Your job contains 1 sequence.
>028156
MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP
RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ
QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH
LKKCSTCGSVFGQAQTQSDEPSATNRKRKTTDA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028156
(213 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014124 - symbol:AT1G18340 species:3702 "Arabi... 880 4.1e-88 1
DICTYBASE|DDB_G0275517 - symbol:gtf2h3 "general transcrip... 436 4.6e-41 1
UNIPROTKB|G3X6N2 - symbol:GTF2H3 "General transcription f... 377 8.3e-35 1
UNIPROTKB|Q05B56 - symbol:GTF2H3 "General transcription f... 377 8.3e-35 1
FB|FBgn0031309 - symbol:Tfb4 "Tfb4" species:7227 "Drosoph... 376 1.1e-34 1
UNIPROTKB|F1RFL7 - symbol:GTF2H3 "Uncharacterized protein... 376 1.1e-34 1
UNIPROTKB|F1NGC7 - symbol:GTF2H3 "Uncharacterized protein... 374 1.7e-34 1
UNIPROTKB|B4DNZ6 - symbol:GTF2H3 "cDNA FLJ53013, highly s... 374 1.7e-34 1
UNIPROTKB|Q13889 - symbol:GTF2H3 "General transcription f... 374 1.7e-34 1
MGI|MGI:1277143 - symbol:Gtf2h3 "general transcription fa... 371 3.6e-34 1
RGD|1305494 - symbol:Gtf2h3 "general transcription factor... 368 7.4e-34 1
ZFIN|ZDB-GENE-040718-302 - symbol:gtf2h3 "general transcr... 358 8.5e-33 1
POMBASE|SPBC30B4.07c - symbol:tfb4 "transcription factor ... 326 2.1e-29 1
ASPGD|ASPL0000052286 - symbol:AN0138 species:162425 "Emer... 307 2.2e-27 1
CGD|CAL0005890 - symbol:orf19.4194 species:5476 "Candida ... 257 5.1e-26 2
UNIPROTKB|Q59NH6 - symbol:TFB4 "Putative uncharacterized ... 257 5.1e-26 2
UNIPROTKB|F5GWD3 - symbol:GTF2H3 "General transcription f... 238 2.7e-25 2
SGD|S000006260 - symbol:TFB4 "Subunit of TFIIH complex" s... 249 3.0e-21 1
UNIPROTKB|H0YFF7 - symbol:GTF2H3 "General transcription f... 248 3.9e-21 1
WB|WBGene00014230 - symbol:ZK1128.4 species:6239 "Caenorh... 204 1.8e-16 1
UNIPROTKB|F5GX35 - symbol:GTF2H3 "General transcription f... 144 8.3e-10 1
UNIPROTKB|F5H4K7 - symbol:GTF2H3 "General transcription f... 123 4.0e-06 1
UNIPROTKB|F5GXG6 - symbol:GTF2H3 "General transcription f... 105 0.00039 1
>TAIR|locus:2014124 [details] [associations]
symbol:AT1G18340 species:3702 "Arabidopsis thaliana"
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=RCA] InterPro:IPR004600
Pfam:PF03850 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006355
GO:GO:0006281 GO:GO:0003743 GO:GO:0000439 eggNOG:COG5242
HOGENOM:HOG000175900 KO:K03143 PANTHER:PTHR12831 OMA:NAHLMQK
EMBL:AY085062 EMBL:BT025174 IPI:IPI00532419 RefSeq:NP_564050.1
UniGene:At.41799 ProteinModelPortal:Q8LF41 IntAct:Q8LF41
STRING:Q8LF41 EnsemblPlants:AT1G18340.1 GeneID:838415
KEGG:ath:AT1G18340 TAIR:At1g18340 InParanoid:Q8LF41
PhylomeDB:Q8LF41 ProtClustDB:CLSN2687852 Genevestigator:Q8LF41
Uniprot:Q8LF41
Length = 301
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 165/210 (78%), Positives = 185/210 (88%)
Query: 1 MPSLCATLLQNLEEFMNKDEQLGKQE-PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ 59
MP++ +LL+ LEEF+ KDE+L K+E E RI LLSGSLSMALCYIQRVFRSG LHPQ
Sbjct: 89 MPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQ 148
Query: 60 PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 119
PRILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCY+G QNSAFLQQASYITGGVHH P
Sbjct: 149 PRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTP 208
Query: 120 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 179
+QLDGLFQYL TIF TDLHSR F+QLPKP+GVDFRASCFCHK TIDMGYICSVCLSI+C+
Sbjct: 209 KQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCE 268
Query: 180 HLKKCSTCGSVFGQAQTQSDEPSATNRKRK 209
H KKCSTCGSVFGQ++ D SA+++KRK
Sbjct: 269 HHKKCSTCGSVFGQSKLD-DASSASDKKRK 297
>DICTYBASE|DDB_G0275517 [details] [associations]
symbol:gtf2h3 "general transcription factor IIH,
polypeptide 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0007070 "negative regulation
of transcription from RNA polymerase II promoter during mitosis"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
dictyBase:DDB_G0275517 GO:GO:0046872 GO:GO:0006281
GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0006367
GO:GO:0005675 GO:GO:0007070 GO:GO:0000439 eggNOG:COG5242 KO:K03143
PANTHER:PTHR12831 RefSeq:XP_643618.1 STRING:Q86IB5
EnsemblProtists:DDB0230196 GeneID:8620205 KEGG:ddi:DDB_G0275517
OMA:NAHIANN ProtClustDB:CLSZ2846874 Uniprot:Q86IB5
Length = 372
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 84/161 (52%), Positives = 108/161 (67%)
Query: 31 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 90
I S S S+S+ALCYI R+ R +PRIL SPD QY+++MN IFS+Q+ +
Sbjct: 185 ILSSSFSASMSIALCYINRIKRETPTI-KPRILVFNISPDVSSQYISVMNCIFSSQKQSI 243
Query: 91 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 150
P+DSC L +S FLQQAS++T G++ KPQ+ + L QYLLT F D SR L P
Sbjct: 244 PVDSCILSQSDSTFLQQASHLTSGIYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKS 303
Query: 151 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
VD+RASCFCHK +D+GY+CSVCLSI+C H CSTCG+ F
Sbjct: 304 VDYRASCFCHKRIVDIGYVCSVCLSIFCGHSSSCSTCGTKF 344
>UNIPROTKB|G3X6N2 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9913 "Bos taurus" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 GO:GO:0006366 GO:GO:0008353
GO:GO:0008094 GO:GO:0000439 PANTHER:PTHR12831 TIGRFAMs:TIGR00627
OMA:NAHLMQK GeneTree:ENSGT00390000013143 EMBL:DAAA02045235
Ensembl:ENSBTAT00000009561 Uniprot:G3X6N2
Length = 305
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 78/170 (45%), Positives = 111/170 (65%)
Query: 24 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 81
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 118 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 177
Query: 82 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 141
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 178 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 236
Query: 142 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 237 QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 286
>UNIPROTKB|Q05B56 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9913 "Bos taurus" [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004600 Pfam:PF03850 GO:GO:0006355 GO:GO:0046872
GO:GO:0006281 GO:GO:0006366 GO:GO:0008353 GO:GO:0005675
GO:GO:0008094 GO:GO:0000439 EMBL:BC122792 IPI:IPI00702395
RefSeq:NP_001073057.1 UniGene:Bt.103768 STRING:Q05B56 PRIDE:Q05B56
GeneID:511896 KEGG:bta:511896 CTD:2967 eggNOG:COG5242
HOGENOM:HOG000175900 HOVERGEN:HBG054271 InParanoid:Q05B56 KO:K03143
OrthoDB:EOG47PX6J NextBio:20870148 PANTHER:PTHR12831
TIGRFAMs:TIGR00627 Uniprot:Q05B56
Length = 309
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 78/170 (45%), Positives = 111/170 (65%)
Query: 24 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 81
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 82 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 141
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 182 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 240
Query: 142 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>FB|FBgn0031309 [details] [associations]
symbol:Tfb4 "Tfb4" species:7227 "Drosophila melanogaster"
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0000439 "core TFIIH complex" evidence=ISS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0009411
"response to UV" evidence=ISS] [GO:0001113 "transcriptional open
complex formation at RNA polymerase II promoter" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004600 Pfam:PF03850 GO:GO:0009411
GO:GO:0006355 GO:GO:0006289 GO:GO:0005675 GO:GO:0000439
GO:GO:0001113 GO:GO:0001111 eggNOG:COG5242 PANTHER:PTHR12831
EMBL:AY071043 ProteinModelPortal:Q8SZ89 STRING:Q8SZ89 PaxDb:Q8SZ89
PRIDE:Q8SZ89 FlyBase:FBgn0031309 InParanoid:Q8SZ89
OrthoDB:EOG408KQV ArrayExpress:Q8SZ89 Bgee:Q8SZ89 Uniprot:Q8SZ89
Length = 299
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 91/208 (43%), Positives = 123/208 (59%)
Query: 11 NLEEFMNKDEQLGK---QEPEGRIAC-SLLSGSLSMALCYIQRVFRS---GL-LHPQPRI 62
NL E K +QLG P C SLL+GS+SMALCYI R+ R+ G+ +H RI
Sbjct: 95 NLVEKTVK-QQLGSILMNAPRLSAPCESLLAGSMSMALCYISRLQRNLAPGVKMHS--RI 151
Query: 63 LCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQL 122
L + GS + QY+ +N F+AQ+ + ID+C L + + LQQ IT G K QL
Sbjct: 152 LVVTGSNECASQYMTFLNVFFTAQKLGITIDTCALD-KTLSLLQQGCDITSGQFLKVTQL 210
Query: 123 DGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK 182
DGL QYLL +F R+ L LP P VD+RASCFCH+ ID+GY+CSVCLS++CK+
Sbjct: 211 DGLLQYLLWVFLPAPQIRHKLVLPPPPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSP 270
Query: 183 KCSTCGSVFGQAQTQSDEPSATNRKRKT 210
C+TC ++F + P +K+KT
Sbjct: 271 ICTTCHTIF---KNPGPLPIKGKKKKKT 295
>UNIPROTKB|F1RFL7 [details] [associations]
symbol:GTF2H3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] InterPro:IPR004600 Pfam:PF03850 GO:GO:0006355
GO:GO:0006281 GO:GO:0006366 GO:GO:0008353 GO:GO:0008094
GO:GO:0000439 CTD:2967 KO:K03143 PANTHER:PTHR12831
TIGRFAMs:TIGR00627 OMA:NAHLMQK GeneTree:ENSGT00390000013143
EMBL:CU468658 RefSeq:XP_001927574.1 UniGene:Ssc.8825
Ensembl:ENSSSCT00000010711 GeneID:100152121 KEGG:ssc:100152121
Uniprot:F1RFL7
Length = 309
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 77/170 (45%), Positives = 111/170 (65%)
Query: 24 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 81
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 82 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 141
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 182 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 240
Query: 142 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 QLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>UNIPROTKB|F1NGC7 [details] [associations]
symbol:GTF2H3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000439 "core TFIIH complex" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 GO:GO:0006366 GO:GO:0008353
GO:GO:0008094 GO:GO:0000439 PANTHER:PTHR12831 TIGRFAMs:TIGR00627
OMA:NAHLMQK GeneTree:ENSGT00390000013143 EMBL:AADN02034880
EMBL:AADN02034881 IPI:IPI00813120 Ensembl:ENSGALT00000039540
Uniprot:F1NGC7
Length = 301
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 78/185 (42%), Positives = 115/185 (62%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC-YIQRVFRSGLLHPQPRILCLQ 66
+ + +++ M K + +G+Q +LL+GSL+ ALC + V ++ + RIL ++
Sbjct: 107 IAEEIKDLMTKTDMMGQQTE------TLLAGSLAKALCSLLMEVLKANQ-EMKSRILVIK 159
Query: 67 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 126
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K L L
Sbjct: 160 AAEDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSGLLQQACDITGGIYLKVPHLPSLL 218
Query: 127 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 186
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C CST
Sbjct: 219 QYLLWVFLPDQEQRSQLVLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICST 278
Query: 187 CGSVF 191
C + F
Sbjct: 279 CETAF 283
>UNIPROTKB|B4DNZ6 [details] [associations]
symbol:GTF2H3 "cDNA FLJ53013, highly similar to TFIIH basal
transcription factor complex p34 subunit" species:9606 "Homo
sapiens" [GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR004600
Pfam:PF03850 GO:GO:0006355 GO:GO:0006281 EMBL:AC117503
GO:GO:0000439 HOVERGEN:HBG054271 PANTHER:PTHR12831
TIGRFAMs:TIGR00627 UniGene:Hs.355348 GeneID:2967 HGNC:HGNC:4657
EMBL:AK298128 IPI:IPI01010418 RefSeq:NP_001258796.1
ProteinModelPortal:B4DNZ6 STRING:B4DNZ6 Ensembl:ENST00000228955
ArrayExpress:B4DNZ6 Bgee:B4DNZ6 Uniprot:B4DNZ6
Length = 267
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 80/186 (43%), Positives = 118/186 (63%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCL 65
+++ +++ M K + G Q E +LL+GSL+ ALCYI R+ + + + RIL +
Sbjct: 70 IVEEIKDLMTKSDIKG-QHTE-----TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVI 123
Query: 66 QGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGL 125
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 124 KAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSL 182
Query: 126 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCS 185
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+
Sbjct: 183 LQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICT 242
Query: 186 TCGSVF 191
TC + F
Sbjct: 243 TCETAF 248
>UNIPROTKB|Q13889 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0006289
"nucleotide-excision repair" evidence=NAS;TAS] [GO:0005675 "holo
TFIIH complex" evidence=IDA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA;TAS] [GO:0004672 "protein kinase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=NAS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=TAS] [GO:0000718 "nucleotide-excision
repair, DNA damage removal" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR004600
Pfam:PF03850 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003684 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471054
GO:GO:0003700 GO:GO:0008135 GO:GO:0006368 GO:GO:0006367
Reactome:REACT_1788 GO:GO:0005675 GO:GO:0006370 GO:GO:0000718
GO:GO:0050434 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0006283 GO:GO:0000439 CTD:2967 eggNOG:COG5242
HOGENOM:HOG000175900 HOVERGEN:HBG054271 KO:K03143 OrthoDB:EOG47PX6J
PANTHER:PTHR12831 TIGRFAMs:TIGR00627 EMBL:AK313200 EMBL:Z30093
EMBL:AF548661 EMBL:BC039726 EMBL:BC047868 EMBL:BC065250
IPI:IPI00100791 PIR:S44455 RefSeq:NP_001507.2 UniGene:Hs.355348
ProteinModelPortal:Q13889 DIP:DIP-787N STRING:Q13889
PhosphoSite:Q13889 DMDM:50403772 PaxDb:Q13889 PRIDE:Q13889
DNASU:2967 Ensembl:ENST00000543341 GeneID:2967 KEGG:hsa:2967
UCSC:uc001ufo.1 GeneCards:GC12P124118 H-InvDB:HIX0026378
HGNC:HGNC:4657 MIM:601750 neXtProt:NX_Q13889 PharmGKB:PA29043
InParanoid:Q13889 OMA:NAHLMQK PhylomeDB:Q13889 GenomeRNAi:2967
NextBio:11760 ArrayExpress:Q13889 Bgee:Q13889 CleanEx:HS_GTF2H3
Genevestigator:Q13889 Uniprot:Q13889
Length = 308
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 80/186 (43%), Positives = 118/186 (63%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCL 65
+++ +++ M K + G Q E +LL+GSL+ ALCYI R+ + + + RIL +
Sbjct: 111 IVEEIKDLMTKSDIKG-QHTE-----TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVI 164
Query: 66 QGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGL 125
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 165 KAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSL 223
Query: 126 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCS 185
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+
Sbjct: 224 LQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICT 283
Query: 186 TCGSVF 191
TC + F
Sbjct: 284 TCETAF 289
>MGI|MGI:1277143 [details] [associations]
symbol:Gtf2h3 "general transcription factor IIH, polypeptide
3" species:10090 "Mus musculus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=ISO] InterPro:IPR004600 Pfam:PF03850
MGI:MGI:1277143 GO:GO:0006355 GO:GO:0046872 GO:GO:0006281
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
GO:GO:0000439 CTD:2967 eggNOG:COG5242 HOGENOM:HOG000175900
HOVERGEN:HBG054271 KO:K03143 OrthoDB:EOG47PX6J PANTHER:PTHR12831
TIGRFAMs:TIGR00627 OMA:NAHLMQK EMBL:BC017515 IPI:IPI00122664
RefSeq:NP_852075.1 UniGene:Mm.185467 ProteinModelPortal:Q8VD76
STRING:Q8VD76 PhosphoSite:Q8VD76 PaxDb:Q8VD76 PRIDE:Q8VD76
Ensembl:ENSMUST00000031333 GeneID:209357 KEGG:mmu:209357
GeneTree:ENSGT00390000013143 InParanoid:Q8VD76 NextBio:372643
Bgee:Q8VD76 CleanEx:MM_GTF2H3 Genevestigator:Q8VD76
GermOnline:ENSMUSG00000029387 Uniprot:Q8VD76
Length = 309
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 76/170 (44%), Positives = 112/170 (65%)
Query: 24 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 81
K + +G+ +LL+GSL+ ALCYI RV ++ + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 82 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 141
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 182 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 240
Query: 142 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 QLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>RGD|1305494 [details] [associations]
symbol:Gtf2h3 "general transcription factor IIH, polypeptide 3"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=ISO;ISS] [GO:0005675 "holo TFIIH complex"
evidence=ISO;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO;ISS] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISO;ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA;ISO] InterPro:IPR004600
Pfam:PF03850 RGD:1305494 GO:GO:0006355 GO:GO:0046872 GO:GO:0006281
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
GO:GO:0000439 CTD:2967 eggNOG:COG5242 HOGENOM:HOG000175900
HOVERGEN:HBG054271 KO:K03143 OrthoDB:EOG47PX6J PANTHER:PTHR12831
TIGRFAMs:TIGR00627 GeneTree:ENSGT00390000013143 EMBL:BC093380
IPI:IPI00371092 RefSeq:NP_001019407.1 UniGene:Rn.203542
STRING:Q561R7 PRIDE:Q561R7 Ensembl:ENSRNOT00000001368 GeneID:288651
KEGG:rno:288651 UCSC:RGD:1305494 InParanoid:Q561R7 NextBio:628474
Genevestigator:Q561R7 Uniprot:Q561R7
Length = 309
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 75/170 (44%), Positives = 111/170 (65%)
Query: 24 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 81
K + +G+ +LL+GSL+ ALCYI R ++ + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIKGQHTETLLAGSLAKALCYIHRASKAVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 82 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 141
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 182 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 240
Query: 142 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 QLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>ZFIN|ZDB-GENE-040718-302 [details] [associations]
symbol:gtf2h3 "general transcription factor IIH,
polypeptide 3" species:7955 "Danio rerio" [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
ZFIN:ZDB-GENE-040718-302 GO:GO:0006355 GO:GO:0006281 GO:GO:0000439
CTD:2967 eggNOG:COG5242 HOVERGEN:HBG054271 KO:K03143
PANTHER:PTHR12831 TIGRFAMs:TIGR00627 EMBL:BC076236 IPI:IPI00861571
RefSeq:NP_001002564.1 UniGene:Dr.27486 STRING:Q6DGV3 GeneID:436837
KEGG:dre:436837 InParanoid:Q6DGV3 NextBio:20831269 Uniprot:Q6DGV3
Length = 296
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 83/201 (41%), Positives = 116/201 (57%)
Query: 13 EEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPD 70
EE N E + E G +LL+ SL+ ALCYI R+ + + RIL ++ + D
Sbjct: 101 EEIRNLME---RAEVSGSQTETLLAVSLARALCYINRISKDVQAGQEVKSRILVIKAAED 157
Query: 71 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 130
QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ + Q L QYLL
Sbjct: 158 STSQYMNFMNVIFAAQKKNILIDACVLDS-DSGLLQQACDITGGLYLRVPQKVALTQYLL 216
Query: 131 TIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSV 190
F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC +
Sbjct: 217 WAFLPDAEQRSQLLLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETA 276
Query: 191 FGQAQTQSDEPSATNRKRKTT 211
F Q + T +K+ T
Sbjct: 277 FKMPLPQM---AKTKKKKLKT 294
>POMBASE|SPBC30B4.07c [details] [associations]
symbol:tfb4 "transcription factor TFIIH complex subunit
Tfb4" species:4896 "Schizosaccharomyces pombe" [GO:0000439 "core
TFIIH complex" evidence=ISO] [GO:0000991 "core RNA polymerase II
binding transcription factor activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR004600 Pfam:PF03850 PomBase:SPBC30B4.07c GO:GO:0005829
GO:GO:0006355 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006367 GO:GO:0000991 GO:GO:0006289 GO:GO:0005675
EMBL:AB004539 GO:GO:0000439 eggNOG:COG5242 HOGENOM:HOG000175900
KO:K03143 PANTHER:PTHR12831 TIGRFAMs:TIGR00627 OMA:NAHLMQK
PIR:T40173 RefSeq:NP_595532.1 IntAct:O74366 STRING:O74366
EnsemblFungi:SPBC30B4.07c.1 GeneID:2540343 KEGG:spo:SPBC30B4.07c
OrthoDB:EOG45F0ZD NextBio:20801471 Uniprot:O74366
Length = 297
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 67/158 (42%), Positives = 93/158 (58%)
Query: 34 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 93
+++SG+LS AL YI +V L + I L G D QY+ MN IF AQ+ +PI+
Sbjct: 132 TMISGALSRALAYINQVQNKNTLRSRILIFSLTG--DVALQYIPTMNCIFCAQKKNIPIN 189
Query: 94 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 153
C + + FL+QA+ TGG++ K GL QYL+ D + R L P VDF
Sbjct: 190 VCNIEG-GTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVDF 248
Query: 154 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
RA+CFCHK +D+G++CSVCLSI+C+ CSTC + F
Sbjct: 249 RATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286
>ASPGD|ASPL0000052286 [details] [associations]
symbol:AN0138 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 EMBL:BN001308 GO:GO:0006281 GO:GO:0000439
HOGENOM:HOG000175900 PANTHER:PTHR12831
EnsemblFungi:CADANIAT00002608 OMA:ACFCHRR Uniprot:C8VQI5
Length = 392
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 67/155 (43%), Positives = 92/155 (59%)
Query: 59 QPRILCLQ-GSPDGP-EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH 116
Q RIL + S G QY+ IMN IF+ QR +PID C L ++ FLQQAS T G++
Sbjct: 219 QSRILIISVSSATGSAHQYIPIMNGIFACQRLHIPIDVCKLSG-DAVFLQQASDATKGIY 277
Query: 117 HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI 176
+ GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS+CLSI
Sbjct: 278 MSLSEPRGLLQYLMMAFLPDQRSRKHLILPTRVDVDFRAACFCHRRVVDIGFVCSICLSI 337
Query: 177 YCKHLKK--CSTCGSVFGQAQTQSDEPSATNRKRK 209
+C+ + C TCG+ + +P+ RK+K
Sbjct: 338 FCEPPENGDCLTCGTHLDTGDYGA-KPAVVVRKKK 371
>CGD|CAL0005890 [details] [associations]
symbol:orf19.4194 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0070816 "phosphorylation
of RNA polymerase II C-terminal domain" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR004600 Pfam:PF03850 CGD:CAL0005890 GO:GO:0006355
GO:GO:0006281 GO:GO:0000439 EMBL:AACQ01000206 EMBL:AACQ01000205
eggNOG:COG5242 KO:K03143 PANTHER:PTHR12831 RefSeq:XP_711246.1
RefSeq:XP_711270.1 STRING:Q59NH6 GeneID:3647118 GeneID:3647134
KEGG:cal:CaO19.11671 KEGG:cal:CaO19.4194 Uniprot:Q59NH6
Length = 363
Score = 257 (95.5 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 57/153 (37%), Positives = 87/153 (56%)
Query: 61 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 120
R+L + + D +Y+ +MN IF+AQ+ V ID LG NS++LQQAS T GV+ +
Sbjct: 202 RVLIVSANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQASDATKGVYLHIE 261
Query: 121 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK- 179
G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL I +
Sbjct: 262 DPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFITGKSVDLGYVCSVCLCIMSQL 321
Query: 180 -HLKKCSTCGSVFGQA--QTQSDEPSATNRKRK 209
KC C S F + Q + EP ++K++
Sbjct: 322 PQSGKCPACDSEFDKKIIQDLNREPQVISKKKR 354
Score = 52 (23.4 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 7 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV 50
++LQ L E++ + + + + C L+G++SMAL Y R+
Sbjct: 114 SVLQQLNEYIEEIIKFETRNEKKGFNC--LTGAISMALTYTNRM 155
>UNIPROTKB|Q59NH6 [details] [associations]
symbol:TFB4 "Putative uncharacterized protein TFB4"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004600 Pfam:PF03850
CGD:CAL0005890 GO:GO:0006355 GO:GO:0006281 GO:GO:0000439
EMBL:AACQ01000206 EMBL:AACQ01000205 eggNOG:COG5242 KO:K03143
PANTHER:PTHR12831 RefSeq:XP_711246.1 RefSeq:XP_711270.1
STRING:Q59NH6 GeneID:3647118 GeneID:3647134 KEGG:cal:CaO19.11671
KEGG:cal:CaO19.4194 Uniprot:Q59NH6
Length = 363
Score = 257 (95.5 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 57/153 (37%), Positives = 87/153 (56%)
Query: 61 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 120
R+L + + D +Y+ +MN IF+AQ+ V ID LG NS++LQQAS T GV+ +
Sbjct: 202 RVLIVSANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQASDATKGVYLHIE 261
Query: 121 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK- 179
G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL I +
Sbjct: 262 DPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFITGKSVDLGYVCSVCLCIMSQL 321
Query: 180 -HLKKCSTCGSVFGQA--QTQSDEPSATNRKRK 209
KC C S F + Q + EP ++K++
Sbjct: 322 PQSGKCPACDSEFDKKIIQDLNREPQVISKKKR 354
Score = 52 (23.4 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 7 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV 50
++LQ L E++ + + + + C L+G++SMAL Y R+
Sbjct: 114 SVLQQLNEYIEEIIKFETRNEKKGFNC--LTGAISMALTYTNRM 155
>UNIPROTKB|F5GWD3 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 IPI:IPI01009488
Ensembl:ENST00000536375 ArrayExpress:F5GWD3 Bgee:F5GWD3
Uniprot:F5GWD3
Length = 258
Score = 238 (88.8 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 111 ITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYIC 170
ITGG++ K Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+C
Sbjct: 166 ITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVC 225
Query: 171 SVCLSIYCKHLKKCSTCGSVF 191
SVCLSI+C C+TC + F
Sbjct: 226 SVCLSIFCNFSPICTTCETAF 246
Score = 64 (27.6 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV 50
+++ +++ M K + G Q E +LL+GSL+ ALCYI R+
Sbjct: 111 IVEEIKDLMTKSDIKG-QHTE-----TLLAGSLAKALCYIHRM 147
>SGD|S000006260 [details] [associations]
symbol:TFB4 "Subunit of TFIIH complex" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000439 "core TFIIH complex" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA;IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000990 "core RNA
polymerase binding transcription factor activity" evidence=IC]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IPI]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0070816 "phosphorylation of RNA polymerase II
C-terminal domain" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=IDA] InterPro:IPR004600 Pfam:PF03850 SGD:S000006260
GO:GO:0046872 GO:GO:0006366 EMBL:Z71255 EMBL:BK006949 EMBL:Z49219
GO:GO:0006289 GO:GO:0070816 GO:GO:0005675 GO:GO:0000439
GO:GO:0000112 eggNOG:COG5242 HOGENOM:HOG000175900 KO:K03143
PANTHER:PTHR12831 TIGRFAMs:TIGR00627 OMA:NAHLMQK
GeneTree:ENSGT00390000013143 OrthoDB:EOG45F0ZD PIR:S54078
RefSeq:NP_015381.1 ProteinModelPortal:Q12004 DIP:DIP-5634N
IntAct:Q12004 MINT:MINT-540583 STRING:Q12004 PaxDb:Q12004
PeptideAtlas:Q12004 EnsemblFungi:YPR056W GeneID:856169
KEGG:sce:YPR056W CYGD:YPR056w NextBio:981322 Genevestigator:Q12004
GermOnline:YPR056W Uniprot:Q12004
Length = 338
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 67/192 (34%), Positives = 97/192 (50%)
Query: 10 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRIL---CL 65
+ L E + K +L K++ E S L+G++S L Y+ R+ + + + R+L C
Sbjct: 123 ETLVEEIYKLFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCG 182
Query: 66 QGSP-DGPEQYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLD 123
GS D QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +
Sbjct: 183 SGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTE 242
Query: 124 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHL 181
GL QYL T D R + P VDFR SC+ + +G+ICSVCL +
Sbjct: 243 GLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPG 302
Query: 182 KKCSTCGSVFGQ 193
KC C S F +
Sbjct: 303 NKCPACDSQFDE 314
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 33/100 (33%), Positives = 47/100 (47%)
Query: 98 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 157
G++ S FLQQ + T GV+ + +GL QYL T D R + P VDFR SC
Sbjct: 217 GSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSC 276
Query: 158 FCHKNTIDMGYICSVCLSIY--------C--------KHL 181
+ + +G+ICSVCL + C +H+
Sbjct: 277 YLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQFDEHV 316
>UNIPROTKB|H0YFF7 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 Ensembl:ENST00000543154
Bgee:H0YFF7 Uniprot:H0YFF7
Length = 194
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 48/98 (48%), Positives = 64/98 (65%)
Query: 96 YLGAQNSAFL--QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 153
Y+ N F +QA ITGG++ K Q+ L QYLL +F D R+ L LP PV VD+
Sbjct: 78 YMNFMNVIFAAQKQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDY 137
Query: 154 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 138 RAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 175
Score = 108 (43.1 bits), Expect = 0.00025, P = 0.00025
Identities = 34/108 (31%), Positives = 57/108 (52%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCL 65
+++ +++ M K + G Q E +LL+GSL+ ALCYI R+ + + + RIL +
Sbjct: 15 IVEEIKDLMTKSDIKG-QHTE-----TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVI 68
Query: 66 QGSPDGPEQYVAIMNAIFSAQRSMVPIDS-CYLGA-QNSAFLQQASYI 111
+ + D QY+ MN IF+AQ+ I YL Q + LQ ++
Sbjct: 69 KAAEDSALQYMNFMNVIFAAQKQACDITGGLYLKVPQMPSLLQYLLWV 116
>WB|WBGene00014230 [details] [associations]
symbol:ZK1128.4 species:6239 "Caenorhabditis elegans"
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR004600 Pfam:PF03850 GO:GO:0009792
GO:GO:0040010 GO:GO:0006355 GO:GO:0006281 GO:GO:0000003
GO:GO:0000439 EMBL:Z47357 eggNOG:COG5242 PANTHER:PTHR12831
TIGRFAMs:TIGR00627 GeneTree:ENSGT00390000013143 RefSeq:NP_499249.2
ProteinModelPortal:Q09645 STRING:Q09645 PaxDb:Q09645
EnsemblMetazoa:ZK1128.4 GeneID:176425 KEGG:cel:CELE_ZK1128.4
UCSC:ZK1128.4 CTD:176425 WormBase:ZK1128.4 HOGENOM:HOG000019080
InParanoid:Q09645 OMA:QYTPICK Uniprot:Q09645
Length = 296
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 52/152 (34%), Positives = 79/152 (51%)
Query: 61 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGG--VHH 117
R + + +P ++ ++MN FSA + + +D +G LQQA+ ITGG +H
Sbjct: 148 RAVVISITPIMGSEHGSLMNLFFSAAKQSICVDVVSMGDDFTGGILQQAADITGGSFLHA 207
Query: 118 KPQQLDGLFQYLLTIFGTD-LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI 176
K Q L + L+T TD H F +L VD+RASC CH + G++CS+CLS+
Sbjct: 208 KKPQT--LLKILMTNMLTDPTHRAVFSKLSHN-SVDYRASCACHHQLVSSGWVCSICLSV 264
Query: 177 YCKHLKKCSTCGSVFGQAQTQSDEPSATNRKR 208
C++ C C + F T ++ P NRKR
Sbjct: 265 LCQYTPICKVCKAAF----TIANLPIKPNRKR 292
>UNIPROTKB|F5GX35 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 IPI:IPI01010821
Ensembl:ENST00000543415 ArrayExpress:F5GX35 Bgee:F5GX35
Uniprot:F5GX35
Length = 200
Score = 144 (55.7 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 46/143 (32%), Positives = 76/143 (53%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCL 65
+++ +++ M K + G Q E +LL+GSL+ ALCYI R+ + + + RIL +
Sbjct: 70 IVEEIKDLMTKSDIKG-QHTE-----TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVI 123
Query: 66 QGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGL 125
+ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA G+ H + L
Sbjct: 124 KAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQAQ----GIAH-----ENL 173
Query: 126 FQYLLTIFGTDLHSRNFLQLPKP 148
L T+ G SR+ + + P
Sbjct: 174 IP-LETLVGVSSRSRSEISVNPP 195
>UNIPROTKB|F5H4K7 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 IPI:IPI01010954
Ensembl:ENST00000538845 ArrayExpress:F5H4K7 Bgee:F5H4K7
Uniprot:F5H4K7
Length = 210
Score = 123 (48.4 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCL 65
+++ +++ M K + G Q E +LL+GSL+ ALCYI R+ + + + RIL +
Sbjct: 126 IVEEIKDLMTKSDIKG-QHTE-----TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVI 179
Query: 66 QGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 95
+ + D QY+ MN IF+AQ+ + ID+C
Sbjct: 180 KAAEDSALQYMNFMNVIFAAQKQNILIDAC 209
>UNIPROTKB|F5GXG6 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 IPI:IPI01011371
Ensembl:ENST00000539994 ArrayExpress:F5GXG6 Bgee:F5GXG6
Uniprot:F5GXG6
Length = 177
Score = 105 (42.0 bits), Expect = 0.00039, P = 0.00039
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCL 65
+++ +++ M K + G Q E +LL+GSL+ ALCYI R+ + + + RIL +
Sbjct: 101 IVEEIKDLMTKSDIKG-QHTE-----TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVI 154
Query: 66 QGSPDGPEQYVAIMNAIFSAQR 87
+ + D QY+ MN IF+AQ+
Sbjct: 155 KAAEDSALQYMNFMNVIFAAQK 176
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.136 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 213 213 0.00084 112 3 11 22 0.46 32
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 582 (62 KB)
Total size of DFA: 172 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.07u 0.09s 20.16t Elapsed: 00:00:01
Total cpu time: 20.07u 0.09s 20.16t Elapsed: 00:00:01
Start: Fri May 10 05:08:44 2013 End: Fri May 10 05:08:45 2013