Query 028153
Match_columns 213
No_of_seqs 114 out of 213
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l1a_A Formin-C, @; fruiting B 29.7 21 0.00072 26.3 1.5 15 31-45 19-33 (107)
2 1v54_J Cytochrome C oxidase po 14.7 82 0.0028 21.2 1.9 27 101-127 27-53 (59)
3 2y69_J Cytochrome C oxidase po 11.0 89 0.0031 22.3 1.2 27 101-127 48-74 (80)
4 2jrw_A Cyclic extended PEP.1; 7.9 1.7E+02 0.0058 16.4 1.3 11 38-48 13-23 (26)
5 3iwv_A 5-hydroxyisourate hydro 7.5 97 0.0033 24.3 0.2 16 38-53 117-135 (138)
6 3mc9_A ALR2269 protein; polype 7.3 93 0.0032 26.7 0.0 15 38-52 30-44 (316)
7 2h0e_A Transthyretin-like prot 6.7 1E+02 0.0034 23.6 -0.1 16 38-53 100-118 (121)
8 1jb0_X Photosystem I subunit P 5.7 2.8E+02 0.0096 16.8 1.6 13 108-120 18-30 (35)
9 1flt_X FLT-1, VGR1, FMS-like t 5.7 1.8E+02 0.0061 20.8 0.8 12 4-15 19-30 (95)
10 3qva_A Transthyretin-like prot 5.5 1.2E+02 0.0042 23.0 -0.2 15 39-53 96-113 (116)
No 1
>2l1a_A Formin-C, @; fruiting BODY formation, actin binding protein; NMR {Dictyostelium discoideum}
Probab=29.73 E-value=21 Score=26.33 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=12.1
Q ss_pred cccCCCCCCCCCCCC
Q 028153 31 VIASSLTPQQTFPTP 45 (213)
Q Consensus 31 ~~~~~~~~~~~~~~p 45 (213)
.+|++.|||||-.-|
T Consensus 19 ehr~s~tpqq~~q~~ 33 (107)
T 2l1a_A 19 EHRTSSTPQQPQQNP 33 (107)
T ss_dssp SSCSSSSCSCCSSCC
T ss_pred ccCCCCCCcccccCC
Confidence 479999999976665
No 2
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=14.75 E-value=82 Score=21.17 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=21.5
Q ss_pred cCCCceeehhhHHHHHHHHHHHHHHHH
Q 028153 101 TGYPELVYSFTVDILAFAYSSFQLFKG 127 (213)
Q Consensus 101 ~d~~afrYlvaanvI~~~YSllQl~~~ 127 (213)
.|.-=|++.+++.+++.+|++.++...
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667899999999999998887654
No 3
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=11.01 E-value=89 Score=22.33 Aligned_cols=27 Identities=19% Similarity=-0.012 Sum_probs=22.0
Q ss_pred cCCCceeehhhHHHHHHHHHHHHHHHH
Q 028153 101 TGYPELVYSFTVDILAFAYSSFQLFKG 127 (213)
Q Consensus 101 ~d~~afrYlvaanvI~~~YSllQl~~~ 127 (213)
.|.-=|++.+++.+++.+|++.++...
T Consensus 48 sd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 48 TDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667999999999999999887654
No 4
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=7.87 E-value=1.7e+02 Score=16.36 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=7.3
Q ss_pred CCCCCCCCCCC
Q 028153 38 PQQTFPTPSPF 48 (213)
Q Consensus 38 ~~~~~~~psp~ 48 (213)
..+|.|+|+|-
T Consensus 13 serpyhppppc 23 (26)
T 2jrw_A 13 SERPYHPPPPC 23 (26)
T ss_dssp CSSSCCSCSCC
T ss_pred ccCCCCCCCCC
Confidence 35677777774
No 5
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=7.48 E-value=97 Score=24.31 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=13.6
Q ss_pred CCCCCCCC---CCCccccc
Q 028153 38 PQQTFPTP---SPFSFSVA 53 (213)
Q Consensus 38 ~~~~~~~p---sp~~~~~~ 53 (213)
++||+|-| ||||.++.
T Consensus 117 ~~~HYHVPLLlSP~gYSTY 135 (138)
T 3iwv_A 117 TSQHYHVPLLLSRFSYSTT 135 (138)
T ss_dssp TTSCEECCEEEETTEEEEE
T ss_pred CCCCeEEeEEecCCcceee
Confidence 68999999 99998764
No 6
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=7.25 E-value=93 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcccc
Q 028153 38 PQQTFPTPSPFSFSV 52 (213)
Q Consensus 38 ~~~~~~~psp~~~~~ 52 (213)
.||+||+|-|...+.
T Consensus 30 ~~~~~~~~~~~~~~~ 44 (316)
T 3mc9_A 30 TEQPAPAPAPGTTPG 44 (316)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCCCCCC
Confidence 577888877665443
No 7
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=6.68 E-value=1e+02 Score=23.60 Aligned_cols=16 Identities=38% Similarity=0.889 Sum_probs=13.4
Q ss_pred CCCCCCCC---CCCccccc
Q 028153 38 PQQTFPTP---SPFSFSVA 53 (213)
Q Consensus 38 ~~~~~~~p---sp~~~~~~ 53 (213)
+.||+|-| ||||.++.
T Consensus 100 ~~~HYHVPLLlSP~gYSTY 118 (121)
T 2h0e_A 100 PDAHYHIPLLLSPFGYQVY 118 (121)
T ss_dssp TTSEEECCEEEETTEEEEC
T ss_pred CCCCeEEeEEecCCccccc
Confidence 57999999 99998764
No 8
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.74 E-value=2.8e+02 Score=16.78 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=9.9
Q ss_pred ehhhHHHHHHHHH
Q 028153 108 YSFTVDILAFAYS 120 (213)
Q Consensus 108 YlvaanvI~~~YS 120 (213)
.++++|-++++|=
T Consensus 18 llLaINflVAayY 30 (35)
T 1jb0_X 18 LLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5778888888774
No 9
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=5.69 E-value=1.8e+02 Score=20.79 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=8.6
Q ss_pred cCceEEEEeccC
Q 028153 4 ERDVLVIACAPM 15 (213)
Q Consensus 4 ~~~~~~~~~~~~ 15 (213)
|+|-++|+||+-
T Consensus 19 e~~~~viPC~vT 30 (95)
T 1flt_X 19 EGRELVIPCRVT 30 (95)
T ss_dssp TTSCEEECCCBS
T ss_pred cCCcEEEEeEcC
Confidence 445589999873
No 10
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=5.55 E-value=1.2e+02 Score=23.01 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.2
Q ss_pred CCCCCCC---CCCccccc
Q 028153 39 QQTFPTP---SPFSFSVA 53 (213)
Q Consensus 39 ~~~~~~p---sp~~~~~~ 53 (213)
.||+|-| ||||.++.
T Consensus 96 ~~HYHVPLLlSP~gYSTY 113 (116)
T 3qva_A 96 EDHFHLPFLIAPGGWSTY 113 (116)
T ss_dssp -CCEECCEEEETTEEEEE
T ss_pred CCCEEEeEEecCCccccc
Confidence 7999999 99998764
Done!