Query 028155
Match_columns 213
No_of_seqs 107 out of 1228
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02378 glutathione S-transfe 100.0 2.7E-42 5.8E-47 267.0 20.5 213 1-213 1-213 (213)
2 TIGR00862 O-ClC intracellular 100.0 2.5E-39 5.4E-44 251.6 21.0 210 2-212 2-233 (236)
3 PLN02817 glutathione dehydroge 100.0 4.6E-39 9.9E-44 255.1 18.3 210 2-212 55-264 (265)
4 KOG0406 Glutathione S-transfer 100.0 6.7E-34 1.4E-38 216.4 17.3 194 17-211 15-223 (231)
5 PRK09481 sspA stringent starva 100.0 1.8E-33 4E-38 217.4 18.0 180 18-204 17-207 (211)
6 KOG1422 Intracellular Cl- chan 100.0 4.2E-32 9.1E-37 200.3 20.0 210 1-210 2-216 (221)
7 PLN02473 glutathione S-transfe 100.0 1.2E-30 2.7E-35 202.0 16.9 185 1-199 1-211 (214)
8 PLN02395 glutathione S-transfe 100.0 3.2E-30 6.9E-35 199.8 16.6 185 1-200 1-211 (215)
9 PRK15113 glutathione S-transfe 100.0 5.6E-30 1.2E-34 198.4 17.6 174 19-202 15-211 (214)
10 TIGR01262 maiA maleylacetoacet 100.0 6.2E-30 1.3E-34 197.4 16.3 178 17-200 5-205 (210)
11 PRK13972 GSH-dependent disulfi 100.0 8.6E-30 1.9E-34 197.4 15.2 172 20-201 9-207 (215)
12 PRK10542 glutathionine S-trans 100.0 1.9E-29 4.1E-34 193.5 14.3 171 22-200 10-198 (201)
13 PTZ00057 glutathione s-transfe 100.0 7E-29 1.5E-33 191.0 13.9 172 20-201 13-201 (205)
14 PRK10357 putative glutathione 100.0 2E-28 4.3E-33 188.0 16.2 177 17-199 6-200 (202)
15 COG0625 Gst Glutathione S-tran 100.0 4.9E-28 1.1E-32 187.0 15.9 169 18-194 7-199 (211)
16 PRK11752 putative S-transferas 100.0 4.8E-28 1E-32 192.9 15.7 178 20-201 52-260 (264)
17 KOG0868 Glutathione S-transfer 100.0 4.3E-28 9.2E-33 174.5 13.1 181 15-201 9-209 (217)
18 PRK10387 glutaredoxin 2; Provi 99.9 4.6E-26 9.9E-31 175.8 14.3 166 17-194 6-208 (210)
19 KOG0867 Glutathione S-transfer 99.9 1.3E-25 2.8E-30 174.8 15.7 183 18-205 9-215 (226)
20 TIGR02182 GRXB Glutaredoxin, G 99.9 1.2E-24 2.6E-29 167.9 14.7 165 17-194 5-207 (209)
21 cd03061 GST_N_CLIC GST_N famil 99.9 9.7E-24 2.1E-28 139.8 10.8 85 2-87 5-89 (91)
22 KOG1695 Glutathione S-transfer 99.9 3.9E-23 8.5E-28 156.5 15.1 175 21-201 13-202 (206)
23 KOG4420 Uncharacterized conser 99.9 3.9E-23 8.5E-28 157.2 10.2 190 17-207 32-295 (325)
24 PLN02907 glutamate-tRNA ligase 99.8 2.1E-20 4.6E-25 165.3 14.7 156 1-192 1-159 (722)
25 PF13417 GST_N_3: Glutathione 99.8 7.5E-19 1.6E-23 113.6 7.7 71 17-87 4-74 (75)
26 cd03038 GST_N_etherase_LigE GS 99.8 2.9E-18 6.4E-23 113.3 8.2 80 3-85 1-84 (84)
27 cd03198 GST_C_CLIC GST_C famil 99.8 1.1E-17 2.3E-22 119.0 10.4 113 96-208 5-133 (134)
28 cd03201 GST_C_DHAR GST_C famil 99.7 1.6E-17 3.5E-22 117.1 10.9 118 92-210 4-121 (121)
29 cd03059 GST_N_SspA GST_N famil 99.7 1.3E-17 2.8E-22 107.2 8.3 68 17-84 6-73 (73)
30 PF13409 GST_N_2: Glutathione 99.7 2.2E-17 4.7E-22 105.2 7.8 65 19-83 1-70 (70)
31 cd03060 GST_N_Omega_like GST_N 99.7 2.1E-17 4.6E-22 105.6 7.8 65 16-80 5-70 (71)
32 cd03052 GST_N_GDAP1 GST_N fami 99.7 2.5E-17 5.5E-22 105.8 7.6 64 18-81 7-73 (73)
33 cd03080 GST_N_Metaxin_like GST 99.7 4.9E-17 1.1E-21 105.0 9.0 74 3-85 2-75 (75)
34 cd03058 GST_N_Tau GST_N family 99.7 4.6E-17 1E-21 104.9 8.3 68 17-84 6-74 (74)
35 KOG4244 Failed axon connection 99.7 1.2E-16 2.6E-21 122.6 11.8 177 3-190 46-273 (281)
36 cd03041 GST_N_2GST_N GST_N fam 99.7 9.4E-17 2E-21 104.3 7.6 68 17-84 7-77 (77)
37 cd03076 GST_N_Pi GST_N family, 99.7 9.2E-17 2E-21 103.2 7.2 63 20-82 10-72 (73)
38 cd03045 GST_N_Delta_Epsilon GS 99.7 1.3E-16 2.8E-21 102.7 7.7 66 17-82 6-74 (74)
39 cd03053 GST_N_Phi GST_N family 99.7 2.2E-16 4.7E-21 102.2 8.0 67 17-83 7-76 (76)
40 cd03050 GST_N_Theta GST_N fami 99.7 3.4E-16 7.5E-21 101.3 8.6 68 17-84 6-76 (76)
41 cd03055 GST_N_Omega GST_N fami 99.7 3.4E-16 7.4E-21 104.5 8.6 65 17-81 24-89 (89)
42 cd03054 GST_N_Metaxin GST_N fa 99.7 3.9E-16 8.4E-21 100.0 8.5 72 3-83 1-72 (72)
43 cd03048 GST_N_Ure2p_like GST_N 99.7 4.7E-16 1E-20 101.9 9.0 65 21-85 10-80 (81)
44 cd03043 GST_N_1 GST_N family, 99.7 5E-16 1.1E-20 99.7 7.7 66 16-81 6-73 (73)
45 cd03044 GST_N_EF1Bgamma GST_N 99.7 5.1E-16 1.1E-20 100.3 7.4 66 17-82 6-74 (75)
46 PF02798 GST_N: Glutathione S- 99.6 6.7E-16 1.5E-20 99.9 7.7 61 22-82 11-76 (76)
47 cd03056 GST_N_4 GST_N family, 99.6 6.6E-16 1.4E-20 99.0 7.5 65 17-81 6-73 (73)
48 cd03046 GST_N_GTT1_like GST_N 99.6 1.3E-15 2.8E-20 98.5 8.6 65 21-85 9-76 (76)
49 KOG3029 Glutathione S-transfer 99.6 3.4E-15 7.4E-20 115.3 11.3 167 17-190 96-355 (370)
50 cd03049 GST_N_3 GST_N family, 99.6 1.2E-15 2.5E-20 98.0 6.9 65 17-81 6-73 (73)
51 cd03051 GST_N_GTT2_like GST_N 99.6 1.2E-15 2.6E-20 98.0 6.9 65 17-81 6-74 (74)
52 cd03039 GST_N_Sigma_like GST_N 99.6 1.1E-15 2.3E-20 98.0 6.0 64 19-82 8-72 (72)
53 cd03047 GST_N_2 GST_N family, 99.6 2.2E-15 4.7E-20 96.8 7.4 64 18-81 7-73 (73)
54 cd03037 GST_N_GRX2 GST_N famil 99.6 2E-15 4.3E-20 96.5 7.2 65 17-82 6-71 (71)
55 cd03042 GST_N_Zeta GST_N famil 99.6 3.4E-15 7.3E-20 95.8 7.5 65 17-81 6-73 (73)
56 cd03057 GST_N_Beta GST_N famil 99.6 4.6E-15 1E-19 96.2 7.8 64 22-85 10-77 (77)
57 cd03040 GST_N_mPGES2 GST_N fam 99.6 7.8E-15 1.7E-19 95.2 6.8 66 18-85 8-77 (77)
58 cd03184 GST_C_Omega GST_C fami 99.6 2.8E-14 6.2E-19 101.1 10.2 107 103-209 17-123 (124)
59 cd03075 GST_N_Mu GST_N family, 99.6 1.2E-14 2.6E-19 95.4 7.2 65 20-84 9-82 (82)
60 COG2999 GrxB Glutaredoxin 2 [P 99.5 6.7E-14 1.4E-18 101.3 10.1 166 17-194 6-208 (215)
61 cd03077 GST_N_Alpha GST_N fami 99.5 6.1E-14 1.3E-18 91.4 7.9 63 20-85 10-77 (79)
62 COG0435 ECM4 Predicted glutath 99.5 3.9E-14 8.4E-19 109.4 7.7 192 19-213 59-302 (324)
63 cd03079 GST_N_Metaxin2 GST_N f 99.5 7.4E-14 1.6E-18 89.0 6.8 73 4-83 2-74 (74)
64 cd00570 GST_N_family Glutathio 99.5 1E-13 2.3E-18 87.4 7.3 65 17-81 6-71 (71)
65 cd03203 GST_C_Lambda GST_C fam 99.5 1.3E-13 2.8E-18 97.1 8.4 86 121-207 33-119 (120)
66 KOG2903 Predicted glutathione 99.5 1.1E-13 2.3E-18 106.0 8.3 194 19-213 45-304 (319)
67 cd03190 GST_C_ECM4_like GST_C 99.4 7.7E-13 1.7E-17 95.9 8.6 90 117-208 36-127 (142)
68 cd03185 GST_C_Tau GST_C family 99.4 9.1E-13 2E-17 93.4 8.4 88 117-207 34-123 (126)
69 KOG3027 Mitochondrial outer me 99.4 1.5E-12 3.3E-17 96.5 9.1 177 3-190 18-248 (257)
70 cd03210 GST_C_Pi GST_C family, 99.4 6.2E-13 1.3E-17 94.5 6.2 80 117-201 34-114 (126)
71 cd03209 GST_C_Mu GST_C family, 99.4 1.6E-12 3.4E-17 91.7 7.3 79 117-202 34-112 (121)
72 PF00043 GST_C: Glutathione S- 99.4 3.5E-12 7.5E-17 85.8 8.0 68 117-191 27-95 (95)
73 cd03208 GST_C_Alpha GST_C fami 99.4 2.4E-12 5.2E-17 92.7 7.3 75 122-201 43-117 (137)
74 cd03196 GST_C_5 GST_C family, 99.4 2.8E-12 6E-17 89.6 7.4 76 117-197 40-115 (115)
75 cd03186 GST_C_SspA GST_N famil 99.3 3.6E-12 7.9E-17 87.7 7.3 73 117-196 34-106 (107)
76 cd03207 GST_C_8 GST_C family, 99.3 2.5E-12 5.4E-17 88.0 5.9 74 117-199 29-102 (103)
77 cd03078 GST_N_Metaxin1_like GS 99.3 1.6E-11 3.6E-16 78.5 8.6 72 3-83 1-72 (73)
78 cd03188 GST_C_Beta GST_C famil 99.3 5E-12 1.1E-16 87.8 6.5 73 117-197 42-114 (114)
79 cd03178 GST_C_Ure2p_like GST_C 99.3 4.3E-12 9.2E-17 88.2 6.0 74 117-197 39-112 (113)
80 cd03191 GST_C_Zeta GST_C famil 99.3 6.6E-12 1.4E-16 88.4 6.9 76 119-200 45-120 (121)
81 cd03187 GST_C_Phi GST_C family 99.3 5.5E-12 1.2E-16 88.2 5.6 75 117-197 44-118 (118)
82 cd03204 GST_C_GDAP1 GST_C fami 99.3 1.8E-11 3.9E-16 84.5 7.6 72 117-193 28-111 (111)
83 cd03177 GST_C_Delta_Epsilon GS 99.3 1.9E-11 4.2E-16 85.7 6.9 78 116-200 36-113 (118)
84 PF13410 GST_C_2: Glutathione 99.3 1.4E-11 3.1E-16 77.9 5.7 65 117-186 5-69 (69)
85 cd03183 GST_C_Theta GST_C fami 99.2 2.3E-11 4.9E-16 86.2 6.5 75 117-197 44-120 (126)
86 cd03182 GST_C_GTT2_like GST_C 99.2 4E-11 8.6E-16 83.8 7.2 70 117-193 48-117 (117)
87 cd03206 GST_C_7 GST_C family, 99.2 4.9E-11 1.1E-15 81.1 7.1 69 117-193 32-100 (100)
88 cd03180 GST_C_2 GST_C family, 99.2 6E-11 1.3E-15 81.8 7.0 68 118-193 43-110 (110)
89 PF14497 GST_C_3: Glutathione 99.2 5.5E-11 1.2E-15 80.7 6.5 66 117-189 34-99 (99)
90 cd03181 GST_C_EFB1gamma GST_C 99.2 2.4E-11 5.3E-16 85.6 4.7 80 117-201 39-118 (123)
91 cd03189 GST_C_GTT1_like GST_C 99.1 1.7E-10 3.6E-15 80.9 6.9 66 118-191 54-119 (119)
92 cd03200 GST_C_JTV1 GST_C famil 99.1 2.8E-10 6.1E-15 76.8 7.6 94 77-190 1-96 (96)
93 TIGR02190 GlrX-dom Glutaredoxi 99.1 3.6E-10 7.8E-15 73.5 7.7 65 17-81 15-79 (79)
94 cd03195 GST_C_4 GST_C family, 99.1 1.8E-10 3.9E-15 80.3 6.7 72 117-198 41-112 (114)
95 cd03194 GST_C_3 GST_C family, 99.1 3.3E-10 7.1E-15 79.0 7.5 73 117-198 40-113 (114)
96 cd03202 GST_C_etherase_LigE GS 99.1 4.5E-10 9.9E-15 79.5 7.3 68 117-190 57-124 (124)
97 cd03193 GST_C_Metaxin GST_C fa 98.9 5.8E-10 1.3E-14 74.0 3.2 67 118-188 19-88 (88)
98 cd00299 GST_C_family Glutathio 98.9 2.3E-09 4.9E-14 72.2 6.2 66 117-187 35-100 (100)
99 cd03179 GST_C_1 GST_C family, 98.9 3.1E-09 6.8E-14 72.5 5.8 64 117-188 42-105 (105)
100 cd03029 GRX_hybridPRX5 Glutare 98.9 1.1E-08 2.5E-13 65.1 7.0 65 17-81 8-72 (72)
101 cd03192 GST_C_Sigma_like GST_C 98.8 5.5E-09 1.2E-13 71.3 5.3 66 117-187 38-104 (104)
102 cd03211 GST_C_Metaxin2 GST_C f 98.8 3.8E-09 8.2E-14 74.9 3.8 73 114-188 53-126 (126)
103 PRK10638 glutaredoxin 3; Provi 98.8 1.8E-08 4E-13 66.0 6.6 64 17-80 9-73 (83)
104 cd03197 GST_C_mPGES2 GST_C fam 98.8 3.4E-08 7.3E-13 71.2 7.2 78 107-189 67-145 (149)
105 KOG3028 Translocase of outer m 98.7 4E-07 8.7E-12 72.3 13.4 174 3-189 2-233 (313)
106 PRK10329 glutaredoxin-like pro 98.7 8.9E-08 1.9E-12 62.4 7.0 62 1-71 1-62 (81)
107 cd03205 GST_C_6 GST_C family, 98.7 6.7E-08 1.5E-12 65.3 6.2 63 117-187 36-98 (98)
108 cd03212 GST_C_Metaxin1_3 GST_C 98.6 2.5E-08 5.4E-13 71.7 3.1 69 117-189 63-134 (137)
109 COG0695 GrxC Glutaredoxin and 98.5 7E-07 1.5E-11 58.0 8.1 69 1-78 1-72 (80)
110 cd03027 GRX_DEP Glutaredoxin ( 98.4 8.1E-07 1.8E-11 56.6 6.4 61 17-77 8-69 (73)
111 cd02066 GRX_family Glutaredoxi 98.4 8.2E-07 1.8E-11 55.8 6.3 63 17-79 7-70 (72)
112 TIGR02196 GlrX_YruB Glutaredox 98.4 1.3E-06 2.8E-11 55.3 6.4 64 17-80 7-73 (74)
113 PRK11200 grxA glutaredoxin 1; 98.4 3.9E-06 8.4E-11 55.1 8.2 76 1-85 1-84 (85)
114 PF10568 Tom37: Outer mitochon 98.4 3.3E-06 7.2E-11 53.6 7.5 67 5-80 1-71 (72)
115 cd02976 NrdH NrdH-redoxin (Nrd 98.3 1.5E-06 3.3E-11 54.8 5.7 57 17-73 7-64 (73)
116 cd03028 GRX_PICOT_like Glutare 98.3 6.5E-06 1.4E-10 54.7 8.3 74 2-79 9-83 (90)
117 cd03418 GRX_GRXb_1_3_like Glut 98.3 3.1E-06 6.6E-11 54.1 6.5 64 17-80 7-72 (75)
118 TIGR02181 GRX_bact Glutaredoxi 98.3 4E-06 8.6E-11 54.2 6.7 65 16-80 5-70 (79)
119 TIGR00365 monothiol glutaredox 98.3 8E-06 1.7E-10 55.1 8.2 74 2-79 13-87 (97)
120 TIGR02189 GlrX-like_plant Glut 98.2 1.9E-05 4E-10 53.5 9.1 62 18-79 16-81 (99)
121 PF14834 GST_C_4: Glutathione 98.2 3.2E-06 7E-11 57.6 4.9 72 117-198 42-113 (117)
122 TIGR02194 GlrX_NrdH Glutaredox 98.2 4.2E-06 9.1E-11 53.2 5.1 53 16-68 5-57 (72)
123 TIGR02183 GRXA Glutaredoxin, G 98.1 1.3E-05 2.7E-10 52.9 6.9 70 16-85 6-83 (86)
124 PF00462 Glutaredoxin: Glutare 98.1 4.8E-06 1E-10 50.9 3.8 54 17-70 6-60 (60)
125 TIGR02200 GlrX_actino Glutared 98.0 1.5E-05 3.2E-10 50.9 5.1 58 17-74 7-67 (77)
126 PHA03050 glutaredoxin; Provisi 98.0 4.5E-05 9.7E-10 52.4 7.6 63 16-78 19-88 (108)
127 cd03419 GRX_GRXh_1_2_like Glut 98.0 6.5E-05 1.4E-09 48.6 7.9 65 18-82 8-76 (82)
128 TIGR02180 GRX_euk Glutaredoxin 97.9 0.00012 2.6E-09 47.5 8.0 65 17-81 6-76 (84)
129 PRK10824 glutaredoxin-4; Provi 97.9 0.00014 3E-09 50.4 8.3 74 2-79 16-90 (115)
130 cd03031 GRX_GRX_like Glutaredo 97.5 0.00073 1.6E-08 49.0 8.0 75 2-79 1-80 (147)
131 PTZ00062 glutaredoxin; Provisi 97.5 0.00087 1.9E-08 51.3 8.3 73 2-78 114-187 (204)
132 cd03199 GST_C_GRX2 GST_C famil 97.1 0.00062 1.4E-08 47.9 3.9 67 117-193 59-125 (128)
133 PF04399 Glutaredoxin2_C: Glut 97.0 0.0014 3E-08 46.6 5.0 68 117-194 58-125 (132)
134 PRK12759 bifunctional gluaredo 96.9 0.004 8.6E-08 53.0 7.2 63 16-78 8-79 (410)
135 KOG1752 Glutaredoxin and relat 96.8 0.013 2.8E-07 39.8 7.7 63 17-79 21-87 (104)
136 COG0278 Glutaredoxin-related p 96.2 0.043 9.3E-07 36.6 7.0 75 2-80 16-92 (105)
137 KOG1147 Glutamyl-tRNA syntheta 96.0 0.0071 1.5E-07 52.1 3.5 117 66-197 44-162 (712)
138 cd02973 TRX_GRX_like Thioredox 95.7 0.032 7E-07 34.3 4.9 53 17-72 8-65 (67)
139 cd03030 GRX_SH3BGR Glutaredoxi 95.3 0.089 1.9E-06 35.0 6.1 58 21-78 17-79 (92)
140 PF11287 DUF3088: Protein of u 94.3 0.72 1.6E-05 31.6 8.5 85 2-86 2-109 (112)
141 cd03036 ArsC_like Arsenate Red 93.4 0.13 2.9E-06 35.3 3.9 31 16-46 5-35 (111)
142 cd02977 ArsC_family Arsenate R 92.9 0.21 4.6E-06 33.8 4.3 28 17-44 6-33 (105)
143 PF05768 DUF836: Glutaredoxin- 92.9 0.74 1.6E-05 29.6 6.6 48 18-67 8-57 (81)
144 TIGR00412 redox_disulf_2 small 92.8 0.64 1.4E-05 29.4 6.1 50 18-71 8-61 (76)
145 PRK13344 spxA transcriptional 92.6 0.4 8.6E-06 34.1 5.5 29 17-45 7-35 (132)
146 PF04908 SH3BGR: SH3-binding, 92.5 0.22 4.8E-06 33.5 3.8 74 1-77 1-84 (99)
147 PF09635 MetRS-N: MetRS-N bind 92.2 0.34 7.3E-06 33.7 4.4 49 24-85 13-63 (122)
148 PRK01655 spxA transcriptional 91.6 0.31 6.8E-06 34.6 4.0 28 17-44 7-34 (131)
149 cd01659 TRX_superfamily Thiore 91.2 0.46 9.9E-06 27.5 4.0 49 17-65 6-59 (69)
150 PF13192 Thioredoxin_3: Thiore 90.6 0.94 2E-05 28.6 5.1 50 20-73 10-63 (76)
151 TIGR01617 arsC_related transcr 90.2 0.37 7.9E-06 33.4 3.2 29 16-44 5-33 (117)
152 KOG0911 Glutaredoxin-related p 90.1 1.7 3.6E-05 33.7 6.8 74 2-79 140-214 (227)
153 KOG3425 Uncharacterized conser 89.6 2.9 6.3E-05 29.1 7.0 74 9-82 34-121 (128)
154 cd03032 ArsC_Spx Arsenate Redu 89.3 0.69 1.5E-05 31.9 4.0 28 17-44 7-34 (115)
155 PF11801 Tom37_C: Tom37 C-term 89.2 1.5 3.2E-05 32.6 5.9 41 122-162 112-154 (168)
156 PRK12559 transcriptional regul 88.9 0.82 1.8E-05 32.5 4.2 30 17-46 7-36 (131)
157 TIGR00411 redox_disulf_1 small 88.3 2.1 4.6E-05 26.9 5.7 51 17-68 8-62 (82)
158 cd03035 ArsC_Yffb Arsenate Red 87.6 1.2 2.6E-05 30.3 4.2 30 16-45 5-34 (105)
159 cd03026 AhpF_NTD_C TRX-GRX-lik 85.7 2.5 5.3E-05 27.7 4.8 51 18-71 22-77 (89)
160 PF06110 DUF953: Eukaryotic pr 85.3 1.5 3.3E-05 30.6 3.8 69 5-74 24-106 (119)
161 PHA02125 thioredoxin-like prot 83.9 3.5 7.5E-05 25.8 4.8 46 17-65 7-52 (75)
162 cd03033 ArsC_15kD Arsenate Red 83.5 2.2 4.8E-05 29.4 4.0 29 17-45 7-35 (113)
163 COG1393 ArsC Arsenate reductas 83.3 3.4 7.3E-05 28.7 4.9 35 1-44 1-35 (117)
164 COG4545 Glutaredoxin-related p 81.8 4.8 0.0001 25.5 4.6 53 19-71 11-77 (85)
165 PRK10026 arsenate reductase; P 80.7 2.8 6.1E-05 30.2 3.8 27 18-44 10-36 (141)
166 KOG1668 Elongation factor 1 be 76.8 2.4 5.2E-05 32.9 2.6 59 124-194 10-68 (231)
167 TIGR01295 PedC_BrcD bacterioci 69.4 20 0.00044 24.8 5.8 53 17-69 32-102 (122)
168 TIGR01616 nitro_assoc nitrogen 60.4 20 0.00043 25.2 4.3 27 18-44 9-35 (126)
169 cd02975 PfPDO_like_N Pyrococcu 57.7 14 0.00031 25.1 3.2 48 17-65 31-81 (113)
170 PRK10853 putative reductase; P 56.3 17 0.00036 25.2 3.3 27 17-43 7-33 (118)
171 cd03034 ArsC_ArsC Arsenate Red 55.1 17 0.00036 24.9 3.1 27 17-43 6-32 (112)
172 PRK09266 hypothetical protein; 54.1 19 0.00042 28.6 3.8 58 29-86 200-260 (266)
173 KOG2824 Glutaredoxin-related p 53.4 25 0.00055 28.2 4.2 58 22-79 149-211 (281)
174 TIGR00014 arsC arsenate reduct 52.3 31 0.00067 23.6 4.1 28 17-44 6-33 (114)
175 COG5515 Uncharacterized conser 51.5 21 0.00047 21.5 2.7 27 1-32 1-27 (70)
176 TIGR03143 AhpF_homolog putativ 51.2 33 0.00071 30.6 5.1 52 18-72 486-542 (555)
177 PF03960 ArsC: ArsC family; I 50.7 16 0.00034 24.8 2.4 27 17-43 3-29 (110)
178 PHA02278 thioredoxin-like prot 48.5 80 0.0017 21.1 6.5 54 17-70 23-85 (103)
179 cd04911 ACT_AKiii-YclM-BS_1 AC 47.2 16 0.00034 23.3 1.8 25 21-45 16-40 (76)
180 cd02951 SoxW SoxW family; SoxW 46.9 72 0.0016 21.7 5.4 48 17-64 23-89 (125)
181 cd02953 DsbDgamma DsbD gamma f 46.6 69 0.0015 20.9 5.1 47 17-64 20-77 (104)
182 cd02949 TRX_NTR TRX domain, no 41.7 96 0.0021 20.0 5.2 53 17-70 22-80 (97)
183 TIGR03140 AhpF alkyl hydropero 40.5 1.4E+02 0.0031 26.3 7.4 55 18-73 127-184 (515)
184 PRK15317 alkyl hydroperoxide r 39.6 1.3E+02 0.0029 26.4 7.1 65 18-83 126-197 (517)
185 cd02947 TRX_family TRX family; 39.6 89 0.0019 19.1 5.4 48 18-68 20-74 (93)
186 cd02984 TRX_PICOT TRX domain, 39.3 86 0.0019 20.0 4.6 52 17-69 23-80 (97)
187 PF00085 Thioredoxin: Thioredo 39.1 1E+02 0.0022 19.6 8.4 64 17-82 26-102 (103)
188 TIGR02187 GlrX_arch Glutaredox 38.3 62 0.0013 24.8 4.3 49 17-66 142-193 (215)
189 cd02959 ERp19 Endoplasmic reti 34.3 1.5E+02 0.0032 20.3 5.3 54 17-71 28-91 (117)
190 cd02989 Phd_like_TxnDC9 Phosdu 32.9 1.6E+02 0.0034 19.9 6.4 55 17-72 31-90 (113)
191 cd00449 PLPDE_IV PyridoxaL 5'- 31.9 42 0.00091 26.3 2.5 55 29-83 196-255 (256)
192 cd02952 TRP14_like Human TRX-r 31.8 1.8E+02 0.0038 20.2 8.3 70 3-73 24-106 (119)
193 cd02955 SSP411 TRX domain, SSP 30.8 1.9E+02 0.004 20.2 5.9 57 17-73 24-97 (124)
194 TIGR01764 excise DNA binding d 30.7 77 0.0017 17.1 2.9 25 57-81 24-48 (49)
195 cd02963 TRX_DnaJ TRX domain, D 29.6 1.7E+02 0.0038 19.4 5.8 52 17-69 33-91 (111)
196 cd02954 DIM1 Dim1 family; Dim1 29.6 1.9E+02 0.0041 19.9 5.4 52 17-69 23-80 (114)
197 cd01557 BCAT_beta_family BCAT_ 28.6 35 0.00075 27.4 1.5 56 29-84 211-273 (279)
198 PF10776 DUF2600: Protein of u 27.1 2.2E+02 0.0048 23.7 5.8 21 70-90 58-78 (330)
199 PF00731 AIRC: AIR carboxylase 26.7 94 0.002 22.6 3.3 32 19-50 12-43 (150)
200 TIGR02681 phage_pRha phage reg 26.4 60 0.0013 22.1 2.2 26 60-85 2-28 (108)
201 PTZ00051 thioredoxin; Provisio 26.2 1.8E+02 0.0039 18.5 5.2 52 17-69 27-83 (98)
202 cd02956 ybbN ybbN protein fami 25.9 1.8E+02 0.0038 18.5 4.4 52 17-69 21-78 (96)
203 cd02985 TRX_CDSP32 TRX family, 25.8 2E+02 0.0043 18.8 5.3 53 17-69 24-83 (103)
204 PRK06606 branched-chain amino 24.7 63 0.0014 26.3 2.4 54 29-82 228-286 (306)
205 PF04134 DUF393: Protein of un 24.5 2.2E+02 0.0048 18.9 5.5 63 19-82 6-76 (114)
206 PRK13356 aminotransferase; Pro 23.6 66 0.0014 25.8 2.3 54 29-83 221-277 (286)
207 TIGR01162 purE phosphoribosyla 23.4 1.7E+02 0.0036 21.5 4.1 30 19-48 10-39 (156)
208 PRK06092 4-amino-4-deoxychoris 23.1 89 0.0019 24.8 3.0 55 29-84 208-265 (268)
209 TIGR01122 ilvE_I branched-chai 22.7 77 0.0017 25.6 2.6 54 29-82 220-278 (298)
210 PHA03158 hypothetical protein; 22.3 3.6E+02 0.0078 20.6 6.6 66 66-135 205-271 (273)
211 PRK07650 4-amino-4-deoxychoris 22.3 90 0.002 25.0 2.8 55 29-83 212-270 (283)
212 PF12728 HTH_17: Helix-turn-he 21.8 1.6E+02 0.0034 16.4 3.1 26 57-82 24-49 (51)
213 cd02957 Phd_like Phosducin (Ph 21.8 2.5E+02 0.0053 18.7 4.6 54 17-72 33-91 (113)
214 PRK09381 trxA thioredoxin; Pro 20.6 2.6E+02 0.0056 18.2 6.4 53 17-70 30-88 (109)
215 PF11734 TilS_C: TilS substrat 20.4 45 0.00097 20.8 0.6 32 22-70 19-50 (74)
216 cd03020 DsbA_DsbC_DsbG DsbA fa 20.3 1.1E+02 0.0025 22.8 2.9 15 18-32 87-101 (197)
No 1
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=2.7e-42 Score=267.02 Aligned_cols=213 Identities=75% Similarity=1.249 Sum_probs=182.1
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHH
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL 80 (213)
|.|+||+|++-+..+.++.||||+||+++|+++|++|+.+.+++.+++++|+++||.|+||+|+++|.+|+||.+|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL 80 (213)
T PLN02378 1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGIL 80 (213)
T ss_pred CceehhhhccCCCCCCCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 89999999999887889999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HHhCCCCCCCCChHHHhhhccchHHHHHhhcCCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHH
Q 028155 81 EEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYH 160 (213)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~ 160 (213)
+++++...+.++.+++.+...++..+..+.......+...+.+.+.|+.||++|+.++++|++|+++|+|||++++++.+
T Consensus 81 ~~~~~~~~l~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~ 160 (213)
T PLN02378 81 EEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYH 160 (213)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHH
Confidence 99998665554556666666666655555444333345556788899999999986446999999999999999999988
Q ss_pred HHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHHHHHHhhcccccC
Q 028155 161 LQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVNA 213 (213)
Q Consensus 161 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 213 (213)
+......+.++++..++|+|.+|+++|.+||++++++.+.+..+..|..++||
T Consensus 161 l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~~~~~~~~~ 213 (213)
T PLN02378 161 LQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVNP 213 (213)
T ss_pred HHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCChHHHHHHHHhhcCC
Confidence 76433333344445789999999999999999999999999999999999998
No 2
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=2.5e-39 Score=251.60 Aligned_cols=210 Identities=26% Similarity=0.503 Sum_probs=174.0
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
.+|||+|+++++ .++..||+|++|+++|.++|++|+.+.+++.+++++|+++||.|+||+|+++|.+|+||.+|++||+
T Consensus 2 ~~el~~ka~~~~-~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 2 EIELFVKAGSDG-ESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred ceEEEEecCCCC-CcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 489999998654 8899999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HhCCCC---CCCCChH-HHhhhccchHHHHHhhcCCCCC--chHHHHHHHHHHHHHHHhhhC----------------CC
Q 028155 82 EKYPEP---SLTNPPE-FASLGSKIFPSFVNFLKSKDPN--DGTEQALLEELKALDEHLKTH----------------GG 139 (213)
Q Consensus 82 ~~~~~~---~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~le~~L~~~----------------~~ 139 (213)
+.++.+ .+.|.+. .......++..+..++.+..+. +...+.+.+.|..||+.|.+. ++
T Consensus 81 e~~~~~~~p~l~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~ 160 (236)
T TIGR00862 81 ETLCPPRYPKLSPKHPESNTAGLDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRR 160 (236)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCC
Confidence 999752 2333222 1222234666665555443221 334556899999999999841 36
Q ss_pred CcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHHHHHHhhccccc
Q 028155 140 PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 212 (213)
Q Consensus 140 ~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 212 (213)
+|+.|+++|+|||++++.+.++........++++.+++|+|.+|++++.+||+|+++++..+.++..|++++|
T Consensus 161 ~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~ 233 (236)
T TIGR00862 161 KFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAK 233 (236)
T ss_pred CcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhh
Confidence 9999999999999999999998765444567777899999999999999999999999999999999999764
No 3
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=4.6e-39 Score=255.14 Aligned_cols=210 Identities=62% Similarity=1.136 Sum_probs=180.7
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
++++++|++....+++..||||+|++++|+++|++|+.+.+++.+++++|+++||.|+||+|+++|..|+||.+|++||+
T Consensus 55 ~~~~~~~~~~~~~~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 55 PLEVCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred cHHHHHhcccCCCCcCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 46788888887777899999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HhCCCCCCCCChHHHhhhccchHHHHHhhcCCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHH
Q 028155 82 EKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHL 161 (213)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~ 161 (213)
++++.+.+.++.+++.+.++++..+..++......+...+.+.+.|..||+.|+++ ++|++|+++|+|||++++.+.++
T Consensus 135 e~~p~~~L~~~~era~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-g~yl~Gd~~SlADi~l~p~L~~l 213 (265)
T PLN02817 135 EKYPDPPLATPPEKASVGSKIFSTFIGFLKSKDPGDGTEQALLDELTSFDDYIKEN-GPFINGEKISAADLSLGPKLYHL 213 (265)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcC-CCeeCCCCCCHHHHHHHHHHHHH
Confidence 99997767666777888878877776665544433444567888999999999864 58999999999999999999887
Q ss_pred HHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHHHHHHhhccccc
Q 028155 162 QVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 212 (213)
Q Consensus 162 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 212 (213)
........++++.+.+|+|.+|++++.++|+|++++...+.++..|..|+.
T Consensus 214 ~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~~~~~ 264 (265)
T PLN02817 214 EIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPKVM 264 (265)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhHhhhc
Confidence 643333345555678999999999999999999999999999999998863
No 4
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-34 Score=216.40 Aligned_cols=194 Identities=23% Similarity=0.445 Sum_probs=160.8
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhC-CCCCCceEEeCCeeecCcHHHHHHHHHhCC-CCCCCCChH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEIS-PEGKVPVVKFDDKWVADSDVIVRIIEEKYP-EPSLTNPPE 94 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~-~~~l~~~~~ 94 (213)
++.|||++|++++|.++||+|+.+..++.+++++|++.| +.++||+|+|+|..|+||..|++|||+.++ .++++|.+.
T Consensus 15 ~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~iLP~DP 94 (231)
T KOG0406|consen 15 MWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPILPSDP 94 (231)
T ss_pred eecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCCCCCCH
Confidence 678999999999999999999999999999999999999 679999999999999999999999999999 488999887
Q ss_pred HHhhhccchHHHH---------Hhh--cCCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHH
Q 028155 95 FASLGSKIFPSFV---------NFL--KSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQV 163 (213)
Q Consensus 95 ~~~~~~~l~~~~~---------~~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~ 163 (213)
..+..+.+...+. ... .+++..+...+++.+.|+.||+.|.. +++|+.|+++|+.|+++++++.++..
T Consensus 95 y~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~G~vDi~~~p~~~~~~~ 173 (231)
T KOG0406|consen 95 YERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK-GKDFFGGETIGFVDIAIGPSFERWLA 173 (231)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcCHhhhhHHhhHHHHHH
Confidence 5554444332221 122 22233367778899999999999993 36999999999999999988887765
Q ss_pred HHhhccC--CCCCccchHHHHHHHHhhcCcccccccchHHHHHHhhcccc
Q 028155 164 ALEHFKQ--WTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKV 211 (213)
Q Consensus 164 ~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 211 (213)
....+.+ ......+|+|.+|.++|.+++++++++++.+..+.-.+++.
T Consensus 174 ~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~ 223 (231)
T KOG0406|consen 174 VLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYR 223 (231)
T ss_pred HHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHH
Confidence 5444442 33357899999999999999999999999999998777643
No 5
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.8e-33 Score=217.39 Aligned_cols=180 Identities=22% Similarity=0.349 Sum_probs=143.3
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCCCCCCCChH--H
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPE--F 95 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l~~~~~--~ 95 (213)
+.||+|++|+++|+++|++|+.+.++..+++++|+++||.|+||+|+++|..|+||.||++||+++++...+.|.+. +
T Consensus 17 ~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~p~~~~~r 96 (211)
T PRK09481 17 PTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPLMPVYPVAR 96 (211)
T ss_pred CCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 45899999999999999999999999888888999999999999999999999999999999999999777777443 3
Q ss_pred HhhhccchH---HHH---HhhcCCCC--CchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhh
Q 028155 96 ASLGSKIFP---SFV---NFLKSKDP--NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEH 167 (213)
Q Consensus 96 ~~~~~~l~~---~~~---~~~~~~~~--~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~ 167 (213)
+.+..++.. .+. ..+....+ .+...+.+.+.|..||+.|+++ +|++|+++|+|||++++.+.++..
T Consensus 97 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~~l~G~~~t~AD~~l~~~~~~~~~---- 170 (211)
T PRK09481 97 GESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEK--PYFMSEEFSLVDCYLAPLLWRLPV---- 170 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccC--CcccCCCccHHHHHHHHHHHHHHh----
Confidence 444433321 111 11112111 1455677888999999999865 999999999999999999877642
Q ss_pred ccCCCCC-ccchHHHHHHHHhhcCcccccccchHHHHH
Q 028155 168 FKQWTVP-ESLAHVHGYTKKLFALESFQKTKAEKQYVI 204 (213)
Q Consensus 168 ~~~~~~~-~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~ 204 (213)
.+.++. ..+|+|++|++++.+||+++++++..+...
T Consensus 171 -~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~~~ 207 (211)
T PRK09481 171 -LGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREM 207 (211)
T ss_pred -cCCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHHHH
Confidence 233332 578999999999999999999998776544
No 6
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-32 Score=200.29 Aligned_cols=210 Identities=48% Similarity=0.846 Sum_probs=194.0
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHH
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL 80 (213)
|.++|++|++.+++.....||||+++.+.|.++|++|..+.|++..+++||.++.|.|++|+|..|+..++||..|-++|
T Consensus 2 p~iel~vkA~s~~~~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~L 81 (221)
T KOG1422|consen 2 PEIELCVKAGSDGPDSLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFL 81 (221)
T ss_pred CceEEEEEeccCCcccCCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHH
Confidence 67999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCC--ChHHHhhhccchHHHHHhhcCCCCC--chHHHHHHHHHHHHHHHhhh-CCCCcccCCCCCchhhhhh
Q 028155 81 EEKYPEPSLTN--PPEFASLGSKIFPSFVNFLKSKDPN--DGTEQALLEELKALDEHLKT-HGGPFIAGEKVTAVDLSLA 155 (213)
Q Consensus 81 ~~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~le~~L~~-~~~~fl~G~~~t~AD~~l~ 155 (213)
++.++.+.+.. +.+.+.+..+++..+..++.+..+. +.....+.+.|..||++|.. +.++|+.|+++|.|||.+.
T Consensus 82 ee~l~~p~~~~~~~~E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLl 161 (221)
T KOG1422|consen 82 EEKLPPPKLPTLAPPESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLL 161 (221)
T ss_pred HHhcCCCCCcccCCHHHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhc
Confidence 99999765443 5677889999999999997554432 66778889999999999997 5579999999999999999
Q ss_pred hhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHHHHHHhhccc
Q 028155 156 PKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPK 210 (213)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~ 210 (213)
|-|+.++.+..++.+|+++++.+.+++|++.+.++.+|..+.++.+.++..|...
T Consensus 162 PKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 162 PKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPV 216 (221)
T ss_pred hhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhh
Confidence 9999999988999999999999999999999999999999999999999999873
No 7
>PLN02473 glutathione S-transferase
Probab=99.97 E-value=1.2e-30 Score=201.97 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=138.6
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHH
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~ 77 (213)
|.++||.. +.||+++||+++|+++|++|+.+.++..+ .+++|+++||.|+||+|+++|..|+||.||+
T Consensus 1 ~~~kLy~~---------~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~ 71 (214)
T PLN02473 1 MVVKVYGQ---------IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIA 71 (214)
T ss_pred CceEEecC---------CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHH
Confidence 56677732 23789999999999999999999998763 5678999999999999999999999999999
Q ss_pred HHHHHhCCCC--CCCCCh--HHHhhhccch------HH-----H-HHhhcC--CCCC-----chHHHHHHHHHHHHHHHh
Q 028155 78 RIIEEKYPEP--SLTNPP--EFASLGSKIF------PS-----F-VNFLKS--KDPN-----DGTEQALLEELKALDEHL 134 (213)
Q Consensus 78 ~yL~~~~~~~--~l~~~~--~~~~~~~~l~------~~-----~-~~~~~~--~~~~-----~~~~~~~~~~l~~le~~L 134 (213)
+||+++++.. .+.|.+ +++++..++. .. + ...+.. ..+. +...+++.+.|+.||+.|
T Consensus 72 ~YL~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 151 (214)
T PLN02473 72 RYYATKYADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRL 151 (214)
T ss_pred HHHHHHcCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999743 477644 3344333321 11 0 011111 1111 334567888999999999
Q ss_pred hhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccch
Q 028155 135 KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAE 199 (213)
Q Consensus 135 ~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 199 (213)
+++ +|++|+++|+|||++++.+.++..... .....+++|+|.+|++++.+||++++++++
T Consensus 152 ~~~--~~l~Gd~~t~ADi~~~~~~~~~~~~~~---~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 152 ATN--RYLGGDEFTLADLTHMPGMRYIMNETS---LSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred ccC--CcccCCCCCHHHHHHHHHHHHHHhccc---cHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 876 899999999999999998877642111 112346899999999999999999998764
No 8
>PLN02395 glutathione S-transferase
Probab=99.97 E-value=3.2e-30 Score=199.79 Aligned_cols=185 Identities=22% Similarity=0.296 Sum_probs=138.7
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCC---CCchhHHhhCCCCCCceEEeCCeeecCcHHHH
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~ 77 (213)
|++|||.. .. ++++|++++|+++|++|+.+.++.. ..+++|++.||.|+||+|+++|.+|+||.+|+
T Consensus 1 ~~~~ly~~---~~-------~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~ 70 (215)
T PLN02395 1 MVLKVYGP---AF-------ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIM 70 (215)
T ss_pred CeEEEEcC---Cc-------CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHH
Confidence 88999963 22 3579999999999999999999875 35678999999999999999999999999999
Q ss_pred HHHHHhCCCC--CCCCCh--HHHhhhccch-------HHHHH----h-h----cCCCCC---chHHHHHHHHHHHHHHHh
Q 028155 78 RIIEEKYPEP--SLTNPP--EFASLGSKIF-------PSFVN----F-L----KSKDPN---DGTEQALLEELKALDEHL 134 (213)
Q Consensus 78 ~yL~~~~~~~--~l~~~~--~~~~~~~~l~-------~~~~~----~-~----~~~~~~---~~~~~~~~~~l~~le~~L 134 (213)
+||+++++.. .+.|.+ +++++..++. ..+.. . + ...... +...+.+.+.++.||+.|
T Consensus 71 ~YL~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 150 (215)
T PLN02395 71 RYYAEKYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARL 150 (215)
T ss_pred HHHHHHcCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999752 477644 3344333321 11111 1 1 111111 344567888999999999
Q ss_pred hhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchH
Q 028155 135 KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEK 200 (213)
Q Consensus 135 ~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 200 (213)
+.+ +|++|+++|+|||++++++.++... .........+|+|.+|++++.++|++++++...
T Consensus 151 ~~~--~~l~G~~~s~ADi~l~~~~~~~~~~---~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 151 SKS--KYLAGDFVSLADLAHLPFTEYLVGP---IGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred cCC--ccccCCCcCHHHHHHHHHHHHHhcc---cchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 866 8999999999999999988766321 111122467899999999999999999987653
No 9
>PRK15113 glutathione S-transferase; Provisional
Probab=99.97 E-value=5.6e-30 Score=198.36 Aligned_cols=174 Identities=18% Similarity=0.234 Sum_probs=135.5
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCCCC---CCCC
Q 028155 19 DCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS---LTNP 92 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~---l~~~ 92 (213)
.||+|++++++|+++||+|+.+.++... ..++|+++||.|+||+|+++|.+|+||.||++||++.++... +.|.
T Consensus 15 ~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~~~~~~~l~p~ 94 (214)
T PRK15113 15 FSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPA 94 (214)
T ss_pred CCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCCCccccCCC
Confidence 3799999999999999999999998864 457899999999999999999999999999999999998655 7774
Q ss_pred h--HHHhhhccch---HHHHH---------hhcC---CCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhh
Q 028155 93 P--EFASLGSKIF---PSFVN---------FLKS---KDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLA 155 (213)
Q Consensus 93 ~--~~~~~~~~l~---~~~~~---------~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~ 155 (213)
+ +++++.+++. ..+.. .+.. ....+..++.+.+.++.||+.|+.. +.|++|+ +|+|||+++
T Consensus 95 ~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~l~G~-~TlADi~l~ 172 (214)
T PRK15113 95 DLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-QPNLFGE-WCIADTDLA 172 (214)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-CCEeeCC-ccHHHHHHH
Confidence 4 3444443331 11111 1111 1112556778899999999999854 4799995 999999999
Q ss_pred hhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHHH
Q 028155 156 PKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQY 202 (213)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 202 (213)
+.+.++.. .+..+ .|+|.+|++++.+||++++++++.+.
T Consensus 173 ~~l~~~~~-----~~~~~---~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 173 LMLNRLVL-----HGDEV---PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred HHHHHHHH-----cCCCC---CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 99887642 12222 29999999999999999999877654
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.97 E-value=6.2e-30 Score=197.42 Aligned_cols=178 Identities=24% Similarity=0.419 Sum_probs=137.4
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCC----CCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCCCCCCCC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINIS----DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNP 92 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l~~~ 92 (213)
++.||+++++|++|+++||+|+.+.++.. ..+++|.++||.|+||+|+++|..|+||.+|++||+++++..++.|.
T Consensus 5 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~l~p~ 84 (210)
T TIGR01262 5 YWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPA 84 (210)
T ss_pred CCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCCCCCC
Confidence 45689999999999999999999999862 24678999999999999999999999999999999999987777774
Q ss_pred h--HHHhhhccc-------hH----HHHHhhcCC---CCC---chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhh
Q 028155 93 P--EFASLGSKI-------FP----SFVNFLKSK---DPN---DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLS 153 (213)
Q Consensus 93 ~--~~~~~~~~l-------~~----~~~~~~~~~---~~~---~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~ 153 (213)
+ +++++.+++ .. .+...+... ... +...+.+.+.|+.||+.|+.++++|++|+++|+|||+
T Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~ 164 (210)
T TIGR01262 85 DPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTLADLC 164 (210)
T ss_pred CHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCHHHHH
Confidence 3 334333322 11 111121111 111 2234568899999999999765689999999999999
Q ss_pred hhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchH
Q 028155 154 LAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEK 200 (213)
Q Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 200 (213)
+++++.++.. .+.. .+++|+|++|+++|.+||++++++...
T Consensus 165 ~~~~l~~~~~-----~~~~-~~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 165 LVPQVYNAER-----FGVD-LTPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred HHHHHHHHHH-----cCCC-cccchHHHHHHHHHhcCHHHHHhCccc
Confidence 9999887642 1222 367999999999999999999998765
No 11
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.97 E-value=8.6e-30 Score=197.44 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=128.7
Q ss_pred ChhHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEe-----CC--eeecCcHHHHHHHHHhCCCCCC
Q 028155 20 CPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKF-----DD--KWVADSDVIVRIIEEKYPEPSL 89 (213)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~-----~~--~~l~eS~aI~~yL~~~~~~~~l 89 (213)
+|++++|+++|+++||+|+.+.+++.. ++++|+++||.|+||+|++ +| .+|+||.||++||++.++. +
T Consensus 9 ~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~~~~~~--l 86 (215)
T PRK13972 9 TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGL--F 86 (215)
T ss_pred CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHHHhcCC--C
Confidence 368999999999999999999998754 3678999999999999997 45 4799999999999999862 4
Q ss_pred CCC--hHHHhhhccchHH---HHHh------hcC--CC-CC---chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhh
Q 028155 90 TNP--PEFASLGSKIFPS---FVNF------LKS--KD-PN---DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDL 152 (213)
Q Consensus 90 ~~~--~~~~~~~~~l~~~---~~~~------~~~--~~-~~---~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~ 152 (213)
.|. .+++++.+++.-. +... +.. .. .. +.....+.+.|..||++|+.+ +|++|+++|+|||
T Consensus 87 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~Gd~~t~ADi 164 (215)
T PRK13972 87 LSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENS--PWLGGENYSIADI 164 (215)
T ss_pred CCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccC--ccccCCCCCHHHH
Confidence 443 3455555544211 1111 100 11 11 334456888999999999866 8999999999999
Q ss_pred hhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHH
Q 028155 153 SLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQ 201 (213)
Q Consensus 153 ~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 201 (213)
++++++..+.. .+.. ...+|+|.+|+++|.+||++++++.+.+
T Consensus 165 ~l~~~~~~~~~-----~~~~-~~~~P~l~~w~~r~~~rp~~~~~~~~~~ 207 (215)
T PRK13972 165 ACWPWVNAWTR-----QRID-LAMYPAVKNWHERIRSRPATGQALLKAQ 207 (215)
T ss_pred HHHHHHHHHhh-----cCCc-chhCHHHHHHHHHHHhCHHHHHHHHHhc
Confidence 99887754321 1222 3679999999999999999999876554
No 12
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.97 E-value=1.9e-29 Score=193.46 Aligned_cols=171 Identities=17% Similarity=0.287 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHcCCCCeEEEecCCC----CchhHHhhCCCCCCceEE-eCCeeecCcHHHHHHHHHhCCCCCCC-CC--h
Q 028155 22 FSQRALLTLEEKKVPYKRHLINISD----KPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLT-NP--P 93 (213)
Q Consensus 22 ~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~~l~-~~--~ 93 (213)
.+++++++|+++||+|+.+.+++.. .+++|.++||.|+||+|+ ++|.+|+||.+|++||+++++...+. |. .
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~~~l~~p~~~~ 89 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVGSL 89 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcccccCCCCCcH
Confidence 5889999999999999999998853 347899999999999998 57899999999999999999876655 32 2
Q ss_pred HHHhhhccc-------hHHHHHhhcCCCCC---chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHH
Q 028155 94 EFASLGSKI-------FPSFVNFLKSKDPN---DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQV 163 (213)
Q Consensus 94 ~~~~~~~~l-------~~~~~~~~~~~~~~---~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~ 163 (213)
+++++.+++ ...+...+...... +...+.+.+.|+.||+.|+.+ +|++|+++|+|||++++++.+...
T Consensus 90 ~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~s~ADi~l~~~~~~~~~ 167 (201)
T PRK10542 90 SRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADE--QWICGQRFTIADAYLFTVLRWAYA 167 (201)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCC--CeeeCCCCcHHhHHHHHHHHHhhc
Confidence 344443333 22222333222111 334567889999999999866 899999999999999998887642
Q ss_pred HHhhccCCCCCccchHHHHHHHHhhcCcccccccchH
Q 028155 164 ALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEK 200 (213)
Q Consensus 164 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 200 (213)
.+.. ...+|+|.+|+++|.++|++++++.+.
T Consensus 168 -----~~~~-~~~~p~l~~w~~~~~~~p~~k~~~~~~ 198 (201)
T PRK10542 168 -----VKLN-LEGLEHIAAYMQRVAERPAVAAALKAE 198 (201)
T ss_pred -----cCCC-cccchHHHHHHHHHHcCHHHHHHHHHc
Confidence 1223 367999999999999999999988654
No 13
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.96 E-value=7e-29 Score=190.99 Aligned_cols=172 Identities=13% Similarity=0.177 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHcCCCCeEEEecCCCCchhHH--------hhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCCCCCCC
Q 028155 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFM--------EISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTN 91 (213)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l~~ 91 (213)
++.++++|++|+++|++|+.+.++.. .+ +++ ..||.|+||+|++||.+|+||.||++||+++++.. +
T Consensus 13 ~~~~~~vrl~L~~~gi~ye~~~~~~~-~~-~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~~~---~ 87 (205)
T PTZ00057 13 RGKAELIRLIFAYLGIEYTDKRFGEN-GD-AFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKYKIC---G 87 (205)
T ss_pred CcchHHHHHHHHHcCCCeEEEecccc-ch-HHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHcCCC---C
Confidence 46799999999999999999977432 22 333 47999999999999999999999999999999732 2
Q ss_pred ChHHHhhhccchH-HHHHh----hc----CCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHH
Q 028155 92 PPEFASLGSKIFP-SFVNF----LK----SKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQ 162 (213)
Q Consensus 92 ~~~~~~~~~~l~~-~~~~~----~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~ 162 (213)
....++...++.. ....+ .. .....+...+.+.+.++.||+.|++++++|++|+++|+||+++++++.++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~ 167 (205)
T PTZ00057 88 ESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIE 167 (205)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHH
Confidence 3333332222211 11111 00 011113445678899999999998765689999999999999999888765
Q ss_pred HHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHH
Q 028155 163 VALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQ 201 (213)
Q Consensus 163 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 201 (213)
... +. ....+|+|.+|++++.++|+++++++++.
T Consensus 168 ~~~----~~-~l~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 168 TKY----PN-SLKNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred HhC----hh-hhccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 211 11 23689999999999999999999987654
No 14
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.96 E-value=2e-28 Score=188.00 Aligned_cols=177 Identities=17% Similarity=0.141 Sum_probs=134.0
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEE-eCCeeecCcHHHHHHHHHhCCCCCCCCChH-
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPE- 94 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~~l~~~~~- 94 (213)
.+.||++++|+++|+++||+|+.+.++...+++++.+.||.|+||+|+ ++|.+|+||.+|++||++.++...+.|.+.
T Consensus 6 ~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~ 85 (202)
T PRK10357 6 SYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAMLPRDPL 85 (202)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCCCCCHH
Confidence 346899999999999999999999988777777888899999999998 578999999999999999987766777443
Q ss_pred -HHhhhccch------HHHHHh----hc-CCCCC----chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhH
Q 028155 95 -FASLGSKIF------PSFVNF----LK-SKDPN----DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKL 158 (213)
Q Consensus 95 -~~~~~~~l~------~~~~~~----~~-~~~~~----~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l 158 (213)
++++.+++. ...... .. ..... +...+.+.+.|+.||+.|.++ + ++|+++|+|||++++.+
T Consensus 86 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~-l~Gd~~t~ADi~l~~~l 162 (202)
T PRK10357 86 AALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDG--T-LKTDTVNLATIAIACAV 162 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccC--c-ccCCCcCHHHHHHHHHH
Confidence 333322211 111111 11 11111 244567889999999999865 6 99999999999999999
Q ss_pred HHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccch
Q 028155 159 YHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAE 199 (213)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 199 (213)
.++.... . +..+..++|+|.+|++++.+||+|+++.+.
T Consensus 163 ~~~~~~~--~-~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 163 GYLNFRR--V-APGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHhcc--c-CcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 8775311 1 112235789999999999999999998764
No 15
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-28 Score=187.05 Aligned_cols=169 Identities=27% Similarity=0.479 Sum_probs=132.2
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecCCC--CchhHHhhCCCCCCceEEeCCe-eecCcHHHHHHHHHhCCCCCCCCChH
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEISPEGKVPVVKFDDK-WVADSDVIVRIIEEKYPEPSLTNPPE 94 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~g~vP~L~~~~~-~l~eS~aI~~yL~~~~~~~~l~~~~~ 94 (213)
+.||||.|++++|.++|++|+.+.++... .+++|+.+||.|+||+|++++. +|+||.||++||+++++...+.|.+.
T Consensus 7 ~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~l~p~~~ 86 (211)
T COG0625 7 PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPPLLPADP 86 (211)
T ss_pred CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCCcCCCCc
Confidence 34689999999999999999999999974 7788999999999999998765 89999999999999999765776443
Q ss_pred -----HHhhhccc-------hHHHHHhhcC----CCC--C---chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhh
Q 028155 95 -----FASLGSKI-------FPSFVNFLKS----KDP--N---DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLS 153 (213)
Q Consensus 95 -----~~~~~~~l-------~~~~~~~~~~----~~~--~---~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~ 153 (213)
+..+..++ ...+...... ... . +...+.+.+.++.+|..|+.+ +|++|+++|+|||+
T Consensus 87 ~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~tiAD~~ 164 (211)
T COG0625 87 LARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADG--PYLAGDRFTIADIA 164 (211)
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccC--CcccCCCCCHHHHH
Confidence 33332332 2222221111 111 1 455678899999999999986 99999999999999
Q ss_pred hhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccc
Q 028155 154 LAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQ 194 (213)
Q Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 194 (213)
+++.+.++.. .+... ..+|++.+|++++.++|+++
T Consensus 165 ~~~~~~~~~~-----~~~~~-~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 165 LAPLLWRLAL-----LGEEL-ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHhhh-----cCccc-ccChHHHHHHHHHHcCCchh
Confidence 9999988542 12222 67999999999999999965
No 16
>PRK11752 putative S-transferase; Provisional
Probab=99.96 E-value=4.8e-28 Score=192.85 Aligned_cols=178 Identities=22% Similarity=0.306 Sum_probs=131.7
Q ss_pred ChhHHHHHHHHHHc------CCCCeEEEecCCC---CchhHHhhCCCCCCceEEeC----CeeecCcHHHHHHHHHhCCC
Q 028155 20 CPFSQRALLTLEEK------KVPYKRHLINISD---KPQWFMEISPEGKVPVVKFD----DKWVADSDVIVRIIEEKYPE 86 (213)
Q Consensus 20 sp~~~~v~~~l~~~------gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~----~~~l~eS~aI~~yL~~~~~~ 86 (213)
||+|+||+++|+++ |++|+.+.+++.. .+++|+++||.|+||+|+++ +.+|+||.||++||+++++.
T Consensus 52 s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~~~~ 131 (264)
T PRK11752 52 TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA 131 (264)
T ss_pred CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHHHHHHHhcCC
Confidence 79999999999997 8999999998754 46789999999999999974 36899999999999999873
Q ss_pred CCCCCCh--HHHhhhccchHH----------HHHhh-cCCCCC----chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCc
Q 028155 87 PSLTNPP--EFASLGSKIFPS----------FVNFL-KSKDPN----DGTEQALLEELKALDEHLKTHGGPFIAGEKVTA 149 (213)
Q Consensus 87 ~~l~~~~--~~~~~~~~l~~~----------~~~~~-~~~~~~----~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~ 149 (213)
+.|.+ +++++.+++.-. +...+ ...... +....++.+.|+.||+.|+.+ +|++|+++|+
T Consensus 132 --L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~--~fl~Gd~~Tl 207 (264)
T PRK11752 132 --FLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH--EYIAGDEYTI 207 (264)
T ss_pred --cCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCccCH
Confidence 66643 344454443210 11111 111111 334456788999999999866 8999999999
Q ss_pred hhhhhhhhHHHHHHHHh-hccCCCCCccchHHHHHHHHhhcCcccccccchHH
Q 028155 150 VDLSLAPKLYHLQVALE-HFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQ 201 (213)
Q Consensus 150 AD~~l~~~l~~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 201 (213)
|||++++++.++..... ..........+|+|.+|+++|.+||++++++..+.
T Consensus 208 ADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~ 260 (264)
T PRK11752 208 ADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNR 260 (264)
T ss_pred HHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhccc
Confidence 99999998877642100 00011123679999999999999999999876553
No 17
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.3e-28 Score=174.51 Aligned_cols=181 Identities=27% Similarity=0.431 Sum_probs=146.7
Q ss_pred CccCCChhHHHHHHHHHHcCCCCeEEEecCCC----CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCCCCCC
Q 028155 15 DILGDCPFSQRALLTLEEKKVPYKRHLINISD----KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLT 90 (213)
Q Consensus 15 ~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l~ 90 (213)
.+.+.|..++|||++|..+||+|+.++|++-. ...+|.++||+++||+|++||.+|.||.||++||++.+|.+.|.
T Consensus 9 YSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~ppLL 88 (217)
T KOG0868|consen 9 YSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDPPLL 88 (217)
T ss_pred hhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCCCCC
Confidence 45677888999999999999999999998754 34579999999999999999999999999999999999999999
Q ss_pred CChH--HHhh-------hccchH----HHHHhhcCCCC---CchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhh
Q 028155 91 NPPE--FASL-------GSKIFP----SFVNFLKSKDP---NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSL 154 (213)
Q Consensus 91 ~~~~--~~~~-------~~~l~~----~~~~~~~~~~~---~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l 154 (213)
|.+. ++.. ...+.+ .+..++.++.+ .......+.+.|..||+.|....|.|.+|+.+|+||+++
T Consensus 89 P~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiADl~L 168 (217)
T KOG0868|consen 89 PKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIADLCL 168 (217)
T ss_pred CcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhhhcc
Confidence 8664 3221 112211 23444544443 244556788999999999999889999999999999999
Q ss_pred hhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHH
Q 028155 155 APKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQ 201 (213)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 201 (213)
.+.++.... ...++ +.||-+.+-.+.....|+|+.+.++.+
T Consensus 169 ~pqv~nA~r-----f~vdl-~PYPti~ri~e~l~elpaFq~ahP~nQ 209 (217)
T KOG0868|consen 169 PPQVYNANR-----FHVDL-TPYPTITRINEELAELPAFQAAHPDNQ 209 (217)
T ss_pred chhhhhhhh-----ccccC-CcCchHHHHHHHHHhCHHHHhcCCCCC
Confidence 998886642 23343 679999999999999999999887665
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.94 E-value=4.6e-26 Score=175.82 Aligned_cols=166 Identities=20% Similarity=0.297 Sum_probs=121.7
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEE-eCCeeecCcHHHHHHHHHhCCCCCCCCChHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPEF 95 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~~l~~~~~~ 95 (213)
+..||+|+|++++|+++||+|+.+.++...... -.+.||.|+||+|+ ++|..|+||.+|++||+++++.+.+.+ ..+
T Consensus 6 ~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~~-~~~ 83 (210)
T PRK10387 6 YDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLTG-KRS 83 (210)
T ss_pred CCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCCC-ccc
Confidence 456899999999999999999998886544322 25789999999995 789999999999999999998755542 233
Q ss_pred HhhhccchHH-------HHHhhcCC-----------------------------CCCchHHHHHHHHHHHHHHHhhhCCC
Q 028155 96 ASLGSKIFPS-------FVNFLKSK-----------------------------DPNDGTEQALLEELKALDEHLKTHGG 139 (213)
Q Consensus 96 ~~~~~~l~~~-------~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~le~~L~~~~~ 139 (213)
..+.+++... +...+... ...++..+.+.+.|+.||+.|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~-- 160 (210)
T PRK10387 84 PAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDPLIV-K-- 160 (210)
T ss_pred HHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHHHhc-C--
Confidence 3333332211 11101000 0012445678889999999986 3
Q ss_pred CcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccc
Q 028155 140 PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQ 194 (213)
Q Consensus 140 ~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 194 (213)
+|++|+++|+||+++++++.++... .+. ..+|+|.+|++||.+||++.
T Consensus 161 ~~l~G~~~s~ADi~l~~~l~~~~~~----~~~---~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 161 PNAVNGELSTDDIHLFPILRNLTLV----KGI---EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred ccccCCCCCHHHHHHHHHHhcceee----cCC---CCCHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999887532 122 23699999999999999863
No 19
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-25 Score=174.78 Aligned_cols=183 Identities=20% Similarity=0.245 Sum_probs=141.9
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecCC---CCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCC-CCC-CCCC
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP-EPS-LTNP 92 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~-~~~-l~~~ 92 (213)
+.||.|+++.+++.++|++++.+.++.. +.+++|+++||.|+||+|+++|..++||.||+.||.++++ .++ ++|.
T Consensus 9 ~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~~~l~p~ 88 (226)
T KOG0867|consen 9 LGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLGGILLPK 88 (226)
T ss_pred CCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCCcccCCc
Confidence 3467799999999999999999988765 4789999999999999999999999999999999999997 333 6664
Q ss_pred hH--HHhhhccchHHH-------------HH-hhcC---CCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhh
Q 028155 93 PE--FASLGSKIFPSF-------------VN-FLKS---KDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLS 153 (213)
Q Consensus 93 ~~--~~~~~~~l~~~~-------------~~-~~~~---~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~ 153 (213)
+. ++.+.+++.-.. .+ ..+. .........++.+.++.+|..|.++ .|++|+++|+||+.
T Consensus 89 ~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~--~yl~g~~~tlADl~ 166 (226)
T KOG0867|consen 89 DLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQ--VYLAGDQLTLADLS 166 (226)
T ss_pred CHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccC--CcccCCcccHHHHH
Confidence 43 455555543211 11 1111 1111677889999999999999987 99999999999999
Q ss_pred hhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHHHHHH
Q 028155 154 LAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIA 205 (213)
Q Consensus 154 l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~ 205 (213)
+.+.+..+.. ... +.....++|++.+|++++.++|++++..........
T Consensus 167 ~~~~~~~~~~--~~~-~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~~~~~~ 215 (226)
T KOG0867|consen 167 LASTLSQFQG--KFA-TEKDFEKYPKVARWYERIQKRPAYEEANEKGAAPLK 215 (226)
T ss_pred HhhHHHHHhH--hhh-hhhhhhhChHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 9999987741 111 223457899999999999999998887665544443
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.93 E-value=1.2e-24 Score=167.86 Aligned_cols=165 Identities=19% Similarity=0.291 Sum_probs=119.2
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEE-eCCeeecCcHHHHHHHHHhCCCCCCCCChHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPEF 95 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~~l~~~~~~ 95 (213)
...||||+|||++|.++|++|+.+.+...... ...+.||.|+||+|+ ++|..|+||.+|++||+++++.+.+.+ ..+
T Consensus 5 ~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~~-~~~ 82 (209)
T TIGR02182 5 YDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLTG-KVS 82 (209)
T ss_pred CCCCChHHHHHHHHHHcCCCeEEEECCCCcch-hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCccCCC-CCh
Confidence 56799999999999999999999877544332 347899999999998 788999999999999999998654433 222
Q ss_pred Hhhhccc-------hHHHHHhhcC------------------C-----------CCCchHHHHHHHHHHHHHHHhhhCCC
Q 028155 96 ASLGSKI-------FPSFVNFLKS------------------K-----------DPNDGTEQALLEELKALDEHLKTHGG 139 (213)
Q Consensus 96 ~~~~~~l-------~~~~~~~~~~------------------~-----------~~~~~~~~~~~~~l~~le~~L~~~~~ 139 (213)
.++.+++ ...+...+.. . ...++..+.+.+.|+.+|++|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-- 160 (209)
T TIGR02182 83 PEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKLIDGP-- 160 (209)
T ss_pred HHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHHHhCc--
Confidence 2222222 1111111100 0 001345577888999999999876
Q ss_pred CcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccch-HHHHHHHHhhcCcccc
Q 028155 140 PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLA-HVHGYTKKLFALESFQ 194 (213)
Q Consensus 140 ~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p-~l~~w~~~~~~~p~~~ 194 (213)
+|++| ++|+||+++++++.++... .+. .+| +|.+|++||++++++.
T Consensus 161 ~~l~g-~~TiADi~l~~~l~~~~~~----~~~----~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 161 NAVNG-ELSEDDILVFPLLRNLTLV----AGI----NWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred cccCC-CCCHHHHHHHHHhcCeeee----cCC----CCChHHHHHHHHHHHHhCCC
Confidence 99965 6999999999998876421 111 256 9999999999998763
No 21
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.91 E-value=9.7e-24 Score=139.76 Aligned_cols=85 Identities=26% Similarity=0.525 Sum_probs=80.4
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
.+|||+|+++.+++ +..||||+|+|++|+++||+|+.+.+++.+++++|+++||.|++|+|+++|..|+||.+|++||+
T Consensus 5 ~~el~vka~~~~~~-~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 5 EIELFVKASSDGES-IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred cEEEEEEeccCCCC-CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 48999999998756 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCC
Q 028155 82 EKYPEP 87 (213)
Q Consensus 82 ~~~~~~ 87 (213)
+++..+
T Consensus 84 e~~~~~ 89 (91)
T cd03061 84 ETLCPP 89 (91)
T ss_pred HHccCC
Confidence 998754
No 22
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-23 Score=156.48 Aligned_cols=175 Identities=18% Similarity=0.243 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCCCCCCCChHHHhhh
Q 028155 21 PFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASLG 99 (213)
Q Consensus 21 p~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~~l~~~~~~~~~~ 99 (213)
.++..+|++++++|++||++.++..+ +.. .....|+|++|+|..||..|.+|.||++||+++++-.+-. +.+.++++
T Consensus 13 G~ae~iR~lf~~a~v~fEd~r~~~~~~w~~-~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl~Gkt-~~E~a~vD 90 (206)
T KOG1695|consen 13 GLAEPIRLLFAYAGVSFEDKRITMEDAWEE-LKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFGLAGKT-EEEEAWVD 90 (206)
T ss_pred hhHHHHHHHHHhcCCCcceeeeccccchhh-hcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhCcCCCC-HHHHHHHH
Confidence 46899999999999999999999887 433 3445899999999999999999999999999999944333 22333322
Q ss_pred ------ccchHHHHHhhcC----CCCCc----hHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHH
Q 028155 100 ------SKIFPSFVNFLKS----KDPND----GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVAL 165 (213)
Q Consensus 100 ------~~l~~~~~~~~~~----~~~~~----~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~ 165 (213)
.+++..+...... +...+ .......+.+..+++.|..+++.|++|+++|+||+.++..+..+...
T Consensus 91 ~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~- 169 (206)
T KOG1695|consen 91 MIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEEL- 169 (206)
T ss_pred HHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHh-
Confidence 2333332222211 11111 23446677899999999988778999999999999999988877642
Q ss_pred hhccCCCCCccchHHHHHHHHhhcCcccccccchHH
Q 028155 166 EHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQ 201 (213)
Q Consensus 166 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 201 (213)
........+|+|+++..++.++|.++++++++.
T Consensus 170 ---~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 170 ---LDPSALDHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred ---cCchhhccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 122344667999999999999999999987653
No 23
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.89 E-value=3.9e-23 Score=157.15 Aligned_cols=190 Identities=20% Similarity=0.321 Sum_probs=137.4
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCC-CCCCCC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE-PSLTNP 92 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~-~~l~~~ 92 (213)
++.|-.++|||++++++||.|+...|++.+ +++||+.+||.|.||||+++..+|.|+.-|++|+++.+-. ..+-|.
T Consensus 32 hpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger~l~pe 111 (325)
T KOG4420|consen 32 HPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGERVLMPE 111 (325)
T ss_pred cCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccccccccc
Confidence 445666899999999999999999998865 6799999999999999999999999999999999997753 333332
Q ss_pred hH-----HHh----------h-----hccchH---------HHH--------------HhhcCCCCC-------------
Q 028155 93 PE-----FAS----------L-----GSKIFP---------SFV--------------NFLKSKDPN------------- 116 (213)
Q Consensus 93 ~~-----~~~----------~-----~~~l~~---------~~~--------------~~~~~~~~~------------- 116 (213)
.. +.. + .+.+++ .+. .......+.
T Consensus 112 ~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~akqkkl~ 191 (325)
T KOG4420|consen 112 VGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAKQKKLM 191 (325)
T ss_pred ccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Confidence 11 100 0 000100 000 000000000
Q ss_pred ------------chHHHHHHHHHHHHHHHhhhC--CCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHH
Q 028155 117 ------------DGTEQALLEELKALDEHLKTH--GGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHG 182 (213)
Q Consensus 117 ------------~~~~~~~~~~l~~le~~L~~~--~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~ 182 (213)
......+...|+.+|..|..+ -.+|++|+.+|+||+.+.++|+++....-.-..|. ..+.|||..
T Consensus 192 ~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~-~gsrpnle~ 270 (325)
T KOG4420|consen 192 AKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWE-DGSRPNLES 270 (325)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcc-cCCCccHHH
Confidence 233456677788888888874 14899999999999999999999975421111222 357899999
Q ss_pred HHHHhhcCcccccccchHHHHHHhh
Q 028155 183 YTKKLFALESFQKTKAEKQYVIAGW 207 (213)
Q Consensus 183 w~~~~~~~p~~~~~~~~~~~~~~~~ 207 (213)
|+.+++.|++|++++.+...++.-+
T Consensus 271 Yf~rvrrR~sf~kvlg~~fnilr~~ 295 (325)
T KOG4420|consen 271 YFERVRRRFSFRKVLGDIFNILRFR 295 (325)
T ss_pred HHHHHHhhhHHHHhhhhHHHHHHHH
Confidence 9999999999999999988887633
No 24
>PLN02907 glutamate-tRNA ligase
Probab=99.85 E-value=2.1e-20 Score=165.32 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=118.7
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEe-CCeeecCcHHHHHH
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRI 79 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~-~~~~l~eS~aI~~y 79 (213)
|+++||+.+++. +.++.++|++.|++|+.+. .+|.|+||+|++ +|..|+||.||++|
T Consensus 1 ~~~kLy~~~~S~----------~~~v~~~L~~lgv~~e~~~------------~~p~GkVPvLv~ddG~~L~ES~AIl~Y 58 (722)
T PLN02907 1 MEAKLSFPPDSP----------PLAVIAAAKVAGVPLTIDP------------SLKSGSAPTLLFSSGEKLTGTNVLLRY 58 (722)
T ss_pred CeEEEEECCCCC----------hHHHHHHHHHcCCCcEEee------------cCCCCCCcEEEECCCCEEECHHHHHHH
Confidence 788888655442 3458899999999998864 258999999995 88999999999999
Q ss_pred HHHhCCCCCCCCCh--HHHhhhccchHHHHHhhcCCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhh
Q 028155 80 IEEKYPEPSLTNPP--EFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPK 157 (213)
Q Consensus 80 L~~~~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~ 157 (213)
|++.++...+.|.+ +++++.+|+..... .. ....+.+.++.||++|+.+ +|++|+++|+|||++++.
T Consensus 59 La~~~p~~~L~p~d~~erAqV~qWL~~~~~--~~-------~~~~l~~~L~~LE~~L~~r--tYLvGd~lTLADIaL~~~ 127 (722)
T PLN02907 59 IARSASLPGFYGQDAFESSQVDEWLDYAPT--FS-------SGSEFENACEYVDGYLASR--TFLVGYSLTIADIAIWSG 127 (722)
T ss_pred HHHhCCCcCCCCCCHHHHHHHHHHHHHHhh--cc-------cHHHHHHHHHHHHHHhccC--CeecCCCCCHHHHHHHHH
Confidence 99999877787754 35566666543211 10 0135677899999999877 999999999999999988
Q ss_pred HHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcc
Q 028155 158 LYHLQVALEHFKQWTVPESLAHVHGYTKKLFALES 192 (213)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 192 (213)
+...... .........+|+|.+|+++|.++|+
T Consensus 128 L~~~~~~---~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 128 LAGSGQR---WESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHhhhhh---hhcccccccCHHHHHHHHHHHhCCC
Confidence 7654111 1112234679999999999999999
No 25
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.78 E-value=7.5e-19 Score=113.60 Aligned_cols=71 Identities=38% Similarity=0.708 Sum_probs=67.4
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCCC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEP 87 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~~ 87 (213)
+.+||||+|+|++|+++||+|+.+.++..++++++.+.||.|+||+|+++|..++||.+|++||+++++..
T Consensus 4 ~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 4 FPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp ETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred cCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 56899999999999999999999999988888999999999999999999999999999999999999853
No 26
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.76 E-value=2.9e-18 Score=113.28 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=70.7
Q ss_pred eEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCc---hhHHhhCCCCCCceEEeC-CeeecCcHHHHH
Q 028155 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKP---QWFMEISPEGKVPVVKFD-DKWVADSDVIVR 78 (213)
Q Consensus 3 ~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~---~~~~~~~p~g~vP~L~~~-~~~l~eS~aI~~ 78 (213)
+|||.+++..+ ..++||||+|+|++|.++|++|+.+.++..+.. .++ +.||.|++|+|+++ |..++||.+|++
T Consensus 1 ~~~~~~~~~~~--~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~ 77 (84)
T cd03038 1 ITLYDLAGKDP--VRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAE 77 (84)
T ss_pred CeeEeccCCCC--CCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHH
Confidence 58999998888 589999999999999999999999999876432 334 78999999999998 899999999999
Q ss_pred HHHHhCC
Q 028155 79 IIEEKYP 85 (213)
Q Consensus 79 yL~~~~~ 85 (213)
||+++++
T Consensus 78 yL~~~~p 84 (84)
T cd03038 78 YLEEAYP 84 (84)
T ss_pred HHHHhCc
Confidence 9999875
No 27
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.75 E-value=1.1e-17 Score=119.01 Aligned_cols=113 Identities=27% Similarity=0.539 Sum_probs=94.8
Q ss_pred HhhhccchHHHHHhhcCCCCC--chHHHHHHHHHHHHHHHhhh--------------CCCCcccCCCCCchhhhhhhhHH
Q 028155 96 ASLGSKIFPSFVNFLKSKDPN--DGTEQALLEELKALDEHLKT--------------HGGPFIAGEKVTAVDLSLAPKLY 159 (213)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~le~~L~~--------------~~~~fl~G~~~t~AD~~l~~~l~ 159 (213)
..+.+.+++.+..++.++.+. +...+.+.+.|+.||.+|++ .+++|++|+++|+|||++++.+.
T Consensus 5 ~~~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~ 84 (134)
T cd03198 5 NTAGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLH 84 (134)
T ss_pred hhhHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHH
Confidence 456778999999999886444 77788999999999999986 23589999999999999999998
Q ss_pred HHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHHHHHHhhc
Q 028155 160 HLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWV 208 (213)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 208 (213)
++........++.+...+|+|.+|++++.+||+|++++...++++..|+
T Consensus 85 ~~~~~~~~~~g~~i~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 85 IVKVVAKKYRNFEIPADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHHHHHHhhcCCCccccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 7764322223555567899999999999999999999999999999996
No 28
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.75 E-value=1.6e-17 Score=117.09 Aligned_cols=118 Identities=72% Similarity=1.155 Sum_probs=99.0
Q ss_pred ChHHHhhhccchHHHHHhhcCCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCC
Q 028155 92 PPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQW 171 (213)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~ 171 (213)
+.+.+.+...++..+..++.++...++..+.+.+.|+.||+.|++. ++|++|+++|+|||++++++.++........++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~-~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~ 82 (121)
T cd03201 4 PPEKASVGSKIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKEN-GPFINGEKISAVDLSLAPKLYHLEIALGHYKNW 82 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCC
Confidence 3456778888999999998887766777788999999999999853 489999999999999999888776433333355
Q ss_pred CCCccchHHHHHHHHhhcCcccccccchHHHHHHhhccc
Q 028155 172 TVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPK 210 (213)
Q Consensus 172 ~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~ 210 (213)
.+...+|+|.+|+++|.+||+|+++++..+.++..|..|
T Consensus 83 ~~~~~~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~~~~ 121 (121)
T cd03201 83 SVPESLTSVKSYMKALFSRESFVKTKAEKEDVIAGWAPK 121 (121)
T ss_pred CCcccchHHHHHHHHHHCCchhhhcCCCHHHHHHHhccC
Confidence 455789999999999999999999999999999999865
No 29
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.74 E-value=1.3e-17 Score=107.16 Aligned_cols=68 Identities=25% Similarity=0.381 Sum_probs=63.5
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~ 84 (213)
.+.||+|++++++|+++|++|+.+.++..+.+++|++.||.|++|+|+++|..++||.+|++||++++
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 6 GPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 45699999999999999999999999988888899999999999999999999999999999999864
No 30
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.73 E-value=2.2e-17 Score=105.22 Aligned_cols=65 Identities=35% Similarity=0.652 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecC----CCCchhHHhhCCCCCCceEEe-CCeeecCcHHHHHHHHHh
Q 028155 19 DCPFSQRALLTLEEKKVPYKRHLINI----SDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEEK 83 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~g~vP~L~~-~~~~l~eS~aI~~yL~~~ 83 (213)
+|||++|++++|+++|++++...+.. .+.+++|.+.||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988844 234578999999999999997 889999999999999873
No 31
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.73 E-value=2.1e-17 Score=105.64 Aligned_cols=65 Identities=25% Similarity=0.447 Sum_probs=60.5
Q ss_pred ccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeC-CeeecCcHHHHHHH
Q 028155 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRII 80 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~-~~~l~eS~aI~~yL 80 (213)
++++||||+|++++|+++|++|+.+.++..+++++|++.||.|++|+|+++ |..++||.+|++|+
T Consensus 5 ~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 5 SFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred ecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 456799999999999999999999999988878899999999999999985 89999999999996
No 32
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.72 E-value=2.5e-17 Score=105.75 Aligned_cols=64 Identities=27% Similarity=0.507 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecCC---CCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
..||+|++++++|+++|++|+.+.++.. ..+++|.++||.|+||+|+++|..++||.+|++||+
T Consensus 7 ~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 7 TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 3578999999999999999999998874 356789999999999999999999999999999985
No 33
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.72 E-value=4.9e-17 Score=105.05 Aligned_cols=74 Identities=24% Similarity=0.461 Sum_probs=65.9
Q ss_pred eEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 3 ~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
++||..+...+ ..+.||+|+|++++|+++|++|+.+.++.. +.||.|++|+|+++|..++||.+|++||++
T Consensus 2 ~~L~~~~~~~~--~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-------~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 2 ITLYQFPRAFG--VPSLSPFCLKVETFLRMAGIPYENKFGGLA-------KRSPKGKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred EEEEecCCCCC--CCCCCHHHHHHHHHHHHCCCCcEEeecCcc-------cCCCCCCCCEEEECCEEEcCHHHHHHHHHH
Confidence 68998877666 667899999999999999999999877642 578999999999999999999999999999
Q ss_pred hCC
Q 028155 83 KYP 85 (213)
Q Consensus 83 ~~~ 85 (213)
+++
T Consensus 73 ~~~ 75 (75)
T cd03080 73 KYG 75 (75)
T ss_pred HcC
Confidence 875
No 34
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.71 E-value=4.6e-17 Score=104.90 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=62.4
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCC-CCCceEEeCCeeecCcHHHHHHHHHhC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPE-GKVPVVKFDDKWVADSDVIVRIIEEKY 84 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-g~vP~L~~~~~~l~eS~aI~~yL~~~~ 84 (213)
.+.||+|++++++|+++|++|+.+.++...++++|.+.||. |++|+|+++|..++||.+|++||++.+
T Consensus 6 ~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 6 AWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 44689999999999999999999999887778889999996 999999999999999999999999864
No 35
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.71 E-value=1.2e-16 Score=122.63 Aligned_cols=177 Identities=17% Similarity=0.284 Sum_probs=125.4
Q ss_pred eEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 3 ~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
+-||.++-... .-..||||.++...|+..+||||.+...+. ..++.|++|.++.||+.+.||..|...|.+
T Consensus 46 VYLyQF~R~~~--~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~G~lPFIELNGe~iaDS~~I~~~L~~ 116 (281)
T KOG4244|consen 46 VYLYQFPRTKT--CPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRNGTLPFIELNGEHIADSDLIEDRLRK 116 (281)
T ss_pred EEEEeccccCC--CCCCChHHHHHHHHHHHhCCCceeccccce-------eeccCCCcceEEeCCeeccccHHHHHHHHH
Confidence 45777766544 566899999999999999999999976543 245679999999999999999999999999
Q ss_pred hCCCCCCCCChHHHhhh--c-----cc----------------------------hHHHHHhh-------------cCC-
Q 028155 83 KYPEPSLTNPPEFASLG--S-----KI----------------------------FPSFVNFL-------------KSK- 113 (213)
Q Consensus 83 ~~~~~~l~~~~~~~~~~--~-----~l----------------------------~~~~~~~~-------------~~~- 113 (213)
.++-+...++.++++.. . .+ ...+.+++ .+.
T Consensus 117 hf~~~~~L~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~I 196 (281)
T KOG4244|consen 117 HFKIPDDLSAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAI 196 (281)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99866534444432210 0 00 00001111 001
Q ss_pred --CCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcC
Q 028155 114 --DPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFAL 190 (213)
Q Consensus 114 --~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 190 (213)
=..++..+-+.+.|..++..|++. .|+.|+++|-+|+.+|+.|..+.+-...--..-+..++|||.+|++|+++.
T Consensus 197 G~f~~~Ei~ell~rDlr~i~~~Lg~K--kflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 197 GDFESAEIDELLHRDLRAISDYLGDK--KFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRKE 273 (281)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHhCCC--ccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHHH
Confidence 011446667788899999999987 999999999999999999988765100000001346899999999999864
No 36
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.69 E-value=9.4e-17 Score=104.27 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=59.5
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEe--CCeeecCcHHHHHHHHHhC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKF--DDKWVADSDVIVRIIEEKY 84 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~--~~~~l~eS~aI~~yL~~~~ 84 (213)
.+.||||+|++++|.++||+|+.+.++... ..+++.+.||.|++|+|++ +|..++||.+|++||++++
T Consensus 7 ~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 7 FEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 456999999999999999999999886543 3568999999999999997 4689999999999999864
No 37
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.69 E-value=9.2e-17 Score=103.22 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
|++|+++|++|+++|++|+.+.++...+.+++.++||.|++|+|+++|..++||.+|++||++
T Consensus 10 ~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 10 RGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhc
Confidence 689999999999999999999998765666788999999999999999999999999999976
No 38
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.69 E-value=1.3e-16 Score=102.72 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=59.9
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
.+.||+|++++++|+++|++|+.+.+++.. ..++|.+.||.|++|+|+++|..++||.||++||++
T Consensus 6 ~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 6 LPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 456899999999999999999999998754 458899999999999999999999999999999964
No 39
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.68 E-value=2.2e-16 Score=102.21 Aligned_cols=67 Identities=28% Similarity=0.396 Sum_probs=60.2
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCC---CCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHh
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~ 83 (213)
.+.||+|+++|++|+++|++|+.+.++.. ..+++|.+.||.|++|+|+++|..++||.+|++||+++
T Consensus 7 ~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 7 AAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 34589999999999999999999998875 34678999999999999999999999999999999863
No 40
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.67 E-value=3.4e-16 Score=101.33 Aligned_cols=68 Identities=26% Similarity=0.346 Sum_probs=60.9
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~ 84 (213)
.+.|++|++++++|+++|++|+.+.++..+ +.++|.+.||.|++|+|+++|..++||.||++||++++
T Consensus 6 ~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 6 DLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 345889999999999999999999998754 35689999999999999999999999999999999864
No 41
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.67 E-value=3.4e-16 Score=104.46 Aligned_cols=65 Identities=42% Similarity=0.780 Sum_probs=60.1
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeC-CeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~-~~~l~eS~aI~~yL~ 81 (213)
++.||||++++++|+++|++|+.+.++....++++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 24 ~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 24 MRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 55689999999999999999999999987777789999999999999986 899999999999985
No 42
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.67 E-value=3.9e-16 Score=100.03 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=64.4
Q ss_pred eEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 3 ~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
++||.++...+ ..++||+|++++++|+++|++|+.+.++... .||.|++|+|+++|..++||.+|++||++
T Consensus 1 ~~L~~~~~~~~--~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 1 LELYQWGRAFG--LPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CEEEEeCCCCC--CCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 47999888666 7789999999999999999999999887532 68999999999999999999999999986
Q ss_pred h
Q 028155 83 K 83 (213)
Q Consensus 83 ~ 83 (213)
+
T Consensus 72 ~ 72 (72)
T cd03054 72 K 72 (72)
T ss_pred C
Confidence 4
No 43
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.67 E-value=4.7e-16 Score=101.93 Aligned_cols=65 Identities=32% Similarity=0.538 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHcCCCCeEEEecCC---CCchhHHhhCCCCCCceEEeC---CeeecCcHHHHHHHHHhCC
Q 028155 21 PFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFD---DKWVADSDVIVRIIEEKYP 85 (213)
Q Consensus 21 p~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~g~vP~L~~~---~~~l~eS~aI~~yL~~~~~ 85 (213)
|+|++++++|+++|++|+.+.+++. .++++|.+.||.|++|+|+++ |..|+||.+|++||+++++
T Consensus 10 ~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 10 PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 6999999999999999999999864 356889999999999999986 8999999999999999886
No 44
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=5e-16 Score=99.75 Aligned_cols=66 Identities=27% Similarity=0.357 Sum_probs=59.9
Q ss_pred ccCCChhHHHHHHHHHHcCCCCeEEEecCCC--CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
....||++++++++|+++|++|+.+.++... ..++|.++||.|++|+|+++|..|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 3567899999999999999999999998764 45789999999999999999999999999999984
No 45
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.65 E-value=5.1e-16 Score=100.29 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=59.8
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCC--CCchhHHhhCCCCCCceEEe-CCeeecCcHHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINIS--DKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIEE 82 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~g~vP~L~~-~~~~l~eS~aI~~yL~~ 82 (213)
++.||++++++++|+++|++|+.+.++.. ..+++|+++||.|++|+|++ +|..|+||.||++||++
T Consensus 6 ~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 6 YPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 44589999999999999999999999876 36788999999999999997 58999999999999976
No 46
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.65 E-value=6.7e-16 Score=99.92 Aligned_cols=61 Identities=31% Similarity=0.465 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCC-CCCceEEeC-CeeecCcHHHHHHHHH
Q 028155 22 FSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPE-GKVPVVKFD-DKWVADSDVIVRIIEE 82 (213)
Q Consensus 22 ~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~-g~vP~L~~~-~~~l~eS~aI~~yL~~ 82 (213)
++.++|++|+++|++|+.+.+++.. ++++|.+.||. |++|+|+++ |..++||.||++||++
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 6899999999999999999999854 34889999999 999999998 9999999999999985
No 47
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=6.6e-16 Score=99.03 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=59.0
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
++.||+|++++++|+++|++|+.+.++... .+++|.+.||.|++|+|+++|..++||.+|++||+
T Consensus 6 ~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 6 FPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 456899999999999999999999998643 56789999999999999999999999999999984
No 48
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.64 E-value=1.3e-15 Score=98.52 Aligned_cols=65 Identities=35% Similarity=0.496 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHcCCCCeEEEecCC---CCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCC
Q 028155 21 PFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (213)
Q Consensus 21 p~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~ 85 (213)
+++++++++|+++|++|+.+.++.. .+.++|.+.||.+++|+|+++|..++||.+|++||+++++
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 3688999999999999999999874 4568899999999999999999999999999999999875
No 49
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.63 E-value=3.4e-15 Score=115.34 Aligned_cols=167 Identities=22% Similarity=0.323 Sum_probs=113.9
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHh-------------
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK------------- 83 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~------------- 83 (213)
+.+||||+|||.+|.+-||+|+.+.|+...+.+ .+.+...+||+|...|+.+.||.+|+.-|+..
T Consensus 96 yetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~l~eiiq 173 (370)
T KOG3029|consen 96 YETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQDLGEIIQ 173 (370)
T ss_pred eccCchHHHHHHHHhhcCCceEEEEecchhhhh--ccccccccccEEEeccceechhHHHHHHHHHHhccCCCCHHHHHH
Confidence 457999999999999999999999998876544 34456789999998787799999998877443
Q ss_pred -CCCCCCCCC-----------------------------hH---HHhhhccch---------------------------
Q 028155 84 -YPEPSLTNP-----------------------------PE---FASLGSKIF--------------------------- 103 (213)
Q Consensus 84 -~~~~~l~~~-----------------------------~~---~~~~~~~l~--------------------------- 103 (213)
||..+.... ++ +.+++.++.
T Consensus 174 ~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf~q~G~w 253 (370)
T KOG3029|consen 174 MYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWFSQAGEW 253 (370)
T ss_pred hccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHHHHcCCc
Confidence 331000000 00 011111110
Q ss_pred ----HH----------------HHHhhcCCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHH
Q 028155 104 ----PS----------------FVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQV 163 (213)
Q Consensus 104 ----~~----------------~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~ 163 (213)
+. +...+..+....+.++.+.+.++.+-..|+.+ .+|+.|++|++||+.+|++|..+..
T Consensus 254 ~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgkn-r~flGG~kPnLaDLsvfGvl~sm~g 332 (370)
T KOG3029|consen 254 DVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKN-RPFLGGKKPNLADLSVFGVLRSMEG 332 (370)
T ss_pred cccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCC-CCccCCCCCchhhhhhhhhhhHhhh
Confidence 00 01122333333457778888888888888754 7999999999999999999998875
Q ss_pred HHhhccCCCCCccchHHHHHHHHhhcC
Q 028155 164 ALEHFKQWTVPESLAHVHGYTKKLFAL 190 (213)
Q Consensus 164 ~~~~~~~~~~~~~~p~l~~w~~~~~~~ 190 (213)
... + ...-.+-++..|+.+|++.
T Consensus 333 c~a-f---kd~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 333 CQA-F---KDCLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhH-H---HHHHhcchHHHHHHHHHHH
Confidence 421 1 2223467899999999753
No 50
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.63 E-value=1.2e-15 Score=98.05 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=59.2
Q ss_pred cCCChhHHHHHHHHHH--cCCCCeEEEecCCCCchhHHhhCCCCCCceEEe-CCeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEE--KKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~-~~~~l~eS~aI~~yL~ 81 (213)
++.||+|+++|++|++ +|++|+.+.++...+.++|++.||.|++|+|++ +|..++||.+|++||+
T Consensus 6 ~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 6 SPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 4568999999999999 899999999987777889999999999999985 7899999999999985
No 51
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.62 E-value=1.2e-15 Score=98.02 Aligned_cols=65 Identities=25% Similarity=0.430 Sum_probs=58.2
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEe-CCeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~-~~~~l~eS~aI~~yL~ 81 (213)
.++||+|+++|++|.++|++|+.+.++... ..++|.+.||.|++|+|++ +|..++||.+|++||+
T Consensus 6 ~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 6 SPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 457999999999999999999999998643 4578999999999999995 7789999999999985
No 52
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.62 E-value=1.1e-15 Score=97.97 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=56.7
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecCCCCc-hhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 19 DCPFSQRALLTLEEKKVPYKRHLINISDKP-QWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
.|++|+++|++|+++|++|+.+.++..... .+|.+.||.|++|+|+++|..++||.+|++||++
T Consensus 8 ~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 8 IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 368999999999999999999999875432 3488899999999999999999999999999974
No 53
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.62 E-value=2.2e-15 Score=96.78 Aligned_cols=64 Identities=27% Similarity=0.379 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecCC---CCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
+.||++++++++|+++|++|+.+.++.. ...++|.+.||.|++|+|+++|..|+||.+|++||+
T Consensus 7 ~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 7 RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 4589999999999999999999988753 245789999999999999999999999999999984
No 54
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.62 E-value=2e-15 Score=96.45 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=55.9
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeC-CeeecCcHHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIEE 82 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~-~~~l~eS~aI~~yL~~ 82 (213)
++.||||+|+|++|.++|++|+.+.++.... ....+.+|.+++|+|+++ |..++||.+|++||++
T Consensus 6 ~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~-~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 6 YEHCPFCVKARMIAGLKNIPVEQIILQNDDE-ATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred cCCCcHhHHHHHHHHHcCCCeEEEECCCCch-HHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5679999999999999999999998875433 334678999999999975 8999999999999974
No 55
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.60 E-value=3.4e-15 Score=95.76 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=58.6
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCC---CCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINIS---DKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
++.|++|+++|++|+++|++|+.+.++.. .+.++|.+.||.|++|+|+++|..++||.||++||+
T Consensus 6 ~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 6 YFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 44578999999999999999999999874 356789999999999999999999999999999984
No 56
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.60 E-value=4.6e-15 Score=96.23 Aligned_cols=64 Identities=23% Similarity=0.476 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeC-CeeecCcHHHHHHHHHhCC
Q 028155 22 FSQRALLTLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFD-DKWVADSDVIVRIIEEKYP 85 (213)
Q Consensus 22 ~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~-~~~l~eS~aI~~yL~~~~~ 85 (213)
.+++++++|+++|++|+.+.++..+ .+++|.+.||.|++|+|+++ |..++||.+|++||+++++
T Consensus 10 ~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 10 CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 4789999999999999999998754 46889999999999999986 8999999999999999875
No 57
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.57 E-value=7.8e-15 Score=95.17 Aligned_cols=66 Identities=23% Similarity=0.412 Sum_probs=55.9
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeC----CeeecCcHHHHHHHHHhCC
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFD----DKWVADSDVIVRIIEEKYP 85 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~----~~~l~eS~aI~~yL~~~~~ 85 (213)
+.||||++++++|.++|++|+.+.++....+ + ++.||.+++|+|+++ |..|+||.+|++||++..+
T Consensus 8 ~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~-~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 8 KTCPFCCKVRAFLDYHGIPYEVVEVNPVSRK-E-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCchhHH-H-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 4589999999999999999999988654332 3 467999999999965 7899999999999998753
No 58
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.57 E-value=2.8e-14 Score=101.05 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=81.7
Q ss_pred hHHHHHhhcCCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHH
Q 028155 103 FPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHG 182 (213)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~ 182 (213)
...+...+..++..+...+.+.+.|+.||+.|++++++|++|+++|+|||++++++.++.............+.+|+|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~ 96 (124)
T cd03184 17 VSAFYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEFPLDRFPKLKK 96 (124)
T ss_pred hHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhhccccCCcccChHHHH
Confidence 33333433333334677889999999999999874469999999999999999999887643321111123478999999
Q ss_pred HHHHhhcCcccccccchHHHHHHhhcc
Q 028155 183 YTKKLFALESFQKTKAEKQYVIAGWVP 209 (213)
Q Consensus 183 w~~~~~~~p~~~~~~~~~~~~~~~~~~ 209 (213)
|+++|.++|++++++...+..++-++.
T Consensus 97 w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 97 WMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred HHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 999999999999999999888877654
No 59
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.56 E-value=1.2e-14 Score=95.41 Aligned_cols=65 Identities=20% Similarity=0.182 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHcCCCCeEEEecCCCC----chhHHh-h----CCCCCCceEEeCCeeecCcHHHHHHHHHhC
Q 028155 20 CPFSQRALLTLEEKKVPYKRHLINISDK----PQWFME-I----SPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (213)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~v~~~~~----~~~~~~-~----~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~ 84 (213)
++.|+++|++|+++|++|+.+.+++... .+++.+ . +|.|+||+|+++|..|+||.||++||++++
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~~ 82 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARKH 82 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhcC
Confidence 5678999999999999999999987541 234432 2 299999999999999999999999998764
No 60
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.7e-14 Score=101.34 Aligned_cols=166 Identities=20% Similarity=0.352 Sum_probs=114.7
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEE-eCCeeecCcHHHHHHHHHhCCCCCCCCChHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPEF 95 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~-~~~~~l~eS~aI~~yL~~~~~~~~l~~~~~~ 95 (213)
+.+||||.|+|+++-.+|||++.....-++.... ..+-...+||+|+ .+|..+.||..|++|+++..+++-+.. ..+
T Consensus 6 YdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp-~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~lt~-~~~ 83 (215)
T COG2999 6 YDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP-IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLLTG-KVR 83 (215)
T ss_pred eccChHHHHHHHHhhccCCChhhheeccCcccCh-hhhhcccccceEEccccccchhhhHHHHHHHHhcCchhhcc-CcC
Confidence 3579999999999999999999988876552211 3445578999999 689999999999999999998653332 111
Q ss_pred Hhhhcc-----------chHHHHH-------------hhcC-CCCC-----------chHHHHHHHHHHHHHHHhhhCCC
Q 028155 96 ASLGSK-----------IFPSFVN-------------FLKS-KDPN-----------DGTEQALLEELKALDEHLKTHGG 139 (213)
Q Consensus 96 ~~~~~~-----------l~~~~~~-------------~~~~-~~~~-----------~~~~~~~~~~l~~le~~L~~~~~ 139 (213)
..+..| +++.+.. ++.. ++.. ....+++...++.+++.+...
T Consensus 84 pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~~Li~~~-- 161 (215)
T COG2999 84 PAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALDKLIVGP-- 161 (215)
T ss_pred HHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHHHHhcCc--
Confidence 112222 2222221 1211 1111 445677888899998888865
Q ss_pred CcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccc
Q 028155 140 PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQ 194 (213)
Q Consensus 140 ~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 194 (213)
+=+- ..+|+-||.+|+.|.++.. ..|..++ .++..|..+|.+...+.
T Consensus 162 s~~n-~~l~~ddi~vFplLRnlt~----v~gi~wp---s~v~dy~~~msektqV~ 208 (215)
T COG2999 162 SAVN-GELSEDDILVFPLLRNLTL----VAGIQWP---SRVADYRDNMSEKTQVN 208 (215)
T ss_pred chhc-cccchhhhhhhHHhcccee----cccCCCc---HHHHHHHHHHHHhhCcc
Confidence 4233 3699999999999998753 2455553 47999999998765543
No 61
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.52 E-value=6.1e-14 Score=91.40 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhC-----CCCCCceEEeCCeeecCcHHHHHHHHHhCC
Q 028155 20 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEIS-----PEGKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (213)
Q Consensus 20 sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~ 85 (213)
|+.+++++++|+++|++|+.+.++.. +++.+.+ |.|+||+|++||..|+||.||++||+++++
T Consensus 10 ~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 10 RGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 46789999999999999999988753 2233333 589999999999999999999999999876
No 62
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.9e-14 Score=109.38 Aligned_cols=192 Identities=20% Similarity=0.359 Sum_probs=131.1
Q ss_pred CChhHHHHHHHHHHcCCCC-eEE-Ee--cCCC--C--------------------chhHHhhCCC----CCCceEEeCC-
Q 028155 19 DCPFSQRALLTLEEKKVPY-KRH-LI--NISD--K--------------------PQWFMEISPE----GKVPVVKFDD- 67 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~-~~~-~v--~~~~--~--------------------~~~~~~~~p~----g~vP~L~~~~- 67 (213)
.|||++|..++-..+|++- -.+ .| .+.. + ..-|....|. -+||+|.+..
T Consensus 59 aCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVPVLwDk~~ 138 (324)
T COG0435 59 ACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVPVLWDKKT 138 (324)
T ss_pred cCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEEEEEecCC
Confidence 6999999999999999862 111 11 1111 0 0113333443 3689999843
Q ss_pred --eeecCcHHHHHHHHHhCC-----CCCCCCChHHHh---hhccchHHHHH-hhc---C--CCCCchHHHHHHHHHHHHH
Q 028155 68 --KWVADSDVIVRIIEEKYP-----EPSLTNPPEFAS---LGSKIFPSFVN-FLK---S--KDPNDGTEQALLEELKALD 131 (213)
Q Consensus 68 --~~l~eS~aI~~yL~~~~~-----~~~l~~~~~~~~---~~~~l~~~~~~-~~~---~--~~~~~~~~~~~~~~l~~le 131 (213)
.+--||..|++-+...+. ...++|..-+.+ ...++++.+-. +++ . ++.-++.-..+-+.|+.||
T Consensus 139 ~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE 218 (324)
T COG0435 139 QTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKKLFEALDKLE 218 (324)
T ss_pred CeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccCceeeecccchHHHHHHHHHHHHHHHHHHH
Confidence 456799999999876554 245777554544 44555554422 111 1 1111555667788899999
Q ss_pred HHhhhCCCCcccCCCCCchhhhhhhhHHHHHHH-Hhhcc-CCCCCccchHHHHHHHHhhcCcccccccchHHHHHHhhcc
Q 028155 132 EHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVA-LEHFK-QWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVP 209 (213)
Q Consensus 132 ~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~-~~~~~-~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 209 (213)
..|+++ .|++|+++|.||+-+|+.|-++..+ .+++. +..-+.+||+|..|++.+-+.|+|.++. ..++++..|=+
T Consensus 219 ~~L~~~--ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~-df~hIK~hYyr 295 (324)
T COG0435 219 QILSER--RYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETV-DFDHIKLHYYR 295 (324)
T ss_pred HHhhcC--eeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCccccccc-chhHhhhhhee
Confidence 999998 9999999999999999999887632 22221 2333567999999999999999999987 88888888765
Q ss_pred ---cccC
Q 028155 210 ---KVNA 213 (213)
Q Consensus 210 ---~~~~ 213 (213)
.+||
T Consensus 296 Sh~~INP 302 (324)
T COG0435 296 SHTTINP 302 (324)
T ss_pred cccccCC
Confidence 5555
No 63
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.50 E-value=7.4e-14 Score=88.96 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=59.1
Q ss_pred EEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHh
Q 028155 4 EICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (213)
Q Consensus 4 ~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~ 83 (213)
.||.+..... .-++.+++|.+++++|+++|+||+.+... + . ...+|.|+||+|++||.+|+||.+|+.||+++
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~kv~~~L~elglpye~~~~~--~--~--~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 2 ALYQPYEEEQ-ILLPDNASCLAVQTFLKMCNLPFNVRCRA--N--A--EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred ccccCCccCe-eecCCCCCHHHHHHHHHHcCCCcEEEecC--C--c--cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 5777776655 45668999999999999999999988432 1 1 12578899999999999999999999999763
No 64
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.50 E-value=1e-13 Score=87.42 Aligned_cols=65 Identities=31% Similarity=0.484 Sum_probs=57.7
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCch-hHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQ-WFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
++.||+|++++++|+++|++|+.+.++..+... ++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 6 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 6 FPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 345999999999999999999999998765443 47889999999999999999999999999984
No 65
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.50 E-value=1.3e-13 Score=97.14 Aligned_cols=86 Identities=19% Similarity=0.394 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhh-CCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccch
Q 028155 121 QALLEELKALDEHLKT-HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAE 199 (213)
Q Consensus 121 ~~~~~~l~~le~~L~~-~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 199 (213)
+.+.+.++.||+.|+. ++++|++| ++|+|||++++++.++........+.++.+++|+|.+|+++|.++|+++++.+.
T Consensus 33 ~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~ 111 (120)
T cd03203 33 AEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQD 111 (120)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCC
Confidence 4667889999999985 12599999 999999999999987754222233555556899999999999999999999999
Q ss_pred HHHHHHhh
Q 028155 200 KQYVIAGW 207 (213)
Q Consensus 200 ~~~~~~~~ 207 (213)
.+.++.-|
T Consensus 112 ~~~~~~~~ 119 (120)
T cd03203 112 PQELLDLA 119 (120)
T ss_pred HHHHHhhh
Confidence 88887644
No 66
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.1e-13 Score=106.04 Aligned_cols=194 Identities=20% Similarity=0.372 Sum_probs=132.3
Q ss_pred CChhHHHHHHHHHHcCCC----CeEEEecCCCC------------------------------chhHHhhCCC----CCC
Q 028155 19 DCPFSQRALLTLEEKKVP----YKRHLINISDK------------------------------PQWFMEISPE----GKV 60 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~----~~~~~v~~~~~------------------------------~~~~~~~~p~----g~v 60 (213)
.|||++|..+++..+|+. +..+.--..++ ++-|...+|. -+|
T Consensus 45 aCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~Y~grfTV 124 (319)
T KOG2903|consen 45 ACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPNYTGRFTV 124 (319)
T ss_pred cCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCCCCceEEE
Confidence 599999999999999975 22222100000 0112222232 369
Q ss_pred ceEEeC---CeeecCcHHHHHHHH---HhC------CCCCCCCChHHHhh---hccchHHHHH------hhcCCCCCchH
Q 028155 61 PVVKFD---DKWVADSDVIVRIIE---EKY------PEPSLTNPPEFASL---GSKIFPSFVN------FLKSKDPNDGT 119 (213)
Q Consensus 61 P~L~~~---~~~l~eS~aI~~yL~---~~~------~~~~l~~~~~~~~~---~~~l~~~~~~------~~~~~~~~~~~ 119 (213)
|+|.|- ..+--||..|++.+. +.+ +.-+|.|++-++++ .+|+++.+-. +...++.-+..
T Consensus 125 PVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INNGVYk~GFA~~~e~Ye~~ 204 (319)
T KOG2903|consen 125 PVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINNGVYKCGFAEKQEAYEEE 204 (319)
T ss_pred EEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccCceeeeccccccchHHHH
Confidence 999973 366789999999998 332 23457776666555 4577766532 22222222666
Q ss_pred HHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHH-Hhhcc--CCCCCccchHHHHHHHHhhc-Cccccc
Q 028155 120 EQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVA-LEHFK--QWTVPESLAHVHGYTKKLFA-LESFQK 195 (213)
Q Consensus 120 ~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~-~~~~~--~~~~~~~~p~l~~w~~~~~~-~p~~~~ 195 (213)
...+-+.|+.+|+.|+++.+.|++|+++|.||+.+++.+-++..+ .+++. .-.+..+||+|..|.+.+-. .|+|..
T Consensus 205 V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~~~~~~~ 284 (319)
T KOG2903|consen 205 VNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWNIPGFSS 284 (319)
T ss_pred HHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHhhccchhh
Confidence 677888899999999998456999999999999999988777532 22221 11244589999999999987 999999
Q ss_pred ccchHHHHHHhhcc---cccC
Q 028155 196 TKAEKQYVIAGWVP---KVNA 213 (213)
Q Consensus 196 ~~~~~~~~~~~~~~---~~~~ 213 (213)
+. +.++++-.|-+ ++||
T Consensus 285 Tt-d~~hIk~~Y~~S~~~iNp 304 (319)
T KOG2903|consen 285 TT-DFNHIKLHYYRSHPRINP 304 (319)
T ss_pred cc-chhHHhhhhccccCccCc
Confidence 77 88888887766 5554
No 67
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.43 E-value=7.7e-13 Score=95.91 Aligned_cols=90 Identities=18% Similarity=0.305 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhh-c-cCCCCCccchHHHHHHHHhhcCcccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEH-F-KQWTVPESLAHVHGYTKKLFALESFQ 194 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~-~-~~~~~~~~~p~l~~w~~~~~~~p~~~ 194 (213)
+.....+.+.|+.||+.|+++ +|++|+++|+|||++++++.++...... . .+......+|+|.+|+++|.++|+++
T Consensus 36 ~~~~~~l~~~l~~LE~~L~~~--~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k 113 (142)
T cd03190 36 DEAVDELFEALDRLEELLSDR--RYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVA 113 (142)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHh
Confidence 456678899999999999866 9999999999999999998876432111 1 11222357999999999999999999
Q ss_pred cccchHHHHHHhhc
Q 028155 195 KTKAEKQYVIAGWV 208 (213)
Q Consensus 195 ~~~~~~~~~~~~~~ 208 (213)
+++...+-.+.-++
T Consensus 114 ~~~~~~~~~~~~~~ 127 (142)
T cd03190 114 ETTNFDHIKQHYYG 127 (142)
T ss_pred hhcCHHHHHHHHHh
Confidence 99986555544333
No 68
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.42 E-value=9.1e-13 Score=93.35 Aligned_cols=88 Identities=20% Similarity=0.339 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCC--CCccchHHHHHHHHhhcCcccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWT--VPESLAHVHGYTKKLFALESFQ 194 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p~~~ 194 (213)
+.....+.+.++.||+.|+.+ +|++|+++|+|||++++.+.++..... ..+.+ ..+.+|++.+|+++|.++|+++
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~ADi~l~~~~~~~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 110 (126)
T cd03185 34 EKAKEEALEALKVLEEELGGK--PFFGGDTIGYVDIALGSFLGWFRAYEE-VGGVKLLDEEKTPLLAAWAERFLELEAVK 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCCCCCcchHHHHHHHHHHHHHHHHH-HcCccccCcccCchHHHHHHHHHhccHHH
Confidence 456778899999999999865 999999999999999999988754322 12333 2367999999999999999999
Q ss_pred cccchHHHHHHhh
Q 028155 195 KTKAEKQYVIAGW 207 (213)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (213)
+++...+..++-+
T Consensus 111 ~~~~~~~~~~~~~ 123 (126)
T cd03185 111 EVLPDRDKLVEFA 123 (126)
T ss_pred HhCCCHHHHHHHH
Confidence 9999988877633
No 69
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.5e-12 Score=96.49 Aligned_cols=177 Identities=16% Similarity=0.251 Sum_probs=127.3
Q ss_pred eEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 3 ~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
.|||....... .-++...-|..|..+|+++++||.++.-+ ..+| ++|.|++|.|..|.+.+.|=..|+.+..+
T Consensus 18 atL~qp~e~eQ-iLl~d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~G~vPllr~g~~~~aef~pIV~fVea 90 (257)
T KOG3027|consen 18 ATLYQPYEAEQ-ILLPDNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEA 90 (257)
T ss_pred chhcCcccccc-cccccchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHH
Confidence 46777777666 66888889999999999999999888553 3344 67999999999999999999999999988
Q ss_pred hCCC-CCCCCChHHHhhhcc------c---------------hH----------------HHHHh-------------hc
Q 028155 83 KYPE-PSLTNPPEFASLGSK------I---------------FP----------------SFVNF-------------LK 111 (213)
Q Consensus 83 ~~~~-~~l~~~~~~~~~~~~------l---------------~~----------------~~~~~-------------~~ 111 (213)
+.-. +++...+.++.+... + ++ .+.++ -.
T Consensus 91 k~~~l~s~lsE~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W 170 (257)
T KOG3027|consen 91 KGVTLTSWLSEDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDW 170 (257)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCc
Confidence 7542 223333333322111 0 00 00000 01
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCC---CCCccchHHHHHHHHhh
Q 028155 112 SKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQW---TVPESLAHVHGYTKKLF 188 (213)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~---~~~~~~p~l~~w~~~~~ 188 (213)
+....+...+++.+.+..|+..|+.+ +||.|++||-+|..+|+.++.+.... ..+. .....|++|-++++|+.
T Consensus 171 ~~~~~DqVie~vdkc~~aLsa~L~~q--~yf~g~~P~elDAlvFGHlytilTt~--Lpn~ela~~lkkys~LlefcrrIe 246 (257)
T KOG3027|consen 171 DDKTMDQVIEQVDKCCRALSAQLGSQ--PYFTGDQPTELDALVFGHLYTILTTR--LPNMELANILKKYSNLLEFCRRIE 246 (257)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCC--CccCCCCccHHHHHHHhhhHHhhhhc--CCcHHHHHHHHHhHHHHHHHHHHH
Confidence 11223777888999999999999977 99999999999999999999876321 1111 13467999999999997
Q ss_pred cC
Q 028155 189 AL 190 (213)
Q Consensus 189 ~~ 190 (213)
++
T Consensus 247 q~ 248 (257)
T KOG3027|consen 247 QQ 248 (257)
T ss_pred HH
Confidence 63
No 70
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.40 E-value=6.2e-13 Score=94.46 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHHHHHHhhhC-CCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCccccc
Q 028155 117 DGTEQALLEELKALDEHLKTH-GGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQK 195 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~-~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~ 195 (213)
+.....+.+.|..||+.|+.+ +++|++|+++|+||+++++.+.++..... .....+|+|.+|+++|.++|++++
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~-----~~~~~~P~l~~~~~rv~~~p~v~~ 108 (126)
T cd03210 34 DDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAP-----GCLDAFPLLKAFVERLSARPKLKA 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhCh-----HhhhcChHHHHHHHHHHhCcHHHH
Confidence 345566888999999999864 46899999999999999999988753211 224679999999999999999999
Q ss_pred ccchHH
Q 028155 196 TKAEKQ 201 (213)
Q Consensus 196 ~~~~~~ 201 (213)
+++.+.
T Consensus 109 ~~~~~~ 114 (126)
T cd03210 109 YLESDA 114 (126)
T ss_pred HHhCcC
Confidence 887654
No 71
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.38 E-value=1.6e-12 Score=91.71 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=65.1
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+.....+.+.|..||+.|+++ +|++|+++|+||+++++++.++... .......+|+|.+|++++.++|+++++
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~T~aDi~l~~~~~~~~~~-----~~~~~~~~P~l~~~~~rv~~~p~vk~~ 106 (121)
T cd03209 34 PDYLAKLPDKLKLFSDFLGDR--PWFAGDKITYVDFLLYEALDQHRIF-----EPDCLDAFPNLKDFLERFEALPKISAY 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CCcCCCCccHHHHHHHHHHHHHHHh-----CccccccChHHHHHHHHHHHCHHHHHH
Confidence 344567888999999999865 8999999999999999998887532 112346899999999999999999999
Q ss_pred cchHHH
Q 028155 197 KAEKQY 202 (213)
Q Consensus 197 ~~~~~~ 202 (213)
++++..
T Consensus 107 ~~~~~~ 112 (121)
T cd03209 107 MKSDRF 112 (121)
T ss_pred HhcccC
Confidence 887643
No 72
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.36 E-value=3.5e-12 Score=85.83 Aligned_cols=68 Identities=24% Similarity=0.398 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCC-ccchHHHHHHHHhhcCc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVP-ESLAHVHGYTKKLFALE 191 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~-~~~p~l~~w~~~~~~~p 191 (213)
+.....+.+.|+.+|+.|.++ +|++|+++|+||+++++.+.++.... .... +++|+|.+|+++|.+||
T Consensus 27 ~~~~~~~~~~l~~le~~l~~~--~~l~G~~~t~ADi~~~~~~~~~~~~~-----~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 27 EEARAKVPRYLEVLEKRLKGG--PYLVGDKLTIADIALFPMLDWLERLG-----PDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--SSSSBSS-CHHHHHHHHHHHHHHHHT-----TTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CeeeccCCchhHHHHHHHHHHHHHhC-----CCcccccCHHHHHHHHHHHcCC
Confidence 456678899999999999954 99999999999999999999887542 2344 78999999999999997
No 73
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.36 E-value=2.4e-12 Score=92.73 Aligned_cols=75 Identities=16% Similarity=0.284 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccchHH
Q 028155 122 ALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQ 201 (213)
Q Consensus 122 ~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 201 (213)
.+.+.|+.||+.|+.++++|++|+++|+|||++++.+.++.... ......+|+|.+|++++.++|+++++++.+.
T Consensus 43 ~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~-----~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 43 AKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELD-----PSLLSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhc-----hhhhccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 45788999999998544589999999999999999998875321 1234689999999999999999999887544
No 74
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.36 E-value=2.8e-12 Score=89.64 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+.....+.+.|..||+.|+++ +|++|+++|+|||++++++.++.... .......++|+|.+|++++.++|+++++
T Consensus 40 ~~~~~~i~~~l~~le~~L~~~--~yl~Gd~~tlADi~l~~~l~~~~~~~---~~~~~~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 40 EEYRQQAEAFLKDLEARLQQH--SYLLGDKPSLADWAIFPFVRQFAHVD---PKWFDQSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CccCCCCccHHHHHHHHHHHHHHHhh---hcccCcccCHHHHHHHHHHHcChHHHhh
Confidence 566778999999999999976 89999999999999999887664221 1111247899999999999999999986
Q ss_pred c
Q 028155 197 K 197 (213)
Q Consensus 197 ~ 197 (213)
+
T Consensus 115 ~ 115 (115)
T cd03196 115 M 115 (115)
T ss_pred C
Confidence 4
No 75
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.35 E-value=3.6e-12 Score=87.73 Aligned_cols=73 Identities=30% Similarity=0.516 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+.....+.+.|..||+.|+.+ +|++|+++|+|||++++.+.++.. .+.++...+|+|.+|++++.+||+++++
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~~~~~~~~~~~-----~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 34 EKARKELRESLLALAPVFAHK--PYFMSEEFSLVDCALAPLLWRLPA-----LGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CcccCCCCcHHHHHHHHHHHHHHH-----cCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 456678899999999999865 999999999999999998755431 2434445799999999999999999875
No 76
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.33 E-value=2.5e-12 Score=87.96 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+....++.+.++.||+.|+++ +|++|+++|+|||++++++.++... + ....+|+|++|++++.++|+++++
T Consensus 29 ~~~~~~~~~~l~~le~~l~~~--~~l~g~~~t~aDi~~~~~~~~~~~~-----~--~~~~~p~l~~w~~~~~~~p~~~~~ 99 (103)
T cd03207 29 MAGFGSYDDVLAALEQALAKG--PYLLGERFTAADVLVGSPLGWGLQF-----G--LLPERPAFDAYIARITDRPAFQRA 99 (103)
T ss_pred hhhhhhHHHHHHHHHHHHccC--CcccCCccCHHHHHHHHHHHHHHHc-----C--CCCCChHHHHHHHHHHcCHHHHHH
Confidence 556678999999999999976 8999999999999999999887521 2 236799999999999999999987
Q ss_pred cch
Q 028155 197 KAE 199 (213)
Q Consensus 197 ~~~ 199 (213)
...
T Consensus 100 ~~~ 102 (103)
T cd03207 100 AAI 102 (103)
T ss_pred hcc
Confidence 653
No 77
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.32 E-value=1.6e-11 Score=78.48 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=60.5
Q ss_pred eEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 3 ~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
++||++.+..+ .-..||+|.++.++|+.+|++|+.+...- + ..+|.|++|+|+++|+.+.||..|++||.+
T Consensus 1 ~~L~~~~~~~g--~ps~sp~clk~~~~Lr~~~~~~~v~~~~n----~---~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 1 MELHVWGGDWG--LPSVDPECLAVLAYLKFAGAPLKVVPSNN----P---WRSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred CEEEEECCCCC--CCcCCHHHHHHHHHHHcCCCCEEEEecCC----C---CCCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 47899887766 56778999999999999999998874431 1 246889999999999999999999999986
Q ss_pred h
Q 028155 83 K 83 (213)
Q Consensus 83 ~ 83 (213)
+
T Consensus 72 ~ 72 (73)
T cd03078 72 Q 72 (73)
T ss_pred c
Confidence 4
No 78
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.31 E-value=5e-12 Score=87.79 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+....++.+.++.||+.|+++ +|++|+++|+|||++++.+.++.. .+.. ..++|+|.+|+++|.++|+++++
T Consensus 42 ~~~~~~~~~~l~~le~~l~~~--~~l~G~~~t~aDi~~~~~~~~~~~-----~~~~-~~~~p~l~~w~~~~~~~p~~k~~ 113 (114)
T cd03188 42 AAARERLAARLAYLDAQLAGG--PYLLGDRFSVADAYLFVVLRWAPG-----VGLD-LSDWPNLAAYLARVAARPAVQAA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CeeeCCCcchHHHHHHHHHHHHhh-----cCCC-hhhChHHHHHHHHHHhCHHhHhh
Confidence 445678899999999999855 899999999999999999887642 1222 35799999999999999999886
Q ss_pred c
Q 028155 197 K 197 (213)
Q Consensus 197 ~ 197 (213)
+
T Consensus 114 ~ 114 (114)
T cd03188 114 L 114 (114)
T ss_pred C
Confidence 4
No 79
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.31 E-value=4.3e-12 Score=88.15 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+...+++.+.|+.+|+.|+++ +|++|+++|+|||++++.+.++... +......+|++.+|++++.++|+++++
T Consensus 39 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~~~~~p~~~~~ 111 (113)
T cd03178 39 ERYTNEAKRLYGVLDKRLAGR--DYLAGDEYSIADIAIFPWVRRLEWI-----GIDDLDDFPNVKRWLDRIAARPAVQRG 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CcccCCCCCeeeeeHHHHHHHHHhc-----cccchhhchHHHHHHHHHhhCHHHHHh
Confidence 446678999999999999865 8999999999999999999887532 222346799999999999999999986
Q ss_pred c
Q 028155 197 K 197 (213)
Q Consensus 197 ~ 197 (213)
+
T Consensus 112 ~ 112 (113)
T cd03178 112 L 112 (113)
T ss_pred c
Confidence 5
No 80
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.31 E-value=6.6e-12 Score=88.39 Aligned_cols=76 Identities=18% Similarity=0.328 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccccc
Q 028155 119 TEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 198 (213)
Q Consensus 119 ~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 198 (213)
....+.+.|..||+.|++++++|++|+++|+|||++++.+.++... +.. ...+|+|.+|++++.++|+++++.+
T Consensus 45 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~~-----~~~-~~~~p~l~~w~~~~~~~p~~~~~~~ 118 (121)
T cd03191 45 YRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARRF-----GVD-LSPYPTIARINEACLELPAFQAAHP 118 (121)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHHh-----CCC-cccCcHHHHHHHHHHhChhHHHhCc
Confidence 3456888999999999853347999999999999999988876421 222 3679999999999999999999876
Q ss_pred hH
Q 028155 199 EK 200 (213)
Q Consensus 199 ~~ 200 (213)
.+
T Consensus 119 ~~ 120 (121)
T cd03191 119 DN 120 (121)
T ss_pred Cc
Confidence 54
No 81
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.29 E-value=5.5e-12 Score=88.21 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+.....+.+.|+.||+.|+.+ +|++|+++|+|||++++++.++... .......++|+|.+|++++.++|+++++
T Consensus 44 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~l~~~~~~~~~~----~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 117 (118)
T cd03187 44 EENEEKLKKVLDVYEARLSKS--KYLAGDSFTLADLSHLPYLQYLMAT----PFAKLFDSRPHVKAWWEDISARPAWKKV 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHcccC--cccCCCCccHHHHHHHHHHHHHHHc----cchhhhhcCchHHHHHHHHHhCHHHHhh
Confidence 345678899999999999865 9999999999999999998877531 1112235799999999999999999875
Q ss_pred c
Q 028155 197 K 197 (213)
Q Consensus 197 ~ 197 (213)
+
T Consensus 118 ~ 118 (118)
T cd03187 118 L 118 (118)
T ss_pred C
Confidence 3
No 82
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.28 E-value=1.8e-11 Score=84.48 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHHHHHHhhhCC--------CCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCC----CccchHHHHHH
Q 028155 117 DGTEQALLEELKALDEHLKTHG--------GPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTV----PESLAHVHGYT 184 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~--------~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~----~~~~p~l~~w~ 184 (213)
+....++.+.|+.||+.|.++. ++|++|+++|+|||++++.+.++... +.+. ...+|+|.+|+
T Consensus 28 ~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~-----~~~~~~~~~~~~P~l~~w~ 102 (111)
T cd03204 28 KKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL-----GLSRRYWGNGKRPNLEAYF 102 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc-----CccccccccccChHHHHHH
Confidence 4566788999999999998641 25999999999999999999887632 2222 35799999999
Q ss_pred HHhhcCccc
Q 028155 185 KKLFALESF 193 (213)
Q Consensus 185 ~~~~~~p~~ 193 (213)
++|.+||+|
T Consensus 103 ~rv~aRpsf 111 (111)
T cd03204 103 ERVLQRESF 111 (111)
T ss_pred HHHHcCCCC
Confidence 999999986
No 83
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.25 E-value=1.9e-11 Score=85.67 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCccccc
Q 028155 116 NDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQK 195 (213)
Q Consensus 116 ~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~ 195 (213)
.+.....+.+.|+.||+.|+++ +|++|+++|+||+++++++.++... .+.. ...+|+|.+|+++|.++|++++
T Consensus 36 ~~~~~~~~~~~l~~le~~L~~~--~~l~G~~~s~aDi~l~~~~~~~~~~----~~~~-~~~~p~l~~w~~~~~~~p~~~~ 108 (118)
T cd03177 36 PEEKLDKLEEALDFLETFLEGS--DYVAGDQLTIADLSLVATVSTLEAL----LPLD-LSKYPNVRAWLERLKALPPYEE 108 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHccC--CeeCCCCcCHHHHHHHHHHHHHHHh----cCCC-hhhCchHHHHHHHHHcccchHH
Confidence 3667788999999999999865 8999999999999999999887531 1222 3569999999999999999998
Q ss_pred ccchH
Q 028155 196 TKAEK 200 (213)
Q Consensus 196 ~~~~~ 200 (213)
.....
T Consensus 109 ~~~~~ 113 (118)
T cd03177 109 ANGKG 113 (118)
T ss_pred HHHHH
Confidence 66444
No 84
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.25 E-value=1.4e-11 Score=77.94 Aligned_cols=65 Identities=25% Similarity=0.522 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHH
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKK 186 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 186 (213)
++.++.+.+.|+.||+.|+.+ +|+.|++||+|||++++++.++..... +..+...+|+|.+|++|
T Consensus 5 ~~~~~~~~~~l~~le~~L~~~--~fl~G~~~s~aD~~l~~~l~~~~~~~~---~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 5 ERARAQLEAALDALEDHLADG--PFLFGDRPSLADIALAPFLWRLRFVGP---DFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--SBTTBSS--HHHHHHHHHHHHHHHCTH---TCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC--CCCCCCCCCHHHHHHHHHHHHHHHhCc---CcCccccCHHHHHHHhC
Confidence 466788999999999999988 799999999999999999999875432 22445789999999986
No 85
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.23 E-value=2.3e-11 Score=86.22 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhc--Ccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFA--LESFQ 194 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~--~p~~~ 194 (213)
+...+.+.+.++.+|+.|.+. ++|++|+++|+|||++++.+.+... .+.+...++|+|.+|++++.+ ||+++
T Consensus 44 ~~~~~~~~~~l~~le~~l~~~-~~~l~Gd~~t~ADi~l~~~~~~~~~-----~~~~~~~~~p~l~~w~~~~~~~~~p~~~ 117 (126)
T cd03183 44 KKAEENLEESLDLLENYFLKD-KPFLAGDEISIADLSAVCEIMQPEA-----AGYDVFEGRPKLAAWRKRVKEAGNPLFD 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCcccCCCCCHHHHHHHHHHHHHHh-----cCCcccccCchHHHHHHHHHHhcchhHH
Confidence 345567889999999975432 4899999999999999998876642 233335789999999999999 99998
Q ss_pred ccc
Q 028155 195 KTK 197 (213)
Q Consensus 195 ~~~ 197 (213)
+++
T Consensus 118 ~~~ 120 (126)
T cd03183 118 EAH 120 (126)
T ss_pred HHH
Confidence 865
No 86
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.22 E-value=4e-11 Score=83.77 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESF 193 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 193 (213)
+....++.+.|+.||+.|+.+ +|++|+++|+|||++++.+.++.. .+.++...+|+|.+|++++.++|++
T Consensus 48 ~~~~~~l~~~l~~le~~L~~~--~~l~gd~~t~aDi~l~~~~~~~~~-----~~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 48 ERSKARAADFLAYLDTRLAGS--PYVAGDRFTIADITAFVGLDFAKV-----VKLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CcccCCCCCHHHHHHHHHhHHHHh-----cCCCCccccHHHHHHHHHHHhccCC
Confidence 455678899999999999866 899999999999999999987653 2334446799999999999999974
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.21 E-value=4.9e-11 Score=81.11 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESF 193 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 193 (213)
+...+++.+.++.+|+.|+++ +|++|+++|+|||++++++.+... .+. ....+|+|.+|++++.++|++
T Consensus 32 ~~~~~~~~~~l~~le~~L~~~--~~l~G~~~t~aDi~~~~~~~~~~~-----~~~-~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 32 ETAIARAHRLLRLLEEHLAGR--DWLAGDRPTIADVAVYPYVALAPE-----GGV-DLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CccCCCCCCHHHHHHHHHHHHHhc-----cCC-ChhhCcHHHHHHHHHHhCcCC
Confidence 556788999999999999976 899999999999999988865421 121 236799999999999999985
No 88
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.20 E-value=6e-11 Score=81.78 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCccc
Q 028155 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESF 193 (213)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 193 (213)
...+.+.+.|+.||+.|+++ +|++|+++|+|||++++++..... . +. ...++|+|.+|+++|.++|+|
T Consensus 43 ~~~~~~~~~l~~lE~~L~~~--~~l~g~~~t~aDi~~~~~~~~~~~----~-~~-~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 43 ASLAAWAKLMAILDAQLAGR--PYLAGDRFTLADIPLGCSAYRWFE----L-PI-ERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CcccCCCCCHHHHHHHHHHHHHHH----c-cc-ccccCchHHHHHHHHHhCCCC
Confidence 45678999999999999865 899999999999999998854421 1 11 247899999999999999986
No 89
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.19 E-value=5.5e-11 Score=80.74 Aligned_cols=66 Identities=26% Similarity=0.441 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFA 189 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 189 (213)
+...+++.+.+..+|+.|+.++++|++|++||+|||++|++|..+.. . .+.+++|+|.+|+++|++
T Consensus 34 ~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~------~-~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 34 DFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW------A-DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC------C-HHTTTCHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh------c-ccccccHHHHHHHHhhcC
Confidence 56678899999999999999855599999999999999998866541 1 122689999999999974
No 90
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.19 E-value=2.4e-11 Score=85.61 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+...+.+.+.|+.||+.|+.+ +|++|+++|+|||++++++.++.... .+......+|++.+|++++.++|+++++
T Consensus 39 ~~~~~~~~~~l~~le~~l~~~--~~l~G~~~siaDi~l~~~~~~~~~~~---~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 113 (123)
T cd03181 39 EAALEELDRVLGVLEERLLKR--TYLVGERLTLADIFVAGALLLGFTYV---FDKEWRAKYPNVTRWFNTVVNQPIFKAV 113 (123)
T ss_pred HHHHHHHHHHHHHHHHHHccC--ceeccCCccHHHHHHHHHHHHHHHHH---cCHHHHHhChHHHHHHHHHHcCHHHHHH
Confidence 456678889999999999976 89999999999999999998874321 1111235789999999999999999998
Q ss_pred cchHH
Q 028155 197 KAEKQ 201 (213)
Q Consensus 197 ~~~~~ 201 (213)
+++.+
T Consensus 114 ~~~~~ 118 (123)
T cd03181 114 FGEVK 118 (123)
T ss_pred cCCCC
Confidence 87654
No 91
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.13 E-value=1.7e-10 Score=80.86 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCc
Q 028155 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALE 191 (213)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 191 (213)
....++.+.|+.||+.|+++ +|++|+++|+|||++++.+.++... +. ....+|+|.+|++++.++|
T Consensus 54 ~~~~~~~~~l~~le~~L~~~--~~l~Gd~~t~ADi~l~~~~~~~~~~-----~~-~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 54 FINPELKKHLDFLEDRLAKK--GYFVGDKLTAADIMMSFPLEAALAR-----GP-LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred HHhHHHHHHHHHHHHHHccC--CCCCCCCCCHHHHHHHHHHHHHHHc-----Cc-ccccCchHHHHHHHHhcCC
Confidence 34567899999999999876 9999999999999999988877431 22 3468999999999999987
No 92
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.13 E-value=2.8e-10 Score=76.85 Aligned_cols=94 Identities=17% Similarity=0.227 Sum_probs=65.7
Q ss_pred HHHHHHhCCCCCCCCCh--HHHhhhccchHHHHHhhcCCCCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhh
Q 028155 77 VRIIEEKYPEPSLTNPP--EFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSL 154 (213)
Q Consensus 77 ~~yL~~~~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l 154 (213)
++||.+.. ++.|.+ +..++..++.-....+.. ....++.+.+..+|++|+.+ +|++|+++|+|||++
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~------~~~~~~~~~l~~le~~L~~~--~fl~Gd~~tiADi~l 69 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE------GSSKEKAAVLRALNSALGRS--PWLVGSEFTVADIVS 69 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHcCC--CccCCCCCCHHHHHH
Confidence 47888873 355533 456666666532222221 12356678899999999976 999999999999999
Q ss_pred hhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcC
Q 028155 155 APKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFAL 190 (213)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 190 (213)
++.+.+. +.. ...+|+|.+|+++|.++
T Consensus 70 ~~~l~~~--------~~~-~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 70 WCALLQT--------GLA-SAAPANVQRWLKSCENL 96 (96)
T ss_pred HHHHHHc--------ccc-cccChHHHHHHHHHHhC
Confidence 9887642 111 25789999999999864
No 93
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.13 E-value=3.6e-10 Score=73.52 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=56.1
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
.++||||.+++.+|+..|++|+.+.++-.....++...++..++|++..+|..+.++..|.+||+
T Consensus 15 ~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 15 KPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 35799999999999999999999888655444556667788899999999999999999999984
No 94
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.12 E-value=1.8e-10 Score=80.34 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+...+.+.+.+..+|..|+ .+++|++| ++|+||+++++.+.|+.. .+.++ . |++.+|+++|.+||+|++.
T Consensus 41 ~~~~~~~~~~~~~le~~l~-~~~~~l~G-~fSiAD~~l~~~~~~~~~-----~g~~l-~--p~l~ay~~r~~~rPa~~~~ 110 (114)
T cd03195 41 EAAQAAAEKLIAVAEALLP-PGAANLFG-EWCIADTDLALMLNRLVL-----NGDPV-P--ERLRDYARRQWQRPSVQAW 110 (114)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCCcccC-CccHHHHHHHHHHHHHHH-----cCCCC-C--HHHHHHHHHHHCCHHHHHH
Confidence 5677788999999999997 33489999 599999999999988753 24444 2 9999999999999999987
Q ss_pred cc
Q 028155 197 KA 198 (213)
Q Consensus 197 ~~ 198 (213)
++
T Consensus 111 ~~ 112 (114)
T cd03195 111 LA 112 (114)
T ss_pred Hh
Confidence 64
No 95
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.11 E-value=3.3e-10 Score=78.99 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHHHHhhhC-CCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCccccc
Q 028155 117 DGTEQALLEELKALDEHLKTH-GGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQK 195 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~-~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~ 195 (213)
+...+.+.+.+..+|..|... +++|++|+ +|+||+++++++.++.. .+.+. .|+|.+|++++.++|++++
T Consensus 40 ~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~-----~~~~~---~P~l~~~~~rv~~rPsv~~ 110 (114)
T cd03194 40 EAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRT-----YGLPL---SPAAQAYVDALLAHPAMQE 110 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHH-----cCCCC---CHHHHHHHHHHHCCHHHHH
Confidence 556667778888888877643 46899999 99999999999888742 12222 2999999999999999998
Q ss_pred ccc
Q 028155 196 TKA 198 (213)
Q Consensus 196 ~~~ 198 (213)
++.
T Consensus 111 ~~~ 113 (114)
T cd03194 111 WIA 113 (114)
T ss_pred HHh
Confidence 764
No 96
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.08 E-value=4.5e-10 Score=79.46 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcC
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFAL 190 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 190 (213)
+...+.+.+.|+.||+.|+++ +|++|+++|+||+++++.+.++... .+..+..++|+|.+|+++|.+.
T Consensus 57 ~~~~~~~~~~l~~l~~~L~~~--~fl~Gd~~t~AD~~l~~~l~~~~~~----~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 57 EAALANFRAALEPLRATLKGQ--PFLGGAAPNYADYIVFGGFQWARIV----SPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--CccCCCCCchhHHHHHHHHHHHHHc----CcccccccCChHHHHHHHHhcC
Confidence 567788999999999999876 8999999999999999999887632 2334457899999999999763
No 97
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.95 E-value=5.8e-10 Score=73.98 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCC---CCCccchHHHHHHHHhh
Q 028155 118 GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQW---TVPESLAHVHGYTKKLF 188 (213)
Q Consensus 118 ~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~---~~~~~~p~l~~w~~~~~ 188 (213)
...+++.+.++.+|+.|+++ +|++|+++|+|||++++.+.++.... .... .....+|+|++|++++.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~--~yl~Gd~~t~aDi~l~~~l~~~~~~~--~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDK--KFFFGDKPTSLDATVFGHLASILYAP--LPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CccCCCCCCHHHHHHHHHHHHHHhcC--CCChHHHHHHHhCcHHHHHHHHhC
Confidence 55678999999999999976 89999999999999999998775310 0000 01356999999999974
No 98
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.95 E-value=2.3e-09 Score=72.18 Aligned_cols=66 Identities=23% Similarity=0.456 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHh
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKL 187 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 187 (213)
+...+.+.+.++.||+.|+.+ +|++|+++|+||+++++++.++....... .+...+|+|.+|++++
T Consensus 35 ~~~~~~~~~~~~~l~~~L~~~--~~~~g~~~t~aDi~~~~~l~~~~~~~~~~---~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 35 EEAREELAAALAALEKLLAGR--PYLAGDRFSLADIALAPVLARLDLLGPLL---GLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccC--CCCCCCCcCHHHHHHHHHHHHHHHhhhhh---hhhccCccHHHHHHhC
Confidence 566778999999999999876 89999999999999999999987543211 1346799999999875
No 99
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.91 E-value=3.1e-09 Score=72.54 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhh
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLF 188 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 188 (213)
+....++.+.++.||+.|+.+ +|++|+++|+|||++++.+.++.. .+.+ ..++|+|.+|+++++
T Consensus 42 ~~~~~~~~~~l~~le~~L~~~--~~l~g~~~slaDi~~~~~~~~~~~-----~~~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 42 AFLRERGHAALAVLEAHLAGR--DFLVGDALTIADIALAAYTHVADE-----GGFD-LADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHccC--ccccCCCCCHHHHHHHHHHHhccc-----cCCC-hHhCccHHHHHHhhC
Confidence 456778899999999999765 899999999999999999988742 2223 467999999999874
No 100
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.87 E-value=1.1e-08 Score=65.12 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=54.6
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
.++||||.+++.+|...|++|+.+.++......++.......++|++..+|..+.++..|.+||+
T Consensus 8 ~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 8 KPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 45699999999999999999999988755433345555677899999999999999999999974
No 101
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.85 E-value=5.5e-09 Score=71.34 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCC-CccchHHHHHHHHh
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTV-PESLAHVHGYTKKL 187 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~-~~~~p~l~~w~~~~ 187 (213)
+...+.+.+.++.||+.|...+++|++|+++|+||+++++.+.++.... ... ...+|+|.+|++++
T Consensus 38 ~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~~-----~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 38 EFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYLD-----PKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhhC-----chhhHHhChhHHHHHHhC
Confidence 4456778899999999998723489999999999999999998885321 122 46799999999875
No 102
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.82 E-value=3.8e-09 Score=74.91 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCC-CCCccchHHHHHHHHhh
Q 028155 114 DPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQW-TVPESLAHVHGYTKKLF 188 (213)
Q Consensus 114 ~~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~ 188 (213)
...++..+...+.|+.|++.|+++ +|++|++||.+|+++++++..+.......... ....++|||.+|++||.
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~~--~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGTQ--PYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 344778888999999999999987 99999999999999999998876320000001 12467999999999973
No 103
>PRK10638 glutaredoxin 3; Provisional
Probab=98.81 E-value=1.8e-08 Score=66.04 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=55.0
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL 80 (213)
.++||||++++.+|+..|++|+.+.++... ..+++.+.++..++|++..+|..|.....+..+-
T Consensus 9 ~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 9 KATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHH
Confidence 456999999999999999999999887653 4567888999999999999999999988877653
No 104
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.76 E-value=3.4e-08 Score=71.18 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=57.1
Q ss_pred HHhhcCCCCC-chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHH
Q 028155 107 VNFLKSKDPN-DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTK 185 (213)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~ 185 (213)
...+..+... ++.++.+...++.+=+.+..+ ++|++|++||+|||++++++..+... .++....++|+|.+|++
T Consensus 67 sk~lkk~~~i~~D~r~~L~~a~~~w~~~~~~~-~~FlaGd~ptIADisvyg~l~s~e~~----~~~~Dl~~~p~I~~W~e 141 (149)
T cd03197 67 SKYLKKPRLLQDDVREWLYDALNTWVAALGKD-RQFHGGSKPNLADLAVYGVLRSVEGH----PAFKDMVEETKIGEWYE 141 (149)
T ss_pred HHHhccccCCCchHHHHHHHHHHHHHHHhcCC-CCccCCCCCCHHHHHHHHHHHHHHHh----ccccchhhCcCHHHHHH
Confidence 3344444443 556788888888776666654 58999999999999999999877532 23322457999999999
Q ss_pred Hhhc
Q 028155 186 KLFA 189 (213)
Q Consensus 186 ~~~~ 189 (213)
+|.+
T Consensus 142 Rm~~ 145 (149)
T cd03197 142 RMDA 145 (149)
T ss_pred HHHH
Confidence 9976
No 105
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=4e-07 Score=72.28 Aligned_cols=174 Identities=19% Similarity=0.179 Sum_probs=112.4
Q ss_pred eEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEe-CCeeecCcHHHHHHHH
Q 028155 3 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRIIE 81 (213)
Q Consensus 3 ~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~-~~~~l~eS~aI~~yL~ 81 (213)
++|+++.++-+ --..||-|..+.+.+..++-|..+...+-.. ..|.|++|+|++ +|+.+..-..|+.+|.
T Consensus 2 ~~L~~~~~~~g--lptid~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~sg~LP~l~~~ng~~va~~~~iv~~L~ 72 (313)
T KOG3028|consen 2 LELHIWSGGYG--LPTIDPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPSGKLPYLITDNGTKVAGPVKIVQFLK 72 (313)
T ss_pred ceEEEecCCCC--CCCcChhHHHHHHHHHHhCCCceeEeecCCC-------CCCCCCCCeEEecCCceeccHHHHHHHHH
Confidence 57888777766 2335689999999999999665555443222 357899999996 5599999999999998
Q ss_pred HhCCCCCCCCChH---HH-------hhhccchHHH------------------H---------------------H---h
Q 028155 82 EKYPEPSLTNPPE---FA-------SLGSKIFPSF------------------V---------------------N---F 109 (213)
Q Consensus 82 ~~~~~~~l~~~~~---~~-------~~~~~l~~~~------------------~---------------------~---~ 109 (213)
.....-.+.+... .+ .+..++.+.+ + . .
T Consensus 73 k~~~ky~~d~dl~~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l 152 (313)
T KOG3028|consen 73 KNTKKYNLDADLSAKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQL 152 (313)
T ss_pred HhcccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHH
Confidence 8522211221111 11 1111111110 0 0 0
Q ss_pred hcCCC--CCchHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCC---CccchHHHHHH
Q 028155 110 LKSKD--PNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTV---PESLAHVHGYT 184 (213)
Q Consensus 110 ~~~~~--~~~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~---~~~~p~l~~w~ 184 (213)
..+.. .+++......++++.|++.|+++ .|+.|++||-.|+.++..+..+.... .....+ ...++||.+++
T Consensus 153 ~~g~~~~~e~~i~~~Aska~~~LS~~Lgs~--kffFgd~psslDa~lfs~la~~~~~~--Lp~~~Lq~~l~~~~NL~~~~ 228 (313)
T KOG3028|consen 153 TLGELTEREDQIYKDASKALNLLSTLLGSK--KFFFGDKPSSLDALLFSYLAILLQVA--LPNDSLQVHLLAHKNLVRYV 228 (313)
T ss_pred HhCCchhhHHHHHHHHHHHHHHHHHHhcCc--eEeeCCCCchHHHHHHHHHHHHHhcc--CCchhHHHHHHhcchHHHHH
Confidence 11111 12445566788899999999988 99999999999999999998843221 111111 13489999999
Q ss_pred HHhhc
Q 028155 185 KKLFA 189 (213)
Q Consensus 185 ~~~~~ 189 (213)
+++..
T Consensus 229 ~~i~s 233 (313)
T KOG3028|consen 229 ERIRS 233 (313)
T ss_pred HHHHH
Confidence 99875
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.69 E-value=8.9e-08 Score=62.43 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=47.2
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeec
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~ 71 (213)
|.+|||. .++||||.+++-+|...||+|+.+.++......+.+..++..++|+++.++..+.
T Consensus 1 ~~v~lYt---------~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 1 MRITIYT---------RNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred CEEEEEe---------CCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 6677773 4569999999999999999999998875432223344568889999999886544
No 107
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.67 E-value=6.7e-08 Score=65.33 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHh
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKL 187 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 187 (213)
+....++.+.|+.+|+.|+++ +| +++|+|||++++.+.+..... .+.....++|+|.+|+++|
T Consensus 36 ~~~~~~~~~~l~~le~~L~~~--~~---d~~TlADi~l~~~l~~~~~~~---~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 36 ERQRGKIERALDALEAELAKL--PL---DPLDLADIAVACALGYLDFRH---PDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHhhhhC--CC---CCCCHHHHHHHHHHHHHHhHc---cCcchhhhChHHHHHHHhC
Confidence 456678899999999999876 77 799999999999998885321 1223346899999999986
No 108
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.62 E-value=2.5e-08 Score=71.73 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCC---CCCccchHHHHHHHHhhc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQW---TVPESLAHVHGYTKKLFA 189 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~---~~~~~~p~l~~w~~~~~~ 189 (213)
++..++..+.|+.||+.|+++ +|+.|+++|.+|+.+++++..+.... .... .....+|||.+|++||.+
T Consensus 63 ~~~~~~a~~~l~~l~~~L~~~--~~~~Gd~~t~~D~~~~~~l~~~~~~~--~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 63 AEIYRDAKECLNLLSQRLGES--QFFFGDTPTSLDALVFGYLAPLLKAP--LPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHHHHHHHHHHHHHHHHCCC--CcCCCCCCcHHHHHHHHHHHHHHhcc--CCChHHHHHHHHCcHHHHHHHHHHH
Confidence 566778889999999999987 99999999999999999988775311 1000 124679999999999975
No 109
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7e-07 Score=58.02 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=52.2
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCC--CchhHHh-hCCCCCCceEEeCCeeecCcHHHH
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD--KPQWFME-ISPEGKVPVVKFDDKWVADSDVIV 77 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~-~~p~g~vP~L~~~~~~l~eS~aI~ 77 (213)
|++|+|.++ +||||.++.-+|..+|++|+++.++... ...++.. .++..++|++..||..+.....+-
T Consensus 1 ~~v~iyt~~---------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~ 71 (80)
T COG0695 1 ANVTIYTKP---------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLD 71 (80)
T ss_pred CCEEEEECC---------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHH
Confidence 456666544 4999999999999999999999998766 3334544 458899999999997776544433
Q ss_pred H
Q 028155 78 R 78 (213)
Q Consensus 78 ~ 78 (213)
+
T Consensus 72 ~ 72 (80)
T COG0695 72 A 72 (80)
T ss_pred H
Confidence 3
No 110
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.45 E-value=8.1e-07 Score=56.63 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=50.0
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIV 77 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~ 77 (213)
.+.||+|.+++.+|+..||+|+.+.+.... ..+++.+.++.+++|++..+|..|..-....
T Consensus 8 ~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 8 RLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred cCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHH
Confidence 356999999999999999999999886533 3456788889999999999998887655543
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.44 E-value=8.2e-07 Score=55.79 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=52.7
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
.++||+|++++.+|...+++|+.+.+.... ...++.+.++..++|++..+|..+.++..|.+.
T Consensus 7 ~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 7 KSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 345999999999999999999988776543 345677788999999999999999999887653
No 112
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.40 E-value=1.3e-06 Score=55.27 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=50.5
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeee--cCcHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWV--ADSDVIVRII 80 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l--~eS~aI~~yL 80 (213)
.++||+|++++.+|...|++|..+.++... ..+++.+.++.+.+|+++++|+.+ +++.+|-++|
T Consensus 7 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 7 TPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 567999999999999999999888775433 234567788899999999988777 6666666654
No 113
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.36 E-value=3.9e-06 Score=55.14 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=58.6
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHH-----cCCCCeEEEecCCCC-chhHHhhCC--CCCCceEEeCCeeecC
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEE-----KKVPYKRHLINISDK-PQWFMEISP--EGKVPVVKFDDKWVAD 72 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~-~~~~~~~~p--~g~vP~L~~~~~~l~e 72 (213)
|.+++|.+ ++||+|.+++-+|+. .|++|+.+.+.-... .+++..... ...+|++..||..+.+
T Consensus 1 m~v~iy~~---------~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg 71 (85)
T PRK11200 1 MFVVIFGR---------PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGG 71 (85)
T ss_pred CEEEEEeC---------CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcC
Confidence 67777754 459999999999999 899999888874321 223433332 2589999999999999
Q ss_pred cHHHHHHHHHhCC
Q 028155 73 SDVIVRIIEEKYP 85 (213)
Q Consensus 73 S~aI~~yL~~~~~ 85 (213)
...|..++...++
T Consensus 72 ~~~~~~~~~~~~~ 84 (85)
T PRK11200 72 CTDFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987664
No 114
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.36 E-value=3.3e-06 Score=53.55 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=53.3
Q ss_pred EEEEecCCCCCccCCChhHHHHHHHHHHcCCC---CeEEEecCCCCchhHHhhCCCCCCceEEe-CCeeecCcHHHHHHH
Q 028155 5 ICVKAAVGAPDILGDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF-DDKWVADSDVIVRII 80 (213)
Q Consensus 5 l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~g~vP~L~~-~~~~l~eS~aI~~yL 80 (213)
|+++.+..+ --..+|-|.++.++|...+.+ ++++..+-. ..+|.|++|+|.+ +++.+.+-..|++||
T Consensus 1 LhvWg~~~g--lpsid~ecLa~~~yl~~~~~~~~~~~vv~s~n~-------~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 1 LHVWGGDWG--LPSIDPECLAVIAYLKFAGAPEQQFKVVPSNNP-------WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CeEeCCCCC--CCccCHHHHHHHHHHHhCCCCCceEEEEEcCCC-------CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 456666544 345679999999999999999 666544321 2578999999999 899999999999998
No 115
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.34 E-value=1.5e-06 Score=54.79 Aligned_cols=57 Identities=19% Similarity=0.373 Sum_probs=46.7
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCc
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADS 73 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS 73 (213)
.++||+|.+++.+|.+.|++|..+.++... ..+++.+.+|.+++|+|+++|..+.+.
T Consensus 7 ~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 7 KPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 457999999999999999999988886533 235677888999999999988776554
No 116
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.30 E-value=6.5e-06 Score=54.73 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=56.1
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
++++|.+..+ ..++||||.+++-+|...|++|+.+.+.... ...++.+.+...++|++..+|..|.+...+...
T Consensus 9 ~vvvf~k~~~----~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 9 PVVLFMKGTP----EEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred CEEEEEcCCC----CCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHH
Confidence 5666655332 2467999999999999999999999886432 123445566777999999999999888777764
No 117
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.30 E-value=3.1e-06 Score=54.07 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=50.1
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCC-CCceEEeCCeeecCcHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEG-KVPVVKFDDKWVADSDVIVRII 80 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g-~vP~L~~~~~~l~eS~aI~~yL 80 (213)
.++||+|.+++.+|+..|++|+.+.++... ...++....+.. .+|++..+|..+.+...+.++-
T Consensus 7 ~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 7 KPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 356999999999999999999999887541 223344444444 8999999999999988887763
No 118
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.28 E-value=4e-06 Score=54.21 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=52.8
Q ss_pred ccCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHH
Q 028155 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRII 80 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL 80 (213)
+.++||+|.+++-+|+..|++|+.+.++... ...++.+..+...+|++..+|..+.+...+..+-
T Consensus 5 ~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~ 70 (79)
T TIGR02181 5 TKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALD 70 (79)
T ss_pred ecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHH
Confidence 3567999999999999999999999887543 3345666667789999999999998887776654
No 119
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.27 E-value=8e-06 Score=55.10 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=54.4
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
++.+|.+.. . ..++||||.+++-+|...|++|+.+.+.-.. ...++.+.+....+|.+..+|..|.....+...
T Consensus 13 ~Vvvf~kg~--~--~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 13 PVVLYMKGT--P--QFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred CEEEEEccC--C--CCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHH
Confidence 355665444 2 4688999999999999999999988774221 123345567777999999999988887766553
No 120
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.21 E-value=1.9e-05 Score=53.49 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecCCCCc----hhHHhhCCCCCCceEEeCCeeecCcHHHHHH
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKP----QWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
++||||.+++-+|...|++|+.+.++..... .++...++...+|.+..+|+.|.....+...
T Consensus 16 ~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 16 SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 6799999999999999999999888754322 2345556778999999999998887766553
No 121
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.19 E-value=3.2e-06 Score=57.62 Aligned_cols=72 Identities=24% Similarity=0.274 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 196 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 196 (213)
+...+.+.+.+...+..|.. |++||+|+ .|+||..+++++.++.. .|..+ -+++.+|.++..++|++++.
T Consensus 42 ~~a~~~a~kL~~~a~~ll~~-g~~~LFGe-wsIAD~dlA~ml~Rl~~-----~gd~v---P~~l~~Ya~~qwqrpsVQ~W 111 (117)
T PF14834_consen 42 EAAQAAAQKLIAVAERLLAD-GGPNLFGE-WSIADADLALMLNRLVT-----YGDPV---PERLADYAERQWQRPSVQRW 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTT---SSTTSS---HHHHHHHHHHHHHHT-----TT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCCCcccc-chHHHHHHHHHHHHHHH-----cCCCC---CHHHHHHHHHHHCCHHHHHH
Confidence 77788889999999998876 48999995 99999999999998852 23233 26799999999999999987
Q ss_pred cc
Q 028155 197 KA 198 (213)
Q Consensus 197 ~~ 198 (213)
+.
T Consensus 112 la 113 (117)
T PF14834_consen 112 LA 113 (117)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 122
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.18 E-value=4.2e-06 Score=53.17 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=40.8
Q ss_pred ccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCe
Q 028155 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDK 68 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~ 68 (213)
+.+.||+|.+++-+|+..|++|+.+.++......+.+...+...+|+++.+|.
T Consensus 5 ~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 5 SKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred eCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 45679999999999999999999998875432223334456679999998664
No 123
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.14 E-value=1.3e-05 Score=52.88 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=52.3
Q ss_pred ccCCChhHHHHHHHHHHcC-----CCCeEEEecCCC-CchhHHhhCCC--CCCceEEeCCeeecCcHHHHHHHHHhCC
Q 028155 16 ILGDCPFSQRALLTLEEKK-----VPYKRHLINISD-KPQWFMEISPE--GKVPVVKFDDKWVADSDVIVRIIEEKYP 85 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~--g~vP~L~~~~~~l~eS~aI~~yL~~~~~ 85 (213)
+.++||||.+++-+|...+ ++|+.+.++... ...++...... ..||++..+|..+.++..|..++.+.++
T Consensus 6 s~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~~~ 83 (86)
T TIGR02183 6 GRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKENFD 83 (86)
T ss_pred eCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhccc
Confidence 3457999999999999985 556666665322 12344444433 5899999999999999999999887654
No 124
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.08 E-value=4.8e-06 Score=50.87 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=44.7
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeee
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWV 70 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l 70 (213)
.++||+|.+++-+|...|++|+.+.++... ...++.+.....++|++..||+.|
T Consensus 6 ~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 6 KPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp STTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 467999999999999999999999998763 445566666778999999998764
No 125
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.00 E-value=1.5e-05 Score=50.94 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=45.2
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhC-CCCCCceEEe-CCeeecCcH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEIS-PEGKVPVVKF-DDKWVADSD 74 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~-p~g~vP~L~~-~~~~l~eS~ 74 (213)
.++||+|++++..|...|++|+.+.++-.. ...++.+.| +...+|+++. +|..+.++.
T Consensus 7 ~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 7 TTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 467999999999999999999887775443 234456676 8899999974 677777764
No 126
>PHA03050 glutaredoxin; Provisional
Probab=97.99 E-value=4.5e-05 Score=52.44 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=50.3
Q ss_pred ccCCChhHHHHHHHHHHcCC---CCeEEEecCCC-C---chhHHhhCCCCCCceEEeCCeeecCcHHHHH
Q 028155 16 ILGDCPFSQRALLTLEEKKV---PYKRHLINISD-K---PQWFMEISPEGKVPVVKFDDKWVADSDVIVR 78 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~-~---~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~ 78 (213)
+.++||||.+++-+|...|+ +|+.+.++-.. . ..++.+.+...+||.+.++|+.|.....+..
T Consensus 19 s~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 19 VKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred ECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 45679999999999999999 78888887432 2 3456677777899999999999888766655
No 127
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.98 E-value=6.5e-05 Score=48.62 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=53.6
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecCCCCc----hhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINISDKP----QWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
.+||+|.+++-+|...+++|+.+.++..... .++.+.+....+|++..+|..+.++..|..+...
T Consensus 8 ~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 8 SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5699999999999999999999998876542 2344566677999999999999999998887643
No 128
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.89 E-value=0.00012 Score=47.53 Aligned_cols=65 Identities=17% Similarity=0.363 Sum_probs=52.3
Q ss_pred cCCChhHHHHHHHHHHcCCC--CeEEEecCCCCch----hHHhhCCCCCCceEEeCCeeecCcHHHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVP--YKRHLINISDKPQ----WFMEISPEGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
.++||+|.+++-+|...+++ |+.+.++...... .+.+......+|.+..+|..+.++..+.++..
T Consensus 6 ~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 6 KSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 56899999999999999999 8888887754332 24455666789999999999999988877653
No 129
>PRK10824 glutaredoxin-4; Provisional
Probab=97.86 E-value=0.00014 Score=50.42 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=55.3
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
++.+|.|.+. ..++||||.++.-+|...|++|..+.+.-.. ...++...+...++|.+-.+|+.|.....+...
T Consensus 16 ~Vvvf~Kg~~----~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 16 PILLYMKGSP----KLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred CEEEEECCCC----CCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 3556655322 4688999999999999999999887775432 223455667778999999999999888776664
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.52 E-value=0.00073 Score=49.00 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=55.7
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCC----CCCceEEeCCeeecCcHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPE----GKVPVVKFDDKWVADSDVI 76 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~----g~vP~L~~~~~~l~eS~aI 76 (213)
+|+||......- ..++|+|.+++-+|+..+|+|+++.|++.. ..+++.+.... ..+|.+..+|..|.....+
T Consensus 1 ~VvlYttsl~gi---R~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGV---RKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCC---CCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 356666554443 667899999999999999999999887643 23344444333 6899999999998888777
Q ss_pred HHH
Q 028155 77 VRI 79 (213)
Q Consensus 77 ~~y 79 (213)
.+.
T Consensus 78 ~~L 80 (147)
T cd03031 78 LRL 80 (147)
T ss_pred HHH
Confidence 663
No 131
>PTZ00062 glutaredoxin; Provisional
Probab=97.47 E-value=0.00087 Score=51.34 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=53.9
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVR 78 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~ 78 (213)
++.||.|.+. +-++||||.++.-+|...||+|+...+.-.. ....+.+.+....+|.+..+|+.|.....+.+
T Consensus 114 ~Vvvf~Kg~~----~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 114 KILLFMKGSK----TFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred CEEEEEccCC----CCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 3555555433 3467999999999999999999988776332 22344556666789999999999888776665
No 132
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.14 E-value=0.00062 Score=47.92 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESF 193 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 193 (213)
....+++...|..++..+... .. .+..+|+-||.+|++|..+..+ .|..++ |++.+|+++|.+...+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~--~~-~n~~ls~DDi~lFp~LR~Lt~v----kgi~~P---~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSS--EA-VNGQLSTDDIILFPILRNLTLV----KGLVFP---PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCc--cc-cCCcCCHHHHHHHHHHhhhhhh----cCCCCC---HHHHHHHHHHHHHhCC
Confidence 466678888888888888543 33 3557999999999999988643 344443 7899999999887654
No 133
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.04 E-value=0.0014 Score=46.56 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccc
Q 028155 117 DGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQ 194 (213)
Q Consensus 117 ~~~~~~~~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 194 (213)
.+..+++...|..||..+... ...-| ++|+-||.+|+.|..+.. ..|..++ |++.+|+++|.+...+.
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~--~~~n~-~LS~dDi~lFp~LR~Lti----vkgi~~P---~~V~~Y~~~~s~~t~V~ 125 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASP--NAVNG-ELSIDDIILFPILRSLTI----VKGIQWP---PKVRAYMDRMSKATGVP 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCT--TBTTS-S--HHHHHHHHHHHHHCT----CTTS------HHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHhccc--cccCC-CCCHHHHHHHHHHhhhhh----ccCCcCC---HHHHHHHHHHHHHcCCC
Confidence 456677888888888888854 44444 899999999999998753 3454443 78999999998876553
No 134
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.87 E-value=0.004 Score=52.98 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=46.7
Q ss_pred ccCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHH-h--------hCCCCCCceEEeCCeeecCcHHHHH
Q 028155 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFM-E--------ISPEGKVPVVKFDDKWVADSDVIVR 78 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~-~--------~~p~g~vP~L~~~~~~l~eS~aI~~ 78 (213)
+.++||||.++.-+|...||+|+.+.++-.....++. + ......||++..+|+.|..-..+..
T Consensus 8 s~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 8 TKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 3567999999999999999999998887332222222 2 2356789999999988877766644
No 135
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.013 Score=39.83 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=50.9
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchh----HHhhCCCCCCceEEeCCeeecCcHHHHHH
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQW----FMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~----~~~~~p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
-.+||||.+++-.|...|+++..+.++......+ +.+.....++|.+-.+|+.|.....+..+
T Consensus 21 Ks~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 21 KSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred CCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHH
Confidence 4579999999999999999998888876654333 34456667999999999999888887765
No 136
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.043 Score=36.63 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=51.6
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcC-CCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKK-VPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~g-i~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
++.||-|.++ .+|.|.|+.++-=+|..+| ++|..+.|=... -...+.+.+--.++|-|-.+|+.+..|-.|.+-
T Consensus 16 ~VvLFMKGtp----~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 16 PVVLFMKGTP----EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred ceEEEecCCC----CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHH
Confidence 4677777554 4578999999999999999 455444442221 122233445567899999999999998776664
Q ss_pred H
Q 028155 80 I 80 (213)
Q Consensus 80 L 80 (213)
.
T Consensus 92 ~ 92 (105)
T COG0278 92 Y 92 (105)
T ss_pred H
Confidence 3
No 137
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0071 Score=52.05 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=71.2
Q ss_pred CCeeecCcHHHHHHHHHhCCC-CCCCCC-hHHHhhhccchHHHHHhhcCCCCCchHHHHHHHHHHHHHHHhhhCCCCccc
Q 028155 66 DDKWVADSDVIVRIIEEKYPE-PSLTNP-PEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIA 143 (213)
Q Consensus 66 ~~~~l~eS~aI~~yL~~~~~~-~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~ 143 (213)
++..+..+..+..|....... +.+++. .++.++..|+--... ..-.++...+..++..|... +|++
T Consensus 44 d~~~l~~a~~~~~~~~~~~~~~~~lf~~~~d~~~vd~w~~~s~~----------~~~~~~s~~~~~ld~~l~~~--t~lv 111 (712)
T KOG1147|consen 44 DGRKLNGATEPVVYSAALAKADPKLFGNNIDRSQVDHWVSFSST----------FSFDEISSSLSELDKFLVLR--TFLV 111 (712)
T ss_pred ccccccCCccchhhhhhhcccCHhHcCCcccHHHHHHHHHHhhh----------cchHHHHHHHHHHHhhhhHH--HHhh
Confidence 455566666667776543332 234443 345555555432222 12357888899999999998 9999
Q ss_pred CCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCccccccc
Q 028155 144 GEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTK 197 (213)
Q Consensus 144 G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 197 (213)
|.++|+||+++|..+..-..... .......+-++.+|++-....++.+.+.
T Consensus 112 g~sls~Ad~aiw~~l~~n~~~~~---~lk~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 112 GNSLSIADFAIWGALHSNGMRQE---QLKAKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred ccchhHHHHHHHHHHhcccchHH---HHHhhCCchhhhhhcCcHhHHHHHHHHH
Confidence 99999999999998874211100 0111235678999999444444444433
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.71 E-value=0.032 Score=34.29 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=34.8
Q ss_pred cCCChhHHHHHHHHHHc-----CCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecC
Q 028155 17 LGDCPFSQRALLTLEEK-----KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVAD 72 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~e 72 (213)
.++||+|.++.-.|++. ++.+..+ +..+. +++........+|++..+|..++.
T Consensus 8 ~~~C~~C~~~~~~l~~l~~~~~~i~~~~i--d~~~~-~~l~~~~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 8 SPTCPYCPDAVQAANRIAALNPNISAEMI--DAAEF-PDLADEYGVMSVPAIVINGKVEFV 65 (67)
T ss_pred CCCCCCcHHHHHHHHHHHHhCCceEEEEE--EcccC-HhHHHHcCCcccCEEEECCEEEEe
Confidence 34699999999888765 4555444 43332 334444555679999998876653
No 139
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.27 E-value=0.089 Score=34.95 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCC----CCCCceEEeCCeeecCcHHHHH
Q 028155 21 PFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISP----EGKVPVVKFDDKWVADSDVIVR 78 (213)
Q Consensus 21 p~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p----~g~vP~L~~~~~~l~eS~aI~~ 78 (213)
-.|++++.+|.-+||+|+++.++... ...++.+..+ ...+|.+-.++..+.+...+..
T Consensus 17 ~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 17 KRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred HHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 36899999999999999999998754 2344544433 4789999999998887655444
No 140
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.29 E-value=0.72 Score=31.57 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=53.4
Q ss_pred ceEEEEEecC-CC---CCccCCChhHHHHHHHHHHc---CCCCeEEEecCCCCchhHHhhC--CCCCCceEEe-CC----
Q 028155 2 AVEICVKAAV-GA---PDILGDCPFSQRALLTLEEK---KVPYKRHLINISDKPQWFMEIS--PEGKVPVVKF-DD---- 67 (213)
Q Consensus 2 ~~~l~~~~~~-~~---~~~~~~sp~~~~v~~~l~~~---gi~~~~~~v~~~~~~~~~~~~~--p~g~vP~L~~-~~---- 67 (213)
.=+||.-.+. .+ +.....||+|..+.=+|... .-..+++.|+...-..+..+.- -...+|+|+. +|
T Consensus 2 ~d~LfLL~pgF~D~~~PG~~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~ 81 (112)
T PF11287_consen 2 RDILFLLRPGFEDPAGPGQRFYCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSP 81 (112)
T ss_pred CcEEEEecCCCcCCCCCCceEECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCc
Confidence 3356664333 22 12345899998887766432 2346667777665444433321 1357999995 22
Q ss_pred ---------eeecCcHHHHHHHHHhCCC
Q 028155 68 ---------KWVADSDVIVRIIEEKYPE 86 (213)
Q Consensus 68 ---------~~l~eS~aI~~yL~~~~~~ 86 (213)
..|.++..|++||+.+|+-
T Consensus 82 ~~~~~~~~~rfi~d~~~I~~~La~r~g~ 109 (112)
T PF11287_consen 82 DDAGSHGGRRFIDDPRRILRYLAERHGF 109 (112)
T ss_pred ccccccCCeEEeCCHHHHHHHHHHHcCC
Confidence 2699999999999999984
No 141
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.38 E-value=0.13 Score=35.29 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=26.5
Q ss_pred ccCCChhHHHHHHHHHHcCCCCeEEEecCCC
Q 028155 16 ILGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~ 46 (213)
+.+.||+|++++-+|+..|++|+.+.+.-..
T Consensus 5 ~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~ 35 (111)
T cd03036 5 EYPKCSTCRKAKKWLDEHGVDYTAIDIVEEP 35 (111)
T ss_pred ECCCCHHHHHHHHHHHHcCCceEEecccCCc
Confidence 3567999999999999999999999886543
No 142
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.94 E-value=0.21 Score=33.81 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=25.2
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINI 44 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 44 (213)
.+.||+|++++-+|+..|++|+.+.+.-
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 6 NPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 4679999999999999999999998854
No 143
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.88 E-value=0.74 Score=29.57 Aligned_cols=48 Identities=25% Similarity=0.530 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHHcC--CCCeEEEecCCCCchhHHhhCCCCCCceEEeCC
Q 028155 18 GDCPFSQRALLTLEEKK--VPYKRHLINISDKPQWFMEISPEGKVPVVKFDD 67 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~ 67 (213)
+.|+.|..+.-.|+... .+++...+++.+.+.++.+.. ..||+|..+|
T Consensus 8 ~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 8 PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC--TSTSEEEETT
T ss_pred CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc--CCCCEEEEcC
Confidence 34999999999998654 467788888886666554433 4899999877
No 144
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=92.77 E-value=0.64 Score=29.44 Aligned_cols=50 Identities=18% Similarity=0.128 Sum_probs=35.1
Q ss_pred CCChhHHHH----HHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeec
Q 028155 18 GDCPFSQRA----LLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (213)
Q Consensus 18 ~~sp~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~ 71 (213)
+|||.|..+ .-++.+.|+.++...++ + .++ ........+|++..+|..+.
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~-~~~-a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVT--D-MNE-ILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C-HHH-HHHcCCCcCCEEEECCEEEE
Confidence 579999888 55778888888887776 2 222 22234578999999886654
No 145
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=92.62 E-value=0.4 Score=34.13 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=25.5
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~ 45 (213)
.+.|+.|++++-+|...||+|+.+.+.-.
T Consensus 7 ~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 7 ISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 45699999999999999999999988644
No 146
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.53 E-value=0.22 Score=33.52 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=42.2
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCCC-chhHHhhC---------CCCCCceEEeCCeee
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFMEIS---------PEGKVPVVKFDDKWV 70 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~---------p~g~vP~L~~~~~~l 70 (213)
|.|.+|+-..+++ ...=-..+++..+|+.++|+|+.+.++.... ..++.+.. +..-.|.|..++..+
T Consensus 1 m~I~vy~ss~sg~---~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MVIKVYISSISGS---REIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYC 77 (99)
T ss_dssp -SEEEEE-SS-SS---HHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEE
T ss_pred CEEEEEEecccCC---HHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEE
Confidence 8889998333333 1122468999999999999999999887542 22333333 222346788888776
Q ss_pred cCcHHHH
Q 028155 71 ADSDVIV 77 (213)
Q Consensus 71 ~eS~aI~ 77 (213)
.+--.+-
T Consensus 78 Gdye~f~ 84 (99)
T PF04908_consen 78 GDYEDFE 84 (99)
T ss_dssp EEHHHHH
T ss_pred eeHHHHH
Confidence 6654443
No 147
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=92.19 E-value=0.34 Score=33.70 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEe--CCeeecCcHHHHHHHHHhCC
Q 028155 24 QRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF--DDKWVADSDVIVRIIEEKYP 85 (213)
Q Consensus 24 ~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~l~eS~aI~~yL~~~~~ 85 (213)
.|+.+++++..-..... .|....-|-|.+ +|..++|++||++||.+-|.
T Consensus 13 LKlalA~~~~~~~lk~~-------------v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 13 LKLALALEYAQKDLKLE-------------VNEDESGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp HHHHHHHHH--STT--E-------------E-SS--S--EEE-S--S----HHHHHHHHTT--T
T ss_pred HHHHHHHHHhCCCCeee-------------eCCccccceeeecCCceEEecccHHHHHHHhhcC
Confidence 56666666655433211 222334588864 67999999999999977655
No 148
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=91.58 E-value=0.31 Score=34.57 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.9
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINI 44 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 44 (213)
.+.||+|++++-+|...||+|+.+.+.-
T Consensus 7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 7 SPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 4569999999999999999999998854
No 149
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=91.16 E-value=0.46 Score=27.46 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=31.0
Q ss_pred cCCChhHHHHHHHHH-----HcCCCCeEEEecCCCCchhHHhhCCCCCCceEEe
Q 028155 17 LGDCPFSQRALLTLE-----EKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF 65 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~ 65 (213)
..+|++|.+++..+. ..++.+..+.++...........++...+|+++.
T Consensus 6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 6 APWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 356899999999998 3444444444433322222224677889999985
No 150
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.58 E-value=0.94 Score=28.63 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=32.1
Q ss_pred ChhHHHHHH----HHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCc
Q 028155 20 CPFSQRALL----TLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS 73 (213)
Q Consensus 20 sp~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS 73 (213)
||+|.++.- ++...|+.++...+ . ..++. .......+|+|+.||...+..
T Consensus 10 C~~C~~~~~~~~~~~~~~~i~~ei~~~--~-~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 10 CPYCPELVQLLKEAAEELGIEVEIIDI--E-DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp CTTHHHHHHHHHHHHHHTTEEEEEEET--T-THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEc--c-CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 888876555 55666766655554 2 23333 555678999999999776554
No 151
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=90.16 E-value=0.37 Score=33.41 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=25.2
Q ss_pred ccCCChhHHHHHHHHHHcCCCCeEEEecC
Q 028155 16 ILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 44 (213)
+.+.||+|++++-+|...|++|+.+.+.-
T Consensus 5 ~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred eCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 35569999999999999999999888753
No 152
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=1.7 Score=33.66 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=53.8
Q ss_pred ceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhCCCCCCceEEeCCeeecCcHHHHHH
Q 028155 2 AVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISD-KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
++.||-|... ..|.|.|++.+--.|+..|++|+...|-.++ -..-..+.+-..+.|-|-.+|..+...-.|..-
T Consensus 140 ~v~lFmKG~p----~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m 214 (227)
T KOG0911|consen 140 PVMLFMKGTP----EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEM 214 (227)
T ss_pred eEEEEecCCC----CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHH
Confidence 4667776554 3577999999999999999999888875443 112233445567899999999988876655543
No 153
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=2.9 Score=29.09 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=46.8
Q ss_pred ecCCCCCccCCChhHHHHHH----HHHHcCCCCeEEEecCCCCchhHHhhCCCC-------CCceEEe-C--CeeecCcH
Q 028155 9 AAVGAPDILGDCPFSQRALL----TLEEKKVPYKRHLINISDKPQWFMEISPEG-------KVPVVKF-D--DKWVADSD 74 (213)
Q Consensus 9 ~~~~~~~~~~~sp~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g-------~vP~L~~-~--~~~l~eS~ 74 (213)
++-++.-.-+|||.|.++.= +|+.+.-..-.+.+...+++.|--..||+. -||+|.- + ++.+.+..
T Consensus 34 gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q 113 (128)
T KOG3425|consen 34 GSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQ 113 (128)
T ss_pred cccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhH
Confidence 33334345899999987654 556666777777777777666644445543 4788773 3 35666666
Q ss_pred HHHHHHHH
Q 028155 75 VIVRIIEE 82 (213)
Q Consensus 75 aI~~yL~~ 82 (213)
.--..|..
T Consensus 114 ~~~~~Lve 121 (128)
T KOG3425|consen 114 CLNDHLVE 121 (128)
T ss_pred hhHHHHHH
Confidence 65555544
No 154
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=89.32 E-value=0.69 Score=31.93 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.6
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINI 44 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 44 (213)
.+.|++|++++-+|+..|++|+.+.+.-
T Consensus 7 ~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 7 SPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred CCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 4569999999999999999999988753
No 155
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=89.19 E-value=1.5 Score=32.60 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhC-CCCcccCCC-CCchhhhhhhhHHHHH
Q 028155 122 ALLEELKALDEHLKTH-GGPFIAGEK-VTAVDLSLAPKLYHLQ 162 (213)
Q Consensus 122 ~~~~~l~~le~~L~~~-~~~fl~G~~-~t~AD~~l~~~l~~~~ 162 (213)
.-.+.+..|++.|+.. ...|+.|+. +|-.||.+++.|.-+.
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 3566788899988854 236777765 9999999999888653
No 156
>PRK12559 transcriptional regulator Spx; Provisional
Probab=88.88 E-value=0.82 Score=32.46 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.8
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISD 46 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~ 46 (213)
.+.|+.|++++-+|...|++|+.+.+.-..
T Consensus 7 ~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 7 TASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 456999999999999999999999886443
No 157
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=88.33 E-value=2.1 Score=26.88 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=34.1
Q ss_pred cCCChhHHHHHHHHHH----cCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCe
Q 028155 17 LGDCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDK 68 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~ 68 (213)
.+|||+|..+.-.++. .+..+....++..... +..+......+|++..+|.
T Consensus 8 ~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 8 SPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred CCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCCccCCEEEECCE
Confidence 3689999988887753 3444566666665433 3344455668999998775
No 158
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=87.55 E-value=1.2 Score=30.29 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.9
Q ss_pred ccCCChhHHHHHHHHHHcCCCCeEEEecCC
Q 028155 16 ILGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (213)
Q Consensus 16 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~ 45 (213)
+.+.|+.|++++-+|.+.|++|+.+.+.-.
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~ 34 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKD 34 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccC
Confidence 356799999999999999999999987543
No 159
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=85.70 E-value=2.5 Score=27.73 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=30.2
Q ss_pred CCChhHHHHHHHHHHc-----CCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeec
Q 028155 18 GDCPFSQRALLTLEEK-----KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVA 71 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~ 71 (213)
++||+|..+.-++... ++.++.+ +..+.+ +......-..+|.++.||..+.
T Consensus 22 ~~C~~C~~~~~~~~~l~~~~~~i~~~~v--d~~~~~-e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 22 LSCHNCPDVVQALNLMAVLNPNIEHEMI--DGALFQ-DEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred CCCCCcHHHHHHHHHHHHHCCCceEEEE--EhHhCH-HHHHHcCCccCCEEEECCEEEE
Confidence 4578887766655443 3444444 433333 3344445567999998886654
No 160
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=85.34 E-value=1.5 Score=30.56 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=32.1
Q ss_pred EEEEecCCCCCccCCChhHHHHHHHH----HHcCCCCeEEEecCCCCchh------HHh--hCCCCCCceEEe--CCeee
Q 028155 5 ICVKAAVGAPDILGDCPFSQRALLTL----EEKKVPYKRHLINISDKPQW------FME--ISPEGKVPVVKF--DDKWV 70 (213)
Q Consensus 5 l~~~~~~~~~~~~~~sp~~~~v~~~l----~~~gi~~~~~~v~~~~~~~~------~~~--~~p~g~vP~L~~--~~~~l 70 (213)
|+...+.+ .-..+|||.|+++.-.+ ..+.-....+.+...+++.| |.. .-....||+|.- ++..|
T Consensus 24 l~F~gs~d-~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL 102 (119)
T PF06110_consen 24 LLFTGSKD-ETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERL 102 (119)
T ss_dssp EEEE--B--TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EE
T ss_pred EEEEccCC-CCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCcc
Confidence 33444443 34689999999887544 33322344455555443322 322 122367999983 45666
Q ss_pred cCcH
Q 028155 71 ADSD 74 (213)
Q Consensus 71 ~eS~ 74 (213)
.|..
T Consensus 103 ~e~e 106 (119)
T PF06110_consen 103 VEEE 106 (119)
T ss_dssp EHHH
T ss_pred chhh
Confidence 6653
No 161
>PHA02125 thioredoxin-like protein
Probab=83.94 E-value=3.5 Score=25.84 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=32.1
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEe
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF 65 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~ 65 (213)
.+||+.|..+.-.|+. +.++...++.... .++.+...-..+|++..
T Consensus 7 a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~~-~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 7 AEWCANCKMVKPMLAN--VEYTYVDVDTDEG-VELTAKHHIRSLPTLVN 52 (75)
T ss_pred CCCCHhHHHHHHHHHH--HhheEEeeeCCCC-HHHHHHcCCceeCeEEC
Confidence 5689999999888864 4566666665443 34555556678999983
No 162
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=83.48 E-value=2.2 Score=29.38 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=25.1
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecCC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINIS 45 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~ 45 (213)
.+.|+.|++++-+|++.|++|+.+.+.-.
T Consensus 7 ~p~C~~crkA~~~L~~~gi~~~~~d~~~~ 35 (113)
T cd03033 7 KPGCANNARQKALLEAAGHEVEVRDLLTE 35 (113)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEeehhcC
Confidence 45699999999999999999999987543
No 163
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=83.33 E-value=3.4 Score=28.72 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=27.4
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHHcCCCCeEEEecC
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINI 44 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 44 (213)
|.+|||.. +.|.-|++++-.|+..||+|+.+.+--
T Consensus 1 ~~itiy~~---------p~C~t~rka~~~L~~~gi~~~~~~y~~ 35 (117)
T COG1393 1 MMITIYGN---------PNCSTCRKALAWLEEHGIEYTFIDYLK 35 (117)
T ss_pred CeEEEEeC---------CCChHHHHHHHHHHHcCCCcEEEEeec
Confidence 55677653 337779999999999999999887753
No 164
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.85 E-value=4.8 Score=25.51 Aligned_cols=53 Identities=30% Similarity=0.221 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecCC-----------CCchhHHh--hCCCCCCceEEe-CCeeec
Q 028155 19 DCPFSQRALLTLEEKKVPYKRHLINIS-----------DKPQWFME--ISPEGKVPVVKF-DDKWVA 71 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~v~~~-----------~~~~~~~~--~~p~g~vP~L~~-~~~~l~ 71 (213)
.||-|....-.|+-.++.|+.+.+.-. +..++|.+ .|..-.||+|.. ||+++.
T Consensus 11 ~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 11 LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 489999999999999999999998643 23455643 455557899984 565544
No 165
>PRK10026 arsenate reductase; Provisional
Probab=80.74 E-value=2.8 Score=30.18 Aligned_cols=27 Identities=11% Similarity=-0.026 Sum_probs=23.4
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecC
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINI 44 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~ 44 (213)
+.|.-|++++-+|++.|++|+.+.+--
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~ 36 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE 36 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC
Confidence 448889999999999999999998743
No 166
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=76.83 E-value=2.4 Score=32.91 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhCCCCcccCCCCCchhhhhhhhHHHHHHHHhhccCCCCCccchHHHHHHHHhhcCcccc
Q 028155 124 LEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQ 194 (213)
Q Consensus 124 ~~~l~~le~~L~~~~~~fl~G~~~t~AD~~l~~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 194 (213)
...+..++..|++. +|..|..++-+|+.+|..+.- -.....+++..+|++.+.+.-+..
T Consensus 10 ~~glk~l~~sLA~k--s~~~g~~~s~edv~vf~al~~----------ep~s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEK--SYIEGYQLSKEDVVVFAALGV----------EPQSARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcc--cCCCCCCcccccceeehhccc----------CcchhhhhHHHHHHHHHHHHHHHH
Confidence 56788899999988 999999999999999865431 112245688889998887765553
No 167
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=69.41 E-value=20 Score=24.84 Aligned_cols=53 Identities=19% Similarity=0.119 Sum_probs=28.7
Q ss_pred cCCChhHHHHHHHHHH----cCCCCeEEEecCCC---Cc-----hhHHhhC----CCCCCceEEe--CCee
Q 028155 17 LGDCPFSQRALLTLEE----KKVPYKRHLINISD---KP-----QWFMEIS----PEGKVPVVKF--DDKW 69 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~---~~-----~~~~~~~----p~g~vP~L~~--~~~~ 69 (213)
.+|||+|+.+.-.|.. .++++-.+.++... .. .+|.+.. ....+|+++. +|+.
T Consensus 32 ~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 32 RKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred CCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 5789999997766633 33444444443221 11 1333332 2345999984 6643
No 168
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=60.43 E-value=20 Score=25.21 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=23.4
Q ss_pred CCChhHHHHHHHHHHcCCCCeEEEecC
Q 028155 18 GDCPFSQRALLTLEEKKVPYKRHLINI 44 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi~~~~~~v~~ 44 (213)
+.|.-|++++-.|++.|++|+.+.+--
T Consensus 9 p~Cst~RKA~~~L~~~gi~~~~~d~~~ 35 (126)
T TIGR01616 9 PGCANNARQKAALKASGHDVEVQDILK 35 (126)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeccC
Confidence 448889999999999999999998743
No 169
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=57.74 E-value=14 Score=25.12 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=30.8
Q ss_pred cCCChhHHHHHHHHHHcCCC---CeEEEecCCCCchhHHhhCCCCCCceEEe
Q 028155 17 LGDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF 65 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~g~vP~L~~ 65 (213)
-+|||+|..++-+++...-. ++...++... .+++.....-..+|++..
T Consensus 31 a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 31 KEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGVERVPTTIF 81 (113)
T ss_pred CCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCCCcCCEEEE
Confidence 35899999888877644422 2344455443 345555566778999985
No 170
>PRK10853 putative reductase; Provisional
Probab=56.30 E-value=17 Score=25.24 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.3
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEec
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLIN 43 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~ 43 (213)
.+.|.-|++++-+|++.|++|+.+.+-
T Consensus 7 ~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 7 IKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 345888999999999999999988774
No 171
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=55.06 E-value=17 Score=24.86 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=23.4
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEec
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLIN 43 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~ 43 (213)
.+.|.-|++++-+|+..|++|+.+.+.
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 6 NPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 455888999999999999999988764
No 172
>PRK09266 hypothetical protein; Provisional
Probab=54.09 E-value=19 Score=28.57 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=43.2
Q ss_pred HHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhCCC
Q 028155 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPE 86 (213)
Q Consensus 29 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~~~ 86 (213)
.+...|+++++..++..+ ..+.|+..+-.|-+|+-..++..+.++..|.+.|.+.+..
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHh
Confidence 456779999999998765 3344666666699999999888876667888888776643
No 173
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.43 E-value=25 Score=28.21 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHcCCCCeEEEecCCC-CchhHHhhC----CCCCCceEEeCCeeecCcHHHHHH
Q 028155 22 FSQRALLTLEEKKVPYKRHLINISD-KPQWFMEIS----PEGKVPVVKFDDKWVADSDVIVRI 79 (213)
Q Consensus 22 ~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~g~vP~L~~~~~~l~eS~aI~~y 79 (213)
-|..||.+|+--+|-|+++.|++.. ..+|+..+- -.-.+|.+-.+|..|.....|++-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 4899999999999999999999975 334443322 235689777899998888877664
No 174
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=52.28 E-value=31 Score=23.61 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=23.9
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEecC
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLINI 44 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 44 (213)
.+.|+-|++++-.|+..|++|+.+.+.-
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~ 33 (114)
T TIGR00014 6 NPRCSKSRNTLALLEDKGIEPEVVKYLK 33 (114)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeccC
Confidence 3458889999999999999999887753
No 175
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=51.54 E-value=21 Score=21.52 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=20.4
Q ss_pred CceEEEEEecCCCCCccCCChhHHHHHHHHHH
Q 028155 1 MAVEICVKAAVGAPDILGDCPFSQRALLTLEE 32 (213)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~~sp~~~~v~~~l~~ 32 (213)
|...||..-..++ +|.||+||-.+|..
T Consensus 1 ~~mKLYRfiTGpD-----DssFChrvta~LN~ 27 (70)
T COG5515 1 MKMKLYRFITGPD-----DSSFCHRVTAALNK 27 (70)
T ss_pred CcceeeEeecCCc-----hHHHHHHHHHHHhC
Confidence 5667788776655 47899999988853
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=51.20 E-value=33 Score=30.60 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=30.8
Q ss_pred CCChhHHHHHH----HHHHc-CCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecC
Q 028155 18 GDCPFSQRALL----TLEEK-KVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVAD 72 (213)
Q Consensus 18 ~~sp~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~e 72 (213)
+.||||-.+.- ++.+. +|..+.+.+.. .+ +..+...-..+|.++.||+.++.
T Consensus 486 ~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~--~~-~~~~~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 486 LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH--FP-DLKDEYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCceEEEEECcc--cH-HHHHhCCceecCEEEECCEEEEe
Confidence 35777655444 33444 56666665543 22 34444556789999998865443
No 177
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=50.69 E-value=16 Score=24.79 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=20.6
Q ss_pred cCCChhHHHHHHHHHHcCCCCeEEEec
Q 028155 17 LGDCPFSQRALLTLEEKKVPYKRHLIN 43 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~~~~~~v~ 43 (213)
.+.|.-|++++-+|++.|++|+.+.+.
T Consensus 3 ~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 467999999999999999999988774
No 178
>PHA02278 thioredoxin-like protein
Probab=48.52 E-value=80 Score=21.11 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=31.5
Q ss_pred cCCChhHHHHHHHHHHc----CCCCeEEEecCCCC---chhHHhhCCCCCCceEEe--CCeee
Q 028155 17 LGDCPFSQRALLTLEEK----KVPYKRHLINISDK---PQWFMEISPEGKVPVVKF--DDKWV 70 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~----gi~~~~~~v~~~~~---~~~~~~~~p~g~vP~L~~--~~~~l 70 (213)
-+||+-|+.+.-.++.. +.......++.... .+++.+..--..+|++.. +|+.+
T Consensus 23 A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 23 QDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred CCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 46899998777655433 22223444554432 234445555678999984 77554
No 179
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.23 E-value=16 Score=23.29 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHcCCCCeEEEecCC
Q 028155 21 PFSQRALLTLEEKKVPYKRHLINIS 45 (213)
Q Consensus 21 p~~~~v~~~l~~~gi~~~~~~v~~~ 45 (213)
.|++|+.-+++..|++|+..+-..+
T Consensus 16 GF~rk~L~I~E~~~is~Eh~PSGID 40 (76)
T cd04911 16 GFGRKLLSILEDNGISYEHMPSGID 40 (76)
T ss_pred cHHHHHHHHHHHcCCCEeeecCCCc
Confidence 3999999999999999999876544
No 180
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=46.88 E-value=72 Score=21.74 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=25.6
Q ss_pred cCCChhHHHHHHHH-------HHcCCCCeEEEecCCCC------------chhHHhhCCCCCCceEE
Q 028155 17 LGDCPFSQRALLTL-------EEKKVPYKRHLINISDK------------PQWFMEISPEGKVPVVK 64 (213)
Q Consensus 17 ~~~sp~~~~v~~~l-------~~~gi~~~~~~v~~~~~------------~~~~~~~~p~g~vP~L~ 64 (213)
-+|||+|++..-.+ ...+-.+....++.... ..++........+|+++
T Consensus 23 a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 23 QPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred CCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 45799999875322 11111344555555432 13343444456788877
No 181
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=46.61 E-value=69 Score=20.95 Aligned_cols=47 Identities=9% Similarity=-0.132 Sum_probs=28.0
Q ss_pred cCCChhHHHHHHHH--------HHcCCCCeEEEecCCCC---chhHHhhCCCCCCceEE
Q 028155 17 LGDCPFSQRALLTL--------EEKKVPYKRHLINISDK---PQWFMEISPEGKVPVVK 64 (213)
Q Consensus 17 ~~~sp~~~~v~~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~g~vP~L~ 64 (213)
-+||++|.+..-.+ ...+ .+....++.... ..++........+|++.
T Consensus 20 a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 20 ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 46899998876433 2222 455555665432 23455555567899887
No 182
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=41.66 E-value=96 Score=20.02 Aligned_cols=53 Identities=21% Similarity=0.163 Sum_probs=30.8
Q ss_pred cCCChhHHHHHHHHHH----cCCCCeEEEecCCCCchhHHhhCCCCCCceEEe--CCeee
Q 028155 17 LGDCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVKF--DDKWV 70 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~l 70 (213)
-+||+.|....-.++. .+-.+....++.... +++....--..+|++.. +|+.+
T Consensus 22 a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 22 SPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-QEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred CCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-HHHHHHCCCeeccEEEEEECCeEE
Confidence 3689999988777744 111344455555443 33444444568998873 66443
No 183
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=40.47 E-value=1.4e+02 Score=26.30 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=30.5
Q ss_pred CCChhHHHHHHHHHHcCC---CCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCc
Q 028155 18 GDCPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS 73 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS 73 (213)
+.||||-.+.-+++...+ .++...++-...+ ++.+......||.+..++..+++.
T Consensus 127 ~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~-~~~~~~~v~~VP~~~i~~~~~~~g 184 (515)
T TIGR03140 127 LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ-DEVEALGIQGVPAVFLNGEEFHNG 184 (515)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH-HHHHhcCCcccCEEEECCcEEEec
Confidence 346666665555544333 2333334433333 344444566899999888666654
No 184
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=39.58 E-value=1.3e+02 Score=26.43 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=35.4
Q ss_pred CCChhHHHHHHHHHHcCC---CCeEEEecCCCCchhHHhhCCCCCCceEEeCCeeecCc----HHHHHHHHHh
Q 028155 18 GDCPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADS----DVIVRIIEEK 83 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l~eS----~aI~~yL~~~ 83 (213)
+.||||-.+.-+++...+ .++...++-... +++.+...-..||.+..++..+++. ..|+..+...
T Consensus 126 ~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~-~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 126 LSCHNCPDVVQALNLMAVLNPNITHTMIDGALF-QDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC-HhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhcc
Confidence 456776665555433333 344444443333 3344555567899999888665553 3445555443
No 185
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=39.57 E-value=89 Score=19.05 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCChhHHHHHHHHHH-----cCCCCeEEEecCCCCchhHHhhCCCCCCceEEe--CCe
Q 028155 18 GDCPFSQRALLTLEE-----KKVPYKRHLINISDKPQWFMEISPEGKVPVVKF--DDK 68 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~ 68 (213)
++|++|....-.+.. .++.+ ..++... ...+........+|++.. +|.
T Consensus 20 ~~C~~C~~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 20 PWCGPCKAIAPVLEELAEEYPKVKF--VKVDVDE-NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CCChhHHHhhHHHHHHHHHCCCceE--EEEECCC-ChhHHHhcCcccccEEEEEECCE
Confidence 469999888887766 44444 3444433 233444445567999874 554
No 186
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=39.29 E-value=86 Score=19.96 Aligned_cols=52 Identities=15% Similarity=-0.018 Sum_probs=30.8
Q ss_pred cCCChhHHHHHHHHHHc----CCCCeEEEecCCCCchhHHhhCCCCCCceEEe--CCee
Q 028155 17 LGDCPFSQRALLTLEEK----KVPYKRHLINISDKPQWFMEISPEGKVPVVKF--DDKW 69 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~ 69 (213)
.+||+.|+++.-.++.. ...+....++....+ ++.+......+|++.. +|..
T Consensus 23 ~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 23 APWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-EISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred CCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-HHHHhcCCccccEEEEEECCEE
Confidence 46799999887766432 334555555554433 3434334567998873 6644
No 187
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=39.14 E-value=1e+02 Score=19.63 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=40.2
Q ss_pred cCCChhHHHHHHHH-----HHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEe--CCeee------cCcHHHHHHHHH
Q 028155 17 LGDCPFSQRALLTL-----EEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKF--DDKWV------ADSDVIVRIIEE 82 (213)
Q Consensus 17 ~~~sp~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~l------~eS~aI~~yL~~ 82 (213)
-+||+.|....-.+ .+.+ ++....++.... ..+.+......+|.+.. +|... .+...|..+|.+
T Consensus 26 ~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 26 APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CCCCCccccccceeccccccccc-ccccchhhhhcc-chhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 35799998887554 2332 667777777654 34555556788999983 66432 234566666654
No 188
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=38.31 E-value=62 Score=24.75 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=29.8
Q ss_pred cCCChhHHHHHHHHHHcCC---CCeEEEecCCCCchhHHhhCCCCCCceEEeC
Q 028155 17 LGDCPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVKFD 66 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~ 66 (213)
-+|||+|..+.-+++..-- .+....++.... ++......-..+|+++.+
T Consensus 142 a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 142 TPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-PDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-HHHHHHhCCccCCEEEEe
Confidence 4679999988877754322 233344555443 334444556679999963
No 189
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=34.30 E-value=1.5e+02 Score=20.26 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=28.1
Q ss_pred cCCChhHHHHHHHHHH------cCCCCeEEEecCCCCchhHHhhCCCC-CCceEEe---CCeeec
Q 028155 17 LGDCPFSQRALLTLEE------KKVPYKRHLINISDKPQWFMEISPEG-KVPVVKF---DDKWVA 71 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~g-~vP~L~~---~~~~l~ 71 (213)
-.||+.|+...-.+.. .+..|..+.++..... .-...+..| .+|+++. +|..+.
T Consensus 28 a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~-~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 28 KTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP-KDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred CCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc-hhhhcccCCCccceEEEECCCCCCch
Confidence 4589999888665544 2234444444432211 112234443 4999983 555543
No 190
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=32.89 E-value=1.6e+02 Score=19.91 Aligned_cols=55 Identities=16% Similarity=0.011 Sum_probs=33.9
Q ss_pred cCCChhHHHHHHHHHHcCC---CCeEEEecCCCCchhHHhhCCCCCCceEEe--CCeeecC
Q 028155 17 LGDCPFSQRALLTLEEKKV---PYKRHLINISDKPQWFMEISPEGKVPVVKF--DDKWVAD 72 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~l~e 72 (213)
-+||+-|+.+.-.++...- .+....++.... ++..+...-..+|++.. +|+.+..
T Consensus 31 a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 31 HPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-PFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-HHHHHHCCCccCCEEEEEECCEEEEE
Confidence 4678999888776644221 234455665443 33455556778999984 7776553
No 191
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=31.89 E-value=42 Score=26.27 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=38.8
Q ss_pred HHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeee--cCcHHHHHHHHHh
Q 028155 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWV--ADSDVIVRIIEEK 83 (213)
Q Consensus 29 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l--~eS~aI~~yL~~~ 83 (213)
.++..|+++++..++..+ ..+.|+..+..|-+|+-..++..+ .....|.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 567789999999887654 334455555668899999888766 4556777776543
No 192
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=31.77 E-value=1.8e+02 Score=20.17 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=37.1
Q ss_pred eEEEEEecCCCCCccCCChhHHHHHHHH----HHcCCCCeEEEecCCCC------chhHHhhCCCC-CCceEEe--CCee
Q 028155 3 VEICVKAAVGAPDILGDCPFSQRALLTL----EEKKVPYKRHLINISDK------PQWFMEISPEG-KVPVVKF--DDKW 69 (213)
Q Consensus 3 ~~l~~~~~~~~~~~~~~sp~~~~v~~~l----~~~gi~~~~~~v~~~~~------~~~~~~~~p~g-~vP~L~~--~~~~ 69 (213)
+-++..++.++ -..+|||.|+.+.-.+ ....-.+....|+..+. ..++....-.. .+|++.. ++..
T Consensus 24 vvV~F~A~~~~-~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 24 IFILFYGDKDP-DGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQR 102 (119)
T ss_pred EEEEEEccCCC-CCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCce
Confidence 33444554443 4578999999776544 33222344555665432 23343322223 7999984 5555
Q ss_pred ecCc
Q 028155 70 VADS 73 (213)
Q Consensus 70 l~eS 73 (213)
+.|.
T Consensus 103 l~~~ 106 (119)
T cd02952 103 LVED 106 (119)
T ss_pred ecch
Confidence 4443
No 193
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=30.82 E-value=1.9e+02 Score=20.15 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=35.0
Q ss_pred cCCChhHHHHHH-------HHHHcCCCCeEEEecCCCCchh---HHh----hCCCCCCceEEe---CCeeecCc
Q 028155 17 LGDCPFSQRALL-------TLEEKKVPYKRHLINISDKPQW---FME----ISPEGKVPVVKF---DDKWVADS 73 (213)
Q Consensus 17 ~~~sp~~~~v~~-------~l~~~gi~~~~~~v~~~~~~~~---~~~----~~p~g~vP~L~~---~~~~l~eS 73 (213)
-.||++|++..- +.....-.|..+.++.+..++. +.+ .+..+..|+++. +|..+..+
T Consensus 24 a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 24 YSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred cCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 457999998743 2233344677788877654321 211 234567899884 67777766
No 194
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=30.74 E-value=77 Score=17.09 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=20.5
Q ss_pred CCCCceEEeCCeeecCcHHHHHHHH
Q 028155 57 EGKVPVVKFDDKWVADSDVIVRIIE 81 (213)
Q Consensus 57 ~g~vP~L~~~~~~l~eS~aI~~yL~ 81 (213)
.|.+|....++..++....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4789988778888888888888875
No 195
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=29.60 E-value=1.7e+02 Score=19.45 Aligned_cols=52 Identities=10% Similarity=0.016 Sum_probs=29.7
Q ss_pred cCCChhHHHHHHHH-----HHcCCCCeEEEecCCCCchhHHhhCCCCCCceEE--eCCee
Q 028155 17 LGDCPFSQRALLTL-----EEKKVPYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKW 69 (213)
Q Consensus 17 ~~~sp~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~--~~~~~ 69 (213)
-+||+.|+...-.+ ++.+..+....++.... +.......-..+|++. .+|..
T Consensus 33 a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 33 SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred CCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHHHHcCCccCCEEEEEECCEE
Confidence 46899997665443 33333445555555432 2344445567899987 36643
No 196
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=29.58 E-value=1.9e+02 Score=19.89 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=32.0
Q ss_pred cCCChhHHHHHHHHHHcCCC----CeEEEecCCCCchhHHhhCCCCCCceEEe--CCee
Q 028155 17 LGDCPFSQRALLTLEEKKVP----YKRHLINISDKPQWFMEISPEGKVPVVKF--DDKW 69 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~ 69 (213)
-.||+-|+.+.-.++..--. .....|+....+ ++.....-..+|++.. +|+.
T Consensus 23 A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 23 RDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-DFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred CCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEE
Confidence 46899999887666433322 344566665543 4545555567999984 6644
No 197
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=28.59 E-value=35 Score=27.42 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=39.1
Q ss_pred HHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeee----cCcHHHHHHHHHhC
Q 028155 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWV----ADSDVIVRIIEEKY 84 (213)
Q Consensus 29 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l----~eS~aI~~yL~~~~ 84 (213)
.++..|+++++..+...+ ..+.|+..+..|-+|+-..++..+ .....|++.|.+.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEEEEccccccCCCCCCCHHHHHHHHHH
Confidence 567789999999987754 333455556668899999888766 45566666665543
No 198
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=27.10 E-value=2.2e+02 Score=23.70 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=15.9
Q ss_pred ecCcHHHHHHHHHhCCCCCCC
Q 028155 70 VADSDVIVRIIEEKYPEPSLT 90 (213)
Q Consensus 70 l~eS~aI~~yL~~~~~~~~l~ 90 (213)
|.--..|.+||++.+...+..
T Consensus 58 IVAyQTIsDYLDNLcDrs~~~ 78 (330)
T PF10776_consen 58 IVAYQTISDYLDNLCDRSTSL 78 (330)
T ss_pred HHHHHHHHHHHHhhhhccCCC
Confidence 455578999999999865544
No 199
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=26.74 E-value=94 Score=22.63 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=23.4
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecCCCCchh
Q 028155 19 DCPFSQRALLTLEEKKVPYKRHLINISDKPQW 50 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~ 50 (213)
+-+++.+++-.|++.|++|+......-..+++
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~ 43 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVASAHRTPER 43 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHH
Confidence 35899999999999999999888776554443
No 200
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=26.45 E-value=60 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=19.9
Q ss_pred CceEE-eCCeeecCcHHHHHHHHHhCC
Q 028155 60 VPVVK-FDDKWVADSDVIVRIIEEKYP 85 (213)
Q Consensus 60 vP~L~-~~~~~l~eS~aI~~yL~~~~~ 85 (213)
+|.+. .+|.++++|..|++++...+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45555 689999999999998766543
No 201
>PTZ00051 thioredoxin; Provisional
Probab=26.16 E-value=1.8e+02 Score=18.46 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=29.6
Q ss_pred cCCChhHHHHHHHHHHcC---CCCeEEEecCCCCchhHHhhCCCCCCceEEe--CCee
Q 028155 17 LGDCPFSQRALLTLEEKK---VPYKRHLINISDKPQWFMEISPEGKVPVVKF--DDKW 69 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~g---i~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~ 69 (213)
.+||+.|+...-.++... ..+....++... ...+.+......+|+++. +|..
T Consensus 27 ~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 27 AEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred CCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCCceeeEEEEEeCCeE
Confidence 457999988766554421 223444455443 233445555678998873 5543
No 202
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=25.88 E-value=1.8e+02 Score=18.46 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=30.9
Q ss_pred cCCChhHHHHHHHHHHcCC----CCeEEEecCCCCchhHHhhCCCCCCceEE--eCCee
Q 028155 17 LGDCPFSQRALLTLEEKKV----PYKRHLINISDKPQWFMEISPEGKVPVVK--FDDKW 69 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~g~vP~L~--~~~~~ 69 (213)
-+||+.|....-.++...- .+....++.... +.+.....-..+|+++ .+|..
T Consensus 21 a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 21 APRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-PQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-HHHHHHcCCCCCCEEEEEeCCEE
Confidence 4579999887766643221 244455555443 3444445567899998 36643
No 203
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=25.85 E-value=2e+02 Score=18.83 Aligned_cols=53 Identities=17% Similarity=0.026 Sum_probs=30.2
Q ss_pred cCCChhHHHHHHHHHHcC---CCCeEEEecCCCCc--hhHHhhCCCCCCceEEe--CCee
Q 028155 17 LGDCPFSQRALLTLEEKK---VPYKRHLINISDKP--QWFMEISPEGKVPVVKF--DDKW 69 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~g---i~~~~~~v~~~~~~--~~~~~~~p~g~vP~L~~--~~~~ 69 (213)
-+||+.|+...-.++... -.+....++....+ .++.+...-..+|++.. +|..
T Consensus 24 a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 24 LKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred CCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence 458999987765553321 12344555554432 24555555677998874 6644
No 204
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=24.67 E-value=63 Score=26.28 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeec--CcHHHHHHHHH
Q 028155 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVA--DSDVIVRIIEE 82 (213)
Q Consensus 29 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~--eS~aI~~yL~~ 82 (213)
.+...|+++++..+...+ ..+-|+.....|-+|+-..++..+. .+..|.+-|.+
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~~id~~~~~~g~~g~~~~~L~~ 286 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKLQS 286 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECcEECCCCCCCHHHHHHHH
Confidence 567889999999887754 3344566666788999998887764 33455554443
No 205
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=24.54 E-value=2.2e+02 Score=18.93 Aligned_cols=63 Identities=21% Similarity=0.417 Sum_probs=36.8
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecCCCC-chhHH---hhC---CCCCCceEEeCCe-eecCcHHHHHHHHH
Q 028155 19 DCPFSQRALLTLEEKKVPYKRHLINISDK-PQWFM---EIS---PEGKVPVVKFDDK-WVADSDVIVRIIEE 82 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~---~~~---p~g~vP~L~~~~~-~l~eS~aI~~yL~~ 82 (213)
.||+|.+..-.+......-....++..+. ..+.+ .++ ....+ .+..+|. .+.++.|+.+-+..
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRL-HLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCee-EEecCCCEEEEcHHHHHHHHHH
Confidence 59999888888877765444455554221 11111 111 12333 3345665 99999998887655
No 206
>PRK13356 aminotransferase; Provisional
Probab=23.63 E-value=66 Score=25.85 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHh
Q 028155 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEK 83 (213)
Q Consensus 29 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~ 83 (213)
.++..|+++++..++..+ ..+.|+..+..+-+|+-..++..+. ...|.+.|.+.
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~~id~~~~~-~g~~~~~l~~~ 277 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVTRFDDRSLQ-PGPVTRRAREL 277 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEEEECCEEec-CChHHHHHHHH
Confidence 567889999999988654 3344666566688899998887663 34565555443
No 207
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.38 E-value=1.7e+02 Score=21.54 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=25.2
Q ss_pred CChhHHHHHHHHHHcCCCCeEEEecCCCCc
Q 028155 19 DCPFSQRALLTLEEKKVPYKRHLINISDKP 48 (213)
Q Consensus 19 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~ 48 (213)
+-|.++++...|+..||+|+....+.-..+
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaHRtp 39 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAHRTP 39 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcccCH
Confidence 358899999999999999999988765543
No 208
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=23.15 E-value=89 Score=24.75 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=37.7
Q ss_pred HHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecCcHHHHHHHHHhC
Q 028155 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIIEEKY 84 (213)
Q Consensus 29 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~eS~aI~~yL~~~~ 84 (213)
.++..|+++++..+...+ ..+.|+...-.|-+|+...++..+ ++..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~~id~~~~-~~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIGETSY-SSGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEEEECCEEc-cchHHHHHHHHHH
Confidence 456779999999987654 233455555568899999888765 3456666665543
No 209
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=22.72 E-value=77 Score=25.61 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=37.1
Q ss_pred HHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeecC--cHHHHHHHHH
Q 028155 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVAD--SDVIVRIIEE 82 (213)
Q Consensus 29 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~e--S~aI~~yL~~ 82 (213)
.+...|+++++..+++.+ ..+-|+.....|-+|+-..++..+.. ...|.+-|.+
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~~id~~~~~~~~~g~~~~~l~~ 278 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIREVDGRKIGNGRRGPVTKKLQE 278 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEEEECCEECCCCCCChHHHHHHH
Confidence 567889999999988754 23345666667899999988876642 3445444443
No 210
>PHA03158 hypothetical protein; Provisional
Probab=22.30 E-value=3.6e+02 Score=20.58 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=41.9
Q ss_pred CC-eeecCcHHHHHHHHHhCCCCCCCCChHHHhhhccchHHHHHhhcCCCCCchHHHHHHHHHHHHHHHhh
Q 028155 66 DD-KWVADSDVIVRIIEEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLK 135 (213)
Q Consensus 66 ~~-~~l~eS~aI~~yL~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~ 135 (213)
+| .++++|....+-|.+.-+.=-.....+.+.+.+.+..+....+.+ .+...++.+.++.||+.++
T Consensus 205 nG~~V~y~sLpf~ERl~Rs~pPWCv~t~~EK~~~~kQllka~kkc~~~----s~~~~~leeei~eleks~a 271 (273)
T PHA03158 205 NGKHVRFDDLPFMERIKRSGPPWCIKTAKEKAAILKQLLKAAKKCCKN----SEHEKELEEEIEELEKSLA 271 (273)
T ss_pred cCEEEEeccCcHHHHHhccCCCcEeecHHHhHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHhhc
Confidence 44 789999988888777544211223455666666666655555543 3445677888888887765
No 211
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=22.27 E-value=90 Score=25.00 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=37.9
Q ss_pred HHHHcCCCCeEEEecCCC---CchhHHhhCCCCCCceEEeCCeeec-CcHHHHHHHHHh
Q 028155 29 TLEEKKVPYKRHLINISD---KPQWFMEISPEGKVPVVKFDDKWVA-DSDVIVRIIEEK 83 (213)
Q Consensus 29 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~g~vP~L~~~~~~l~-eS~aI~~yL~~~ 83 (213)
.++..|+++++..+...+ ..+.|+..+..|.+|+...++..+. ....|...|.+.
T Consensus 212 ~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~~i~~~~~~g~~g~~~~~l~~~ 270 (283)
T PRK07650 212 VLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLTRIEERDFPGKVGMVTKRLQNL 270 (283)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEEEECCEEeCCCCCHHHHHHHHH
Confidence 567889999999887654 3344666666799999998887763 234555555443
No 212
>PF12728 HTH_17: Helix-turn-helix domain
Probab=21.82 E-value=1.6e+02 Score=16.41 Aligned_cols=26 Identities=31% Similarity=0.587 Sum_probs=21.9
Q ss_pred CCCCceEEeCCeeecCcHHHHHHHHH
Q 028155 57 EGKVPVVKFDDKWVADSDVIVRIIEE 82 (213)
Q Consensus 57 ~g~vP~L~~~~~~l~eS~aI~~yL~~ 82 (213)
.|.+|.+..++...+.-..|-+|+.+
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 24 QGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred cCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 47898888888888888899999875
No 213
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=21.80 E-value=2.5e+02 Score=18.72 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=29.9
Q ss_pred cCCChhHHHHHHHHHHcCCC---CeEEEecCCCCchhHHhhCCCCCCceEEe--CCeeecC
Q 028155 17 LGDCPFSQRALLTLEEKKVP---YKRHLINISDKPQWFMEISPEGKVPVVKF--DDKWVAD 72 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~l~e 72 (213)
-+||+.|..+.-.++...-. +....++.... ++.....-..+|++.. +|+.+..
T Consensus 33 a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 33 EPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 35788888776655432211 23344544432 4444444578999984 7765443
No 214
>PRK09381 trxA thioredoxin; Provisional
Probab=20.55 E-value=2.6e+02 Score=18.23 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=30.8
Q ss_pred cCCChhHHHHHHHHHH----cCCCCeEEEecCCCCchhHHhhCCCCCCceEEe--CCeee
Q 028155 17 LGDCPFSQRALLTLEE----KKVPYKRHLINISDKPQWFMEISPEGKVPVVKF--DDKWV 70 (213)
Q Consensus 17 ~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~--~~~~l 70 (213)
-+|||.|+...-.++. .+-.+....++...... +........+|+++. +|+.+
T Consensus 30 ~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 30 AEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG-TAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred CCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh-HHHhCCCCcCCEEEEEeCCeEE
Confidence 4579999887654432 22235556666654333 334445678999873 66543
No 215
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=20.39 E-value=45 Score=20.80 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHcCCCCeEEEecCCCCchhHHhhCCCCCCceEEeCCeee
Q 028155 22 FSQRALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWV 70 (213)
Q Consensus 22 ~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~g~vP~L~~~~~~l 70 (213)
.+.++.-++.+.+||-.. -..+|+|.++++.+
T Consensus 19 ~~k~lKk~~~e~kIP~~~-----------------R~~~Pll~~~~~iv 50 (74)
T PF11734_consen 19 GSKKLKKLFQEAKIPPWQ-----------------RDRLPLLCDGGEIV 50 (74)
T ss_dssp SEEEHHHHHHHCT--HHH-----------------CCCSEEEEETTEEE
T ss_pred CCchHHHHHHHcCCCHHH-----------------HCcEEEEEECCEEE
Confidence 345566666666666322 14688888877654
No 216
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=20.33 E-value=1.1e+02 Score=22.83 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=12.4
Q ss_pred CCChhHHHHHHHHHH
Q 028155 18 GDCPFSQRALLTLEE 32 (213)
Q Consensus 18 ~~sp~~~~v~~~l~~ 32 (213)
+.||||++..-.+..
T Consensus 87 ~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 87 PDCPYCRKLEKELKP 101 (197)
T ss_pred CCCccHHHHHHHHhh
Confidence 469999999888864
Done!