPIRE 93 (213)
Q Consensus 67 ~~dfHtY~i~W~p~~I~fyVDg~~vr~ 93 (213)
...||.-.|.-....+.++|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 357999999999999999999976543
No 29
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=55.49 E-value=16 Score=36.29 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=40.2
Q ss_pred CCCcEEEEEEEeCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCc
Q 028152 67 TADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGL 128 (213)
Q Consensus 67 ~~dfHtY~i~W~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~ 128 (213)
..+||.|.+.-+--.++.||||+...-+.- -.+||. .|-++-.-|=+|-=|- |+.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i----~ddwpl-Hpsk~~tqLvVGACW~--g~~ 495 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLI----TDDWPL-HPSKIETQLVVGACWQ--GRQ 495 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCcee----ccCCcc-CcccccceeEEeeecc--Ccc
Confidence 468999999997666999999976533221 136887 7777777777888887 454
No 30
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=54.54 E-value=57 Score=27.28 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=40.2
Q ss_pred CCcEEEEEEEe--CCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEE
Q 028152 68 ADFHTYSILWN--PGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNF 145 (213)
Q Consensus 68 ~dfHtY~i~W~--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~ 145 (213)
..||+=++.=+ ..+.++||||..+.++.... ..|-.+-| =+=++-.|+- -|+|. ...||.-.|+++
T Consensus 103 ~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~--~~n~~~iG~t--~R~g~-----~~y~f~G~I~~l 170 (190)
T PF02973_consen 103 VTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIP--GLNSVQIGGT--NRAGS-----NAYPFNGTIDNL 170 (190)
T ss_dssp ES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGST--T--EEEESSE--EETTE-----EES--EEEEEEE
T ss_pred ceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCc--CCceEEEcce--EeCCC-----ceecccceEEEE
Confidence 46888888776 67799999998888775432 22322111 0112222321 12332 356999999999
Q ss_pred EEEEEEeC
Q 028152 146 NAKACVWS 153 (213)
Q Consensus 146 ~v~~c~~~ 153 (213)
+|+.++++
T Consensus 171 ~iYn~aLs 178 (190)
T PF02973_consen 171 KIYNRALS 178 (190)
T ss_dssp EEESS---
T ss_pred EEEcCcCC
Confidence 99877654
No 31
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=49.23 E-value=95 Score=25.56 Aligned_cols=70 Identities=14% Similarity=0.452 Sum_probs=42.0
Q ss_pred CCCCcEEEEEE--EeC---CeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEE
Q 028152 66 LTADFHTYSIL--WNP---GHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTA 140 (213)
Q Consensus 66 ~~~dfHtY~i~--W~p---~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~ 140 (213)
....||.+.|. |.+ ..|..++||++|..++... -++..+..++-+-|.-.+ |.+..+. .+-.+
T Consensus 150 ~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~~-------~~~~v 217 (224)
T PF14099_consen 150 ERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPNE-------SDTQV 217 (224)
T ss_dssp -TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC---------SS-E
T ss_pred CCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCcc-------cccEE
Confidence 45789998875 765 6699999999998887632 122235677777776543 2211111 11118
Q ss_pred EEeEEEE
Q 028152 141 SFRNFNA 147 (213)
Q Consensus 141 ~~~~~~v 147 (213)
+||+|++
T Consensus 218 y~D~v~~ 224 (224)
T PF14099_consen 218 YYDNVRI 224 (224)
T ss_dssp EEEEEE-
T ss_pred EeccccC
Confidence 9999875
No 32
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=47.33 E-value=1.6e+02 Score=24.26 Aligned_cols=71 Identities=21% Similarity=0.417 Sum_probs=36.2
Q ss_pred CCCCcEEEEEEEeC--CeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEe
Q 028152 66 LTADFHTYSILWNP--GHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFR 143 (213)
Q Consensus 66 ~~~dfHtY~i~W~p--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 143 (213)
....||.+.+-|+. ..+.+||||+....-.. ..+...|. .. .++|..- - + .-||.. | ....|.-.+.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~--~~g~~i~~-gG-~~vlGQe-Q-d--~~gG~f--d-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTGL--ATGHSIPG-GG-TLVLGQE-Q-D--SYGGGF--D-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEES--STT--B-S-SE-EEEESS--B-S--BTTBTC--S-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccccc--cCCceECC-CC-EEEECcc-c-c--ccCCCc--C-CccEeeEEEe
Confidence 35789999999975 67999999995433221 22334432 22 2222211 1 1 224532 3 2347888887
Q ss_pred EEEE
Q 028152 144 NFNA 147 (213)
Q Consensus 144 ~~~v 147 (213)
+|++
T Consensus 151 ~~~i 154 (195)
T PF00354_consen 151 DFNI 154 (195)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 7775
No 33
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=43.51 E-value=59 Score=26.43 Aligned_cols=49 Identities=27% Similarity=0.615 Sum_probs=35.9
Q ss_pred EEeeEEeCCCC------CceeeEEecCCCCCCcEEEEEEEeCCeEEEEEcCeEEEE
Q 028152 44 VHTNVYTQGKG------DREQQFYLWFDLTADFHTYSILWNPGHIVFYIDGRPIRE 93 (213)
Q Consensus 44 ~~tn~~~~g~g------~r~~~~~l~fd~~~dfHtY~i~W~p~~I~fyVDg~~vr~ 93 (213)
+.-.++.+|+. .+..++++|- .+.+=|.|+|.-..+.+..+++|..+++
T Consensus 73 YEYsL~inGKs~~ky~Ed~~k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~T 127 (187)
T KOG4352|consen 73 YEYSLYINGKSHDKYTEDMTKQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRT 127 (187)
T ss_pred EEEEEEEcCcchHHHHHHhhhheeEEE-EecCCceEEEEEeccceeeEEcCccccc
Confidence 44455666654 2345677774 2455599999999999999999998886
No 34
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=41.24 E-value=1.3e+02 Score=21.49 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=44.8
Q ss_pred CCCcEEEEEEEeCCeEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeeeCCCcccCCCccccCCCCCCeEEEEeEEE
Q 028152 67 TADFHTYSILWNPGHIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWNADDWATRGGLAKTDWSQAPFTASFRNFN 146 (213)
Q Consensus 67 ~~dfHtY~i~W~p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 146 (213)
...||+-.|.=....++..||+............ . .-+....+++.||.-....... .-....|.--+++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~-~-----~~~~~~~~l~iGg~~~~~~~~~--~~~~~~f~Gci~~l~ 124 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS-S-----DSLDPDGSLYIGGLPESNQPSG--SVDTPGFVGCIRDLR 124 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT-H-----HCBESEEEEEESSTTTTCTCTT--SSTTSB-EEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc-e-----ecccCCCCEEEecccCcccccc--ccCCCCcEEEcCeEE
Confidence 5679999999999999999999998876543210 0 0223445577776533111110 001456777777776
Q ss_pred EE
Q 028152 147 AK 148 (213)
Q Consensus 147 v~ 148 (213)
|+
T Consensus 125 vn 126 (128)
T PF02210_consen 125 VN 126 (128)
T ss_dssp ET
T ss_pred EC
Confidence 63
No 35
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=35.55 E-value=63 Score=24.29 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=24.3
Q ss_pred CCCCcEEEEEEEeCCeEEEEEcCeEEEEEe
Q 028152 66 LTADFHTYSILWNPGHIVFYIDGRPIREFK 95 (213)
Q Consensus 66 ~~~dfHtY~i~W~p~~I~fyVDg~~vr~~~ 95 (213)
+.++-|++.+. .-+.++++|||++|-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 46788999988 888999999999996543
No 36
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=34.70 E-value=56 Score=23.13 Aligned_cols=36 Identities=8% Similarity=0.253 Sum_probs=22.6
Q ss_pred eEEEEEcCeEEEEEeccccCCcCCCCCCceeEEEEeee
Q 028152 81 HIVFYIDGRPIREFKNLESFGIPYPKKQSMRMYASLWN 118 (213)
Q Consensus 81 ~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~ 118 (213)
.+.|||||+++.+..... ...|+...|..-.|.+-+
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEEc
Confidence 688999999996544332 233443466666666644
No 37
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=29.75 E-value=6e+02 Score=27.37 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=47.5
Q ss_pred EEEeeCCCCCceEeeeEEecCCCCCCeeEEEEcCCCCCCceEEEeeEEeCCCC---Cce-eeEEecCCC-CCCcEEEEEE
Q 028152 2 QLKLVPNNSAGTVTAYYLKSPGASWDEIDFEFLGNLSGNPYIVHTNVYTQGKG---DRE-QQFYLWFDL-TADFHTYSIL 76 (213)
Q Consensus 2 riKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g---~r~-~~~~l~fd~-~~dfHtY~i~ 76 (213)
++|.+...+.|+ .|++++...+-|-+|..+. .+..++-..... .++ ..+.+..-. ..-||.-.|+
T Consensus 205 s~~Fkt~~sdGv----llh~eg~QGd~itlql~~~------kl~l~ld~G~~~~~~s~~~~sis~GslLdD~hWHsV~i~ 274 (1306)
T KOG3516|consen 205 SLKFKTMQSDGV----LLHGEGQQGDYITLQLIGG------KLVLILDLGNSKLPSSRTPTSISAGSLLDDQHWHSVRIE 274 (1306)
T ss_pred EEEEEeecccee----EEEcccCCCCEEEEEEeCC------EEEEEEecCCccCccccCcceeecccccCCCcceEEEEE
Confidence 455555555554 3666666677777788875 233333221111 111 223333211 2457777777
Q ss_pred EeCCeEEEEEcCeEEEEE
Q 028152 77 WNPGHIVFYIDGRPIREF 94 (213)
Q Consensus 77 W~p~~I~fyVDg~~vr~~ 94 (213)
=.-..|.|.||+...+.-
T Consensus 275 r~~~~vnftvD~~~~~fr 292 (1306)
T KOG3516|consen 275 RQGRQVNFTVDGVVHHFR 292 (1306)
T ss_pred ecCcEEEEEEccceEeec
Confidence 788999999999998743
No 38
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=27.63 E-value=3.2e+02 Score=27.41 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCCcEEEEEEEeCCeEEEEEcCeEEEEE
Q 028152 67 TADFHTYSILWNPGHIVFYIDGRPIREF 94 (213)
Q Consensus 67 ~~dfHtY~i~W~p~~I~fyVDg~~vr~~ 94 (213)
+..||+-++--+.+.|+=++||+++.+.
T Consensus 610 ~~~WhtltL~~~g~~~ta~lng~~l~~~ 637 (669)
T PF02057_consen 610 AGKWHTLTLTISGSTATAMLNGTVLWTD 637 (669)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEEECCEEEEEECCEEeEEe
Confidence 4679999999999999999999999764
No 39
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=27.31 E-value=1.9e+02 Score=21.76 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=42.7
Q ss_pred CCCeeEEEEcCCCCCCceEEEeeEEeC-----------CCCCceeeEE-ecCCCCCCcEEEEEEEeCCeEEEEEcCeEEE
Q 028152 25 SWDEIDFEFLGNLSGNPYIVHTNVYTQ-----------GKGDREQQFY-LWFDLTADFHTYSILWNPGHIVFYIDGRPIR 92 (213)
Q Consensus 25 ~~~EIDiE~lG~~~g~p~~~~tn~~~~-----------g~g~r~~~~~-l~fd~~~dfHtY~i~W~p~~I~fyVDg~~vr 92 (213)
....+-|.+..... ...+|.|.--. |.-++|++.. .+|.+. +...-.|.=+++....+|||+.+.
T Consensus 25 ~~~~f~Inl~~~~~--~i~lH~n~rf~~~~IV~Ns~~~g~Wg~Eer~~~~pf~~g-~~F~l~i~~~~~~f~i~vng~~~~ 101 (127)
T cd00070 25 NAKRFSINLGTGSS--DIALHFNPRFDENVIVRNSFLNGNWGPEERSGGFPFQPG-QPFELTILVEEDKFQIFVNGQHFF 101 (127)
T ss_pred CCCEEEEEEecCCC--CEEEEEeeeCCCCEEEEcCCCCCEecHhhccCCCCCCCC-CeEEEEEEEcCCEEEEEECCEeEE
Confidence 35566666665421 34666665322 2223444443 455543 444888899999999999999998
Q ss_pred EEe
Q 028152 93 EFK 95 (213)
Q Consensus 93 ~~~ 95 (213)
.|.
T Consensus 102 ~F~ 104 (127)
T cd00070 102 SFP 104 (127)
T ss_pred Eec
Confidence 775
No 40
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=23.73 E-value=89 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.4
Q ss_pred CeEEEEEcCeEEEEEecc
Q 028152 80 GHIVFYIDGRPIREFKNL 97 (213)
Q Consensus 80 ~~I~fyVDg~~vr~~~~~ 97 (213)
+.|+|+|||+++......
T Consensus 2 ~~v~i~idG~~v~~~~G~ 19 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGE 19 (82)
T ss_dssp EEEEEEETTEEEEEEET-
T ss_pred CEEEEEECCEEEEEcCCC
Confidence 469999999999887654
Done!