Query 028153
Match_columns 213
No_of_seqs 114 out of 213
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 11:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028153.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028153hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fltx_ b.1.1.4 (X:) Second do 8.1 53 0.0038 22.0 0.8 14 1-15 17-30 (95)
2 d1jb0x_ f.23.20.1 (X:) Subunit 7.7 93 0.0068 16.5 1.6 13 109-121 13-25 (29)
3 d2gy9q1 b.40.4.5 (Q:5-82) Ribo 5.6 1.4E+02 0.01 19.2 1.9 14 3-16 49-63 (78)
4 d1ryia1 c.3.1.2 (A:1-218,A:307 5.5 89 0.0065 22.7 1.0 19 1-20 1-19 (276)
5 d1c0pa1 c.4.1.2 (A:999-1193,A: 5.3 1.1E+02 0.0083 21.3 1.4 21 1-22 3-23 (268)
6 d2p8ta2 d.74.4.2 (A:83-199) Hy 5.2 1.4E+02 0.01 20.9 1.9 11 2-12 76-86 (117)
7 d1xmpa_ c.23.8.1 (A:) N5-CAIR 5.0 1.3E+02 0.0091 22.1 1.5 26 7-32 58-83 (155)
8 d1oo2a_ b.3.4.1 (A:) Transthyr 4.8 54 0.004 22.9 -0.8 16 37-52 92-110 (116)
9 d1ppje2 f.23.12.1 (E:1-69) Iro 4.4 2.6E+02 0.019 17.6 2.6 18 150-167 31-48 (69)
10 d1o4va_ c.23.8.1 (A:) N5-CAIR 4.3 1.3E+02 0.0094 22.3 1.1 29 4-32 54-82 (169)
No 1
>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.05 E-value=53 Score=21.97 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=9.3
Q ss_pred CcccCceEEEEeccC
Q 028153 1 MKQERDVLVIACAPM 15 (213)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (213)
|||.+| +||+||+-
T Consensus 17 v~eg~~-~vIPC~vT 30 (95)
T d1fltx_ 17 MTEGRE-LVIPCRVT 30 (95)
T ss_dssp ECTTSC-EEECCCBS
T ss_pred EeCCCC-EEEEccCC
Confidence 355555 58999874
No 2
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=7.74 E-value=93 Score=16.51 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHH
Q 028153 109 SFTVDILAFAYSS 121 (213)
Q Consensus 109 lvaanvI~~~YSl 121 (213)
++++|-++++|-+
T Consensus 13 llainflvaayyf 25 (29)
T d1jb0x_ 13 LLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777777743
No 3
>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}
Probab=5.57 E-value=1.4e+02 Score=19.17 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=10.0
Q ss_pred ccCceEEE-EeccCC
Q 028153 3 QERDVLVI-ACAPMA 16 (213)
Q Consensus 3 ~~~~~~~~-~~~~~~ 16 (213)
++||.|.| .|||+.
T Consensus 49 ~~GD~V~I~e~rPlS 63 (78)
T d2gy9q1 49 GIGDVVEIRECRPLS 63 (78)
T ss_dssp CTTCEEEEEECSCSS
T ss_pred ccccEEEEEEcCcCC
Confidence 46788776 788864
No 4
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}
Probab=5.55 E-value=89 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=11.9
Q ss_pred CcccCceEEEEeccCCCCCc
Q 028153 1 MKQERDVLVIACAPMASASP 20 (213)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (213)
||++-|++||- .-++|.|=
T Consensus 1 m~~~~DvvIIG-aGi~Gls~ 19 (276)
T d1ryia1 1 MKRHYEAVVIG-GGIIGSAI 19 (276)
T ss_dssp CCSEEEEEEEC-CSHHHHHH
T ss_pred CCccCCEEEEC-cCHHHHHH
Confidence 89999977763 33444433
No 5
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Probab=5.27 E-value=1.1e+02 Score=21.30 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=11.9
Q ss_pred CcccCceEEEEeccCCCCCccc
Q 028153 1 MKQERDVLVIACAPMASASPAA 22 (213)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (213)
|++.|++ ||+-.-++|.+=|-
T Consensus 3 ~~~~~kV-vVIGaGiaGl~~A~ 23 (268)
T d1c0pa1 3 MHSQKRV-VVLGSGVIGLSSAL 23 (268)
T ss_dssp CCCSCEE-EEECCSHHHHHHHH
T ss_pred CCCCCcE-EEECccHHHHHHHH
Confidence 7777774 44454555555443
No 6
>d2p8ta2 d.74.4.2 (A:83-199) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.22 E-value=1.4e+02 Score=20.91 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=9.4
Q ss_pred cccCceEEEEe
Q 028153 2 KQERDVLVIAC 12 (213)
Q Consensus 2 ~~~~~~~~~~~ 12 (213)
.+|+|.+||.|
T Consensus 76 ~eeGD~vVVt~ 86 (117)
T d2p8ta2 76 YEDGDAVIITW 86 (117)
T ss_dssp CCTTCEEEEEE
T ss_pred cccCCEEEEEe
Confidence 37899999999
No 7
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=4.96 E-value=1.3e+02 Score=22.09 Aligned_cols=26 Identities=38% Similarity=0.371 Sum_probs=23.1
Q ss_pred eEEEEeccCCCCCccccccccccccc
Q 028153 7 VLVIACAPMASASPAAAAVSTVSPVI 32 (213)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (213)
.++|+++-|++.=|.-.++-|..||+
T Consensus 58 ~viIa~AG~aa~Lpgvva~~t~~PVI 83 (155)
T d1xmpa_ 58 KVIIAGAGGAAHLPGMVAAKTNLPVI 83 (155)
T ss_dssp CEEEEEEESSCCHHHHHHTTCCSCEE
T ss_pred eEEEeecccCCCchhHHHHhccceEE
Confidence 48999999999999998888888887
No 8
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]}
Probab=4.76 E-value=54 Score=22.85 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.3
Q ss_pred CCCCCCCCC---CCCcccc
Q 028153 37 TPQQTFPTP---SPFSFSV 52 (213)
Q Consensus 37 ~~~~~~~~p---sp~~~~~ 52 (213)
.++||+|=| ||||.++
T Consensus 92 d~~~hYHvPlllSP~gYST 110 (116)
T d1oo2a_ 92 EGHGHYTLALLLSPFSYTT 110 (116)
T ss_dssp SSSCCEEEEEEEETTEEEE
T ss_pred CCCCCeeEEEEEcCCccce
Confidence 468899999 9999765
No 9
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.36 E-value=2.6e+02 Score=17.60 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHhhhhhHH
Q 028153 150 LDQLMGYLLISSSSVAIP 167 (213)
Q Consensus 150 ~DQv~aYLL~SAasAAa~ 167 (213)
..+.++||+..+.+++..
T Consensus 31 ~Rk~fsYl~~g~~~v~~a 48 (69)
T d1ppje2 31 ARKGFSYLVTATTTVGVA 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhceehhhhhhhHHHHHH
Confidence 348999988887776655
No 10
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=4.30 E-value=1.3e+02 Score=22.32 Aligned_cols=29 Identities=34% Similarity=0.248 Sum_probs=24.3
Q ss_pred cCceEEEEeccCCCCCccccccccccccc
Q 028153 4 ERDVLVIACAPMASASPAAAAVSTVSPVI 32 (213)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (213)
.+-.++|+++-|++.-|.-.++-|.-||+
T Consensus 54 ~~~~viIa~AG~aa~LpgvvA~~t~~PVI 82 (169)
T d1o4va_ 54 RGIEVIIAGAGGAAHLPGMVASITHLPVI 82 (169)
T ss_dssp TTCCEEEEEEESSCCHHHHHHHHCSSCEE
T ss_pred cCCeEEEEeecCCcCchHHHHHhcceeEE
Confidence 34468899999999999998888888887
Done!