BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028153
         (213 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
 pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
          Length = 626

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 124 LFKGICDIAHRGIIIPDKISDYISFILDQLMGYLLISSSSVA-------------IPVIQ 170
           LF+ I   AHRG  +P  I  Y+   LD+      I  S V              + VI+
Sbjct: 427 LFETIFSTAHRGSALPLAIK-YMFDFLDEQADKHQIHDSDVRHTWKSNCLPLRFWVNVIK 485

Query: 171 DIDQMHSLWKAAIVSTCMSFVTFVVIVSCTLLSGYKLCK 209
           +   +  + K +I   C+S V    + SC+  S +KL K
Sbjct: 486 NPQFVFDIHKNSITDACLSVVAQTFMDSCS-TSEHKLGK 523


>pdb|3BL5|A Chain A, Crystal Structure Of Quec From Bacillus Subtilis: An
           Enzyme Involved In Preq1 Biosynthesis
 pdb|3BL5|B Chain B, Crystal Structure Of Quec From Bacillus Subtilis: An
           Enzyme Involved In Preq1 Biosynthesis
 pdb|3BL5|C Chain C, Crystal Structure Of Quec From Bacillus Subtilis: An
           Enzyme Involved In Preq1 Biosynthesis
 pdb|3BL5|D Chain D, Crystal Structure Of Quec From Bacillus Subtilis: An
           Enzyme Involved In Preq1 Biosynthesis
 pdb|3BL5|E Chain E, Crystal Structure Of Quec From Bacillus Subtilis: An
           Enzyme Involved In Preq1 Biosynthesis
 pdb|3BL5|F Chain F, Crystal Structure Of Quec From Bacillus Subtilis: An
           Enzyme Involved In Preq1 Biosynthesis
          Length = 219

 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 92  KKGQQPSSFTGYPELVYSFTVDILAFAYSSFQLFKGICDIAHRGIIIPDKISDYIS 147
           K G+ PS+F     LV+     ILA+   +  +  G+C+    G   PD   +++ 
Sbjct: 85  KDGELPSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSG--YPDCRDEFVK 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.140    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,601,840
Number of Sequences: 62578
Number of extensions: 158928
Number of successful extensions: 273
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 2
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)