AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>028153
MKQERDVLVIACAPMASASPAAAAVSTVSPVIASSLTPQQTFPTPSPFSFSVASTRWSSR
PSIHFSNLFLRFLALVFCFVSALSLAAPSPKKKGQQPSSFTGYPELVYSFTVDILAFAYS
SFQLFKGICDIAHRGIIIPDKISDYISFILDQLMGYLLISSSSVAIPVIQDIDQMHSLWK
AAIVSTCMSFVTFVVIVSCTLLSGYKLCKRIIW
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT4G11655 AT4G11655 AT4G11655	protein from Arabidopsis thaliana	5.3e-40
BLAST match view associations BLAST with AT2G36330 AT2G36330 AT2G36330	protein from Arabidopsis thaliana	7.3e-14
BLAST match view associations BLAST with AT5G40300 AT5G40300 AT5G40300	protein from Arabidopsis thaliana	1.9e-12
BLAST match view associations BLAST with AT5G62820 AT5G62820 AT5G62820	protein from Arabidopsis thaliana	4.0e-12
BLAST match view associations BLAST with AT2G38480 AT2G38480 AT2G38480	protein from Arabidopsis thaliana	2.0e-08
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028153
        (213 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1006230404 - symbol:AT4G11655 "AT4G11655" spec...   426  5.3e-40   1
TAIR|locus:2049500 - symbol:AT2G36330 "AT2G36330" species...   180  7.3e-14   1
TAIR|locus:2170603 - symbol:AT5G40300 "AT5G40300" species...   167  1.9e-12   1
TAIR|locus:2170703 - symbol:AT5G62820 "AT5G62820" species...   166  4.0e-12   1
TAIR|locus:2057202 - symbol:AT2G38480 "AT2G38480" species...   128  2.0e-08   1


>TAIR|locus:1006230404 [details] [associations]
            symbol:AT4G11655 "AT4G11655" species:3702 "Arabidopsis
            thaliana" [GO:0016020 "membrane" evidence=ISS] GO:GO:0016021
            GO:GO:0005886 EMBL:CP002687 GenomeReviews:CT486007_GR
            InterPro:IPR006702 Pfam:PF04535 EMBL:AL049500 EMBL:AY299293
            IPI:IPI00524562 RefSeq:NP_974535.1 UniGene:At.47293
            EnsemblPlants:AT4G11655.1 GeneID:2745700 KEGG:ath:AT4G11655
            TAIR:At4g11655 eggNOG:NOG306897 HOGENOM:HOG000090375
            InParanoid:Q3EA54 OMA:GVCDITH PhylomeDB:Q3EA54
            ProtClustDB:CLSN2681322 Genevestigator:Q3EA54 Uniprot:Q3EA54
        Length = 208

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 90/168 (53%), Positives = 116/168 (69%)

Query:    53 ASTRWSSR-PSIHFSNLFLRFLALVFCFVSALSLAA----PSPKKKGQQPSSFTGYPELV 107
             +++R+SSR  S+H   L LRF+ +V CFVSALSLA     PS +   Q  SSF  YPEL+
Sbjct:    41 SASRFSSRRASVHVIGLVLRFITMVLCFVSALSLAVNVQRPSKRHLTQNSSSFASYPELL 100

Query:   108 YSFTVDILAFAYSSFQLFKGICDIAHRGIIIPDKISDYISFILDQLMGYLLISSSSVAIP 167
             Y F V ++ F Y+S Q FKG+CDI HRG++I + +SDYISFI DQ++ YLL+SSSSVAI 
Sbjct:   101 YCFGVAVIGFVYTSLQTFKGVCDITHRGVLISEPLSDYISFIFDQVICYLLVSSSSVAIA 160

Query:   168 VIQDI--DQMHSLWKAAIVSTCMSFVTFVVIVSCTLLSGYKLCKRIIW 213
              IQ I  D + +L   +IVS  MSF  F+V+    LLSGYKLCKR +W
Sbjct:   161 WIQHINEDAIKTLRNNSIVSVSMSFSAFLVLTLSGLLSGYKLCKRFMW 208


>TAIR|locus:2049500 [details] [associations]
            symbol:AT2G36330 "AT2G36330" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0016020 "membrane" evidence=ISS]
            [GO:0005886 "plasma membrane" evidence=IDA] GO:GO:0016021
            GO:GO:0005886 EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006921
            InterPro:IPR006702 Pfam:PF04535 EMBL:BT002934 IPI:IPI00528860
            PIR:D84779 RefSeq:NP_181174.2 UniGene:At.44754 PRIDE:Q84WP5
            EnsemblPlants:AT2G36330.1 GeneID:818206 KEGG:ath:AT2G36330
            TAIR:At2g36330 eggNOG:NOG256024 HOGENOM:HOG000029077
            InParanoid:Q84WP5 OMA:DTSMAIV PhylomeDB:Q84WP5
            ProtClustDB:CLSN2920578 Genevestigator:Q84WP5 Uniprot:Q84WP5
        Length = 283

 Score = 180 (68.4 bits), Expect = 7.3e-14, P = 7.3e-14
 Identities = 53/163 (32%), Positives = 81/163 (49%)

Query:    53 ASTRWSSRPSI-HFSNLFLRFLALVFCFVSALSLAAPSPKKKGQQPSSFTGYPELVYSFT 111
             A  R S R  +  FS L  R   +V   +S   +AA   K KG    SF  Y E  +  +
Sbjct:   121 AILRRSRREEVVKFSALGFRLSEVVLALISFSIMAAD--KTKGWSGDSFDRYKEYRFCLS 178

Query:   112 VDILAFAYSSFQLFKGICDIAHRGI----IIPDKISDYISFILDQLMGYLLISSSSVAIP 167
             V+++AF YSSFQ     CD+A+  +    +I   +     FI+DQ++ YLL+S+S+ A+ 
Sbjct:   179 VNVVAFVYSSFQA----CDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVT 234

Query:   168 VIQD-IDQM--HSLWKAAIVSTCMSFVTFVVIVSCTLLSGYKL 207
              + D +         + A  S  MSF+ F+     +L+SGY L
Sbjct:   235 RVDDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLISGYNL 277


>TAIR|locus:2170603 [details] [associations]
            symbol:AT5G40300 "AT5G40300" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016020 "membrane" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=IDA] GO:GO:0016021 GO:GO:0005886
            EMBL:CP002688 GenomeReviews:BA000015_GR InterPro:IPR006702
            Pfam:PF04535 HOGENOM:HOG000029077 EMBL:AB006702 EMBL:BT010719
            EMBL:BT011792 IPI:IPI00547305 RefSeq:NP_198846.1 UniGene:At.30291
            PaxDb:Q9FNE8 PRIDE:Q9FNE8 EnsemblPlants:AT5G40300.1 GeneID:834028
            KEGG:ath:AT5G40300 TAIR:At5g40300 eggNOG:NOG247391
            InParanoid:Q9FNE8 PhylomeDB:Q9FNE8 Genevestigator:Q9FNE8
            Uniprot:Q9FNE8
        Length = 270

 Score = 167 (63.8 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 54/164 (32%), Positives = 80/164 (48%)

Query:    55 TRWSSRPSIHFSNLFLRFLALVFCFVSALSLAAPSPKKKGQQPSSFTGYPELVYSFTVDI 114
             ++W+S   I  + L  R +A V C VS  S+   S + KG    SF  Y E  +    ++
Sbjct:   113 SKWASL--IRKALLGFRVIAFVSCLVS-FSVMV-SDRDKGWAHDSFYNYKEFRFCLAANV 168

Query:   115 LAFAYSSFQLFKGICDIAHR-GIIIP---DKISDYISFILDQLMGYLLISSSSVAIPVIQ 170
             + F YS F     ICD+ +     I      +  ++ F LDQ++ YLL S+S+ A   I+
Sbjct:   169 IGFVYSGFM----ICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSAS--IR 222

Query:   171 DIDQMHSLWKA------AIVSTCMSFVTFVVIVSCTLLSGYKLC 208
              +D   S W A      A  S  +S+V+FV    C+L SGY LC
Sbjct:   223 -VDDWQSNWGADKFPDLARASVALSYVSFVAFAFCSLASGYALC 265


>TAIR|locus:2170703 [details] [associations]
            symbol:AT5G62820 "AT5G62820" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016020 "membrane" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=IDA] GO:GO:0016021 GO:GO:0005886
            EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB009053
            InterPro:IPR006702 Pfam:PF04535 HOGENOM:HOG000029077 EMBL:BT022001
            EMBL:BT023479 IPI:IPI00540013 RefSeq:NP_201088.1 UniGene:At.5422
            UniGene:At.71286 PaxDb:Q501G6 PRIDE:Q501G6
            EnsemblPlants:AT5G62820.1 GeneID:836403 KEGG:ath:AT5G62820
            TAIR:At5g62820 eggNOG:NOG261526 InParanoid:Q501G6 OMA:QMATASI
            PhylomeDB:Q501G6 ProtClustDB:CLSN2916796 Genevestigator:Q501G6
            Uniprot:Q501G6
        Length = 297

 Score = 166 (63.5 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 44/148 (29%), Positives = 69/148 (46%)

Query:    63 IHFSNLFLRFLALVFCFVSALSLAAPSPKKKGQQPSSFTGYPELVYSFTVDILAFAYSSF 122
             +  + L  R   ++ C +S   +AA   K +G    S+  Y E  Y   V+++AF YS+F
Sbjct:   146 VSLTALGFRITEVILCVISFSIMAAD--KTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAF 203

Query:   123 QLFKGICDIAHRGIIIPDKISDYISFILDQLMGYLLISSSSVAIPVIQD-IDQM--HSLW 179
             +     C IA    +I     D   F +DQL+ YLL+S+SS A   + D +         
Sbjct:   204 EACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCAATRVDDWVSNWGKDEFT 263

Query:   180 KAAIVSTCMSFVTFVVIVSCTLLSGYKL 207
             + A  S  +SF+ F       L+S Y+L
Sbjct:   264 QMATASIAVSFLAFGAFAVSALISSYRL 291


>TAIR|locus:2057202 [details] [associations]
            symbol:AT2G38480 "AT2G38480" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0016020 "membrane" evidence=ISS] [GO:0005886
            "plasma membrane" evidence=IDA] GO:GO:0016021 GO:GO:0005886
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC005499
            InterPro:IPR006702 Pfam:PF04535 EMBL:AC004683 EMBL:AF370348
            EMBL:AY062978 EMBL:AY085658 IPI:IPI00519508 PIR:T02497
            RefSeq:NP_565891.1 UniGene:At.13123 UniGene:At.48567 PaxDb:Q8LE26
            PRIDE:Q8LE26 EnsemblPlants:AT2G38480.1 GeneID:818430
            KEGG:ath:AT2G38480 TAIR:At2g38480 eggNOG:NOG285033
            HOGENOM:HOG000239985 InParanoid:Q8LE26 OMA:ASISMAF PhylomeDB:Q8LE26
            ProtClustDB:CLSN2917269 Genevestigator:Q8LE26 Uniprot:Q8LE26
        Length = 188

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 42/154 (27%), Positives = 71/154 (46%)

Query:    56 RWSSRPSIHFSNLFLRFLALVFCFVSALSLAAPSPKKKGQQPSSFTGYPELVYSFTVDIL 115
             RW     I  ++   R + L+F  ++ L + +    K G    +F  Y E  Y   + I+
Sbjct:    37 RWKREDLIKKASPITRGICLLFSLIAFLIMVS---NKHGYG-RNFNDYEEYRYVLAISII 92

Query:   116 AFAYSSFQLFKGICDIAHRGIIIPDKISDYISFILDQLMGYLLISSSSVAIPVIQDI--D 173
             +  Y+++Q F      + R I    + S  + F  DQ++ YLLIS++S AIP+       
Sbjct:    93 STLYTAWQTF---AHFSKREIF-DRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREG 148

Query:   174 QMHSLWKAAIVSTCMSFVTFVVIVSCTLLSGYKL 207
             Q +    +A  +  M+   F+ +    L SGYKL
Sbjct:   149 QDNIFTDSAASAISMAIFAFIALALSALFSGYKL 182


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.139   0.425    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       173   0.00097  108 3  11 22  0.42    31
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  154 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.68u 0.12s 16.80t   Elapsed:  00:00:03
  Total cpu time:  16.68u 0.12s 16.80t   Elapsed:  00:00:03
  Start:  Fri May 10 04:59:40 2013   End:  Fri May 10 04:59:43 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
