BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028156
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86IB5|TF2H3_DICDI General transcription factor IIH subunit 3 OS=Dictyostelium
discoideum GN=gtf2h3 PE=3 SV=1
Length = 372
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 42 MALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 101
+ALCYI R+ R +PRIL SPD QY+++MN IFS+Q+ +P+DSC L +
Sbjct: 196 IALCYINRIKRETPT-IKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSD 254
Query: 102 SAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHK 161
S FLQQAS++T G++ KPQ+ + L QYLLT F D SR L P VD+RASCFCHK
Sbjct: 255 STFLQQASHLTSGIYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHK 314
Query: 162 NTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 192
+D+GY+CSVCLSI+C H CSTCG+ F
Sbjct: 315 RIVDIGYVCSVCLSIFCGHSSSCSTCGTKFS 345
>sp|Q05B56|TF2H3_BOVIN General transcription factor IIH subunit 3 OS=Bos taurus GN=GTF2H3
PE=2 SV=1
Length = 309
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 112/172 (65%), Gaps = 3/172 (1%)
Query: 22 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIM 79
+ K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ M
Sbjct: 120 MTKSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFM 179
Query: 80 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 139
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 180 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 238
Query: 140 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 RSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>sp|Q13889|TF2H3_HUMAN General transcription factor IIH subunit 3 OS=Homo sapiens
GN=GTF2H3 PE=1 SV=2
Length = 308
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 112/172 (65%), Gaps = 3/172 (1%)
Query: 22 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIM 79
+ K + +G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ M
Sbjct: 119 MTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 80 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 139
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 237
Query: 140 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 RSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>sp|Q8VD76|TF2H3_MOUSE General transcription factor IIH subunit 3 OS=Mus musculus
GN=Gtf2h3 PE=1 SV=1
Length = 309
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 113/172 (65%), Gaps = 3/172 (1%)
Query: 22 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIM 79
+ K + +G+ +LL+GSL+ ALCYI RV ++ + + RIL ++ + D QY+ M
Sbjct: 120 MTKSDIKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNFM 179
Query: 80 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 139
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 180 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 238
Query: 140 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 RSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>sp|Q561R7|TF2H3_RAT General transcription factor IIH subunit 3 OS=Rattus norvegicus
GN=Gtf2h3 PE=2 SV=1
Length = 309
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 112/172 (65%), Gaps = 3/172 (1%)
Query: 22 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIM 79
+ K + +G+ +LL+GSL+ ALCYI R ++ + + RIL ++ + D QY+ M
Sbjct: 120 MTKSDIKGQHTETLLAGSLAKALCYIHRASKAVKDNQEMKSRILVIKAAEDSALQYMNFM 179
Query: 80 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 139
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 180 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 238
Query: 140 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 191
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 239 RSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>sp|O74366|TFB4_SCHPO RNA polymerase II transcription factor B subunit 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb4 PE=1 SV=1
Length = 297
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 11/184 (5%)
Query: 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQG 67
+L ++ M+ +++ ++ +++SG+LS AL YI +V L + RIL
Sbjct: 114 VLSGMKRLMSSTDKVSRK--------TMISGALSRALAYINQVQNKNTL--RSRILIFSL 163
Query: 68 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQ 127
+ D QY+ MN IF AQ+ +PI+ C + + FL+QA+ TGG++ K GL Q
Sbjct: 164 TGDVALQYIPTMNCIFCAQKKNIPINVCNIEG-GTLFLEQAADATGGIYLKVDNPKGLLQ 222
Query: 128 YLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 187
YL+ D + R L P VDFRA+CFCHK +D+G++CSVCLSI+C+ CSTC
Sbjct: 223 YLMMSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTC 282
Query: 188 GSVF 191
+ F
Sbjct: 283 HTKF 286
>sp|Q6BL86|TFB4_DEBHA RNA polymerase II transcription factor B subunit 4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB4 PE=3 SV=2
Length = 387
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 53 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 112
+ L + RIL + + D +Y+ IMN F+AQ+ VPID LG ++S++LQQAS T
Sbjct: 210 TSLTSMRSRILIVSSNDDNDIKYIPIMNTTFAAQKMKVPIDVAKLGERDSSYLQQASDAT 269
Query: 113 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 172
GV+ +GL Q L T F + R+ + LP V++RASCF ++++G++CSV
Sbjct: 270 NGVYLHIANPEGLIQTLSTAFFIEPSIRSLIILPTNSNVNYRASCFITGKSVNLGFVCSV 329
Query: 173 CLSIYCKHLK--KCSTCGSVFGQ 193
CL I K KC TCGS F +
Sbjct: 330 CLCIMSIIPKEGKCPTCGSKFDE 352
>sp|Q6CD24|TFB4_YARLI RNA polymerase II transcription factor B subunit 4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB4 PE=3 SV=1
Length = 340
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
Query: 34 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQ-GSPDGPEQYVAIMNAIFSAQRSMVPI 92
S +SG+LS+AL +I + + RIL L G + QY+ MN IF+AQ+ +P+
Sbjct: 151 SAISGALSLALGFINKHVFVDESRMRARILLLTVGHKNETIQYIPTMNCIFAAQKLKIPV 210
Query: 93 DSCYLG-AQNSAFLQQASYITGGVHHKPQQLD-----GLFQYLLTIFGTDLHSRNFLQLP 146
D C LG + FLQQA T G++ + + GL QYLL+ F +D R + LP
Sbjct: 211 DVCKLGPGSDQVFLQQACDSTHGIYMDISEKNSKTPKGLVQYLLSGFISDPSLRPHIVLP 270
Query: 147 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGSVFGQ 193
VDFRA+CF K +D+GY+CSVCL I + ++C TC + + +
Sbjct: 271 TQSNVDFRAACFLTKQVVDIGYVCSVCLCIMSQIPSNRRCPTCDTTYSE 319
>sp|Q12004|TFB4_YEAST RNA polymerase II transcription factor B subunit 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB4 PE=1
SV=1
Length = 338
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 96/192 (50%), Gaps = 8/192 (4%)
Query: 10 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ-- 66
+ L E + K +L K++ E S L+G++S L Y+ R+ + + + R+L L
Sbjct: 123 ETLVEEIYKLFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCG 182
Query: 67 --GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLD 123
S D QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +
Sbjct: 183 SGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTE 242
Query: 124 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHL 181
GL QYL T D R + P VDFR SC+ + +G+ICSVCL +
Sbjct: 243 GLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPG 302
Query: 182 KKCSTCGSVFGQ 193
KC C S F +
Sbjct: 303 NKCPACDSQFDE 314
>sp|Q6CVX9|TFB4_KLULA RNA polymerase II transcription factor B subunit 4 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB4 PE=3 SV=1
Length = 337
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 98/196 (50%), Gaps = 19/196 (9%)
Query: 15 FMNKDE-------QLGKQEPEGRIAC----SLLSGSLSMALCYIQRVFRSGL-LHPQPRI 62
F N DE +L K+E EG+ + S LSG++S AL Y+ R+ + + R+
Sbjct: 115 FRNVDEIVVEQWYRLFKEELEGQESKVSMKSSLSGAMSSALTYVNRILKENENTSLRSRL 174
Query: 63 LCLQ-GSPDGPE---QYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHH 117
L + G+ G + QY+ IMN IFSA + ID +G S FLQQA+ T GV+
Sbjct: 175 LVITCGTSQGKDEIFQYIPIMNCIFSATKMKCSIDVVKIGGGIESTFLQQATDATSGVYL 234
Query: 118 KPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI- 176
+ GL QYL T D RN + P VDFR SCF + +G++CSVCL +
Sbjct: 235 HVENTRGLIQYLSTAMFIDPSLRNVIIKPNQGSVDFRTSCFLTGKVVAVGFVCSVCLCVL 294
Query: 177 -YCKHLKKCSTCGSVF 191
+KC C S F
Sbjct: 295 SVIPPGQKCPACDSPF 310
>sp|Q75B93|TFB4_ASHGO RNA polymerase II transcription factor B subunit 4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB4 PE=3 SV=1
Length = 341
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 10/192 (5%)
Query: 12 LEEFMNKDEQLGKQEPEG--RIACSLLSGSLSMALCYIQRV-FRSGLLHPQPRILCL--- 65
+EE +Q KQ +G + S LSG++S L YI R+ + + + R+L +
Sbjct: 124 VEELYRVFQQESKQLEDGVPQPFRSTLSGAMSAGLTYINRITHETEGVSLKSRLLVITCG 183
Query: 66 -QGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLD 123
S D QY+ IMN IFSA + PID +G + S FLQQA+ T G + D
Sbjct: 184 SSASKDEVFQYIPIMNCIFSATKMKCPIDVVKVGGVKESTFLQQATDATNGNYLHVANTD 243
Query: 124 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHL 181
GL QYL T D R ++ P VDFR SC+ + +G++CSVCL +
Sbjct: 244 GLIQYLSTAMFIDPSLRQWVVKPNQSSVDFRTSCYLTGKVVAIGFVCSVCLCVLSIIPPG 303
Query: 182 KKCSTCGSVFGQ 193
KC C S F +
Sbjct: 304 NKCPACDSEFDE 315
>sp|Q6FWA7|TFB4_CANGA RNA polymerase II transcription factor B subunit 4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB4 PE=3 SV=1
Length = 335
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 12/195 (6%)
Query: 7 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV---FRSGLLHPQPRIL 63
TL++ + ++E L + + S LSG+++ AL Y R+ F S L + ++
Sbjct: 121 TLIEEFYKLYQREESLIDKPVQK----STLSGAMAAALTYTNRLTKEFESISLRSRLLVI 176
Query: 64 CLQGSPDGPE--QYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQ 120
S + E QY+ IMN IFSA + PID +G + S FLQQ + T GV+ +
Sbjct: 177 TCGSSREKDEIFQYIPIMNCIFSATKLKCPIDVIKIGGNKQSTFLQQTTDATNGVYIHLE 236
Query: 121 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YC 178
+G+ QYL T D R + P VDFR SC+ + +GYICSVCL +
Sbjct: 237 STNGIIQYLSTAMSIDPSLRQIIVRPTQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSII 296
Query: 179 KHLKKCSTCGSVFGQ 193
KC C S F +
Sbjct: 297 PPGNKCPACDSQFDE 311
>sp|Q3ACX1|RNY_CARHZ Ribonuclease Y OS=Carboxydothermus hydrogenoformans (strain Z-2901
/ DSM 6008) GN=rny PE=3 SV=1
Length = 513
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 7 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQ 66
TL + +E F K+EQL K+E E L +L L ++R+ SGL + R L L+
Sbjct: 97 TLDRKIESFERKEEQLAKKEQEIENLRQSLEETLQKELAELERI--SGLSTEEARELLLK 154
Query: 67 GSPDGPEQYVAIM 79
+ +Q +A++
Sbjct: 155 QVEEEVQQEMALL 167
>sp|Q9LY84|GDL76_ARATH GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450
PE=2 SV=1
Length = 389
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 83 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 142
F A+R +P S YL + S F A++ TGG + +Q + +FQY ++ F D+ F
Sbjct: 87 FIAERLGLPYLSAYLNSLGSNFRHGANFATGGSTIR-RQNETIFQYGISPFSLDMQIAQF 145
Query: 143 LQL 145
Q
Sbjct: 146 DQF 148
>sp|Q9JJR6|CK016_MOUSE Uncharacterized protein C11orf16 homolog OS=Mus musculus
GN=D7h11orf16 PE=2 SV=2
Length = 402
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 136 DLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 195
D HS + L +P + RA C H++ +D ++C CLS C L+ S+C V
Sbjct: 232 DCHS-SCLWVPHCSQLGPRAGCTTHRHPLDSSFLCPPCLSCACCQLQCQSSCPLVGPSWW 290
Query: 196 TQSDEPSATNRK 207
+ T RK
Sbjct: 291 PLTRTSELTTRK 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,901,237
Number of Sequences: 539616
Number of extensions: 3234901
Number of successful extensions: 6273
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6242
Number of HSP's gapped (non-prelim): 15
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)