Query 028154
Match_columns 213
No_of_seqs 135 out of 209
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_M SurviVal motor neuron p 12.8 50 0.0017 21.0 0.3 11 26-36 2-12 (37)
2 3axj_A GM27569P, translin; tra 12.2 1.8E+02 0.006 24.8 3.7 18 195-212 147-164 (249)
3 2cqn_A Formin-binding protein 9.3 3.2E+02 0.011 19.2 3.7 27 173-199 4-31 (77)
4 3t5v_C 26S proteasome complex 9.1 1.7E+02 0.006 21.8 2.2 26 30-55 61-86 (89)
5 3v22_V Ribosome modulation fac 8.6 1.4E+02 0.0047 20.9 1.4 17 70-86 5-21 (61)
6 1q08_A Zn(II)-responsive regul 8.5 2.6E+02 0.009 19.2 2.9 16 87-102 14-29 (99)
7 1vp7_A Exodeoxyribonuclease VI 8.2 4.4E+02 0.015 19.7 4.2 34 118-151 34-69 (100)
8 2hjm_A Hypothetical protein PF 8.1 7E+02 0.024 18.9 6.0 31 74-104 35-65 (103)
9 1sgv_A TRNA pseudouridine synt 8.0 78 0.0027 28.3 -0.2 21 193-213 168-188 (316)
10 2nr5_A Hypothetical protein SO 7.6 2.7E+02 0.0091 19.3 2.5 35 150-188 26-60 (67)
No 1
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=12.79 E-value=50 Score=21.04 Aligned_cols=11 Identities=27% Similarity=0.927 Sum_probs=7.3
Q ss_pred CCCCCCCCCCC
Q 028154 26 DGDDGSVWGGS 36 (213)
Q Consensus 26 ~~ddDDvwgs~ 36 (213)
+.+|.|+|++.
T Consensus 2 qsddSDiWDdt 12 (37)
T 3s6n_M 2 QSDDSDIWDDT 12 (37)
T ss_pred CccchhhhhhH
Confidence 35678899653
No 2
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=12.16 E-value=1.8e+02 Score=24.79 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=13.4
Q ss_pred ccccchhhHHHHhhhhcC
Q 028154 195 QVHLEVQKYLVSLCNDIG 212 (213)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~ 212 (213)
.+|++.+-||..||.=+|
T Consensus 147 ~f~v~~edYLlGL~DLtG 164 (249)
T 3axj_A 147 GFHLDVEDYLLGILQLAS 164 (249)
T ss_dssp SSBCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHh
Confidence 467888888888876544
No 3
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=9.27 E-value=3.2e+02 Score=19.16 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=21.0
Q ss_pred chhhhhhhHHHHHHHhhhC-CCcccccc
Q 028154 173 DRSRLENHFGELESIILET-PAIQVHLE 199 (213)
Q Consensus 173 ~~~~l~~~~~~l~slL~~s-p~i~~~~~ 199 (213)
...+++....++..||... |.|+..-.
T Consensus 4 ~~~r~rrl~~~F~~mLk~~~p~I~~~s~ 31 (77)
T 2cqn_A 4 GSSGMKRKESAFKSMLKQAAPPIELDAV 31 (77)
T ss_dssp CCCSHHHHHHHHHHHHHTCSSCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4567888888899999999 88886543
No 4
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=9.07 E-value=1.7e+02 Score=21.81 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=14.2
Q ss_pred CCCCCCCCCccccchhhHHHHHHHHH
Q 028154 30 GSVWGGSNEEFDIETDLDREWQRRRD 55 (213)
Q Consensus 30 DDvwgs~Dee~~~~~~~~rEw~rl~~ 55 (213)
.|-|++++.+.+.+.-+..|+.+...
T Consensus 61 EddWDDDdv~DDFS~QLr~EL~k~~~ 86 (89)
T 3t5v_C 61 EENWDDVEVDDDFTNELKAELDRYKR 86 (89)
T ss_dssp CTTTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHhHh
Confidence 44466655555665555555555544
No 5
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=8.58 E-value=1.4e+02 Score=20.88 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=10.8
Q ss_pred hhhhhhhhhhhcHHHHH
Q 028154 70 KETSAQEGFNMGFKESF 86 (213)
Q Consensus 70 KE~~lQeGFD~Gf~~Ga 86 (213)
|...++..|..||.-|+
T Consensus 5 KRD~leRA~~rGYqAGl 21 (61)
T 3v22_V 5 KRDRLERAHQRGYQAGI 21 (61)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHhhc
Confidence 44556677777776654
No 6
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=8.47 E-value=2.6e+02 Score=19.25 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 028154 87 HSGYNWGLVRGVTSAL 102 (213)
Q Consensus 87 ~lG~~iG~l~G~lsal 102 (213)
.+||.+..|+-++...
T Consensus 14 ~lGfsL~eIk~~l~~~ 29 (99)
T 1q08_A 14 QLGFSLESIRELLSIR 29 (99)
T ss_dssp HTTCCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHH
Confidence 3566677777777543
No 7
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=8.16 E-value=4.4e+02 Score=19.75 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhc--CChHHHhhhhhhhhhhhhh
Q 028154 118 EKRNKFQSLYESVHS--LSTTDALKLFHDDILTKKA 151 (213)
Q Consensus 118 ~kr~~L~~L~~sI~~--ls~~d~L~~f~~~i~~~~~ 151 (213)
+.++.|+.+...+.+ +|.++++++|.+-+.....
T Consensus 34 eal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~ 69 (100)
T 1vp7_A 34 TALAELESLVSAMENGTLPLEQSLSAYRRGVELARV 69 (100)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 456777777777765 9999999999988877664
No 8
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=8.10 E-value=7e+02 Score=18.89 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=16.6
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 028154 74 AQEGFNMGFKESFHSGYNWGLVRGVTSALVC 104 (213)
Q Consensus 74 lQeGFD~Gf~~Ga~lG~~iG~l~G~lsal~~ 104 (213)
+++|+..--.+-|.--.-+|++-|++.++..
T Consensus 35 Ln~glEskrGe~Fv~vsIlGFlEGiLttLK~ 65 (103)
T 2hjm_A 35 LTHGIEKTRGEAFAKASIYGFLEGILTTLKM 65 (103)
T ss_dssp TTSHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhHhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433222333334456778888877655
No 9
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=7.97 E-value=78 Score=28.35 Aligned_cols=21 Identities=19% Similarity=0.539 Sum_probs=17.7
Q ss_pred CcccccchhhHHHHhhhhcCC
Q 028154 193 AIQVHLEVQKYLVSLCNDIGK 213 (213)
Q Consensus 193 ~i~~~~~~~~~~~~~~~~~~~ 213 (213)
.|+|+.+..-|+-|||.|||.
T Consensus 168 ~~~v~CskGTYIRsLa~DiG~ 188 (316)
T 1sgv_A 168 DVEIDCSSGTYIRALARDLGD 188 (316)
T ss_dssp EEEEEESCCTTHHHHHHHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHH
Confidence 355888889999999999983
No 10
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=7.62 E-value=2.7e+02 Score=19.31 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=20.7
Q ss_pred hhhhcccCCCCCCccccccccCcchhhhhhhHHHHHHHh
Q 028154 150 KAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESII 188 (213)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~slL 188 (213)
.+..|.-++++||+..++|+ ..-..+..|+|.--|
T Consensus 26 kairqlcgaedssdssdmqe----veiwtnrikeledwl 60 (67)
T 2nr5_A 26 KAIRQLCGAEDSSDSSDMQE----VEIWTNRIKELEDWL 60 (67)
T ss_dssp HHHHHTTTTTCC----HHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccCCcchhhHH----HHHHHHHHHHHHHHh
Confidence 34456667778888777776 455677788887655
Done!