BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028154
MDKFLLNARHALHCLVSGCDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTI
GYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKR
NKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENH
FGELESIILETPAIQVHLEVQKYLVSLCNDIGK

High Scoring Gene Products

Symbol, full name Information P value
AT1G34570 protein from Arabidopsis thaliana 2.0e-31
EMB2756
EMBRYO DEFECTIVE 2756
protein from Arabidopsis thaliana 8.9e-07
YAE1
Protein that forms a complex with Lto1p and Rli1p
gene from Saccharomyces cerevisiae 3.5e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028154
        (213 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2009333 - symbol:AT1G34570 "AT1G34570" species...   345  2.0e-31   1
TAIR|locus:2009253 - symbol:EMB2756 "EMBRYO DEFECTIVE 275...   133  8.9e-07   1
SGD|S000003828 - symbol:YAE1 "Protein that forms a comple...   102  3.5e-05   1


>TAIR|locus:2009333 [details] [associations]
            symbol:AT1G34570 "AT1G34570" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 InterPro:IPR019191 Pfam:PF09811
            IPI:IPI00528030 RefSeq:NP_564448.1 UniGene:At.20694 PRIDE:F4HV08
            EnsemblPlants:AT1G34570.1 GeneID:840360 KEGG:ath:AT1G34570
            OMA:LDDPFYG Uniprot:F4HV08
        Length = 208

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 73/165 (44%), Positives = 111/165 (67%)

Query:    37 NEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVR 96
             +E++     LD E ++RR +FH+ GYRDG++ GKE  AQEG+N G+KES  +GY +G+VR
Sbjct:    44 DEDYSEARVLDNENEQRRVKFHSAGYRDGIVVGKEAIAQEGYNFGYKESVLAGYKFGIVR 103

Query:    97 GVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSE 156
             GV+SAL  LP E +E LI+ QE R KFQ L+ SVH+LST  A+K F++ + TK+  E+S 
Sbjct:   104 GVSSALAFLPVEFREKLIDEQETREKFQKLHSSVHALSTEVAMKQFYETLTTKQGEEKS- 162

Query:   157 GAEG--GSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLE 199
             G EG    +V+G  +  +  + L ++  EL S++ ++P I+V  +
Sbjct:   163 GEEGPDSCSVSGSCSGVNVTADLGSYVTELSSLLDKSPTIEVKFD 207


>TAIR|locus:2009253 [details] [associations]
            symbol:EMB2756 "EMBRYO DEFECTIVE 2756" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006672 "ceramide metabolic process" evidence=IEA] [GO:0009793
            "embryo development ending in seed dormancy" evidence=NAS]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0046686
            "response to cadmium ion" evidence=IEP] [GO:0016757 "transferase
            activity, transferring glycosyl groups" evidence=ISM] EMBL:CP002684
            GO:GO:0046686 InterPro:IPR006852 Pfam:PF04765 IPI:IPI00539900
            RefSeq:NP_174715.2 UniGene:At.51939 PRIDE:F4HV06
            EnsemblPlants:AT1G34550.1 GeneID:840358 KEGG:ath:AT1G34550
            OMA:SEYWEPR ArrayExpress:F4HV06 Uniprot:F4HV06
        Length = 735

 Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 32/84 (38%), Positives = 49/84 (58%)

Query:    98 VTSALVCLPNELKEMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQS-- 155
             + + L  LP+EL+E LI+ QE R KFQ L+  VH+LST  A+K F+  + TK+ +  S  
Sbjct:     1 MVNVLAFLPDELREKLIDEQETREKFQRLHSYVHALSTEVAMKRFYGALTTKEGISGSGV 60

Query:   156 -EGAEGGSNVTGLQNQSSDRSRLE 178
                ++ GS VT L +      ++E
Sbjct:    61 NATSDWGSYVTELSSLLEKSPKIE 84


>SGD|S000003828 [details] [associations]
            symbol:YAE1 "Protein that forms a complex with Lto1p and
            Rli1p" species:4932 "Saccharomyces cerevisiae" [GO:0005634
            "nucleus" evidence=IEA;IDA] [GO:0042273 "ribosomal large subunit
            biogenesis" evidence=IGI;IPI] [GO:0006413 "translational
            initiation" evidence=IGI;IPI] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
            SGD:S000003828 GO:GO:0005634 GO:GO:0005737 EMBL:BK006943
            EMBL:L47993 InterPro:IPR019191 Pfam:PF09811 eggNOG:NOG253004
            EMBL:Z49567 EMBL:AY557892 PIR:S57086 RefSeq:NP_012601.1
            ProteinModelPortal:P47118 DIP:DIP-5706N IntAct:P47118
            MINT:MINT-566734 STRING:P47118 PaxDb:P47118 EnsemblFungi:YJR067C
            GeneID:853530 KEGG:sce:YJR067C CYGD:YJR067c HOGENOM:HOG000066088
            OMA:HSKRGYL OrthoDB:EOG479JHC NextBio:974227 Genevestigator:P47118
            GermOnline:YJR067C Uniprot:P47118
        Length = 141

 Score = 102 (41.0 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query:    41 DIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTS 100
             D+ET+   +  + R+     GY DG+++ KE   QEGFN GF      G   G++ G+  
Sbjct:    14 DVETERSPDLVKLRENHSKRGYLDGIVSSKEEKLQEGFNDGFPTGAKLGKQVGIIMGILL 73

Query:   101 AL 102
              L
Sbjct:    74 GL 75


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      213       190   0.00091  110 3  11 22  0.49    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.61u 0.13s 20.74t   Elapsed:  00:00:01
  Total cpu time:  20.61u 0.13s 20.74t   Elapsed:  00:00:01
  Start:  Fri May 10 05:01:40 2013   End:  Fri May 10 05:01:41 2013

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