Query 028154
Match_columns 213
No_of_seqs 135 out of 209
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4774 Uncharacterized conser 100.0 1.6E-28 3.4E-33 207.3 13.2 169 29-198 14-188 (190)
2 KOG4595 Uncharacterized conser 99.5 9.7E-14 2.1E-18 113.9 8.0 124 49-201 12-135 (139)
3 PF09811 Yae1_N: Essential pro 99.3 8.4E-13 1.8E-17 86.8 3.8 39 61-99 1-39 (39)
4 PRK13386 fliH flagellar assemb 98.0 7.1E-05 1.5E-09 65.8 11.2 45 59-103 45-89 (236)
5 PRK05687 fliH flagellar assemb 97.9 0.00028 6.1E-09 61.5 12.0 47 47-97 58-104 (246)
6 PRK13386 fliH flagellar assemb 97.4 0.0021 4.6E-08 56.6 10.9 29 175-203 145-174 (236)
7 KOG4595 Uncharacterized conser 97.1 0.00071 1.5E-08 56.2 4.2 53 48-101 8-60 (139)
8 PRK05687 fliH flagellar assemb 97.0 0.0036 7.8E-08 54.6 8.5 8 192-199 176-183 (246)
9 COG1317 FliH Flagellar biosynt 96.5 0.019 4.1E-07 50.8 9.0 39 56-94 54-92 (234)
10 PF09811 Yae1_N: Essential pro 96.0 0.012 2.6E-07 38.6 3.9 34 60-93 4-37 (39)
11 TIGR03825 FliH_bacil flagellar 94.0 0.82 1.8E-05 40.4 11.0 26 177-202 161-186 (255)
12 COG1317 FliH Flagellar biosynt 93.1 1.7 3.6E-05 38.5 11.2 40 50-89 52-91 (234)
13 PRK06669 fliH flagellar assemb 90.9 4 8.6E-05 36.4 11.2 24 173-196 216-239 (281)
14 KOG4774 Uncharacterized conser 88.7 1.2 2.6E-05 38.8 5.8 81 19-103 11-91 (190)
15 PRK06669 fliH flagellar assemb 84.5 21 0.00046 31.8 11.7 29 175-203 189-217 (281)
16 TIGR03825 FliH_bacil flagellar 80.1 36 0.00077 30.1 11.4 26 171-196 184-209 (255)
17 PRK06032 fliH flagellar assemb 72.8 59 0.0013 27.7 11.1 25 177-201 113-137 (199)
18 PRK06328 type III secretion sy 66.3 60 0.0013 28.5 9.3 17 173-189 142-158 (223)
19 PRK09956 hypothetical protein; 64.8 9.8 0.00021 34.8 4.3 25 53-77 246-270 (308)
20 TIGR02499 HrpE_YscL_not type I 54.3 1.1E+02 0.0024 24.4 9.2 26 175-200 97-122 (166)
21 PRK06937 type III secretion sy 53.9 90 0.002 26.5 8.1 20 179-198 118-137 (204)
22 PF06295 DUF1043: Protein of u 49.7 1.1E+02 0.0024 24.6 7.6 50 88-137 4-56 (128)
23 PRK06328 type III secretion sy 45.4 2E+02 0.0042 25.3 9.0 29 175-203 115-143 (223)
24 PF12644 DUF3782: Protein of u 41.1 51 0.0011 22.8 3.9 37 46-88 25-61 (64)
25 PF05377 FlaC_arch: Flagella a 38.1 96 0.0021 22.2 4.9 45 88-132 5-49 (55)
26 PF12732 YtxH: YtxH-like prote 33.8 1.6E+02 0.0034 21.2 5.6 18 84-101 3-20 (74)
27 PF05659 RPW8: Arabidopsis bro 31.4 3E+02 0.0065 22.7 7.9 23 173-195 67-89 (147)
28 TIGR02301 conserved hypothetic 30.3 39 0.00084 27.8 2.1 35 48-85 54-88 (121)
29 PRK06937 type III secretion sy 29.0 64 0.0014 27.5 3.3 12 173-184 141-152 (204)
30 PF09539 DUF2385: Protein of u 26.3 54 0.0012 25.9 2.2 33 50-85 31-63 (96)
31 PF10247 Romo1: Reactive mitoc 22.9 82 0.0018 23.3 2.5 28 78-105 7-34 (67)
32 PF04210 MtrG: Tetrahydrometha 22.7 95 0.0021 23.4 2.8 48 47-103 11-58 (70)
33 COG4980 GvpP Gas vesicle prote 22.7 2.8E+02 0.0061 22.5 5.7 27 85-111 6-32 (115)
34 PRK09098 type III secretion sy 22.4 5.5E+02 0.012 22.7 9.6 15 173-187 161-175 (233)
35 PRK09956 hypothetical protein; 22.3 89 0.0019 28.6 3.1 40 62-101 239-278 (308)
36 PRK11677 hypothetical protein; 22.2 4.5E+02 0.0098 21.7 8.0 16 117-132 39-54 (134)
37 TIGR01149 mtrG N5-methyltetrah 20.5 1.2E+02 0.0026 22.8 2.9 48 47-103 11-58 (70)
No 1
>KOG4774 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=207.29 Aligned_cols=169 Identities=25% Similarity=0.239 Sum_probs=141.4
Q ss_pred CCCCCCCCCCccccchhhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcCch-
Q 028154 29 DGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPN- 107 (213)
Q Consensus 29 dDDvwgs~Dee~~~~~~~~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~~l~~- 107 (213)
+|+.| .+|++.+...+..+||++++++|.+.||||||.+||++.+|+|||+||++|+.+|+.+|.++|+++|++++++
T Consensus 14 ~d~~d-~SDeEsd~~~l~~~elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~d 92 (190)
T KOG4774|consen 14 GDKGD-VSDEESDESLLAQRELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFHD 92 (190)
T ss_pred Ccccc-ccCchhHHHHhhcHHHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34444 4555566556779999999999999999999999999999999999999999999999999999999998644
Q ss_pred hHH---hHhHHHHHHHHHHHHHHHHhhcCChHHHhhhhhhhhhhhhhhhcccCCC--CCCccccccccCcchhhhhhhHH
Q 028154 108 ELK---EMLIETQEKRNKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAE--GGSNVTGLQNQSSDRSRLENHFG 182 (213)
Q Consensus 108 ~lk---~~l~~~q~kr~~L~~L~~sI~~ls~~d~L~~f~~~i~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~ 182 (213)
+.. +.++..|+-+...+.|+.+|..+++...++-|++.|..+...+.+...+ +-+.-.+...+..-+-.+..+..
T Consensus 93 Ene~~~k~~IlkQe~~r~~e~l~khif~~n~~~h~~e~l~~It~k~~~~~~~~Ek~~~~s~d~~s~sgi~~s~~~~~~~~ 172 (190)
T KOG4774|consen 93 ENENINKINILKQEVGRCEEYLLKHIFSINPPSHVVELLDSITDKDLCHVVPAEKKIDESKDEKSHSGIDCSYVECCRTQ 172 (190)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhhhcccccccccCCccccccCCCCCcceeeehhhhhH
Confidence 555 7789999999999999999999999999999999999998777665544 33323444555555557889999
Q ss_pred HHHHHhhhCCCccccc
Q 028154 183 ELESIILETPAIQVHL 198 (213)
Q Consensus 183 ~l~slL~~sp~i~~~~ 198 (213)
++.++++.||.+-+..
T Consensus 173 e~~~~~~~spt~~~~~ 188 (190)
T KOG4774|consen 173 EHAHSENPSPTWILEQ 188 (190)
T ss_pred HHhhccCCCCceEeec
Confidence 9999999999987654
No 2
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=9.7e-14 Score=113.88 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=103.4
Q ss_pred HHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhhcCchhHHhHhHHHHHHHHHHHHHHH
Q 028154 49 EWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYE 128 (213)
Q Consensus 49 Ew~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~~l~~~lk~~l~~~q~kr~~L~~L~~ 128 (213)
+.-++++++.+.||+||+.+|.+++.-+||..|+.+||.+|..+|+|+|...+|.++-+.-+ ...+.+.++.|.+++.
T Consensus 12 ~Iv~lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~Gc~~l~~~~lhs~~--~~ks~~~lr~L~~~l~ 89 (139)
T KOG4595|consen 12 DIVLLEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILGCVVLWQQLLHSPK--TRKSLRQLRSLISLLP 89 (139)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCc--hhcCHHHHHHHHHHHh
Confidence 35578999999999999999999999999999999999999999999999999988722221 2345577889999999
Q ss_pred HhhcCChHHHhhhhhhhhhhhhhhhcccCCCCCCccccccccCcchhhhhhhHHHHHHHhhhCCCcccccchh
Q 028154 129 SVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEVQ 201 (213)
Q Consensus 129 sI~~ls~~d~L~~f~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~slL~~sp~i~~~~~~~ 201 (213)
+++.+|..++. .+.+-. ...++|.+.+++++|+..-|+.+++++.-
T Consensus 90 ~l~~~~~~~~~------------------------d~~~~~---~~nkir~~~~~~~~l~~~k~~~t~s~e~~ 135 (139)
T KOG4595|consen 90 MLNDPPALDET------------------------DVQLIR---SKNKIRRKLKGSKSLLGAKPAPTNSVEHK 135 (139)
T ss_pred ccCCCcccchH------------------------HHHHHH---HHHHHHHHHHHHHhcccCccCcccccccc
Confidence 99999888887 232222 56799999999999999999988876643
No 3
>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1. The exact function has not been determined.
Probab=99.34 E-value=8.4e-13 Score=86.85 Aligned_cols=39 Identities=46% Similarity=0.963 Sum_probs=37.9
Q ss_pred chHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHH
Q 028154 61 GYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVT 99 (213)
Q Consensus 61 GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~l 99 (213)
||+||+.+|+++++|+|||.||++|+.+|+++|+++|++
T Consensus 1 GY~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~~ 39 (39)
T PF09811_consen 1 GYREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGFA 39 (39)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999999999974
No 4
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.01 E-value=7.1e-05 Score=65.81 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=26.1
Q ss_pred hcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 028154 59 TIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 103 (213)
Q Consensus 59 k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~ 103 (213)
..||.+|+..|-++++++||..||.+|..-|+.-|.-.|...+..
T Consensus 45 ~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~g~~ 89 (236)
T PRK13386 45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQ 89 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555666666666666666666655555555433
No 5
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=97.85 E-value=0.00028 Score=61.48 Aligned_cols=47 Identities=32% Similarity=0.639 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 028154 47 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRG 97 (213)
Q Consensus 47 ~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G 97 (213)
..++..+++. ||.+|+..|.+.+.++||..||.+|+.-|+.-|.-.|
T Consensus 58 ~~~~e~~~~~----a~~eG~~~G~~~G~~~G~~~G~~~G~~~G~~qg~~e~ 104 (246)
T PRK05687 58 EEELEAIRQQ----AHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEG 104 (246)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555 4555555555555555555555555555555554433
No 6
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=97.38 E-value=0.0021 Score=56.56 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=16.0
Q ss_pred hhhhhhHHHHHHHhhh-CCCcccccchhhH
Q 028154 175 SRLENHFGELESIILE-TPAIQVHLEVQKY 203 (213)
Q Consensus 175 ~~l~~~~~~l~slL~~-sp~i~~~~~~~~~ 203 (213)
+.|-+.+++....|.. +..|.|+++..-|
T Consensus 145 ~~il~~v~eaL~~lp~~~~~v~I~vnP~D~ 174 (236)
T PRK13386 145 QQILALVEETLAALPDDPEQLKVHLNPEEF 174 (236)
T ss_pred HHHHHHHHHHHHhccccCCCeEEEECHHHH
Confidence 3455566666666654 3556666655443
No 7
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00071 Score=56.15 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 028154 48 REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSA 101 (213)
Q Consensus 48 rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsa 101 (213)
-+|..+-. ....=|++|+.+|-+.++.+||-+||..|...|+..|.+.|.+.+
T Consensus 8 d~fD~Iv~-lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~G 60 (139)
T KOG4595|consen 8 DDFDDIVL-LEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILG 60 (139)
T ss_pred hHHHHHHH-HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444433 334458888888888888888888888888888888888888888
No 8
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=97.02 E-value=0.0036 Score=54.56 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.1
Q ss_pred CCcccccc
Q 028154 192 PAIQVHLE 199 (213)
Q Consensus 192 p~i~~~~~ 199 (213)
.++.|+++
T Consensus 176 ~~v~i~v~ 183 (246)
T PRK05687 176 GKPQLRVN 183 (246)
T ss_pred CCceEEEC
Confidence 33444433
No 9
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.48 E-value=0.019 Score=50.76 Aligned_cols=39 Identities=26% Similarity=0.550 Sum_probs=31.1
Q ss_pred HhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHH
Q 028154 56 QFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGL 94 (213)
Q Consensus 56 ~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~ 94 (213)
.-+..+++++|..|.++++++||..||.+|+.-|..-|+
T Consensus 54 ~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~ 92 (234)
T COG1317 54 ESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR 92 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578888888888888888888888888888877776
No 10
>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1. The exact function has not been determined.
Probab=96.00 E-value=0.012 Score=38.58 Aligned_cols=34 Identities=32% Similarity=0.611 Sum_probs=19.3
Q ss_pred cchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHH
Q 028154 60 IGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWG 93 (213)
Q Consensus 60 ~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG 93 (213)
.|+.+|..+|-.+..+.||..||..|+.+|+..|
T Consensus 4 eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G 37 (39)
T PF09811_consen 4 EGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKG 37 (39)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555555555555555544
No 11
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=94.04 E-value=0.82 Score=40.37 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHhhhCCCcccccchhh
Q 028154 177 LENHFGELESIILETPAIQVHLEVQK 202 (213)
Q Consensus 177 l~~~~~~l~slL~~sp~i~~~~~~~~ 202 (213)
+.+.+++....+..++.|.|+++..-
T Consensus 161 i~~lv~~al~~l~~~~~i~I~v~p~d 186 (255)
T TIGR03825 161 FQALVRQVLSEVREFDEVSIYVHPHW 186 (255)
T ss_pred HHHHHHHHHHhccCCCcEEEEECHHH
Confidence 44455555555555555555555544
No 12
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.08 E-value=1.7 Score=38.54 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=24.9
Q ss_pred HHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHH
Q 028154 50 WQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSG 89 (213)
Q Consensus 50 w~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG 89 (213)
+..-..+=..++|..|-.+|.+.++|.||.+||.+|..-|
T Consensus 52 ~~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~ 91 (234)
T COG1317 52 ELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEG 91 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666666666666666666666665555
No 13
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=90.92 E-value=4 Score=36.39 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=12.0
Q ss_pred chhhhhhhHHHHHHHhhhCCCccc
Q 028154 173 DRSRLENHFGELESIILETPAIQV 196 (213)
Q Consensus 173 ~~~~l~~~~~~l~slL~~sp~i~~ 196 (213)
+...++....++.+++...+.+.|
T Consensus 216 d~~~l~~~~~~l~~~l~~~~~i~I 239 (281)
T PRK06669 216 DYEYVKEQKDELISLLDNEEHLKI 239 (281)
T ss_pred HHHHHHHhHHHHHHhcCCCCCeEE
Confidence 444555555555555554444443
No 14
>KOG4774 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=1.2 Score=38.76 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccchhhHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHH
Q 028154 19 CDGGDLLDGDDGSVWGGSNEEFDIETDLDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGV 98 (213)
Q Consensus 19 ~~~~D~~~~ddDDvwgs~Dee~~~~~~~~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~ 98 (213)
+|.+|+.+.+|.. +|.....++...+--++.-..=-..|-.-|-++--.+++-.||-.|-+.|.++|.-.|.+.+.
T Consensus 11 nn~~d~~d~SDeE----sd~~~l~~~elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsal 86 (190)
T KOG4774|consen 11 NNPGDKGDVSDEE----SDESLLAQRELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSAL 86 (190)
T ss_pred cCCCccccccCch----hHHHHhhcHHHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5667776666544 444554444555555555556677888888888888888999999999999999999999998
Q ss_pred HHHhh
Q 028154 99 TSALV 103 (213)
Q Consensus 99 lsal~ 103 (213)
++-+-
T Consensus 87 l~~f~ 91 (190)
T KOG4774|consen 87 LSWFH 91 (190)
T ss_pred HHHcc
Confidence 88765
No 15
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=84.51 E-value=21 Score=31.78 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=21.7
Q ss_pred hhhhhhHHHHHHHhhhCCCcccccchhhH
Q 028154 175 SRLENHFGELESIILETPAIQVHLEVQKY 203 (213)
Q Consensus 175 ~~l~~~~~~l~slL~~sp~i~~~~~~~~~ 203 (213)
.-+....+++...|...+.+.++++..-|
T Consensus 189 ~~i~~li~~al~~l~~~~~i~I~V~p~d~ 217 (281)
T PRK06669 189 EIALALVKELLKEVKDATDITIRVNPEDY 217 (281)
T ss_pred HHHHHHHHHHHHHcCcCCcEEEEECHHHH
Confidence 34667778888888888888888866555
No 16
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=80.08 E-value=36 Score=30.06 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=18.0
Q ss_pred CcchhhhhhhHHHHHHHhhhCCCccc
Q 028154 171 SSDRSRLENHFGELESIILETPAIQV 196 (213)
Q Consensus 171 ~~~~~~l~~~~~~l~slL~~sp~i~~ 196 (213)
+.+...++.....|.+.+.....+.|
T Consensus 184 p~d~~~v~~~~~~l~~~~~~~~~i~i 209 (255)
T TIGR03825 184 PHWYERVAAQKDELQSILPACEHLAV 209 (255)
T ss_pred HHHHHHHHHhHHHHHhhcCCCCceEE
Confidence 34677888888888888765555544
No 17
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=72.85 E-value=59 Score=27.72 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHhhhCCCcccccchh
Q 028154 177 LENHFGELESIILETPAIQVHLEVQ 201 (213)
Q Consensus 177 l~~~~~~l~slL~~sp~i~~~~~~~ 201 (213)
+.+.+++....+...|.+.|+++..
T Consensus 113 v~~~v~eal~~l~~~~~v~I~v~P~ 137 (199)
T PRK06032 113 ITAAVRDCLRHLVATPHLVVRVNDA 137 (199)
T ss_pred HHHHHHHHHHHhcCCCcEEEEECHH
Confidence 4555555555555555555555544
No 18
>PRK06328 type III secretion system protein; Validated
Probab=66.29 E-value=60 Score=28.48 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=7.8
Q ss_pred chhhhhhhHHHHHHHhh
Q 028154 173 DRSRLENHFGELESIIL 189 (213)
Q Consensus 173 ~~~~l~~~~~~l~slL~ 189 (213)
+...|+....++..++.
T Consensus 142 D~~~v~~~~~~l~~~~~ 158 (223)
T PRK06328 142 DLAIVEKSRPELKKIVE 158 (223)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44445544444444433
No 19
>PRK09956 hypothetical protein; Provisional
Probab=64.76 E-value=9.8 Score=34.85 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=14.1
Q ss_pred HHHHhhhcchHHHHHhhhhhhhhhh
Q 028154 53 RRDQFHTIGYRDGLLAGKETSAQEG 77 (213)
Q Consensus 53 l~~~~~k~GYrDGi~~GKE~~lQeG 77 (213)
+.++....|...|+..|++.++|+|
T Consensus 246 iAe~l~qeG~e~G~q~G~~eG~qeG 270 (308)
T PRK09956 246 IAERLRQEGHQIGWQEGKLEGLQEG 270 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666664444444
No 20
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=54.27 E-value=1.1e+02 Score=24.37 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHhhhCCCcccccch
Q 028154 175 SRLENHFGELESIILETPAIQVHLEV 200 (213)
Q Consensus 175 ~~l~~~~~~l~slL~~sp~i~~~~~~ 200 (213)
..+.+.++++...+...+.+.|+++.
T Consensus 97 e~l~~lv~~al~~~~~~~~v~I~v~P 122 (166)
T TIGR02499 97 ERLVRLLRQLLRAVANQGRLTLRVHP 122 (166)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEECH
Confidence 34555555555555555555555443
No 21
>PRK06937 type III secretion system protein; Reviewed
Probab=53.91 E-value=90 Score=26.54 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=8.0
Q ss_pred hhHHHHHHHhhhCCCccccc
Q 028154 179 NHFGELESIILETPAIQVHL 198 (213)
Q Consensus 179 ~~~~~l~slL~~sp~i~~~~ 198 (213)
+.+++....+..++.+.|++
T Consensus 118 ~lv~~al~~l~~~~~v~I~V 137 (204)
T PRK06937 118 QVVREALALVSNQKQVVVRV 137 (204)
T ss_pred HHHHHHHHhcccCCeEEEEE
Confidence 33333333344444444433
No 22
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.72 E-value=1.1e+02 Score=24.56 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhcCchhH-HhHh-HHHHHHHHHHHHHHHHhhc-CChHH
Q 028154 88 SGYNWGLVRGVTSALVCLPNEL-KEML-IETQEKRNKFQSLYESVHS-LSTTD 137 (213)
Q Consensus 88 lG~~iG~l~G~lsal~~l~~~l-k~~l-~~~q~kr~~L~~L~~sI~~-ls~~d 137 (213)
+|+-+|.+.|++.+....+..- +..+ ....+.+.+|......|.+ |..+.
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta 56 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEVNDHFAQTA 56 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554443322211 1112 2233566777777777776 44433
No 23
>PRK06328 type III secretion system protein; Validated
Probab=45.37 E-value=2e+02 Score=25.26 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=18.7
Q ss_pred hhhhhhHHHHHHHhhhCCCcccccchhhH
Q 028154 175 SRLENHFGELESIILETPAIQVHLEVQKY 203 (213)
Q Consensus 175 ~~l~~~~~~l~slL~~sp~i~~~~~~~~~ 203 (213)
..+-+.+++-...|.....+.|+++..-|
T Consensus 115 e~il~lV~~aL~~l~~~~~v~I~VnP~D~ 143 (223)
T PRK06328 115 ETIVSIIANSLKELTQHKRIIIHVNPKDL 143 (223)
T ss_pred HHHHHHHHHHHHhcccCCceEEEECHHHH
Confidence 44556666666666667777777766554
No 24
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=41.10 E-value=51 Score=22.80 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHH
Q 028154 46 LDREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHS 88 (213)
Q Consensus 46 ~~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~l 88 (213)
...+++++.+.+...|++-|+.. +..|-+||+.|+.+
T Consensus 25 t~e~~~~l~~~~~al~~~~~~~~------e~afr~G~~d~l~~ 61 (64)
T PF12644_consen 25 TKEDKKRLEEYIDALGARWGLES------EEAFRQGFRDGLRL 61 (64)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHH
Confidence 45677778888888888888764 56666666666653
No 25
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.08 E-value=96 Score=22.23 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHhHhHHHHHHHHHHHHHHHHhhc
Q 028154 88 SGYNWGLVRGVTSALVCLPNELKEMLIETQEKRNKFQSLYESVHS 132 (213)
Q Consensus 88 lG~~iG~l~G~lsal~~l~~~lk~~l~~~q~kr~~L~~L~~sI~~ 132 (213)
+=-++|.+.+.+.++..=..++++.+....+..++|-+||+.|..
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 335678888888888876677888887777888899999998764
No 26
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=33.76 E-value=1.6e+02 Score=21.16 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028154 84 ESFHSGYNWGLVRGVTSA 101 (213)
Q Consensus 84 ~Ga~lG~~iG~l~G~lsa 101 (213)
.|+-+|.-+|-..|++.+
T Consensus 3 ~g~l~Ga~~Ga~~glL~a 20 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFA 20 (74)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344444444444444443
No 27
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=31.35 E-value=3e+02 Score=22.73 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=16.2
Q ss_pred chhhhhhhHHHHHHHhhhCCCcc
Q 028154 173 DRSRLENHFGELESIILETPAIQ 195 (213)
Q Consensus 173 ~~~~l~~~~~~l~slL~~sp~i~ 195 (213)
...+|....++=..|.+.|+.+.
T Consensus 67 e~e~L~~~L~~g~~LV~k~sk~~ 89 (147)
T PF05659_consen 67 EIERLKELLEKGKELVEKCSKVR 89 (147)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 45677777777777777777755
No 28
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=30.31 E-value=39 Score=27.77 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHH
Q 028154 48 REWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKES 85 (213)
Q Consensus 48 rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~G 85 (213)
..|+..+..+... |+.+.....-+-++||.||+.-
T Consensus 54 ~~WR~~M~~Ll~a---E~p~~~rR~rl~~aFNrGYr~~ 88 (121)
T TIGR02301 54 DYWRSRMQALIDA---ETADEERRARMTAAFNRGYRSF 88 (121)
T ss_pred hHHHHHHHHHHHh---hCCChhHHHHHHHHHHHHHHHH
Confidence 5677777777664 3444566778889999999753
No 29
>PRK06937 type III secretion system protein; Reviewed
Probab=29.01 E-value=64 Score=27.46 Aligned_cols=12 Identities=0% Similarity=0.268 Sum_probs=6.0
Q ss_pred chhhhhhhHHHH
Q 028154 173 DRSRLENHFGEL 184 (213)
Q Consensus 173 ~~~~l~~~~~~l 184 (213)
+...++....++
T Consensus 141 D~~~v~~~~~~~ 152 (204)
T PRK06937 141 QAAAVREQIAKV 152 (204)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 30
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=26.31 E-value=54 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHH
Q 028154 50 WQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKES 85 (213)
Q Consensus 50 w~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~G 85 (213)
|+..+..+... |.........|-+.||.||+.-
T Consensus 31 WR~~M~~Ll~~---E~p~~~rR~rl~~aFN~GYr~~ 63 (96)
T PF09539_consen 31 WRDRMQALLDA---EAPDEARRARLIAAFNRGYRAF 63 (96)
T ss_pred HHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHH
Confidence 44444444432 3333456677888999999753
No 31
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=22.86 E-value=82 Score=23.32 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.2
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHhhcC
Q 028154 78 FNMGFKESFHSGYNWGLVRGVTSALVCL 105 (213)
Q Consensus 78 FD~Gf~~Ga~lG~~iG~l~G~lsal~~l 105 (213)
+-.|+.-|+.+|..+|.+.|..++++.-
T Consensus 7 ikmG~~MG~~VG~~~G~l~G~~~~~r~g 34 (67)
T PF10247_consen 7 IKMGFMMGGAVGGAFGALFGTFSAFRYG 34 (67)
T ss_pred HHHHHHHhhHHHhhhhhhhhhHHHhccC
Confidence 3467788889999999999999998873
No 32
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=22.73 E-value=95 Score=23.37 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 028154 47 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 103 (213)
Q Consensus 47 ~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~ 103 (213)
+.|+++++++. |.|++--|-..-+=|. +.|=++|..+|-++|++.++.
T Consensus 11 ~~~~~~i~~rL------d~iEeKvEf~~~Ei~Q---r~GkkiGRDiGIlYG~v~Gli 58 (70)
T PF04210_consen 11 PDDFNEIMKRL------DEIEEKVEFTNAEIAQ---RAGKKIGRDIGILYGLVIGLI 58 (70)
T ss_pred HHHHHHHHHHH------HHHHHHHHhHHHHHHH---HHhHHhhhHHHHHHHHHHHHH
Confidence 56777777764 3444433332222111 346667777777777666654
No 33
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=22.68 E-value=2.8e+02 Score=22.54 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhHHh
Q 028154 85 SFHSGYNWGLVRGVTSALVCLPNELKE 111 (213)
Q Consensus 85 Ga~lG~~iG~l~G~lsal~~l~~~lk~ 111 (213)
.+-+|.-+|-+.|.+.+|..-|..=|+
T Consensus 6 ~~l~G~liGgiiGa~aaLL~AP~sGke 32 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFAPKSGKE 32 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 466788888888888888887765444
No 34
>PRK09098 type III secretion system protein HrpB; Validated
Probab=22.37 E-value=5.5e+02 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=8.9
Q ss_pred chhhhhhhHHHHHHH
Q 028154 173 DRSRLENHFGELESI 187 (213)
Q Consensus 173 ~~~~l~~~~~~l~sl 187 (213)
+...++..+..+...
T Consensus 161 D~~~v~~~~~~~~~~ 175 (233)
T PRK09098 161 DLDAARAAFGAAAAA 175 (233)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556666666655544
No 35
>PRK09956 hypothetical protein; Provisional
Probab=22.30 E-value=89 Score=28.63 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=22.7
Q ss_pred hHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 028154 62 YRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSA 101 (213)
Q Consensus 62 YrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsa 101 (213)
+++-+----+.-.|+|+-.|-.+|-.-|.+-|...|.+..
T Consensus 239 ~~e~iMTiAe~l~qeG~e~G~q~G~~eG~qeG~~e~~~ei 278 (308)
T PRK09956 239 QKERLMTIAERLRQEGHQIGWQEGKLEGLQEGMHEQAIKI 278 (308)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554455556666666666665555555555555444
No 36
>PRK11677 hypothetical protein; Provisional
Probab=22.23 E-value=4.5e+02 Score=21.70 Aligned_cols=16 Identities=6% Similarity=0.279 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 028154 117 QEKRNKFQSLYESVHS 132 (213)
Q Consensus 117 q~kr~~L~~L~~sI~~ 132 (213)
.+.+.+|+.....|.+
T Consensus 39 e~~k~ele~YkqeV~~ 54 (134)
T PRK11677 39 EKNKAELEEYRQELVS 54 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666666554
No 37
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=20.52 E-value=1.2e+02 Score=22.82 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhcchHHHHHhhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 028154 47 DREWQRRRDQFHTIGYRDGLLAGKETSAQEGFNMGFKESFHSGYNWGLVRGVTSALV 103 (213)
Q Consensus 47 ~rEw~rl~~~~~k~GYrDGi~~GKE~~lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~ 103 (213)
+.|+++++++. |.|++--|-..-+=|. +.|=++|..+|-++|++-++.
T Consensus 11 ~~d~~~i~~rL------d~iEeKVEf~~~E~~Q---r~Gkk~GRDiGIlYG~viGll 58 (70)
T TIGR01149 11 PDEFNEVMKRL------DEIEEKVEFVNGEVAQ---RIGKKVGRDIGILYGLVIGLI 58 (70)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHH---HHhHHhhhHHHHHHHHHHHHH
Confidence 57788888774 5555555544333332 346666666666666666553
Done!