Query 028154
Match_columns 213
No_of_seqs 135 out of 209
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 11:19:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028154.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028154hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j1ja_ a.118.16.1 (A:) Transl 12.7 28 0.002 26.7 0.8 31 105-135 6-36 (217)
2 d1q08a_ a.6.1.3 (A:) Transcrip 11.4 1E+02 0.0075 20.3 3.5 47 85-131 12-66 (94)
3 d1ryla_ d.276.1.1 (A:) Hypothe 11.1 49 0.0036 24.6 1.8 15 8-22 43-57 (164)
4 d1t5ja_ a.209.1.1 (A:) Hypothe 10.3 1.1E+02 0.0079 23.2 3.7 29 88-116 257-285 (301)
5 d1vp7a_ a.7.13.1 (A:) Exonucle 8.8 1.8E+02 0.013 18.5 3.8 33 119-151 11-45 (68)
6 d2nr5a1 a.25.6.1 (A:1-64) Hypo 8.3 1.1E+02 0.0082 19.4 2.5 35 150-188 23-57 (64)
7 d2v0fa1 d.76.2.1 (A:2629-2715) 7.4 87 0.0064 21.5 1.7 18 180-197 37-54 (87)
8 d1j2oa1 g.39.1.3 (A:1-30) Rhom 7.1 39 0.0029 19.2 -0.3 8 1-8 14-21 (30)
9 d1sdia_ a.198.1.1 (A:) Hypothe 7.0 2.3E+02 0.017 21.8 4.4 59 121-207 34-92 (213)
10 d2ckaa1 d.76.2.1 (A:2028-2085) 6.9 1.1E+02 0.0083 19.3 2.0 18 180-197 27-44 (58)
No 1
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.74 E-value=28 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=21.6
Q ss_pred CchhHHhHhHHHHHHHHHHHHHHHHhhcCCh
Q 028154 105 LPNELKEMLIETQEKRNKFQSLYESVHSLST 135 (213)
Q Consensus 105 l~~~lk~~l~~~q~kr~~L~~L~~sI~~ls~ 135 (213)
++.+++..+.....+|..+..+-.-|...|.
T Consensus 6 ~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk 36 (217)
T d1j1ja_ 6 IFVELQGFLAAEQDIREEIRKVVQSLEQTAR 36 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455677777777788888777777666555
No 2
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=11.35 E-value=1e+02 Score=20.34 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc---Cch-h----HHhHhHHHHHHHHHHHHHHHHhh
Q 028154 85 SFHSGYNWGLVRGVTSALVC---LPN-E----LKEMLIETQEKRNKFQSLYESVH 131 (213)
Q Consensus 85 Ga~lG~~iG~l~G~lsal~~---l~~-~----lk~~l~~~q~kr~~L~~L~~sI~ 131 (213)
+=.+||.+..|+-++..+.. .+- + +.+++....++++.|+.+...++
T Consensus 12 ar~lGFsL~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~ 66 (94)
T d1q08a_ 12 ARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQ 66 (94)
T ss_dssp HHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888888877642 221 1 22334444556666666666544
No 3
>d1ryla_ d.276.1.1 (A:) Hypothetical protein yfbM {Escherichia coli [TaxId: 562]}
Probab=11.11 E-value=49 Score=24.60 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=12.6
Q ss_pred hhhhhhhhhccCCCC
Q 028154 8 ARHALHCLVSGCDGG 22 (213)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (213)
+-||||||..|.+..
T Consensus 43 ~Wd~LhflLtg~~~~ 57 (164)
T d1ryla_ 43 RWDFLHFGLTGTSAF 57 (164)
T ss_dssp CHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHcCCccc
Confidence 569999999998754
No 4
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.27 E-value=1.1e+02 Score=23.23 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHhHhHHH
Q 028154 88 SGYNWGLVRGVTSALVCLPNELKEMLIET 116 (213)
Q Consensus 88 lG~~iG~l~G~lsal~~l~~~lk~~l~~~ 116 (213)
.|.-+|-+.|...+...+|.+.++.+...
T Consensus 257 ~aai~Gal~GA~~G~~~IP~~w~~~l~~~ 285 (301)
T d1t5ja_ 257 LASMYGAMAGAYYGFKNIPKEWIDGLKNK 285 (301)
T ss_dssp HHHHHHHHHHHHHCGGGSCHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhChhcCCHHHHHHhcCH
Confidence 66777888888888889999988876443
No 5
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=8.76 E-value=1.8e+02 Score=18.49 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhc--CChHHHhhhhhhhhhhhhh
Q 028154 119 KRNKFQSLYESVHS--LSTTDALKLFHDDILTKKA 151 (213)
Q Consensus 119 kr~~L~~L~~sI~~--ls~~d~L~~f~~~i~~~~~ 151 (213)
.++.|+.+...+.+ +|.++++.+|.+-+.....
T Consensus 11 ~l~~LE~IV~~LE~g~l~Leesl~~ye~G~~L~~~ 45 (68)
T d1vp7a_ 11 ALAELESLVSAMENGTLPLEQSLSAYRRGVELARV 45 (68)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 35677777777766 9999999999998877664
No 6
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=8.26 E-value=1.1e+02 Score=19.37 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=20.8
Q ss_pred hhhhcccCCCCCCccccccccCcchhhhhhhHHHHHHHh
Q 028154 150 KAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESII 188 (213)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~slL 188 (213)
.+..|.-++++||+..++|+ ..-..+..|+|.--|
T Consensus 23 kairqlcgaedssdssdmqe----veiwtnrikeledwl 57 (64)
T d2nr5a1 23 KAIRQLCGAEDSSDSSDMQE----VEIWTNRIKELEDWL 57 (64)
T ss_dssp HHHHHTTTTTCC----HHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccCCcchhhHH----HHHHHHHHHHHHHHh
Confidence 34456667778888777776 455677788887655
No 7
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.42 E-value=87 Score=21.51 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.8
Q ss_pred hHHHHHHHhhhCCCcccc
Q 028154 180 HFGELESIILETPAIQVH 197 (213)
Q Consensus 180 ~~~~l~slL~~sp~i~~~ 197 (213)
..++|+.-|...|.|.|.
T Consensus 37 ~~~~L~~WL~~nP~y~V~ 54 (87)
T d2v0fa1 37 PMKDLPRWLEENPEFAVA 54 (87)
T ss_dssp BGGGHHHHHHHCTTEEEC
T ss_pred cHHHHHHHHHHCCCceeC
Confidence 468999999999999984
No 8
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.07 E-value=39 Score=19.18 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=5.9
Q ss_pred Cchhhhch
Q 028154 1 MDKFLLNA 8 (213)
Q Consensus 1 ~~~~~~~~ 8 (213)
.|+|||+|
T Consensus 14 ~DRflL~a 21 (30)
T d1j2oa1 14 GDRYFLKA 21 (30)
T ss_dssp CSSEEEEC
T ss_pred hHHHHHHH
Confidence 47888876
No 9
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=7.05 E-value=2.3e+02 Score=21.80 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCChHHHhhhhhhhhhhhhhhhcccCCCCCCccccccccCcchhhhhhhHHHHHHHhhhCCCcccccch
Q 028154 121 NKFQSLYESVHSLSTTDALKLFHDDILTKKAVEQSEGAEGGSNVTGLQNQSSDRSRLENHFGELESIILETPAIQVHLEV 200 (213)
Q Consensus 121 ~~L~~L~~sI~~ls~~d~L~~f~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~slL~~sp~i~~~~~~ 200 (213)
+.|+.++.||-.+.++++..+|-+. ...|+.=++.|...|...+.-....+.
T Consensus 34 ~~~e~~i~Si~~~~~~s~~~vyg~~----------------------------~~nL~~Gl~~L~~~L~~~~~~~~~~e~ 85 (213)
T d1sdia_ 34 DALHVSLNSIIDMNPSSTLAVFGGS----------------------------EANLRVGLETLLGVLNASSRQGLNAEL 85 (213)
T ss_dssp HHHHHHHHHHHCCSCSSHHHHTTSC----------------------------GGGGHHHHHHHHHHHHCCCSSSHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHCCc----------------------------HHHHHHHHHHHHHHhcCCCcccccHHH
Confidence 4688888888888888888666332 233555555566666554433334444
Q ss_pred hhHHHHh
Q 028154 201 QKYLVSL 207 (213)
Q Consensus 201 ~~~~~~~ 207 (213)
.+|.+++
T Consensus 86 ~RY~~sl 92 (213)
T d1sdia_ 86 TRYTLSL 92 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566554
No 10
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.93 E-value=1.1e+02 Score=19.32 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.9
Q ss_pred hHHHHHHHhhhCCCcccc
Q 028154 180 HFGELESIILETPAIQVH 197 (213)
Q Consensus 180 ~~~~l~slL~~sp~i~~~ 197 (213)
..++|+.-|.+.|.|.|.
T Consensus 27 ~~~~L~~WL~~nP~y~V~ 44 (58)
T d2ckaa1 27 RRAELEMWLQGHPEFAVD 44 (58)
T ss_dssp BHHHHHHHHHHCTTEEEC
T ss_pred CHHHHHHHHHHCCCCEEC
Confidence 468999999999999886
Done!