Query 028156
Match_columns 213
No_of_seqs 127 out of 261
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1shu_X Anthrax toxin receptor 98.1 5.2E-05 1.8E-09 59.6 12.2 96 33-131 81-176 (182)
2 3ibs_A Conserved hypothetical 98.0 2.3E-05 8E-10 63.5 9.7 92 33-132 91-208 (218)
3 2x5n_A SPRPN10, 26S proteasome 97.7 0.00072 2.5E-08 55.4 13.1 93 33-130 83-182 (192)
4 4b4t_W RPN10, 26S proteasome r 97.6 0.00056 1.9E-08 59.5 11.8 96 32-131 83-187 (268)
5 4fx5_A VON willebrand factor t 97.6 0.00094 3.2E-08 61.8 13.5 94 33-132 159-253 (464)
6 1n3y_A Integrin alpha-X; alpha 97.5 0.00016 5.5E-09 57.6 6.7 95 33-128 85-185 (198)
7 1q0p_A Complement factor B; VO 97.3 0.00032 1.1E-08 56.6 5.5 100 33-132 99-215 (223)
8 3rag_A Uncharacterized protein 97.2 0.0016 5.5E-08 55.9 9.3 65 60-128 11-82 (242)
9 1ijb_A VON willebrand factor; 97.1 0.0054 1.9E-07 49.5 11.3 95 34-130 93-189 (202)
10 2b2x_A Integrin alpha-1; compu 97.1 0.001 3.4E-08 54.5 6.5 94 34-129 100-204 (223)
11 4hqf_A Thrombospondin-related 96.9 0.013 4.6E-07 49.6 12.5 93 33-129 105-202 (281)
12 3n2n_F Anthrax toxin receptor 96.9 0.0036 1.2E-07 49.0 7.9 96 33-129 82-177 (185)
13 1atz_A VON willebrand factor; 96.7 0.016 5.5E-07 45.8 10.7 91 33-128 83-176 (189)
14 1pt6_A Integrin alpha-1; cell 96.7 0.0018 6.2E-08 52.5 5.1 94 34-129 85-189 (213)
15 1v7p_C Integrin alpha-2; snake 96.7 0.0074 2.5E-07 48.3 8.5 94 34-129 84-188 (200)
16 1mf7_A Integrin alpha M; cell 96.5 0.002 6.8E-08 51.3 4.2 95 33-128 81-181 (194)
17 1rrk_A Complement factor B; BB 96.4 0.0073 2.5E-07 54.8 7.9 101 33-133 85-202 (497)
18 4hqo_A Sporozoite surface prot 96.4 0.067 2.3E-06 45.0 13.2 96 33-132 102-202 (266)
19 2odp_A Complement C2; C3/C5 co 96.1 0.015 5.1E-07 53.1 7.8 101 33-133 93-210 (509)
20 3hrz_D Complement factor B; se 95.9 0.02 6.8E-07 54.6 8.3 99 33-131 327-442 (741)
21 2x31_A Magnesium-chelatase 60 94.0 0.00035 1.2E-08 55.5 -8.5 86 33-121 79-173 (189)
22 3k6s_A Integrin alpha-X; cell 92.9 0.084 2.9E-06 53.7 4.8 92 33-125 206-303 (1095)
23 1jey_B KU80; double-strand DNA 92.5 0.42 1.4E-05 44.9 8.7 86 33-120 104-228 (565)
24 6rxn_A Rubredoxin; electron tr 92.3 0.06 2E-06 34.6 1.8 24 167-190 4-39 (46)
25 2lcq_A Putative toxin VAPC6; P 92.3 0.079 2.7E-06 42.0 3.0 34 162-195 127-162 (165)
26 2nut_A Protein transport prote 91.6 2 6.8E-05 42.1 12.6 99 31-133 263-394 (769)
27 3pwf_A Rubrerythrin; non heme 91.3 0.095 3.2E-06 42.3 2.4 26 165-190 136-162 (170)
28 2xgg_A Microneme protein 2; A/ 90.7 1.4 4.6E-05 34.2 8.7 73 33-107 97-170 (178)
29 3zqk_A VON willebrand factor; 90.2 0.9 3.1E-05 36.0 7.3 42 88-131 146-188 (199)
30 1lko_A Rubrerythrin all-iron(I 89.8 0.11 3.7E-06 42.5 1.5 24 167-190 155-180 (191)
31 1mjn_A Integrin alpha-L; rossm 89.7 0.11 3.9E-06 40.7 1.5 85 33-125 78-168 (179)
32 1pcx_A Protein transport prote 89.3 2.3 7.8E-05 41.9 10.7 83 31-121 303-412 (810)
33 2v3b_B Rubredoxin 2, rubredoxi 89.2 0.16 5.6E-06 33.7 1.8 24 167-190 3-45 (55)
34 2kn9_A Rubredoxin; metalloprot 88.5 0.19 6.4E-06 36.1 1.8 24 167-190 27-69 (81)
35 3eh2_A Protein transport prote 88.5 6.1 0.00021 38.6 13.1 83 33-121 288-397 (766)
36 3efo_B SEC24 related gene fami 88.0 5.4 0.00018 39.0 12.4 83 33-121 292-401 (770)
37 1yk4_A Rubredoxin, RD; electro 87.5 0.24 8.2E-06 32.5 1.7 24 167-190 2-44 (52)
38 1m2o_A SEC23, protein transpor 87.4 11 0.00039 36.7 14.3 122 8-133 234-388 (768)
39 4rxn_A Rubredoxin; electron tr 87.3 0.25 8.6E-06 32.7 1.7 24 167-190 3-45 (54)
40 1m2v_B SEC24, protein transpor 87.3 2.3 8E-05 42.6 9.4 83 31-121 419-528 (926)
41 1e8j_A Rubredoxin; iron-sulfur 86.3 0.4 1.4E-05 31.4 2.2 24 167-190 3-45 (52)
42 1yuz_A Nigerythrin; rubrythrin 86.2 0.32 1.1E-05 40.2 2.2 25 166-190 170-195 (202)
43 1dx8_A Rubredoxin; electron tr 85.9 0.34 1.2E-05 33.7 1.9 24 167-190 7-49 (70)
44 3eh1_A Protein transport prote 85.8 9.9 0.00034 37.1 12.8 83 31-121 268-376 (751)
45 1s24_A Rubredoxin 2; electron 85.0 0.35 1.2E-05 35.1 1.6 25 166-190 34-77 (87)
46 1twf_L ABC10-alpha, DNA-direct 78.4 1.9 6.7E-05 29.8 3.4 32 164-195 25-59 (70)
47 1z60_A TFIIH basal transcripti 77.7 0.93 3.2E-05 30.5 1.5 33 156-188 17-59 (59)
48 2gmg_A Hypothetical protein PF 75.7 1.4 4.7E-05 33.0 2.2 33 163-195 63-98 (105)
49 3mjh_B Early endosome antigen 74.1 1.2 4E-05 26.8 1.1 10 166-175 4-13 (34)
50 1jey_A KU70; double-strand DNA 72.8 7.8 0.00027 36.6 7.1 65 33-100 140-208 (609)
51 3j21_g 50S ribosomal protein L 68.1 3.8 0.00013 26.7 2.7 29 166-195 13-41 (51)
52 2lv2_A Insulinoma-associated p 67.4 2.4 8.3E-05 29.7 1.8 29 167-195 28-70 (85)
53 3uk3_C Zinc finger protein 217 63.6 2.6 9E-05 25.6 1.2 29 167-195 4-46 (57)
54 4gzn_C ZFP-57, zinc finger pro 62.9 3.3 0.00011 27.0 1.7 29 167-195 4-46 (60)
55 1vd4_A Transcription initiatio 62.5 3.3 0.00011 26.4 1.6 31 165-195 12-53 (62)
56 1bbo_A Human enhancer-binding 59.3 3.5 0.00012 25.0 1.2 28 168-195 2-43 (57)
57 2eps_A POZ-, at HOOK-, and zin 58.3 8.3 0.00028 23.4 2.9 29 165-193 10-53 (54)
58 4ayb_P DNA-directed RNA polyme 58.1 6.3 0.00022 25.3 2.3 28 168-195 4-37 (48)
59 2nvo_A RO sixty-related protei 57.1 15 0.00053 34.0 5.7 58 59-117 457-535 (535)
60 1x5w_A Zinc finger protein 64, 55.7 5.6 0.00019 25.4 1.9 30 166-195 8-51 (70)
61 2apo_B Ribosome biogenesis pro 55.4 8.1 0.00028 25.9 2.6 26 168-195 7-32 (60)
62 2adr_A ADR1; transcription reg 55.2 4.5 0.00016 24.8 1.3 28 168-195 3-44 (60)
63 1x6e_A Zinc finger protein 24; 55.2 5.7 0.00019 25.6 1.8 30 166-195 13-56 (72)
64 2yqq_A Zinc finger HIT domain- 53.9 3.9 0.00013 27.1 0.8 22 156-180 14-36 (56)
65 1x4s_A Protein FON, zinc finge 53.5 3.9 0.00013 27.4 0.8 28 154-181 11-40 (59)
66 2ect_A Ring finger protein 126 53.1 9.9 0.00034 25.2 2.8 31 168-198 39-69 (78)
67 1pft_A TFIIB, PFTFIIBN; N-term 52.6 3.5 0.00012 25.9 0.4 31 166-196 4-39 (50)
68 2lt7_A Transcriptional regulat 51.6 4.8 0.00017 30.1 1.1 12 182-193 79-90 (133)
69 2gqj_A Zinc finger protein KIA 49.1 2.9 9.8E-05 29.1 -0.5 30 166-195 23-68 (98)
70 2lce_A B-cell lymphoma 6 prote 48.6 6.6 0.00023 25.3 1.3 30 166-195 16-59 (74)
71 2egp_A Tripartite motif-contai 48.4 11 0.00039 24.8 2.5 15 181-195 53-67 (79)
72 2kdx_A HYPA, hydrogenase/ureas 48.3 9.8 0.00034 28.2 2.4 29 164-192 70-101 (119)
73 1yvr_A RO autoantigen, 60-kDa 47.9 88 0.003 28.7 9.3 73 34-116 445-538 (538)
74 2epq_A POZ-, at HOOK-, and zin 47.7 8.2 0.00028 22.2 1.5 12 167-178 10-21 (45)
75 2ko5_A Ring finger protein Z; 47.5 4.6 0.00016 29.7 0.4 37 167-203 47-83 (99)
76 1wg2_A Zinc finger (AN1-like) 47.4 7.3 0.00025 26.5 1.3 26 154-180 15-41 (64)
77 2ctu_A Zinc finger protein 483 47.2 6.9 0.00024 24.6 1.2 30 166-195 17-53 (73)
78 2j9u_B VPS36, vacuolar protein 46.8 11 0.00039 26.4 2.3 31 162-192 12-51 (76)
79 1e4u_A Transcriptional repress 46.7 17 0.00059 24.8 3.3 17 181-197 50-66 (78)
80 2ecv_A Tripartite motif-contai 45.3 13 0.00043 24.7 2.4 15 181-195 59-73 (85)
81 2ctd_A Zinc finger protein 512 45.3 12 0.00041 26.1 2.3 30 166-195 33-76 (96)
82 1nj3_A NPL4; NZF domain, rubre 44.6 16 0.00056 20.6 2.4 26 166-191 5-30 (31)
83 2drp_A Protein (tramtrack DNA- 44.6 10 0.00034 23.6 1.7 30 166-195 9-54 (66)
84 2kmk_A Zinc finger protein GFI 44.3 10 0.00035 24.4 1.8 29 167-195 29-71 (82)
85 1wfh_A Zinc finger (AN1-like) 44.3 8.8 0.0003 26.1 1.4 25 155-180 16-41 (64)
86 1llm_C Chimera of ZIF23-GCN4; 43.2 10 0.00036 25.2 1.7 12 182-193 32-43 (88)
87 1wfp_A Zinc finger (AN1-like) 42.6 9.8 0.00033 26.6 1.4 27 153-180 24-51 (74)
88 2cot_A Zinc finger protein 435 42.4 9.4 0.00032 24.7 1.3 30 166-195 17-60 (77)
89 1a1h_A QGSR zinc finger peptid 42.3 11 0.00038 24.8 1.7 29 167-195 34-76 (90)
90 2amj_A Modulator of drug activ 42.0 38 0.0013 26.9 5.2 63 56-118 9-77 (204)
91 2d9g_A YY1-associated factor 2 41.9 28 0.00097 22.4 3.5 30 166-195 10-39 (53)
92 2d9h_A Zinc finger protein 692 41.7 12 0.00041 24.2 1.8 30 166-195 6-52 (78)
93 2jny_A Uncharacterized BCR; st 41.5 6.1 0.00021 27.0 0.2 27 168-194 11-41 (67)
94 1wff_A Riken cDNA 2810002D23 p 41.4 17 0.00056 26.1 2.5 27 153-180 24-52 (85)
95 2ct1_A Transcriptional repress 41.1 12 0.00042 24.1 1.8 30 166-195 14-59 (77)
96 2dmd_A Zinc finger protein 64, 41.1 12 0.00042 24.9 1.8 29 167-195 36-78 (96)
97 3h0g_L DNA-directed RNA polyme 40.1 22 0.00074 24.0 2.8 31 165-195 19-52 (63)
98 2wbt_A B-129; zinc finger; 2.7 39.0 17 0.00058 25.9 2.3 30 166-195 73-114 (129)
99 2dlq_A GLI-kruppel family memb 38.8 17 0.00059 25.2 2.4 31 165-195 64-108 (124)
100 2js4_A UPF0434 protein BB2007; 38.5 7.2 0.00025 26.8 0.2 27 168-194 9-39 (70)
101 3b08_B Ranbp-type and C3HC4-ty 38.0 20 0.0007 24.2 2.4 30 166-195 7-36 (64)
102 3a9j_C Mitogen-activated prote 37.9 21 0.00072 20.5 2.2 25 166-190 7-31 (34)
103 3irb_A Uncharacterized protein 37.8 13 0.00043 28.8 1.5 27 165-191 45-71 (145)
104 1f2i_G Fusion of N-terminal 17 37.4 15 0.00051 23.3 1.7 29 167-195 19-63 (73)
105 2yt9_A Zinc finger-containing 37.2 17 0.00058 24.1 2.0 29 167-195 35-79 (95)
106 2ee8_A Protein ODD-skipped-rel 36.8 17 0.00057 24.8 1.9 29 167-195 45-87 (106)
107 3f2b_A DNA-directed DNA polyme 36.8 17 0.00058 37.0 2.6 39 155-193 486-539 (1041)
108 1wfl_A Zinc finger protein 216 36.2 14 0.00049 25.8 1.5 27 154-181 25-52 (74)
109 3fcs_B Integrin beta-3; beta p 36.2 3E+02 0.01 26.4 11.3 59 74-133 288-348 (690)
110 2zjr_Z 50S ribosomal protein L 35.7 15 0.00052 24.4 1.5 22 168-190 31-52 (60)
111 1vq8_Z 50S ribosomal protein L 35.2 9.4 0.00032 27.1 0.4 30 166-195 26-59 (83)
112 2csh_A Zinc finger protein 297 34.8 17 0.00058 25.0 1.7 29 167-195 37-79 (110)
113 2aus_D NOP10, ribosome biogene 34.8 24 0.00082 23.6 2.3 26 168-195 6-31 (60)
114 2kre_A Ubiquitin conjugation f 34.6 16 0.00053 26.2 1.5 15 181-195 63-77 (100)
115 2c2l_A CHIP, carboxy terminus 34.4 14 0.00048 30.2 1.4 13 183-195 245-257 (281)
116 2yu4_A E3 SUMO-protein ligase 34.2 10 0.00035 26.7 0.4 9 182-190 49-59 (94)
117 3axs_A Probable N(2),N(2)-dime 34.0 17 0.00059 32.5 2.0 30 165-194 240-276 (392)
118 2jrp_A Putative cytoplasmic pr 33.7 14 0.00047 26.3 1.0 22 169-191 20-41 (81)
119 2ysl_A Tripartite motif-contai 33.3 26 0.00088 22.6 2.4 14 181-194 57-70 (73)
120 2epr_A POZ-, at HOOK-, and zin 32.8 22 0.00077 20.6 1.8 12 167-178 12-23 (48)
121 2k0a_A PRE-mRNA-splicing facto 31.9 17 0.0006 27.0 1.4 19 157-175 11-30 (109)
122 2jvx_A NF-kappa-B essential mo 31.9 17 0.00059 20.6 1.1 9 168-176 4-12 (28)
123 2dlk_A Novel protein; ZF-C2H2 31.3 28 0.00095 22.2 2.3 25 167-191 38-78 (79)
124 1gh9_A 8.3 kDa protein (gene M 30.7 11 0.00036 26.1 0.0 28 166-195 3-34 (71)
125 2m0e_A Zinc finger and BTB dom 30.7 20 0.00068 17.6 1.2 14 182-195 3-16 (29)
126 2ecw_A Tripartite motif-contai 30.5 18 0.00062 23.9 1.2 15 181-195 59-73 (85)
127 1rmd_A RAG1; V(D)J recombinati 30.0 20 0.00067 25.8 1.4 15 181-195 58-72 (116)
128 3nw0_A Non-structural maintena 30.0 29 0.00098 29.0 2.6 41 155-195 181-231 (238)
129 3k1y_A Oxidoreductase; structu 29.9 69 0.0024 25.3 4.8 40 59-98 11-57 (191)
130 3tem_A Ribosyldihydronicotinam 29.8 71 0.0024 25.9 5.0 39 60-98 2-41 (228)
131 4gi5_A Quinone reductase; prot 29.5 81 0.0028 26.8 5.5 38 61-98 24-62 (280)
132 2hf1_A Tetraacyldisaccharide-1 29.5 14 0.00047 25.2 0.4 27 168-194 9-39 (68)
133 2jr6_A UPF0434 protein NMA0874 29.4 14 0.00049 25.1 0.5 27 168-194 9-39 (68)
134 2pk7_A Uncharacterized protein 29.1 16 0.00053 25.0 0.6 27 168-194 9-39 (69)
135 3u7r_A NADPH-dependent FMN red 29.0 74 0.0025 25.2 4.8 40 59-98 2-41 (190)
136 1ltl_A DNA replication initiat 28.8 22 0.00074 30.1 1.7 29 162-190 129-165 (279)
137 3cc2_Z 50S ribosomal protein L 28.7 17 0.00059 27.5 0.9 29 167-195 60-92 (116)
138 3mkr_B Coatomer subunit alpha; 28.3 21 0.00072 31.4 1.5 38 156-193 264-306 (320)
139 1x6h_A Transcriptional repress 28.2 28 0.00095 22.5 1.8 30 166-195 14-61 (86)
140 2ep4_A Ring finger protein 24; 28.0 46 0.0016 21.5 2.9 15 181-195 52-66 (74)
141 1znf_A 31ST zinc finger from X 27.9 19 0.00064 17.6 0.7 13 183-195 3-15 (27)
142 1x92_A APC5045, phosphoheptose 27.6 54 0.0018 25.3 3.7 45 61-111 116-163 (199)
143 1qxf_A GR2, 30S ribosomal prot 27.6 16 0.00054 25.0 0.5 27 169-195 9-40 (66)
144 3jyw_9 60S ribosomal protein L 27.3 28 0.00095 24.1 1.7 30 166-195 25-58 (72)
145 2crc_A Ubiquitin conjugating e 27.0 33 0.0011 22.1 1.9 30 165-194 8-37 (52)
146 3gj3_B Nuclear pore complex pr 26.9 42 0.0014 19.6 2.2 25 166-190 6-30 (33)
147 2eq0_A Zinc finger protein 347 26.7 36 0.0012 19.3 2.0 12 167-178 12-23 (46)
148 2gnr_A Conserved hypothetical 26.6 25 0.00085 27.2 1.5 26 165-190 45-70 (145)
149 2ytk_A Zinc finger protein 347 26.6 38 0.0013 19.1 2.1 12 167-178 12-23 (46)
150 2el4_A Zinc finger protein 268 26.6 38 0.0013 19.1 2.1 12 167-178 12-23 (46)
151 3lrq_A E3 ubiquitin-protein li 26.1 17 0.00057 25.7 0.4 29 167-195 35-72 (100)
152 2ema_A Zinc finger protein 347 26.1 39 0.0013 19.1 2.0 12 167-178 12-23 (46)
153 2jwk_A Protein TOLR; periplasm 25.8 70 0.0024 20.6 3.5 27 63-91 48-74 (74)
154 2lvu_A Zinc finger and BTB dom 31.5 15 0.0005 18.1 0.0 14 182-195 3-16 (26)
155 1paa_A Yeast transcription fac 25.5 27 0.00092 17.4 1.1 14 182-195 3-16 (30)
156 3mv2_A Coatomer subunit alpha; 25.3 25 0.00085 31.1 1.4 26 167-192 287-314 (325)
157 1q1s_A Large T antigen; import 25.3 21 0.00072 19.9 0.6 9 204-212 17-25 (26)
158 1ard_A Yeast transcription fac 24.8 27 0.00093 17.2 1.0 14 182-195 3-16 (29)
159 1wfe_A Riken cDNA 2310008M20 p 24.7 25 0.00085 25.0 1.1 25 155-179 26-52 (86)
160 1wjp_A Zinc finger protein 295 24.6 22 0.00076 24.4 0.8 29 167-195 42-83 (107)
161 2ep2_A Zinc finger protein 484 24.5 43 0.0015 18.9 2.1 12 167-178 12-23 (46)
162 1klr_A Zinc finger Y-chromosom 24.5 29 0.00097 17.1 1.1 14 182-195 3-16 (30)
163 2cq7_A Cysteine-rich secretory 24.4 12 0.00041 24.1 -0.6 14 151-164 34-47 (49)
164 2ytj_A Zinc finger protein 484 24.3 44 0.0015 18.9 2.1 12 167-178 12-23 (46)
165 3a43_A HYPD, hydrogenase nicke 24.3 31 0.001 26.4 1.6 28 165-192 68-118 (139)
166 2emh_A Zinc finger protein 484 24.0 44 0.0015 18.8 2.0 12 167-178 12-23 (46)
167 1wii_A Hypothetical UPF0222 pr 23.8 15 0.00052 26.2 -0.2 32 164-195 20-61 (85)
168 2kvh_A Zinc finger and BTB dom 23.7 30 0.001 16.9 1.1 9 168-176 4-12 (27)
169 2epw_A Zinc finger protein 268 23.7 46 0.0016 18.7 2.0 12 167-178 12-23 (46)
170 2yu8_A Zinc finger protein 347 23.5 46 0.0016 18.7 2.1 12 167-178 12-23 (46)
171 2lk0_A RNA-binding protein 5; 23.5 49 0.0017 18.9 2.0 25 166-190 4-28 (32)
172 2eml_A Zinc finger protein 28 23.4 47 0.0016 18.7 2.1 12 167-178 12-23 (46)
173 2i13_A AART; DNA binding, zinc 23.3 33 0.0011 26.0 1.7 30 166-195 132-175 (190)
174 1x4v_A Hypothetical protein LO 23.2 44 0.0015 22.4 2.0 25 155-179 13-39 (63)
175 2en8_A Zinc finger protein 224 23.2 47 0.0016 18.7 2.0 12 167-178 12-23 (46)
176 2em5_A ZFP-95, zinc finger pro 22.9 49 0.0017 18.7 2.1 12 167-178 12-23 (46)
177 2emy_A Zinc finger protein 268 22.8 49 0.0017 18.6 2.1 12 167-178 12-23 (46)
178 2emf_A Zinc finger protein 484 22.6 51 0.0017 18.6 2.1 11 167-177 12-22 (46)
179 2ytn_A Zinc finger protein 347 22.5 38 0.0013 19.2 1.5 11 183-193 14-24 (46)
180 2eoe_A Zinc finger protein 347 22.5 38 0.0013 19.1 1.5 11 167-177 12-22 (46)
181 2eod_A TNF receptor-associated 22.4 35 0.0012 21.2 1.4 29 167-195 10-51 (66)
182 2eme_A Zinc finger protein 473 22.4 51 0.0017 18.5 2.1 12 167-178 12-23 (46)
183 2eoo_A ZFP-95, zinc finger pro 22.3 51 0.0017 18.6 2.1 12 167-178 12-23 (46)
184 1l8d_A DNA double-strand break 22.3 23 0.00077 25.6 0.5 10 183-192 49-58 (112)
185 1m3s_A Hypothetical protein YC 22.3 58 0.002 24.8 2.9 45 61-111 82-126 (186)
186 2em9_A Zinc finger protein 224 22.3 50 0.0017 18.5 2.0 12 167-178 12-23 (46)
187 3j20_W 30S ribosomal protein S 22.2 24 0.00082 23.9 0.5 27 169-195 17-48 (63)
188 3gj5_B Nuclear pore complex pr 22.1 60 0.002 19.1 2.2 26 165-190 5-30 (34)
189 2ene_A Zinc finger protein 347 22.1 51 0.0017 18.6 2.0 11 167-177 12-22 (46)
190 2el6_A Zinc finger protein 268 22.0 53 0.0018 18.5 2.1 12 167-178 12-23 (46)
191 2emp_A Zinc finger protein 347 21.8 52 0.0018 18.5 2.1 12 167-178 12-23 (46)
192 1iym_A EL5; ring-H2 finger, ub 21.7 33 0.0011 20.8 1.2 24 169-192 31-54 (55)
193 2m0f_A Zinc finger and BTB dom 21.7 34 0.0012 16.7 1.0 10 184-193 5-14 (29)
194 1rik_A E6APC1 peptide; E6-bind 21.6 35 0.0012 16.7 1.1 10 184-193 5-14 (29)
195 2ytg_A ZFP-95, zinc finger pro 21.5 53 0.0018 18.5 2.0 11 167-177 12-22 (46)
196 2emm_A ZFP-95, zinc finger pro 21.4 54 0.0018 18.4 2.0 12 167-178 12-23 (46)
197 2ysp_A Zinc finger protein 224 21.3 48 0.0017 18.7 1.8 12 167-178 12-23 (46)
198 2em7_A Zinc finger protein 224 21.3 54 0.0019 18.4 2.0 12 167-178 12-23 (46)
199 2enc_A Zinc finger protein 224 21.0 57 0.0019 18.3 2.1 12 167-178 12-23 (46)
200 2ep0_A Zinc finger protein 28 20.9 56 0.0019 18.3 2.1 12 167-178 12-23 (46)
201 3iz6_X 40S ribosomal protein S 20.9 35 0.0012 24.5 1.2 27 169-195 38-69 (86)
202 2ytd_A Zinc finger protein 473 20.9 57 0.002 18.3 2.1 12 167-178 12-23 (46)
203 2m0d_A Zinc finger and BTB dom 20.7 36 0.0012 16.7 1.0 9 168-176 4-12 (30)
204 2k4x_A 30S ribosomal protein S 20.7 49 0.0017 21.4 1.8 31 162-192 13-47 (55)
205 1p7a_A BF3, BKLF, kruppel-like 20.7 37 0.0013 18.0 1.1 14 181-194 11-24 (37)
206 2kvf_A Zinc finger and BTB dom 20.6 38 0.0013 16.6 1.1 8 168-175 4-11 (28)
207 2em8_A Zinc finger protein 224 20.6 57 0.0019 18.4 2.0 12 167-178 12-23 (46)
208 2eop_A Zinc finger protein 268 20.2 46 0.0016 18.7 1.5 11 183-193 14-24 (46)
209 1bor_A Transcription factor PM 20.2 54 0.0018 20.3 2.0 23 170-195 29-51 (56)
210 1rim_A E6APC2 peptide; E6-bind 20.2 33 0.0011 18.1 0.8 14 182-195 3-16 (33)
211 1x4w_A Hypothetical protein FL 20.1 34 0.0012 23.4 0.9 26 155-181 16-45 (67)
212 2jp9_A Wilms tumor 1; DNA bind 20.0 45 0.0015 22.8 1.7 29 167-195 66-110 (119)
No 1
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.08 E-value=5.2e-05 Score=59.60 Aligned_cols=96 Identities=11% Similarity=-0.040 Sum_probs=70.6
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcChHHHHHHHHhh
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 112 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e~~iLqq~~~~T 112 (213)
.+.+..||..|+..+.+..+ ....+.|++|+-..+.......+...+..+++.+|+|.++++|..+...|++++..|
T Consensus 81 ~T~~~~al~~a~~~l~~~~~---~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~~~~~L~~ia~~~ 157 (182)
T 1shu_X 81 ETYIHEGLKLANEQIQKAGG---LKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFEQAQLERIADSK 157 (182)
T ss_dssp CCCHHHHHHHHHHHHHHHTG---GGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHSSSG
T ss_pred CchHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcCCHHHHHHHhCCC
Confidence 56789999999998876521 134456666663332322223345677888999999999999877899999999999
Q ss_pred CCeeeccCCcchHHHHHHH
Q 028156 113 GGVHHKPQQLDGLFQYLLT 131 (213)
Q Consensus 113 gG~Y~~~~~~~~l~~~Ll~ 131 (213)
||.|.+..+.+.|.+.+-.
T Consensus 158 ~~~~~~~~~~~~L~~~~~~ 176 (182)
T 1shu_X 158 EQVFPVKGGFQALKGIINS 176 (182)
T ss_dssp GGEEESSSTTHHHHHHHHH
T ss_pred CceEEccCCHHHHHHHHHH
Confidence 9999998787777666543
No 2
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.05 E-value=2.3e-05 Score=63.52 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=66.9
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCC-------------
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA------------- 99 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~------------- 99 (213)
.+.+..||..|+..+.+. ....+.|++|+-..+... .+...+..+++.+|+|.+++++.
T Consensus 91 ~T~l~~al~~a~~~l~~~-----~~~~~~ivllTDG~~~~~---~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~ 162 (218)
T 3ibs_A 91 GTAIGEAINLATRSFTPQ-----EGVGRAIIVITDGENHEG---GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTND 162 (218)
T ss_dssp SCCHHHHHHHHHTTSCSC-----SSCCEEEEEEECCTTCCS---CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSC
T ss_pred CCcHHHHHHHHHHHHhhC-----CCCCcEEEEEcCCCCCCC---cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCc
Confidence 467888888888766553 245567777773332222 45677888899999999999974
Q ss_pred -------------cChHHHHHHHHhhCCeeeccCCcchHHHHHHHH
Q 028156 100 -------------QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 132 (213)
Q Consensus 100 -------------~e~~iLqq~~~~TgG~Y~~~~~~~~l~~~Ll~~ 132 (213)
.+...|+++|+.|||.|+.+.+....++.++..
T Consensus 163 ~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~ 208 (218)
T 3ibs_A 163 YRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQE 208 (218)
T ss_dssp BCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHH
T ss_pred eeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHH
Confidence 247799999999999999999865555555443
No 3
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.70 E-value=0.00072 Score=55.43 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=63.9
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcC--hHHHHHHHH
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN--SAFLQQASY 110 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e--~~iLqq~~~ 110 (213)
.+.+..||.+|...+.+.. ....+.||+|+..++ ...+..++...+..+++.+|+|+++++|..+ .. |+++++
T Consensus 83 ~t~l~~aL~~A~~~l~~~~---~~~~~~riiil~~~~-~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~ 157 (192)
T 2x5n_A 83 NAKFGDGIQIAQLALKHRE---NKIQRQRIVAFVGSP-IVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFID 157 (192)
T ss_dssp CCCHHHHHHHHHHHHHTCS---CTTSEEEEEEEECSC-CSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHH
T ss_pred CchHHHHHHHHHHHHHhcc---ccCCCceEEEEEECC-CCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHH
Confidence 5779999999988776642 123455777666543 2445677888999999999999999998542 25 999999
Q ss_pred hhC----CeeeccCCcch-HHHHHH
Q 028156 111 ITG----GVHHKPQQLDG-LFQYLL 130 (213)
Q Consensus 111 ~Tg----G~Y~~~~~~~~-l~~~Ll 130 (213)
.++ +.|..+..... |.+.|+
T Consensus 158 ~~n~~~~s~~~~~~~~~~~l~d~~~ 182 (192)
T 2x5n_A 158 AANSSDSCHLVSIPPSPQLLSDLVN 182 (192)
T ss_dssp HHCSTTCCEEEEECCCSSCHHHHHH
T ss_pred hccCCCceEEEEecCcchhHHHHHh
Confidence 965 45554444332 444443
No 4
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00056 Score=59.47 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=71.1
Q ss_pred cccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCc--ChHHHHHHH
Q 028156 32 ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ--NSAFLQQAS 109 (213)
Q Consensus 32 ~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~--e~~iLqq~~ 109 (213)
-.+.++.+|.+|+..+.+.. ....+.||+++++|+ ...+...+...+..++|.||.||||++|.. ....|++++
T Consensus 83 G~T~l~~gL~~A~~aLk~~~---~k~~~~rIIlf~ds~-~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~ 158 (268)
T 4b4t_W 83 GKLHMATALQIAQLTLKHRQ---NKVQHQRIVAFVCSP-ISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFI 158 (268)
T ss_dssp SCCCHHHHHHHHHHHHHTCS---CTTSEEEEEEEECSC-CSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcc---cCCCceEEEEEECCC-CCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHH
Confidence 35789999999999887753 235677888888776 345677888999999999999999999842 456999999
Q ss_pred HhhCCe-----eecc--CCcchHHHHHHH
Q 028156 110 YITGGV-----HHKP--QQLDGLFQYLLT 131 (213)
Q Consensus 110 ~~TgG~-----Y~~~--~~~~~l~~~Ll~ 131 (213)
+..||. |++. .-+.-|.+.|++
T Consensus 159 ~~~Ng~~~~~s~~v~v~~g~~~lsd~l~~ 187 (268)
T 4b4t_W 159 AAVNNPQEETSHLLTVTPGPRLLYENIAS 187 (268)
T ss_dssp HHHCSSTTTSCEEEEECCCSSCHHHHHHT
T ss_pred HHhcCCCCCceeEEEeCCCCccHHHHHhc
Confidence 998873 3332 222335566655
No 5
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.59 E-value=0.00094 Score=61.84 Aligned_cols=94 Identities=13% Similarity=0.024 Sum_probs=68.9
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCC-cChHHHHHHHHh
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYI 111 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~-~e~~iLqq~~~~ 111 (213)
.+.+..+|..|+..+.+. ....+.|++|+-..+....+..+.+.+. +.+.+|+|.++++|. .+..+|+++|+.
T Consensus 159 gT~l~~aL~~A~~~l~~~-----~~~~~~IILLTDG~~~~~~~~~l~~~~~-a~~~~i~i~tiGiG~~~d~~~L~~IA~~ 232 (464)
T 4fx5_A 159 GTAMGRWLAQAGRIFDTA-----PSAIKHAILLTDGKDESETPADLARAIQ-SSIGNFTADCRGIGEDWEPKELRKIADA 232 (464)
T ss_dssp CCCHHHHHHHHHHHHTTC-----TTSEEEEEEEESSCCTTSCHHHHHHHHH-HHTTTCEEEEEEESSSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcC-----CCCCCEEEEEcCCCCCCCChHHHHHHHH-HhcCCCeEEEEEeCCccCHHHHHHHHHh
Confidence 467999999999988763 2334667777744333344444555443 567899999999974 377899999999
Q ss_pred hCCeeeccCCcchHHHHHHHH
Q 028156 112 TGGVHHKPQQLDGLFQYLLTI 132 (213)
Q Consensus 112 TgG~Y~~~~~~~~l~~~Ll~~ 132 (213)
|||.|+.+.+.+.|.+.+...
T Consensus 233 tgG~~~~v~d~~~L~~~f~~i 253 (464)
T 4fx5_A 233 LLGTVGIIRDPATLAEDFREM 253 (464)
T ss_dssp TTCCEEEESSGGGHHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHH
Confidence 999999999988776665443
No 6
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=97.54 E-value=0.00016 Score=57.63 Aligned_cols=95 Identities=8% Similarity=0.007 Sum_probs=61.7
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcC-----hHHHHH
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN-----SAFLQQ 107 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e-----~~iLqq 107 (213)
.+.+..||..|+..+.+..........+.|++|+-.. ...+..+..+.+..+++.+|+|.+++++... ...|++
T Consensus 85 ~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~-~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~ 163 (198)
T 1n3y_A 85 FTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGK-KEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELND 163 (198)
T ss_dssp CBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSC-CBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHH
T ss_pred CchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCC-CCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHH
Confidence 5678888888885442221111122344455555322 2223344556778889999999999997432 589999
Q ss_pred HHHhhCCee-eccCCcchHHHH
Q 028156 108 ASYITGGVH-HKPQQLDGLFQY 128 (213)
Q Consensus 108 ~~~~TgG~Y-~~~~~~~~l~~~ 128 (213)
++..|||.| +.+.+.+.|.+.
T Consensus 164 iA~~~~g~~~~~~~~~~~l~~~ 185 (198)
T 1n3y_A 164 IASKPSQEHIFKVEDFDALKDI 185 (198)
T ss_dssp HSCSSSGGGEEEESSGGGGGGG
T ss_pred HHcCCCcccEEEeCCHHHHHHH
Confidence 999999998 777776655443
No 7
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=97.27 E-value=0.00032 Score=56.64 Aligned_cols=100 Identities=7% Similarity=0.052 Sum_probs=58.7
Q ss_pred ccchHhHHHHHHHHHhhhhhcCC---CCCCcEEEEEecC-CCCCcchhhHHHHHHH----------HHhCCeeeeEEEcC
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGL---LHPQPRILCLQGS-PDGPEQYVAIMNAIFS----------AQRSMVPIDSCYLG 98 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~---~~~~~rILiis~S-~d~~~qyi~imn~if~----------aqk~~I~Idv~~L~ 98 (213)
.+.+..||..|+..+.......+ ....+.|++|+-. ...+.++......+.. +++.+|+|.+|++|
T Consensus 99 ~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG 178 (223)
T 1q0p_A 99 GTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG 178 (223)
T ss_dssp CCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECS
T ss_pred CccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEec
Confidence 56788888888887764311000 1233445555522 2222245555555533 35778999999997
Q ss_pred C-cChHHHHHHHHhhCC--eeeccCCcchHHHHHHHH
Q 028156 99 A-QNSAFLQQASYITGG--VHHKPQQLDGLFQYLLTI 132 (213)
Q Consensus 99 ~-~e~~iLqq~~~~TgG--~Y~~~~~~~~l~~~Ll~~ 132 (213)
. .+...|+++|..||| .|+.+.+.+.|.+.+...
T Consensus 179 ~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i 215 (223)
T 1q0p_A 179 PLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQM 215 (223)
T ss_dssp SCCCHHHHHHHSCCCTTCCCEEETTC-----------
T ss_pred CcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHH
Confidence 4 477899999999999 898888888776655443
No 8
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.20 E-value=0.0016 Score=55.88 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=45.3
Q ss_pred cEEEEEecCCCC-CcchhhHHHHHHHHHhCCeeeeEEEcCCc------ChHHHHHHHHhhCCeeeccCCcchHHHH
Q 028156 60 PRILCLQGSPDG-PEQYVAIMNAIFSAQRSMVPIDSCYLGAQ------NSAFLQQASYITGGVHHKPQQLDGLFQY 128 (213)
Q Consensus 60 ~rILiis~S~d~-~~qyi~imn~if~aqk~~I~Idv~~L~~~------e~~iLqq~~~~TgG~Y~~~~~~~~l~~~ 128 (213)
+.|++|+-..++ +.++. .....|++.+|+|.+|+++.. +...|+++|+.|||.|+.+ +.+.|.+.
T Consensus 11 k~iillTDG~~~~g~~p~---~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a-~~~~l~~~ 82 (242)
T 3rag_A 11 RQILVITDGCSNIGPDPV---EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIV-QPADISAT 82 (242)
T ss_dssp EEEEEEESSCCCSSSCHH---HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEE-CGGGHHHH
T ss_pred cEEEEEccCCCCCCCCHH---HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEe-eHHHHHHH
Confidence 344445533322 33433 556788999999999999533 2478999999999999998 44555554
No 9
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.11 E-value=0.0054 Score=49.48 Aligned_cols=95 Identities=14% Similarity=0.013 Sum_probs=61.0
Q ss_pred cchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCC-cChHHHHHHHHh-
Q 028156 34 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYI- 111 (213)
Q Consensus 34 s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~-~e~~iLqq~~~~- 111 (213)
+.+..||..|+..+-+ +.......+.|++|+-..+.......+...+..+++.+|+|.+|++|. .+...|+++|..
T Consensus 93 T~~~~aL~~a~~~~~~--~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~iA~~~ 170 (202)
T 1ijb_A 93 ASTSEVLKYTLFQIFS--KIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQA 170 (202)
T ss_dssp CCHHHHHHHHHHHTSS--SCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSCHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHhc--cCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcCCHHHHHHHhCCC
Confidence 4566677766644321 111123334455555332221122356677888899999999999974 477899999986
Q ss_pred hCCeeeccCCcchHHHHHH
Q 028156 112 TGGVHHKPQQLDGLFQYLL 130 (213)
Q Consensus 112 TgG~Y~~~~~~~~l~~~Ll 130 (213)
++|.|+.+.+.+.|.+.+-
T Consensus 171 ~~~~~~~~~~~~~L~~~~~ 189 (202)
T 1ijb_A 171 PENKAFVLSSVDELEQQRD 189 (202)
T ss_dssp TTCCCEEESSGGGHHHHHH
T ss_pred CcccEEEeCCHHHHHHHHH
Confidence 5788888888887766553
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.06 E-value=0.001 Score=54.53 Aligned_cols=94 Identities=7% Similarity=-0.048 Sum_probs=61.0
Q ss_pred cchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCc-C---------hH
Q 028156 34 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-N---------SA 103 (213)
Q Consensus 34 s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~-e---------~~ 103 (213)
+.+..||..|+..+............+.|++|+-..+ .+...+...+..+++.+|+|.++++|.. + ..
T Consensus 100 T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~--~~~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~ 177 (223)
T 2b2x_A 100 TMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGES--HDNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVE 177 (223)
T ss_dssp CCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCC--TTGGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHH
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCC--CCCccHHHHHHHHHHCCCEEEEEEecCccccccccchhHHH
Confidence 5678888888765332111111223334444552221 1222456778888999999999999632 1 37
Q ss_pred HHHHHHHh-hCCeeeccCCcchHHHHH
Q 028156 104 FLQQASYI-TGGVHHKPQQLDGLFQYL 129 (213)
Q Consensus 104 iLqq~~~~-TgG~Y~~~~~~~~l~~~L 129 (213)
.|+++|.. |||.|+.+.+.+.|.+++
T Consensus 178 ~L~~iA~~p~~g~~~~~~~~~~L~~i~ 204 (223)
T 2b2x_A 178 EIKSIASEPTEKHFFNVSDELALVTIV 204 (223)
T ss_dssp HHHTTSCSSGGGTEEEESSTTGGGGGH
T ss_pred HHHHHhCCCchhcEEEeCCHHHHHHHH
Confidence 99999999 999999998877765544
No 11
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=96.91 E-value=0.013 Score=49.60 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=64.6
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCc-ChHHHHHHHHh
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYI 111 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~-e~~iLqq~~~~ 111 (213)
.+.+..||..|+..+.... ......+.|++|+-. .+.+...+...+..+++.+|+|.+|++|.. +..+|++++..
T Consensus 105 ~T~~~~aL~~a~~~l~~~~--~r~~~~~~iillTDG--~~~d~~~~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~~ 180 (281)
T 4hqf_A 105 KTSLTDALLQVRKHLNDRI--NRENANQLVVILTDG--IPDSIQDSLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVGC 180 (281)
T ss_dssp SCCHHHHHHHHHHHHHTSC--CCTTCEEEEEEEESS--CCSCHHHHHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTTS
T ss_pred CccHHHHHHHHHHHHHhcc--CCCCCCEEEEEEecC--CCCCcHHHHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhCC
Confidence 4668999999977776531 111233344445522 223455778889999999999999999853 77899999987
Q ss_pred --hCC--eeeccCCcchHHHHH
Q 028156 112 --TGG--VHHKPQQLDGLFQYL 129 (213)
Q Consensus 112 --TgG--~Y~~~~~~~~l~~~L 129 (213)
||| .|+.+.+.+.|.+++
T Consensus 181 ~~~~g~~~~~~~~~~~~L~~~~ 202 (281)
T 4hqf_A 181 HPSDGKCNLYADSAWENVKNVI 202 (281)
T ss_dssp CSSSSCCTTEEEECGGGHHHHH
T ss_pred CCCCCCCceEEecchhhhhccc
Confidence 676 677777777665543
No 12
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=96.87 E-value=0.0036 Score=48.99 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=63.0
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcChHHHHHHHHhh
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 112 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e~~iLqq~~~~T 112 (213)
.+.+..||..|+..+....+.. ....+.|++|+-..+...........+..+++.+|+|.++++|..+...|+++|...
T Consensus 82 ~T~~~~al~~a~~~l~~~~~~~-~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~L~~iA~~~ 160 (185)
T 3n2n_F 82 DTYMHEGFERASEQIYYENRQG-YRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKDFNETQLARIADSK 160 (185)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTC-BCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECSSCCHHHHTTTSSSG
T ss_pred CccHHHHHHHHHHHHhhccccC-CCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEeccCCHHHHHHHhCCC
Confidence 4678999999998775432111 123344555553222221222345678889999999999999977899999999887
Q ss_pred CCeeeccCCcchHHHHH
Q 028156 113 GGVHHKPQQLDGLFQYL 129 (213)
Q Consensus 113 gG~Y~~~~~~~~l~~~L 129 (213)
++.|.+..+.+.|.+++
T Consensus 161 ~~~~~~~~~~~~L~~~~ 177 (185)
T 3n2n_F 161 DHVFPVNDGFQALQGII 177 (185)
T ss_dssp GGEEEHHHHHHHHHHHH
T ss_pred CCeEEeccHHHHHHHHH
Confidence 77777643355555444
No 13
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=96.71 E-value=0.016 Score=45.78 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=59.6
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcE-EEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCC-cChHHHHHHHH
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPR-ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASY 110 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~r-ILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~-~e~~iLqq~~~ 110 (213)
.+.+..||..|+..+.....+. ....++ +++|+... ...+ +...+..+++.+|+|.++++|. .+...|+++|.
T Consensus 83 ~T~~~~aL~~a~~~l~~~~~g~-r~~~~~~vivltdg~-~~~~---~~~~~~~~~~~gi~v~~igvG~~~~~~~L~~iA~ 157 (189)
T 1atz_A 83 PSQIGDALGFAVRYLTSEMHGA-RPGASKAVVILVTDV-SVDS---VDAAADAARSNRVTVFPIGIGDRYDAAQLRILAG 157 (189)
T ss_dssp CCCHHHHHHHHHHHHHSCCTTC-CTTSEEEEEEEECSC-CSSC---CHHHHHHHHHTTEEEEEEEESSSSCHHHHHHHTG
T ss_pred cchHHHHHHHHHHHHhccccCC-CCCCCcEEEEEeCCC-CCch---HHHHHHHHHHCCCEEEEEEcCCcCCHHHHHHHHC
Confidence 4678888888888775431111 123345 55555222 1222 4567788899999999999985 47789999999
Q ss_pred hhCCeee-ccCCcchHHHH
Q 028156 111 ITGGVHH-KPQQLDGLFQY 128 (213)
Q Consensus 111 ~TgG~Y~-~~~~~~~l~~~ 128 (213)
.++|.|. .+.+.+.|-.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~l 176 (189)
T 1atz_A 158 PAGDSNVVKLQRIEDLPTM 176 (189)
T ss_dssp GGGGGGCEEESSTTHHHHH
T ss_pred CCcccCEEEecChhhHHHH
Confidence 9987654 34555555444
No 14
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=96.70 E-value=0.0018 Score=52.50 Aligned_cols=94 Identities=6% Similarity=-0.093 Sum_probs=59.7
Q ss_pred cchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcC----------hH
Q 028156 34 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN----------SA 103 (213)
Q Consensus 34 s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e----------~~ 103 (213)
+.+..||..|+..+............+.|++|+-..+. +...+...+..+++.+|+|.+++++... ..
T Consensus 85 T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~--~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~ 162 (213)
T 1pt6_A 85 TMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESH--DNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVE 162 (213)
T ss_dssp CCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCS--CSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC--CCccHHHHHHHHHHCCCEEEEEEeccccccccccchhhHH
Confidence 56778888887654221111112334445555522211 1124566778889999999999996321 36
Q ss_pred HHHHHHHh-hCCeeeccCCcchHHHHH
Q 028156 104 FLQQASYI-TGGVHHKPQQLDGLFQYL 129 (213)
Q Consensus 104 iLqq~~~~-TgG~Y~~~~~~~~l~~~L 129 (213)
.|+++|.. |||.|+.+.+.+.|.+.+
T Consensus 163 ~L~~iA~~~~~g~~~~~~~~~~l~~i~ 189 (213)
T 1pt6_A 163 EIKSIASEPTEKHFFNVSDELALVTIV 189 (213)
T ss_dssp HHHHHSCSSHHHHEEEESSGGGGGGGH
T ss_pred HHHHHhCCCchhcEEEeCCHHHHHHHH
Confidence 89999999 899999988876654433
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=96.67 E-value=0.0074 Score=48.32 Aligned_cols=94 Identities=7% Similarity=-0.019 Sum_probs=59.6
Q ss_pred cchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCC------cC----hH
Q 028156 34 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA------QN----SA 103 (213)
Q Consensus 34 s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~------~e----~~ 103 (213)
+.+..||..|+..+-...........+.|++|+-.. +.+...+...+..+++.+|+|.+++++. .+ ..
T Consensus 84 T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~--~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~ 161 (200)
T 1v7p_C 84 TNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGE--SHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIK 161 (200)
T ss_dssp CCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSC--CSCGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHH
T ss_pred CcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCC--CCCcccHHHHHHHHHHCCCEEEEEEecccccccccchhhHHH
Confidence 668888888887532211111122334455555222 1233345677888999999999999941 12 45
Q ss_pred HHHHHHHhhCCee-eccCCcchHHHHH
Q 028156 104 FLQQASYITGGVH-HKPQQLDGLFQYL 129 (213)
Q Consensus 104 iLqq~~~~TgG~Y-~~~~~~~~l~~~L 129 (213)
.|+++|..|||.| +.+.+.+.|.+++
T Consensus 162 ~L~~iA~~~~g~~~~~~~~~~~l~~i~ 188 (200)
T 1v7p_C 162 EIKAIASIPTERYFFNVSDEAALLEKA 188 (200)
T ss_dssp HHHHHSCSSHHHHEEEESSSGGGHHHH
T ss_pred HHHHHhCCccHhcEEEcCCHHHHHHHH
Confidence 6999999999987 5677777766654
No 16
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=96.52 E-value=0.002 Score=51.30 Aligned_cols=95 Identities=7% Similarity=-0.039 Sum_probs=58.7
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcC-----hHHHHH
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN-----SAFLQQ 107 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e-----~~iLqq 107 (213)
.+.+..||..|+..+............+.|++|+-.... .+...+...+..+++.+|+|.++++|... ...|++
T Consensus 81 ~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~-~d~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~ 159 (194)
T 1mf7_A 81 RTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF-GDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNT 159 (194)
T ss_dssp CBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB-SCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-CCchhhHHHHHHHHHCCCEEEEEEecccccccccHHHHHH
Confidence 567888888888644322111111233445555532211 12333345677889999999999997432 589999
Q ss_pred HHHhh-CCeeeccCCcchHHHH
Q 028156 108 ASYIT-GGVHHKPQQLDGLFQY 128 (213)
Q Consensus 108 ~~~~T-gG~Y~~~~~~~~l~~~ 128 (213)
++..+ +|.|+.+.+.+.|.++
T Consensus 160 iA~~~~~~~~~~~~~~~~l~~~ 181 (194)
T 1mf7_A 160 IASKPPRDHVFQVNNFEALKTI 181 (194)
T ss_dssp HSCSSHHHHEEEESSGGGGGGG
T ss_pred HhCCCCcccEEEeCCHHHHHHH
Confidence 99986 5788877777665443
No 17
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=96.44 E-value=0.0073 Score=54.81 Aligned_cols=101 Identities=8% Similarity=0.075 Sum_probs=64.5
Q ss_pred ccchHhHHHHHHHHHhhhhh---cCCCCCCcEEEEEecC-CCCCcchhhHHHHHHHH----------HhCCeeeeEEEcC
Q 028156 33 CSLLSGSLSMALCYIQRVFR---SGLLHPQPRILCLQGS-PDGPEQYVAIMNAIFSA----------QRSMVPIDSCYLG 98 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~---~~~~~~~~rILiis~S-~d~~~qyi~imn~if~a----------qk~~I~Idv~~L~ 98 (213)
.+.+..||..|+..+..... .......+.|++|+-. ...+.++....+.+... ++.+|+|.++++|
T Consensus 85 ~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG 164 (497)
T 1rrk_A 85 GTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG 164 (497)
T ss_dssp CCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECS
T ss_pred ccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEEEecCC
Confidence 56788888888877743211 0001233445555522 22222444444444332 3339999999997
Q ss_pred C-cChHHHHHHHHhhCC--eeeccCCcchHHHHHHHHc
Q 028156 99 A-QNSAFLQQASYITGG--VHHKPQQLDGLFQYLLTIF 133 (213)
Q Consensus 99 ~-~e~~iLqq~~~~TgG--~Y~~~~~~~~l~~~Ll~~~ 133 (213)
. .+...|+++|..+|| .|+.+.+.+.|.+.+...+
T Consensus 165 ~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i 202 (497)
T 1rrk_A 165 PLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMI 202 (497)
T ss_dssp SSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHS
T ss_pred CccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcc
Confidence 5 477899999999999 9999999888888776544
No 18
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=96.40 E-value=0.067 Score=45.04 Aligned_cols=96 Identities=6% Similarity=0.012 Sum_probs=64.5
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCc-ChHHHHHHHHh
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYI 111 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~-e~~iLqq~~~~ 111 (213)
.+.+..||..|...+... .......+.|++|+-. .+.++..+...+..+++.+|+|.+|++|.. +..+|++++..
T Consensus 102 ~T~~~~AL~~a~~~l~~~--~~r~~~~~~iIllTDG--~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA~~ 177 (266)
T 4hqo_A 102 TTSMTAALDEVQKHLNDR--VNREKAIQLVILMTDG--VPNSKYRALEVANKLKQRNVRLAVIGIGQGINHQFNRLIAGC 177 (266)
T ss_dssp CCCHHHHHHHHHHHHHTT--CSCTTSEEEEEEEECS--CCSCHHHHHHHHHHHHHTTCEEEEEECSSSCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhhc--cccCCCCeEEEEEccC--CCCCchHHHHHHHHHHHCCCEEEEEecCcccCHHHHHHhhCC
Confidence 467889999997666542 1112233444445522 223556778899999999999999999853 67788999987
Q ss_pred h--CC--eeeccCCcchHHHHHHHH
Q 028156 112 T--GG--VHHKPQQLDGLFQYLLTI 132 (213)
Q Consensus 112 T--gG--~Y~~~~~~~~l~~~Ll~~ 132 (213)
. +| .|+.+.+.+.|.+++-..
T Consensus 178 ~~~~g~~~~~~~~d~~~L~~i~~~l 202 (266)
T 4hqo_A 178 RPREPNCKFYSYADWNEAVALIKPF 202 (266)
T ss_dssp CTTCSSCTTEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCeEEecCHHHHHHHHHHH
Confidence 5 33 666667777776655433
No 19
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=96.05 E-value=0.015 Score=53.06 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=66.5
Q ss_pred ccchHhHHHHHHHHHhhhhhcCC------CCCCcEEEEEecC-CCCCcchhhHHHHHHHH------HhCCeeeeEEEcCC
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGL------LHPQPRILCLQGS-PDGPEQYVAIMNAIFSA------QRSMVPIDSCYLGA 99 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~------~~~~~rILiis~S-~d~~~qyi~imn~if~a------qk~~I~Idv~~L~~ 99 (213)
.+.+..||..|+..+........ ....+.|++|+-. .....++....+.+..+ ++.+|+|.++++|.
T Consensus 93 gT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~ 172 (509)
T 2odp_A 93 GTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGK 172 (509)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESS
T ss_pred CccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEEEEEEcCC
Confidence 47788899888887754321100 0123445555522 21223444444444322 28899999999986
Q ss_pred --cChHHHHHHHHhhCCe--eeccCCcchHHHHHHHHc
Q 028156 100 --QNSAFLQQASYITGGV--HHKPQQLDGLFQYLLTIF 133 (213)
Q Consensus 100 --~e~~iLqq~~~~TgG~--Y~~~~~~~~l~~~Ll~~~ 133 (213)
.+...|+++|..++|. |+.+.+.+.|.+++-..+
T Consensus 173 ~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~ 210 (509)
T 2odp_A 173 LDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHML 210 (509)
T ss_dssp SCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHE
T ss_pred CcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhh
Confidence 5789999999999998 778888888888776654
No 20
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=95.92 E-value=0.02 Score=54.58 Aligned_cols=99 Identities=7% Similarity=0.052 Sum_probs=65.6
Q ss_pred ccchHhHHHHHHHHHhhhhhcC---CCCCCcEEEEEecC-CCCCcchhhHHHHHH----------HHHhCCeeeeEEEcC
Q 028156 33 CSLLSGSLSMALCYIQRVFRSG---LLHPQPRILCLQGS-PDGPEQYVAIMNAIF----------SAQRSMVPIDSCYLG 98 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~---~~~~~~rILiis~S-~d~~~qyi~imn~if----------~aqk~~I~Idv~~L~ 98 (213)
.+.+..||..|+..+....... .....+.|++|+-. .+.+.++....+.+. .+++.+|+|.++++|
T Consensus 327 gT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG 406 (741)
T 3hrz_D 327 GTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG 406 (741)
T ss_dssp CCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECS
T ss_pred ChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCeeEEEEeCC
Confidence 5678999999998884321110 01123345556532 223345555555444 567889999999997
Q ss_pred C-cChHHHHHHHHhhCCe--eeccCCcchHHHHHHH
Q 028156 99 A-QNSAFLQQASYITGGV--HHKPQQLDGLFQYLLT 131 (213)
Q Consensus 99 ~-~e~~iLqq~~~~TgG~--Y~~~~~~~~l~~~Ll~ 131 (213)
. .+...|++++..++|. |+.+.+.+.|.+.+-.
T Consensus 407 ~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~ 442 (741)
T 3hrz_D 407 PLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQ 442 (741)
T ss_dssp SSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHH
T ss_pred CcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHH
Confidence 5 5788999999999995 7777887776665544
No 21
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=94.03 E-value=0.00035 Score=55.48 Aligned_cols=86 Identities=12% Similarity=-0.001 Sum_probs=56.1
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEe-cCCCCCcch-------h-hHHHHHHHHHhCCeeeeEEEcCCcChH
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQ-GSPDGPEQY-------V-AIMNAIFSAQRSMVPIDSCYLGAQNSA 103 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis-~S~d~~~qy-------i-~imn~if~aqk~~I~Idv~~L~~~e~~ 103 (213)
.+.+..+|..|+..+.+... ....+.|++|+ |.++.+.++ . .+.+.+..+++.+|+|.+++++..+..
T Consensus 79 ~T~~~~al~~a~~~l~~~~~---~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~~~~ 155 (189)
T 2x31_A 79 GTPLASGMEMAMVTAKQARS---RGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMRPNP 155 (189)
T ss_dssp CCCCHHHHHHHHHHHHTCTT---TCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSSCS
T ss_pred CCCHHHHHHHHHHHHHhccC---CCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCCCHH
Confidence 45688889888888776321 12345566666 322222111 0 111234456788899999999755678
Q ss_pred HHHHHHHhhCCeeeccCC
Q 028156 104 FLQQASYITGGVHHKPQQ 121 (213)
Q Consensus 104 iLqq~~~~TgG~Y~~~~~ 121 (213)
.|+++|+.|||.|+.+.+
T Consensus 156 ~L~~iA~~~~G~~~~~~~ 173 (189)
T 2x31_A 156 ALVDLARTMDAHYIALPR 173 (189)
T ss_dssp SSCSTTTEEEESSTTTHH
T ss_pred HHHHHHHhcCCeEEECCC
Confidence 999999999999998754
No 22
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=92.93 E-value=0.084 Score=53.72 Aligned_cols=92 Identities=8% Similarity=0.006 Sum_probs=59.5
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCc-----ChHHHHH
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-----NSAFLQQ 107 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~-----e~~iLqq 107 (213)
.+.+..||..|+..+-...........+.|++|+-. ....+...+...+..|++.+|+|-+|+++.+ +...|++
T Consensus 206 ~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG-~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~ 284 (1095)
T 3k6s_A 206 FTYTATAIQNVVHRLFHASYGARRDAAKILIVITDG-KKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELND 284 (1095)
T ss_dssp CBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESS-CCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHT
T ss_pred CChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCC-CcCCCchhHHHHHHHHHHCCCEEEEEecccccccccCHHHHHH
Confidence 466778888887765432111112233344444422 2223445567888899999999999999865 6789999
Q ss_pred HHHhhCC-eeeccCCcchH
Q 028156 108 ASYITGG-VHHKPQQLDGL 125 (213)
Q Consensus 108 ~~~~TgG-~Y~~~~~~~~l 125 (213)
+|..++| .|+.+.+.+.|
T Consensus 285 IAs~p~g~~vf~v~d~~~L 303 (1095)
T 3k6s_A 285 IASKPSQEHIFKVEDFDAL 303 (1095)
T ss_dssp TSCSSTTTSCCCBSCSGGG
T ss_pred HHcCCCCceEEEcCCHHHH
Confidence 9999988 45555565443
No 23
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=92.49 E-value=0.42 Score=44.90 Aligned_cols=86 Identities=8% Similarity=-0.055 Sum_probs=58.8
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeee-EEEcCCcC----------
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID-SCYLGAQN---------- 101 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Id-v~~L~~~e---------- 101 (213)
.+.|..||..|.-.+.+.... ....++||++|+-..+. .....+...+..|++.+|.|+ +++++...
T Consensus 104 ~t~i~~al~~A~~~l~~~~~~-~k~~~krIiLlTDg~~~-~~~~~~~~~a~~l~~~gI~i~~vig~g~~~~~~~~~~~~~ 181 (565)
T 1jey_B 104 QADFLDALIVSMDVIQHETIG-KKFEKRHIEIFTDLSSR-FSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDG 181 (565)
T ss_dssp CCCHHHHHHHHHHHHHHHSSS-SCCSEEEEEEECCCCSC-CCCTTHHHHHHHHHHTTEEEEEEESSCCC----------C
T ss_pred cccHHHHHHHHHHHHHHHhhc-ccccccEEEEEeCCCCC-CCHHHHHHHHHHHHhcCcEEEEEeccCCCcCCcccccccc
Confidence 466888888888877664211 12345788888833222 224466778899999999999 88775320
Q ss_pred -----------------------hHHHHHHHHhhCC-----eeeccC
Q 028156 102 -----------------------SAFLQQASYITGG-----VHHKPQ 120 (213)
Q Consensus 102 -----------------------~~iLqq~~~~TgG-----~Y~~~~ 120 (213)
-..|+++++.||| .|..+.
T Consensus 182 ~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~ 228 (565)
T 1jey_B 182 PFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFS 228 (565)
T ss_dssp CCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHH
T ss_pred cccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHH
Confidence 1248999999999 887654
No 24
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=92.32 E-value=0.06 Score=34.64 Aligned_cols=24 Identities=33% Similarity=0.773 Sum_probs=20.5
Q ss_pred eeEcCCCCcccc----------CCCC--cccccccc
Q 028156 167 GYICSVCLSIYC----------KHLK--KCSTCGSV 190 (213)
Q Consensus 167 GyvCp~Clsi~C----------~~p~--~C~~C~~~ 190 (213)
-|+|++|.-+|= ++|. .||+||..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 499999999997 5776 89999964
No 25
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=92.32 E-value=0.079 Score=41.96 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=27.8
Q ss_pred CcccceeEcCCCCccccCCCC--ccccccccccccc
Q 028156 162 NTIDMGYICSVCLSIYCKHLK--KCSTCGSVFGQAQ 195 (213)
Q Consensus 162 ~~v~~GyvCp~Clsi~C~~p~--~C~~C~~~f~~~~ 195 (213)
+...+.|.|..|..+|-...+ .||.||..+...|
T Consensus 127 ~~~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 127 KVIKWRYVCIGCGRKFSTLPPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp SCCCCCEEESSSCCEESSCCGGGBCTTTCCBEEECC
T ss_pred ccccEEEECCCCCCcccCCCCCCcCCCCCCcceeCC
Confidence 456678999999999987654 8999999876555
No 26
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=91.64 E-value=2 Score=42.07 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=67.4
Q ss_pred ccccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCC-----------Cc---c----------hh----h-HHHH
Q 028156 31 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG-----------PE---Q----------YV----A-IMNA 81 (213)
Q Consensus 31 ~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~-----------~~---q----------yi----~-imn~ 81 (213)
.....+..||+.|+..+.-.. ....+||+++.+++.+ .. . |. . +-+.
T Consensus 263 ~~~~a~G~Al~~A~~lL~~~~----~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~l 338 (769)
T 2nut_A 263 RPLRSSGVALSIAVGLLECTF----PNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEAL 338 (769)
T ss_dssp CCCCCHHHHHHHHHHHHHHHS----CSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHhhcc----cCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHH
Confidence 446678999999999887542 2346789988865311 00 0 10 0 2236
Q ss_pred HHHHHhCCeeeeEEEcCCc--ChHHHHHHHHhhCCeeeccCCcc--hHHHHHHHHc
Q 028156 82 IFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQLD--GLFQYLLTIF 133 (213)
Q Consensus 82 if~aqk~~I~Idv~~L~~~--e~~iLqq~~~~TgG~Y~~~~~~~--~l~~~Ll~~~ 133 (213)
...|.+++|.||++..+.. +..-++.+++.|||..+...+-. .+.+-|...|
T Consensus 339 a~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~ 394 (769)
T 2nut_A 339 ANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVF 394 (769)
T ss_dssp HHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTT
T ss_pred HHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHH
Confidence 6778889999999998632 67899999999999988776533 3455555444
No 27
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=91.27 E-value=0.095 Score=42.31 Aligned_cols=26 Identities=27% Similarity=0.652 Sum_probs=21.6
Q ss_pred cceeEcCCCCccccC-CCCcccccccc
Q 028156 165 DMGYICSVCLSIYCK-HLKKCSTCGSV 190 (213)
Q Consensus 165 ~~GyvCp~Clsi~C~-~p~~C~~C~~~ 190 (213)
...|+|++|.-|+-. .|..||+||..
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 457999999999874 67899999953
No 28
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=90.73 E-value=1.4 Score=34.25 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=40.3
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCc-ChHHHHH
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQ 107 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~-e~~iLqq 107 (213)
.+.+..||..|+..+............+.|++|+-.. . .+...+...+..+++.+|+|.++++|.. +..+|+.
T Consensus 97 ~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~-~-~~~~~~~~~~~~l~~~gi~v~~igvG~~~~~~~l~~ 170 (178)
T 2xgg_A 97 STNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGE-S-DSDFRTVRAAKEIRELGGIVTVLAVGHYVAAALVPR 170 (178)
T ss_dssp CCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSC-C-CHHHHHSHHHHHHHHTTCEEEEEECC----------
T ss_pred CccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCC-C-CCCccHHHHHHHHHHCCCEEEEEEcCCcCCHHHHhc
Confidence 5678999999988764421111123344455555222 1 1222356778888999999999999743 4445544
No 29
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=90.20 E-value=0.9 Score=36.03 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=32.7
Q ss_pred CCeeeeEEEcC-CcChHHHHHHHHhhCCeeeccCCcchHHHHHHH
Q 028156 88 SMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 131 (213)
Q Consensus 88 ~~I~Idv~~L~-~~e~~iLqq~~~~TgG~Y~~~~~~~~l~~~Ll~ 131 (213)
.+|+|-++++| ..+...|++++. .++.| .+.+.+.|.+.+..
T Consensus 146 ~~v~v~~iGiG~~~~~~~L~~iA~-~~~~~-~~~~~~~L~~~~~~ 188 (199)
T 3zqk_A 146 GDIQVVPIGVGPNANVQELERIGW-PNAPI-LIQDFETLPREAPD 188 (199)
T ss_dssp TTEEEEEEEESTTCCHHHHHHHHT-TSCCE-EESCTTTHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHhC-CCceE-EeCCHHHHHHHHHH
Confidence 79999999997 568899999998 44544 67888777666543
No 30
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=89.81 E-value=0.11 Score=42.51 Aligned_cols=24 Identities=17% Similarity=0.420 Sum_probs=21.1
Q ss_pred eeEcCCCCcccc--CCCCcccccccc
Q 028156 167 GYICSVCLSIYC--KHLKKCSTCGSV 190 (213)
Q Consensus 167 GyvCp~Clsi~C--~~p~~C~~C~~~ 190 (213)
-|+|++|.-++= +.|..||+||..
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 699999999985 578899999984
No 31
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=89.68 E-value=0.11 Score=40.73 Aligned_cols=85 Identities=7% Similarity=-0.008 Sum_probs=47.1
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcCh-----HHHHH
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS-----AFLQQ 107 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e~-----~iLqq 107 (213)
.+.+..||..|+..+-...........+.|++++-.. .... .+. +++.+|+|.++++|.... ..|++
T Consensus 78 ~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~-~~~~-~~~------~~~~~i~i~~igvG~~~~~~~~~~~L~~ 149 (179)
T 1mjn_A 78 LTNTFGAINYVATEVFREELGARPDATKVLIIITDGE-ATDS-GNI------DAAKDIIRYIIGIGKHFQTKESQETLHK 149 (179)
T ss_dssp CCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSC-CSSC-SCC------GGGTTSEEEEEEESGGGCSHHHHHTTGG
T ss_pred CChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCC-CCCC-cch------HHHCCCEEEEEEccccccccccHHHHHH
Confidence 4567777777775332211111112233444455221 1111 111 267899999999974432 68999
Q ss_pred HHHhhCCee-eccCCcchH
Q 028156 108 ASYITGGVH-HKPQQLDGL 125 (213)
Q Consensus 108 ~~~~TgG~Y-~~~~~~~~l 125 (213)
+|..++|.| +.+.+.+.|
T Consensus 150 iA~~~~~~~~~~~~~~~~L 168 (179)
T 1mjn_A 150 FASKPASEFVKILDTFEKL 168 (179)
T ss_dssp GSCSCHHHHEEEESSGGGS
T ss_pred HhCCccHhcEEEeCCHHHH
Confidence 999998854 555665443
No 32
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=89.26 E-value=2.3 Score=41.92 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=57.9
Q ss_pred ccccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCC--------CCc---------c---hh-----hHHHHHHHH
Q 028156 31 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPD--------GPE---------Q---YV-----AIMNAIFSA 85 (213)
Q Consensus 31 ~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d--------~~~---------q---yi-----~imn~if~a 85 (213)
.....+..||+.|+..+... .+||+++.+++- ... + |. -+-+....+
T Consensus 303 ~~~~a~G~AL~~A~~lL~~~--------GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~ 374 (810)
T 1pcx_A 303 ITNFALGPALKSAYHLIGGV--------GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDC 374 (810)
T ss_dssp CCCCCHHHHHHHHHHHHTTT--------CEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhc--------CCEEEEEecCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHH
Confidence 34677999999999888642 368888886531 000 0 10 123456677
Q ss_pred HhCCeeeeEEEcCCc--ChHHHHHHHHhhCCeeeccCC
Q 028156 86 QRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 121 (213)
Q Consensus 86 qk~~I~Idv~~L~~~--e~~iLqq~~~~TgG~Y~~~~~ 121 (213)
.+++|.||++..+.. +..-++.+++.|||.-+...+
T Consensus 375 ~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~ 412 (810)
T 1pcx_A 375 SKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPG 412 (810)
T ss_dssp HHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEET
T ss_pred HHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCC
Confidence 899999999988532 678899999999998766543
No 33
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=89.23 E-value=0.16 Score=33.67 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=20.5
Q ss_pred eeEcCCCCccccC-----------------CCC--cccccccc
Q 028156 167 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 190 (213)
Q Consensus 167 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 190 (213)
.|+|++|.-+|-+ +|. .||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4999999999985 676 89999974
No 34
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=88.51 E-value=0.19 Score=36.09 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=20.5
Q ss_pred eeEcCCCCccccC-----------------CCC--cccccccc
Q 028156 167 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 190 (213)
Q Consensus 167 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 190 (213)
-|+|++|.-||-. +|. .||+||..
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 6999999999984 665 79999973
No 35
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=88.47 E-value=6.1 Score=38.62 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=58.7
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecC-CCC-C-------c----------------chhhHHHHHHHHHh
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGS-PDG-P-------E----------------QYVAIMNAIFSAQR 87 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S-~d~-~-------~----------------qyi~imn~if~aqk 87 (213)
++.++.||..|+-.+... ...+||+++.++ +.. + . +---+-+....+.+
T Consensus 288 ~t~~g~al~aa~~~l~~~------~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~ 361 (766)
T 3eh2_A 288 ETVFVPVIQAGMEALKAA------ECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVA 361 (766)
T ss_dssp CCCSHHHHHHHHHHHHHT------TCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccC------CCCcEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHHh
Confidence 567888898888887652 346788888766 321 0 0 00112346677889
Q ss_pred CCeeeeEEEcCCc--ChHHHHHHHHhhCCeeeccCC
Q 028156 88 SMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 121 (213)
Q Consensus 88 ~~I~Idv~~L~~~--e~~iLqq~~~~TgG~Y~~~~~ 121 (213)
++|.||++..+.. +..-++.++..|||.-+...+
T Consensus 362 ~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~ 397 (766)
T 3eh2_A 362 QGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYAS 397 (766)
T ss_dssp HTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT
T ss_pred CCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCC
Confidence 9999999988532 788999999999998776654
No 36
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=88.00 E-value=5.4 Score=39.04 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=58.0
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecC-CCC--C----------------------cchhhHHHHHHHHHh
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGS-PDG--P----------------------EQYVAIMNAIFSAQR 87 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S-~d~--~----------------------~qyi~imn~if~aqk 87 (213)
++.++.||..|+-.+... ...+||+++.++ +.. + .+-.-+-+....+.+
T Consensus 292 ~t~~g~al~aa~~~l~~~------~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~ 365 (770)
T 3efo_B 292 ETVFAPVIQAGMEALKAA------DCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVA 365 (770)
T ss_dssp CCCCHHHHHHHHHHHHHH------TCCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccC------CCCcEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHHH
Confidence 566888898888887653 235688888765 321 0 000112245677899
Q ss_pred CCeeeeEEEcCCc--ChHHHHHHHHhhCCeeeccCC
Q 028156 88 SMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 121 (213)
Q Consensus 88 ~~I~Idv~~L~~~--e~~iLqq~~~~TgG~Y~~~~~ 121 (213)
++|.||++..+.. +..-++.++..|||.-+...+
T Consensus 366 ~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~ 401 (770)
T 3efo_B 366 HGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNN 401 (770)
T ss_dssp TTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTT
T ss_pred cCeEEEEEEecCCccChHHHHHHHhhcCceEEEecC
Confidence 9999999988533 678899999999998776655
No 37
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=87.49 E-value=0.24 Score=32.48 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=19.7
Q ss_pred eeEcCCCCccccC-----------------CCC--cccccccc
Q 028156 167 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 190 (213)
Q Consensus 167 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 190 (213)
-|+|.+|.-+|=. +|. .||+||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 3999999999974 565 79999973
No 38
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=87.40 E-value=11 Score=36.66 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhhhccCCCCCCCcccccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCC-----------Cc---
Q 028156 8 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG-----------PE--- 73 (213)
Q Consensus 8 i~~~l~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~-----------~~--- 73 (213)
..+.|.+++++-....-.-.........+..||+.|...+.-.. ....+||+++.+++-+ ..
T Consensus 234 ~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~----~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~r 309 (768)
T 1m2o_A 234 VEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCY----KNIPARIILFASGPGTVAPGLIVNSELKDPLR 309 (768)
T ss_dssp HHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHC----TTSCCEEEEEESSCCCSSSSCCSCSBTTSCCC
T ss_pred HHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhcc----CCCCcEEEEEeCCCCCCCCccccccccccccc
Confidence 34456666666433110000012456678999999999887532 2345789988865310 00
Q ss_pred chhh---------------HHHHHHHHHhCCeeeeEEEcCCc--ChHHHHHHHHhhCCeeeccCCc--chHHHHHHHHc
Q 028156 74 QYVA---------------IMNAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQL--DGLFQYLLTIF 133 (213)
Q Consensus 74 qyi~---------------imn~if~aqk~~I~Idv~~L~~~--e~~iLqq~~~~TgG~Y~~~~~~--~~l~~~Ll~~~ 133 (213)
.+.+ +-+....+.+++|.||++..+.. +..-++.++..|||.-+...+- ..+.+-|...|
T Consensus 310 s~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l 388 (768)
T 1m2o_A 310 SHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLF 388 (768)
T ss_dssp CHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTT
T ss_pred cccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHH
Confidence 0111 12356677889999999998532 6789999999999976655443 33555555444
No 39
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=87.31 E-value=0.25 Score=32.73 Aligned_cols=24 Identities=38% Similarity=0.755 Sum_probs=19.5
Q ss_pred eeEcCCCCccccC-----------------CCC--cccccccc
Q 028156 167 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 190 (213)
Q Consensus 167 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 190 (213)
-|+|++|.-+|=+ +|. .||+||..
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 4999999999973 454 79999975
No 40
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=87.27 E-value=2.3 Score=42.57 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=58.5
Q ss_pred ccccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCC--------CCc---------c---h-----hhHHHHHHHH
Q 028156 31 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPD--------GPE---------Q---Y-----VAIMNAIFSA 85 (213)
Q Consensus 31 ~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d--------~~~---------q---y-----i~imn~if~a 85 (213)
.....+..||+.|+..+... ..||+++.+++- ..+ + + .-+-+....+
T Consensus 419 ~~~~~~G~AL~aA~~lL~~~--------GGrI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~ 490 (926)
T 1m2v_B 419 ITNFALGPALKSAYHLIGGV--------GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDC 490 (926)
T ss_dssp CCCCCHHHHHHHHHHHHTTT--------CEEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhh--------CCEEEEEecCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHH
Confidence 34677999999999888642 468888886531 000 1 1 0123456778
Q ss_pred HhCCeeeeEEEcCCc--ChHHHHHHHHhhCCeeeccCC
Q 028156 86 QRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 121 (213)
Q Consensus 86 qk~~I~Idv~~L~~~--e~~iLqq~~~~TgG~Y~~~~~ 121 (213)
.+++|.||++..+.. +..-++.++..|||.-+...+
T Consensus 491 ~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~ 528 (926)
T 1m2v_B 491 SKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPG 528 (926)
T ss_dssp HHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEES
T ss_pred HHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCC
Confidence 889999999988532 788999999999998666543
No 41
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=86.25 E-value=0.4 Score=31.38 Aligned_cols=24 Identities=33% Similarity=0.768 Sum_probs=19.4
Q ss_pred eeEcCCCCccccC-----------------CCC--cccccccc
Q 028156 167 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 190 (213)
Q Consensus 167 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 190 (213)
-|+|++|.-+|=+ +|. .||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 4999999999973 455 79999973
No 42
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=86.24 E-value=0.32 Score=40.19 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.3
Q ss_pred ceeEcCCCCccccC-CCCcccccccc
Q 028156 166 MGYICSVCLSIYCK-HLKKCSTCGSV 190 (213)
Q Consensus 166 ~GyvCp~Clsi~C~-~p~~C~~C~~~ 190 (213)
.-|+|++|.-++=- .|-.||+||..
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCC
Confidence 36999999999864 45699999974
No 43
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=85.91 E-value=0.34 Score=33.66 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=20.3
Q ss_pred eeEcCCCCccccC-----------------CCC--cccccccc
Q 028156 167 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 190 (213)
Q Consensus 167 GyvCp~Clsi~C~-----------------~p~--~C~~C~~~ 190 (213)
-|+|++|.-+|=. +|. .||+||..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 5999999999974 666 79999984
No 44
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=85.85 E-value=9.9 Score=37.10 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=58.2
Q ss_pred ccccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCC-----------CCcchh-------------hHHHHHHHHH
Q 028156 31 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPD-----------GPEQYV-------------AIMNAIFSAQ 86 (213)
Q Consensus 31 ~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d-----------~~~qyi-------------~imn~if~aq 86 (213)
...+.+..||+.|+..+.. ..+||+++.+++- ....+. -+-+....+.
T Consensus 268 ~~~~~~G~AL~aA~~ll~~--------~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~ 339 (751)
T 3eh1_A 268 ETHSALGPALQAAFKLMSP--------TGGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCS 339 (751)
T ss_dssp CCCCCHHHHHHHHHHHHTT--------TCEEEEEEECSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHhhc--------CCCEEEEEecCCCCCCCCccccccccccCCCchhhhhhcchHHHHHHHHHHHH
Confidence 3467788999999887743 3468888876521 011010 1234567788
Q ss_pred hCCeeeeEEEcCCc--ChHHHHHHHHhhCCeeeccCC
Q 028156 87 RSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 121 (213)
Q Consensus 87 k~~I~Idv~~L~~~--e~~iLqq~~~~TgG~Y~~~~~ 121 (213)
+++|.||++..+.. +..-++.++..|||.-+...+
T Consensus 340 ~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~ 376 (751)
T 3eh1_A 340 GQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPS 376 (751)
T ss_dssp HTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTT
T ss_pred hcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCC
Confidence 99999999988532 788999999999998776654
No 45
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=84.97 E-value=0.35 Score=35.13 Aligned_cols=25 Identities=32% Similarity=0.797 Sum_probs=20.3
Q ss_pred ceeEcCCCCcccc-----------------CCCC--cccccccc
Q 028156 166 MGYICSVCLSIYC-----------------KHLK--KCSTCGSV 190 (213)
Q Consensus 166 ~GyvCp~Clsi~C-----------------~~p~--~C~~C~~~ 190 (213)
.-|+|.+|.-+|- ++|. .||+||..
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 4699999999987 4555 79999973
No 46
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=78.36 E-value=1.9 Score=29.79 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=24.8
Q ss_pred ccceeEcCCCCccccCC---CCccccccccccccc
Q 028156 164 IDMGYICSVCLSIYCKH---LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 164 v~~GyvCp~Clsi~C~~---p~~C~~C~~~f~~~~ 195 (213)
..+-|+|+.|...|-.. +..|+-||.+..-..
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEeEec
Confidence 46789999999997754 468999999554433
No 47
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.68 E-value=0.93 Score=30.47 Aligned_cols=33 Identities=30% Similarity=0.901 Sum_probs=22.4
Q ss_pred eeeeccC-cccce-eEcCCCCccccC--------CCCcccccc
Q 028156 156 SCFCHKN-TIDMG-YICSVCLSIYCK--------HLKKCSTCG 188 (213)
Q Consensus 156 ~C~CH~~-~v~~G-yvCp~Clsi~C~--------~p~~C~~C~ 188 (213)
.||-..+ +.+.+ |.|+.|...||- ---.||.|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 4765544 34555 999999999993 224677763
No 48
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=75.69 E-value=1.4 Score=33.01 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=27.7
Q ss_pred cccceeEcCCCCcccc---CCCCccccccccccccc
Q 028156 163 TIDMGYICSVCLSIYC---KHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 163 ~v~~GyvCp~Clsi~C---~~p~~C~~C~~~f~~~~ 195 (213)
+.-.-|.|-.|.-.|+ ..|..||.|++..+..|
T Consensus 63 L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFKAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp EEECCCBBTTTCCBCCCCSSCCSSCSSSCCCCBCCC
T ss_pred EEEECcChhhCcCeecccCCCCCCCcCCCCCccCCc
Confidence 4445689999999997 45799999999999887
No 49
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=74.08 E-value=1.2 Score=26.76 Aligned_cols=10 Identities=40% Similarity=1.282 Sum_probs=8.0
Q ss_pred ceeEcCCCCc
Q 028156 166 MGYICSVCLS 175 (213)
Q Consensus 166 ~GyvCp~Cls 175 (213)
-||+||.|..
T Consensus 4 EGFiCP~C~~ 13 (34)
T 3mjh_B 4 EGFICPQCMK 13 (34)
T ss_dssp EEEECTTTCC
T ss_pred cccCCcHHHH
Confidence 3899999974
No 50
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=72.78 E-value=7.8 Score=36.64 Aligned_cols=65 Identities=12% Similarity=0.010 Sum_probs=44.4
Q ss_pred ccchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcc----hhhHHHHHHHHHhCCeeeeEEEcCCc
Q 028156 33 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQ----YVAIMNAIFSAQRSMVPIDSCYLGAQ 100 (213)
Q Consensus 33 ~s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~q----yi~imn~if~aqk~~I~Idv~~L~~~ 100 (213)
.+.|..||..|.-.+.+. .....++||++|+-..++... .......+..|++.+|.|.+++++..
T Consensus 140 ~t~l~daL~~a~~~f~~~---~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 140 DYSLSEVLWVCANLFSDV---QFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp CCCHHHHHHHHHHHHHTC---SSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred CCCHHHHHHHHHHHHHhh---chhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 467888888888776543 112247788888854332211 23567788899999999999999743
No 51
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.10 E-value=3.8 Score=26.66 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=21.4
Q ss_pred ceeEcCCCCccccCCCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p~~C~~C~~~f~~~~ 195 (213)
--++||.|.+..-.--..|..||.+ ..-|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~-~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK-RLRP 41 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC-CCEE
T ss_pred CCccCCCCCCcCCCCceecCCCCCc-cccc
Confidence 3589999999933333799999988 4444
No 52
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=67.44 E-value=2.4 Score=29.68 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=24.2
Q ss_pred eeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
-|+|++|.-.|-. -|-.|..|+..|....
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~ 70 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSP 70 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHH
T ss_pred CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHH
Confidence 4999999998873 3568999999998765
No 53
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=63.60 E-value=2.6 Score=25.61 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=21.3
Q ss_pred eeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
.|.|+.|...|-. -|-.|+.|+..|....
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 46 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKT 46 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHH
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHH
Confidence 5889999887762 3568999998887644
No 54
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=62.93 E-value=3.3 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.778 Sum_probs=23.6
Q ss_pred eeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
-|.|+.|.-.|-. -|=.|+.||..|....
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~ 46 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQS 46 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHH
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHH
Confidence 4999999988873 4668999999998754
No 55
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=62.52 E-value=3.3 Score=26.37 Aligned_cols=31 Identities=19% Similarity=0.570 Sum_probs=24.1
Q ss_pred cceeEcCCCCcccc-----------CCCCccccccccccccc
Q 028156 165 DMGYICSVCLSIYC-----------KHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 165 ~~GyvCp~Clsi~C-----------~~p~~C~~C~~~f~~~~ 195 (213)
...|.|+.|...|- +-|-.|+.||..|....
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCc
Confidence 34699999987654 34568999999998765
No 56
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=59.27 E-value=3.5 Score=25.02 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=19.7
Q ss_pred eEcCCCCccccC--------------CCCccccccccccccc
Q 028156 168 YICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 168 yvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
|.|+.|...|-. -|-.|+.|+..|....
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 43 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKG 43 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHH
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHH
Confidence 678888776652 3457888998887644
No 57
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=58.27 E-value=8.3 Score=23.44 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=20.7
Q ss_pred cceeEcCCCCccccC---------------CCCccccccccccc
Q 028156 165 DMGYICSVCLSIYCK---------------HLKKCSTCGSVFGQ 193 (213)
Q Consensus 165 ~~GyvCp~Clsi~C~---------------~p~~C~~C~~~f~~ 193 (213)
..-|.|+.|...|-. -|-.|+.|+..|.+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 345889998776542 34589999988864
No 58
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=58.14 E-value=6.3 Score=25.31 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=22.4
Q ss_pred eEcCCCCccccC-----CC-Cccccccccccccc
Q 028156 168 YICSVCLSIYCK-----HL-KKCSTCGSVFGQAQ 195 (213)
Q Consensus 168 yvCp~Clsi~C~-----~p-~~C~~C~~~f~~~~ 195 (213)
|.|=+|...|-. +| ..||.||-+.....
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 889999998885 34 68999999888766
No 59
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=57.07 E-value=15 Score=34.01 Aligned_cols=58 Identities=10% Similarity=-0.063 Sum_probs=36.1
Q ss_pred CcEEEEEecCCCCCcchhhHHHHHHHHHhC---CeeeeEEEcCCc------------------ChHHHHHHHHhhCCeee
Q 028156 59 QPRILCLQGSPDGPEQYVAIMNAIFSAQRS---MVPIDSCYLGAQ------------------NSAFLQQASYITGGVHH 117 (213)
Q Consensus 59 ~~rILiis~S~d~~~qyi~imn~if~aqk~---~I~Idv~~L~~~------------------e~~iLqq~~~~TgG~Y~ 117 (213)
..+|++|+-...... .+..+..+..+++. ++++-+++++.. +-.+|+.+++.|||.|+
T Consensus 457 ~~~vIliTD~~~~~g-~~~~~~al~~~r~~~~~~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~~ 535 (535)
T 2nvo_A 457 VDTFVVYTDNETWAG-QVHPTVALDQYAQKMGRAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEVL 535 (535)
T ss_dssp CSEEEEEESSCCCCC-SSCHHHHHHHHHHHHSCCCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC-
T ss_pred CCEEEEEeCCCccCC-CCCHHHHHHHHHHhhCCCCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCcC
Confidence 457777873321111 12344566666654 788888888631 12579999999999985
No 60
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.72 E-value=5.6 Score=25.35 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=22.8
Q ss_pred ceeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
.-|.|+.|...|-. -+-.|+.|+..|....
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 51 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPS 51 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHH
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHH
Confidence 35999999887752 3458999999998654
No 61
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=55.36 E-value=8.1 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.7
Q ss_pred eEcCCCCccccCCCCccccccccccccc
Q 028156 168 YICSVCLSIYCKHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 168 yvCp~Clsi~C~~p~~C~~C~~~f~~~~ 195 (213)
-+|+.|.... +...||.||....++.
T Consensus 7 r~C~~CgvYT--Lk~~CP~CG~~T~~~h 32 (60)
T 2apo_B 7 KKCPKCGLYT--LKEICPKCGEKTVIPK 32 (60)
T ss_dssp EECTTTCCEE--SSSBCSSSCSBCBCCC
T ss_pred eeCCCCCCEe--ccccCcCCCCcCCCCC
Confidence 4799997654 3778999999998876
No 62
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=55.24 E-value=4.5 Score=24.83 Aligned_cols=28 Identities=21% Similarity=0.791 Sum_probs=20.2
Q ss_pred eEcCCCCccccC--------------CCCccccccccccccc
Q 028156 168 YICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 168 yvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
|.|+.|...|-. -|-.|+.|+..|....
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 44 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD 44 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHH
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence 778888776652 2457999999887654
No 63
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.17 E-value=5.7 Score=25.56 Aligned_cols=30 Identities=30% Similarity=0.669 Sum_probs=23.2
Q ss_pred ceeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
..|.|+.|.-.|-. -|-.|+.|+..|....
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~ 56 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS 56 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHH
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHH
Confidence 46999999887752 3568999999998654
No 64
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.86 E-value=3.9 Score=27.14 Aligned_cols=22 Identities=32% Similarity=0.892 Sum_probs=17.5
Q ss_pred eee-eccCcccceeEcCCCCccccCC
Q 028156 156 SCF-CHKNTIDMGYICSVCLSIYCKH 180 (213)
Q Consensus 156 ~C~-CH~~~v~~GyvCp~Clsi~C~~ 180 (213)
.|. |+. ..-|.||+|...||.+
T Consensus 14 ~C~vC~~---~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 14 VCVICLE---KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCTTTCS---CCSEECTTTCCEESSH
T ss_pred ccCcCcC---CCeeeCCCCCCCeeCH
Confidence 454 543 6789999999999976
No 65
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=53.49 E-value=3.9 Score=27.44 Aligned_cols=28 Identities=29% Similarity=0.765 Sum_probs=19.8
Q ss_pred ceee-eeccC-cccceeEcCCCCccccCCC
Q 028156 154 RASC-FCHKN-TIDMGYICSVCLSIYCKHL 181 (213)
Q Consensus 154 ~a~C-~CH~~-~v~~GyvCp~Clsi~C~~p 181 (213)
+..| +|+.. ....-|.||+|...||.+.
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~ 40 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLR 40 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHH
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChH
Confidence 3466 45532 3456899999999999863
No 66
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.10 E-value=9.9 Score=25.24 Aligned_cols=31 Identities=13% Similarity=0.424 Sum_probs=22.5
Q ss_pred eEcCCCCccccCCCCccccccccccccccCC
Q 028156 168 YICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 198 (213)
Q Consensus 168 yvCp~Clsi~C~~p~~C~~C~~~f~~~~~~~ 198 (213)
..|..|+...-+....||+|+..+....+.+
T Consensus 39 ~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 39 LFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp EEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred eecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3566666665556689999999998776544
No 67
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=52.61 E-value=3.5 Score=25.94 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=21.1
Q ss_pred ceeEcCCCCc-ccc--CC--CCcccccccccccccc
Q 028156 166 MGYICSVCLS-IYC--KH--LKKCSTCGSVFGQAQT 196 (213)
Q Consensus 166 ~GyvCp~Cls-i~C--~~--p~~C~~C~~~f~~~~~ 196 (213)
.-++||.|.+ -+= .- --+|..||+.+.....
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~i 39 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENII 39 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCccccccc
Confidence 3578999987 221 11 2589999998876653
No 68
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=51.60 E-value=4.8 Score=30.12 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=5.8
Q ss_pred Cccccccccccc
Q 028156 182 KKCSTCGSVFGQ 193 (213)
Q Consensus 182 ~~C~~C~~~f~~ 193 (213)
-.|+.||..|..
T Consensus 79 ~~C~~C~k~F~~ 90 (133)
T 2lt7_A 79 YQCLACGKSFIN 90 (133)
T ss_dssp EEESSSCCEESS
T ss_pred ccCCCCCCCcCC
Confidence 345555555543
No 69
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.12 E-value=2.9 Score=29.12 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=23.7
Q ss_pred ceeEcCCCCcccc----------------CCCCccccccccccccc
Q 028156 166 MGYICSVCLSIYC----------------KHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C----------------~~p~~C~~C~~~f~~~~ 195 (213)
.-|.|+.|.-.|- +-|-.|..|+..|....
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~ 68 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKA 68 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHH
T ss_pred CCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHH
Confidence 4699999998887 23458999999998654
No 70
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=48.59 E-value=6.6 Score=25.30 Aligned_cols=30 Identities=23% Similarity=0.668 Sum_probs=22.7
Q ss_pred ceeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
..|.|+.|...|-. -|-.|..|+..|....
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~ 59 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHH
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHH
Confidence 35899999887752 3458999999998654
No 71
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=48.36 E-value=11 Score=24.81 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=11.1
Q ss_pred CCccccccccccccc
Q 028156 181 LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 181 p~~C~~C~~~f~~~~ 195 (213)
...||+|+..+....
T Consensus 53 ~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 53 KSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCSSSCCCCCSSG
T ss_pred CCcCCCCCCcCCHhh
Confidence 467999988887543
No 72
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=48.28 E-value=9.8 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.2
Q ss_pred ccceeEcCCCCcccc--CCCC-cccccccccc
Q 028156 164 IDMGYICSVCLSIYC--KHLK-KCSTCGSVFG 192 (213)
Q Consensus 164 v~~GyvCp~Clsi~C--~~p~-~C~~C~~~f~ 192 (213)
+..-|.|..|...|= +.+. .||.||....
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 345699999998876 3456 8999998744
No 73
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=47.89 E-value=88 Score=28.65 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=36.4
Q ss_pred cchHhHHHHHHHHHhhhhhcCCCCCCcEEEEEecCCCCCcchhhHHHHHHH-HH--hCCeeeeEEEcCCcC---------
Q 028156 34 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFS-AQ--RSMVPIDSCYLGAQN--------- 101 (213)
Q Consensus 34 s~L~~aLs~ALc~inr~~~~~~~~~~~rILiis~S~d~~~qyi~imn~if~-aq--k~~I~Idv~~L~~~e--------- 101 (213)
+.+..+|..|+.. ......|++|+-..+.. .....+..+.. ++ ..+|++-+|+++...
T Consensus 445 T~i~~aL~~a~~~---------~~~~~~iIliTDg~~~~-g~~~~~~~l~~~~~~~~~~v~l~~igig~~~~~~~~~~~~ 514 (538)
T 1yvr_A 445 TDCALPMLWAQKT---------NTAADIFIVFTDCETNV-EDVHPATALKQYREKMGIPAKLIVCAMTSNGFSIADPDDR 514 (538)
T ss_dssp CCTTHHHHHHHHT---------TCCCSEEEEEECCCCCS-SSCCHHHHHHHHHHHHTCCCEEEEEECSSSSEESSCTTCT
T ss_pred CcHHHHHHHHHhc---------cCCCCEEEEEcCCCCCC-CCCCHHHHHHHHHHHhCCCcEEEEEEecCCCCcccCCCCC
Confidence 4466666666432 12335777777332221 11223344422 22 334555777776321
Q ss_pred ---------hHHHHHHHHhhCCee
Q 028156 102 ---------SAFLQQASYITGGVH 116 (213)
Q Consensus 102 ---------~~iLqq~~~~TgG~Y 116 (213)
-.+|+.+++.|||.|
T Consensus 515 ~~~~i~g~~e~~l~~Ia~~~~G~~ 538 (538)
T 1yvr_A 515 GMLDICGFDSGALDVIRNFTLDLI 538 (538)
T ss_dssp TEEEEETTCTTHHHHHHHHHTTC-
T ss_pred CceeeccCCHHHHHHHHHHhCCCC
Confidence 245777777777764
No 74
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=47.73 E-value=8.2 Score=22.22 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=6.8
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 10 ~~~C~~C~k~f~ 21 (45)
T 2epq_A 10 PYSCPVCGLRFK 21 (45)
T ss_dssp SSEETTTTEECS
T ss_pred CCcCCCCCcccC
Confidence 366666655554
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=47.46 E-value=4.6 Score=29.75 Aligned_cols=37 Identities=24% Similarity=0.578 Sum_probs=29.5
Q ss_pred eeEcCCCCccccCCCCccccccccccccccCCCCCcc
Q 028156 167 GYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSA 203 (213)
Q Consensus 167 GyvCp~Clsi~C~~p~~C~~C~~~f~~~~~~~~~~~~ 203 (213)
.|.|=.||++.=.....|++|+-.|.........|++
T Consensus 47 HYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PSA 83 (99)
T 2ko5_A 47 HYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPTA 83 (99)
T ss_dssp CEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCCC
T ss_pred hhhHHHHHHHHHhhccCCcccCCcCCcceecCcCCCC
Confidence 5999999999999999999999888765533334444
No 76
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.36 E-value=7.3 Score=26.53 Aligned_cols=26 Identities=35% Similarity=0.787 Sum_probs=18.8
Q ss_pred ceeeeec-cCcccceeEcCCCCccccCC
Q 028156 154 RASCFCH-KNTIDMGYICSVCLSIYCKH 180 (213)
Q Consensus 154 ~a~C~CH-~~~v~~GyvCp~Clsi~C~~ 180 (213)
...|.-. +++.-+||.| +|.-.||..
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred CCcChhhCCcccccCeEe-ecCCEeccc
Confidence 3456544 4555569999 999999975
No 77
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.22 E-value=6.9 Score=24.64 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.2
Q ss_pred ceeEcCCCCcccc-------CCCCccccccccccccc
Q 028156 166 MGYICSVCLSIYC-------KHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C-------~~p~~C~~C~~~f~~~~ 195 (213)
..|.|+.|...|- +-+-.|+.|+..|....
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~~~ 53 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEA 53 (73)
T ss_dssp SEEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCC
T ss_pred CCeeCCcccchhCCHHHhCcCCCCCCCCCChhhcCHH
Confidence 4699999987775 34668999999998766
No 78
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=46.78 E-value=11 Score=26.38 Aligned_cols=31 Identities=19% Similarity=0.620 Sum_probs=19.8
Q ss_pred CcccceeEcCCCC------ccccC---CCCcccccccccc
Q 028156 162 NTIDMGYICSVCL------SIYCK---HLKKCSTCGSVFG 192 (213)
Q Consensus 162 ~~v~~GyvCp~Cl------si~C~---~p~~C~~C~~~f~ 192 (213)
..+..-||||+|. +-|+. .-+.|..||.+=.
T Consensus 12 ~~~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 12 ADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp ---CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred cccccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 3466789999998 33332 2367999997644
No 79
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=46.69 E-value=17 Score=24.84 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=12.7
Q ss_pred CCccccccccccccccC
Q 028156 181 LKKCSTCGSVFGQAQTQ 197 (213)
Q Consensus 181 p~~C~~C~~~f~~~~~~ 197 (213)
...||+|...+...++.
T Consensus 50 ~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 50 NGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CSBCTTTCCBCSSCSSC
T ss_pred CCCCCCCCCccCCCchh
Confidence 46799999888876643
No 80
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.30 E-value=13 Score=24.72 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=12.0
Q ss_pred CCccccccccccccc
Q 028156 181 LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 181 p~~C~~C~~~f~~~~ 195 (213)
...||+|+..+....
T Consensus 59 ~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 59 ESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCTTTCCSSCSSS
T ss_pred CCcCCCCCCccCHHh
Confidence 578999999888654
No 81
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.29 E-value=12 Score=26.09 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=23.8
Q ss_pred ceeEcCCCCccc-c-------------CCCCccccccccccccc
Q 028156 166 MGYICSVCLSIY-C-------------KHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~-C-------------~~p~~C~~C~~~f~~~~ 195 (213)
.-|.|+.|...| - +-|-.|..||..|....
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~ 76 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLA 76 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHH
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHH
Confidence 359999999988 3 34568999999998654
No 82
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=44.60 E-value=16 Score=20.57 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=21.0
Q ss_pred ceeEcCCCCccccCCCCccccccccc
Q 028156 166 MGYICSVCLSIYCKHLKKCSTCGSVF 191 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p~~C~~C~~~f 191 (213)
.++.||.|-.+--..-..|..|+...
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 36899999888777778999998754
No 83
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=44.57 E-value=10 Score=23.63 Aligned_cols=30 Identities=27% Similarity=0.667 Sum_probs=21.6
Q ss_pred ceeEcCCCCccccC----------------CCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~----------------~p~~C~~C~~~f~~~~ 195 (213)
.-|.|+.|...|-. -|-.|+.|+..|....
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~ 54 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD 54 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHH
T ss_pred cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHH
Confidence 45899999876642 2347999999987643
No 84
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=44.35 E-value=10 Score=24.37 Aligned_cols=29 Identities=31% Similarity=0.779 Sum_probs=21.4
Q ss_pred eeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
.|.|+.|...|-. .+-.|+.|+..|....
T Consensus 29 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 71 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS 71 (82)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred CeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence 4888888877752 3568999998887643
No 85
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=44.26 E-value=8.8 Score=26.11 Aligned_cols=25 Identities=28% Similarity=0.830 Sum_probs=18.4
Q ss_pred eeee-eccCcccceeEcCCCCccccCC
Q 028156 155 ASCF-CHKNTIDMGYICSVCLSIYCKH 180 (213)
Q Consensus 155 a~C~-CH~~~v~~GyvCp~Clsi~C~~ 180 (213)
..|+ |-+++.-+||.| +|.-.||..
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp CCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred CcChhhCCccCccCEEe-ecCCEeccc
Confidence 4565 444555669999 899999975
No 86
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=43.23 E-value=10 Score=25.19 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=6.7
Q ss_pred Cccccccccccc
Q 028156 182 KKCSTCGSVFGQ 193 (213)
Q Consensus 182 ~~C~~C~~~f~~ 193 (213)
-.|+.|+..|..
T Consensus 32 ~~C~~C~k~f~~ 43 (88)
T 1llm_C 32 FACDICGRKFAR 43 (88)
T ss_dssp EECTTTCCEESS
T ss_pred ccCCCCCCccCC
Confidence 356666655554
No 87
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=42.60 E-value=9.8 Score=26.63 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=19.4
Q ss_pred Cceeeeec-cCcccceeEcCCCCccccCC
Q 028156 153 FRASCFCH-KNTIDMGYICSVCLSIYCKH 180 (213)
Q Consensus 153 ~~a~C~CH-~~~v~~GyvCp~Clsi~C~~ 180 (213)
+...|+-. +++--+||.| +|.-.||..
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred cCccchhhcCcccccceEe-ccCCEeccc
Confidence 34556544 4555569999 899999974
No 88
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.43 E-value=9.4 Score=24.74 Aligned_cols=30 Identities=30% Similarity=0.652 Sum_probs=22.9
Q ss_pred ceeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
..|.|+.|...|-. -|-.|+.|+..|....
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 60 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHH
T ss_pred CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHH
Confidence 45899999887752 3457999999998754
No 89
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=42.30 E-value=11 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.786 Sum_probs=21.9
Q ss_pred eeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
.|.|+.|...|-. -|-.|+.|+..|....
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 76 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD 76 (90)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHH
Confidence 4899999877653 3457999999988654
No 90
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=42.00 E-value=38 Score=26.88 Aligned_cols=63 Identities=13% Similarity=-0.002 Sum_probs=35.6
Q ss_pred CCCCcEEEEEecCCCCCc---chh-hHHH-HHHHHHhCCeeeeEEEcCCc-ChHHHHHHHHhhCCeeec
Q 028156 56 LHPQPRILCLQGSPDGPE---QYV-AIMN-AIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHHK 118 (213)
Q Consensus 56 ~~~~~rILiis~S~d~~~---qyi-~imn-~if~aqk~~I~Idv~~L~~~-e~~iLqq~~~~TgG~Y~~ 118 (213)
.+++++||||.+|++... .+. .+.+ ....+++.+..|.++-|... ++.-+++.-..-.++-+.
T Consensus 9 ~~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 9 HHGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp ---CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred ccCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 368899999999997321 232 3344 34455666899999999532 444444444445555444
No 91
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.87 E-value=28 Score=22.42 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.2
Q ss_pred ceeEcCCCCccccCCCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p~~C~~C~~~f~~~~ 195 (213)
.++.|+.|.-+--..-..|..|++.-..+.
T Consensus 10 ~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~ 39 (53)
T 2d9g_A 10 GYWDCSVCTFRNSAEAFKCMMCDVRKGTST 39 (53)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCCCCCC
T ss_pred CCcCCCCCccCCCCCCCccCCCCCcCCccc
Confidence 479999999988777899999999876554
No 92
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.72 E-value=12 Score=24.19 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=22.8
Q ss_pred ceeEcCCCCcccc-----------------CCCCccccccccccccc
Q 028156 166 MGYICSVCLSIYC-----------------KHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C-----------------~~p~~C~~C~~~f~~~~ 195 (213)
.-|.|+.|.-.|- +.+-.|..|+..|....
T Consensus 6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~ 52 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPD 52 (78)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHH
T ss_pred cCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHH
Confidence 4589999987775 23568999999998644
No 93
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=41.50 E-value=6.1 Score=26.98 Aligned_cols=27 Identities=4% Similarity=-0.168 Sum_probs=18.8
Q ss_pred eEcCCCCccccCCC----Ccccccccccccc
Q 028156 168 YICSVCLSIYCKHL----KKCSTCGSVFGQA 194 (213)
Q Consensus 168 yvCp~Clsi~C~~p----~~C~~C~~~f~~~ 194 (213)
.+||+|.+-.-... -.|+.||..|...
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYRID 41 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccccCC
Confidence 58999998433222 2799999988764
No 94
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=41.43 E-value=17 Score=26.09 Aligned_cols=27 Identities=19% Similarity=0.618 Sum_probs=19.1
Q ss_pred CceeeeeccCcccc--eeEcCCCCccccCC
Q 028156 153 FRASCFCHKNTIDM--GYICSVCLSIYCKH 180 (213)
Q Consensus 153 ~~a~C~CH~~~v~~--GyvCp~Clsi~C~~ 180 (213)
+...|+-.++-+.+ ||.| +|.-.||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred cCccchhhCCeecccCCeEc-CCCCEeccc
Confidence 34567655554444 9999 599999975
No 95
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.14 E-value=12 Score=24.12 Aligned_cols=30 Identities=20% Similarity=0.606 Sum_probs=22.6
Q ss_pred ceeEcCCCCccccC----------------CCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~----------------~p~~C~~C~~~f~~~~ 195 (213)
.-|.|+.|...|-. .+-.|+.|+..|....
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~ 59 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHH
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHH
Confidence 35999999876652 2457999999998654
No 96
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=41.13 E-value=12 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=22.6
Q ss_pred eeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
.|.|+.|...|-. .+-.|+.|+..|....
T Consensus 36 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 78 (96)
T 2dmd_A 36 PYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS 78 (96)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHH
T ss_pred CEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence 5899999887752 3568999999998654
No 97
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=40.10 E-value=22 Score=24.01 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=24.8
Q ss_pred cceeEcCCCCccccCC---CCccccccccccccc
Q 028156 165 DMGYICSVCLSIYCKH---LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 165 ~~GyvCp~Clsi~C~~---p~~C~~C~~~f~~~~ 195 (213)
.+-|+|..|...+--- +..|+-||-+.....
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEEEEe
Confidence 3569999999988632 479999999887755
No 98
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=38.97 E-value=17 Score=25.89 Aligned_cols=30 Identities=27% Similarity=0.796 Sum_probs=23.5
Q ss_pred ceeEcCCCCcccc------------CCCCccccccccccccc
Q 028156 166 MGYICSVCLSIYC------------KHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C------------~~p~~C~~C~~~f~~~~ 195 (213)
..|.|+.|.-.|- +-|-.|+.|+..|....
T Consensus 73 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~ 114 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTD 114 (129)
T ss_dssp CSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHH
T ss_pred CCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHH
Confidence 4599999987765 45678999999998654
No 99
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=38.77 E-value=17 Score=25.21 Aligned_cols=31 Identities=32% Similarity=0.706 Sum_probs=24.0
Q ss_pred cceeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 165 DMGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 165 ~~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
...|.|+.|...|-. .|-.|+.|+..|....
T Consensus 64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 108 (124)
T 2dlq_A 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108 (124)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHH
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHH
Confidence 346999999987763 4568999999998654
No 100
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=38.48 E-value=7.2 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=19.3
Q ss_pred eEcCCCCccccCCC----Ccccccccccccc
Q 028156 168 YICSVCLSIYCKHL----KKCSTCGSVFGQA 194 (213)
Q Consensus 168 yvCp~Clsi~C~~p----~~C~~C~~~f~~~ 194 (213)
.+||+|.+-.-... -.|+.||..|...
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVR 39 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCC
Confidence 68999998543222 3799999998764
No 101
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=38.00 E-value=20 Score=24.24 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=25.3
Q ss_pred ceeEcCCCCccccCCCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p~~C~~C~~~f~~~~ 195 (213)
.++.||.|-.+---.-+.|-.|++...+..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 479999999888877899999999977653
No 102
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=37.86 E-value=21 Score=20.54 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=20.7
Q ss_pred ceeEcCCCCccccCCCCcccccccc
Q 028156 166 MGYICSVCLSIYCKHLKKCSTCGSV 190 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p~~C~~C~~~ 190 (213)
.++.|+.|-.+--..-..|..|+..
T Consensus 7 ~~W~C~~CT~~N~~~~~~Ce~C~~~ 31 (34)
T 3a9j_C 7 AQWNCTACTFLNHPALIRCEQCEMP 31 (34)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CcCCCCCCccccCCCCCeeCCCCCc
Confidence 4789999988877777899999875
No 103
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=37.84 E-value=13 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.3
Q ss_pred cceeEcCCCCccccCCCCccccccccc
Q 028156 165 DMGYICSVCLSIYCKHLKKCSTCGSVF 191 (213)
Q Consensus 165 ~~GyvCp~Clsi~C~~p~~C~~C~~~f 191 (213)
-.|.-|+.|...+--....|+.|+..-
T Consensus 45 L~~~rC~~CG~~~~PPr~~Cp~C~s~~ 71 (145)
T 3irb_A 45 IIGSKCSKCGRIFVPARSYCEHCFVKI 71 (145)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTEEC
T ss_pred EEEEEeCCCCcEEcCchhhCcCCCCCc
Confidence 458889999999998889999999753
No 104
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=37.42 E-value=15 Score=23.28 Aligned_cols=29 Identities=21% Similarity=0.607 Sum_probs=21.1
Q ss_pred eeEcC--CCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICS--VCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp--~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
-|.|+ .|...|-. -|-.|+.||..|....
T Consensus 19 ~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 63 (73)
T 1f2i_G 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63 (73)
T ss_dssp CEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred ccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHH
Confidence 48897 48877652 3567999999987643
No 105
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=37.17 E-value=17 Score=24.14 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=20.2
Q ss_pred eeEcCCCCccccC----------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~----------------~p~~C~~C~~~f~~~~ 195 (213)
-|.|+.|...|-. .+-.|+.|+..|....
T Consensus 35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~ 79 (95)
T 2yt9_A 35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79 (95)
T ss_dssp SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHH
T ss_pred CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHH
Confidence 4888888877762 3457888888877644
No 106
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=36.80 E-value=17 Score=24.81 Aligned_cols=29 Identities=31% Similarity=0.807 Sum_probs=21.2
Q ss_pred eeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
.|.|+.|...|-. .+-.|..|+..|....
T Consensus 45 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 87 (106)
T 2ee8_A 45 PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSR 87 (106)
T ss_dssp CCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHH
T ss_pred CcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHH
Confidence 4888888877652 3468999998887644
No 107
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=36.76 E-value=17 Score=36.97 Aligned_cols=39 Identities=21% Similarity=0.548 Sum_probs=26.5
Q ss_pred eeeeecc----CcccceeEcCCCCc-cc---------cCCC-Cccccccccccc
Q 028156 155 ASCFCHK----NTIDMGYICSVCLS-IY---------CKHL-KKCSTCGSVFGQ 193 (213)
Q Consensus 155 a~C~CH~----~~v~~GyvCp~Cls-i~---------C~~p-~~C~~C~~~f~~ 193 (213)
..|+|-+ .++.-.|+||.|.- -| +++| ..||.||+.+..
T Consensus 486 lVAy~LgITeVDPl~phy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~~ 539 (1041)
T 3f2b_A 486 FVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKK 539 (1041)
T ss_dssp HHHHHTTSCSCCCSCSEEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEE
T ss_pred HHHHHhcCCCcCCCcccccCccccccccccccccccccCCccccCccccccccc
Confidence 3477766 33445899999973 11 2345 799999998764
No 108
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.24 E-value=14 Score=25.76 Aligned_cols=27 Identities=26% Similarity=0.680 Sum_probs=19.9
Q ss_pred ceeeeec-cCcccceeEcCCCCccccCCC
Q 028156 154 RASCFCH-KNTIDMGYICSVCLSIYCKHL 181 (213)
Q Consensus 154 ~a~C~CH-~~~v~~GyvCp~Clsi~C~~p 181 (213)
...|+-. +++-.+||.|. |...||...
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSS
T ss_pred CCcChhhCCcccccCeecC-CCCEechhc
Confidence 3456644 45566799999 999999753
No 109
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=36.22 E-value=3e+02 Score=26.43 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHhCCeeeeEEEcCCcChHHHHHHHHhhCCeeeccCCc--chHHHHHHHHc
Q 028156 74 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQL--DGLFQYLLTIF 133 (213)
Q Consensus 74 qyi~imn~if~aqk~~I~Idv~~L~~~e~~iLqq~~~~TgG~Y~~~~~~--~~l~~~Ll~~~ 133 (213)
+|=.+-.....+.++||.+=...- .....+.+++++.-.|.+.-.... ..+.+++...+
T Consensus 288 DypSi~ql~~~l~~~~i~~ifavt-~~~~~~y~~l~~~i~~s~v~~l~~dSsni~~li~~~y 348 (690)
T 3fcs_B 288 DYPSLGLMTEKLSQKNINLIFAVT-ENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAY 348 (690)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEEE-GGGHHHHHHHHHHSTTCEEEEECTTCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCeEEEEEe-CCchhhHHHHHhhcCCceeeeeccccHHHHHHHHHHH
Confidence 343466777888899997644433 456678888887777666554433 34677666554
No 110
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=35.71 E-value=15 Score=24.41 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=15.6
Q ss_pred eEcCCCCccccCCCCcccccccc
Q 028156 168 YICSVCLSIYCKHLKKCSTCGSV 190 (213)
Q Consensus 168 yvCp~Clsi~C~~p~~C~~C~~~ 190 (213)
-+||.|.... .....|+.||..
T Consensus 31 ~~c~~cG~~~-~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 31 TECPQCHGKK-LSHHICPNCGYY 52 (60)
T ss_dssp EECTTTCCEE-CTTBCCTTTCBS
T ss_pred eECCCCCCEe-CCceEcCCCCcC
Confidence 3589998882 233789999854
No 111
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=35.16 E-value=9.4 Score=27.10 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=21.9
Q ss_pred ceeEcCCCCccccCCC----Cccccccccccccc
Q 028156 166 MGYICSVCLSIYCKHL----KKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p----~~C~~C~~~f~~~~ 195 (213)
.-|.||.|..-.=.-+ -.|+-|+..|.-..
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecCCE
Confidence 4699999998432222 36999999998765
No 112
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.81 E-value=17 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=20.9
Q ss_pred eeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
.|.|+.|...|-. .+-.|+.|+..|....
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 79 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRD 79 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHH
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHH
Confidence 4889888876653 2347999998887543
No 113
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=34.80 E-value=24 Score=23.61 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.2
Q ss_pred eEcCCCCccccCCCCccccccccccccc
Q 028156 168 YICSVCLSIYCKHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 168 yvCp~Clsi~C~~p~~C~~C~~~f~~~~ 195 (213)
-.|+.|.... +...||.||....++.
T Consensus 6 r~C~~Cg~YT--Lk~~CP~CG~~t~~ah 31 (60)
T 2aus_D 6 RKCPKCGRYT--LKETCPVCGEKTKVAH 31 (60)
T ss_dssp EECTTTCCEE--SSSBCTTTCSBCEESS
T ss_pred eECCCCCCEE--ccccCcCCCCccCCCC
Confidence 4699996544 3678999999988876
No 114
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=34.59 E-value=16 Score=26.25 Aligned_cols=15 Identities=0% Similarity=-0.164 Sum_probs=11.6
Q ss_pred CCccccccccccccc
Q 028156 181 LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 181 p~~C~~C~~~f~~~~ 195 (213)
...||.|+..|....
T Consensus 63 ~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 63 SPTDPFNRQTLTESM 77 (100)
T ss_dssp CSBCSSSCCBCCTTS
T ss_pred CCCCCCCCCCCChhh
Confidence 468999999887644
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=34.45 E-value=14 Score=30.18 Aligned_cols=13 Identities=23% Similarity=0.015 Sum_probs=10.1
Q ss_pred ccccccccccccc
Q 028156 183 KCSTCGSVFGQAQ 195 (213)
Q Consensus 183 ~C~~C~~~f~~~~ 195 (213)
.||+|+..|....
T Consensus 245 ~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 245 FNPVTRSPLTQEQ 257 (281)
T ss_dssp SCTTTCCCCCGGG
T ss_pred CCcCCCCCCchhc
Confidence 4999999887544
No 116
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.22 E-value=10 Score=26.69 Aligned_cols=9 Identities=22% Similarity=0.781 Sum_probs=5.4
Q ss_pred Ccccc--cccc
Q 028156 182 KKCST--CGSV 190 (213)
Q Consensus 182 ~~C~~--C~~~ 190 (213)
..||+ |...
T Consensus 49 ~~CP~tgc~~~ 59 (94)
T 2yu4_A 49 AYCPQIGCSHT 59 (94)
T ss_dssp BCCCSTTCCCC
T ss_pred CCCCcCcCccc
Confidence 36777 6644
No 117
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=33.97 E-value=17 Score=32.50 Aligned_cols=30 Identities=40% Similarity=0.858 Sum_probs=23.2
Q ss_pred cceeE--cCCCCcccc-----CCCCcccccccccccc
Q 028156 165 DMGYI--CSVCLSIYC-----KHLKKCSTCGSVFGQA 194 (213)
Q Consensus 165 ~~Gyv--Cp~Clsi~C-----~~p~~C~~C~~~f~~~ 194 (213)
.+||+ |+.|.+..- ..+..|+.||..+..+
T Consensus 240 ~~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~~~ 276 (392)
T 3axs_A 240 QFGYIQYCFNCMNREVVTDLYKFKEKCPHCGSKFHIG 276 (392)
T ss_dssp TEEEEEECTTTCCEEEECCGGGCCSBCTTTCSBCEEE
T ss_pred hcceEEECCCCCCeEeecCCCCCCCcCCCCCCcccee
Confidence 46777 999998754 3467899999988754
No 118
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.66 E-value=14 Score=26.25 Aligned_cols=22 Identities=18% Similarity=0.605 Sum_probs=10.9
Q ss_pred EcCCCCccccCCCCccccccccc
Q 028156 169 ICSVCLSIYCKHLKKCSTCGSVF 191 (213)
Q Consensus 169 vCp~Clsi~C~~p~~C~~C~~~f 191 (213)
-|+.|.+-|=... .||.||..+
T Consensus 20 ~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 20 HCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp ECTTTCCEEEEEE-ECSSSCSCC
T ss_pred ECccccccCCCcc-cCcchhhHH
Confidence 3666665444333 455555444
No 119
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.30 E-value=26 Score=22.64 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=9.8
Q ss_pred CCcccccccccccc
Q 028156 181 LKKCSTCGSVFGQA 194 (213)
Q Consensus 181 p~~C~~C~~~f~~~ 194 (213)
...||+|+..+...
T Consensus 57 ~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 57 FFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCSSSCCCCCCC
T ss_pred CCCCCCCCCcCCcc
Confidence 34788888877643
No 120
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.83 E-value=22 Score=20.62 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=8.0
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|.-.|-
T Consensus 12 ~~~C~~C~k~f~ 23 (48)
T 2epr_A 12 QVACEICGKIFR 23 (48)
T ss_dssp SEEETTTTEEES
T ss_pred CeeCCCCCcccC
Confidence 477777766554
No 121
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.95 E-value=17 Score=27.03 Aligned_cols=19 Identities=26% Similarity=0.786 Sum_probs=12.8
Q ss_pred eeeccCc-ccceeEcCCCCc
Q 028156 157 CFCHKNT-IDMGYICSVCLS 175 (213)
Q Consensus 157 C~CH~~~-v~~GyvCp~Cls 175 (213)
=+|.+.. +.+|++|..|-.
T Consensus 11 imC~KqpG~~iG~lCekcdG 30 (109)
T 2k0a_A 11 IMCLKQPGVQTGLLCEKCDG 30 (109)
T ss_dssp CBCCCCEEEEECEECGGGTT
T ss_pred hhccCCCcchhhhhhhhcCC
Confidence 3566655 678999877643
No 122
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=31.88 E-value=17 Score=20.62 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=6.1
Q ss_pred eEcCCCCcc
Q 028156 168 YICSVCLSI 176 (213)
Q Consensus 168 yvCp~Clsi 176 (213)
|.||+|.+.
T Consensus 4 ~~CpvCk~q 12 (28)
T 2jvx_A 4 FCCPKCQYQ 12 (28)
T ss_dssp EECTTSSCE
T ss_pred ccCcccccc
Confidence 677777753
No 123
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.33 E-value=28 Score=22.18 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=16.9
Q ss_pred eeEcCC--CCccccC--------------CCCccccccccc
Q 028156 167 GYICSV--CLSIYCK--------------HLKKCSTCGSVF 191 (213)
Q Consensus 167 GyvCp~--Clsi~C~--------------~p~~C~~C~~~f 191 (213)
-|.|+. |...|-. -|-.|..|+..|
T Consensus 38 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F 78 (79)
T 2dlk_A 38 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78 (79)
T ss_dssp CEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred CeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence 478877 8776652 345788887766
No 124
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=30.74 E-value=11 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.590 Sum_probs=18.9
Q ss_pred ceeEcCCCCccccC--C--CCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK--H--LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~--~--p~~C~~C~~~f~~~~ 195 (213)
.-+.|| |....=. - ...|+ ||.++...-
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 347899 9875332 1 26898 999987643
No 125
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.69 E-value=20 Score=17.61 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=9.2
Q ss_pred Cccccccccccccc
Q 028156 182 KKCSTCGSVFGQAQ 195 (213)
Q Consensus 182 ~~C~~C~~~f~~~~ 195 (213)
-.|+.|+..|....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 3 HKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCSSCCCCCCTTT
T ss_pred CcCCCCCcccCCHH
Confidence 35777777776543
No 126
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.45 E-value=18 Score=23.87 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=11.6
Q ss_pred CCccccccccccccc
Q 028156 181 LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 181 p~~C~~C~~~f~~~~ 195 (213)
...||+|+..+....
T Consensus 59 ~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 59 KGNCPVCRVPYPFGN 73 (85)
T ss_dssp CBCCTTTCCCCCTTC
T ss_pred CCCCCCCCCcCCHHh
Confidence 568999999887543
No 127
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=30.02 E-value=20 Score=25.76 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=12.1
Q ss_pred CCccccccccccccc
Q 028156 181 LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 181 p~~C~~C~~~f~~~~ 195 (213)
...||+|+..+....
T Consensus 58 ~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 58 GSYCPSCRYPCFPTD 72 (116)
T ss_dssp CSBCTTTCCBCCGGG
T ss_pred cCcCCCCCCCCCHhh
Confidence 568999999988655
No 128
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=30.00 E-value=29 Score=28.96 Aligned_cols=41 Identities=15% Similarity=0.322 Sum_probs=30.2
Q ss_pred eeeeeccCcccceeEcCCCCccccC--------C--CCccccccccccccc
Q 028156 155 ASCFCHKNTIDMGYICSVCLSIYCK--------H--LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 155 a~C~CH~~~v~~GyvCp~Clsi~C~--------~--p~~C~~C~~~f~~~~ 195 (213)
..|.=.+.++..|..|+.|...|-. - ...||.|+..+.-..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 4566666788899999998876542 1 359999999876543
No 129
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=29.94 E-value=69 Score=25.35 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=27.8
Q ss_pred CcEEEEEecCCCCCcchhhHHHHHHH-----HHhC--CeeeeEEEcC
Q 028156 59 QPRILCLQGSPDGPEQYVAIMNAIFS-----AQRS--MVPIDSCYLG 98 (213)
Q Consensus 59 ~~rILiis~S~d~~~qyi~imn~if~-----aqk~--~I~Idv~~L~ 98 (213)
-++||+|+||+...+.--.+.+.+.. +++. ++.+.++-|.
T Consensus 11 ~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~ 57 (191)
T 3k1y_A 11 MRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELS 57 (191)
T ss_dssp SEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred hceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHH
Confidence 47999999998655444455554433 3334 8999999994
No 130
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=29.80 E-value=71 Score=25.91 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=28.2
Q ss_pred cEEEEEecCCCCCcchhhHHH-HHHHHHhCCeeeeEEEcC
Q 028156 60 PRILCLQGSPDGPEQYVAIMN-AIFSAQRSMVPIDSCYLG 98 (213)
Q Consensus 60 ~rILiis~S~d~~~qyi~imn-~if~aqk~~I~Idv~~L~ 98 (213)
.+||||.+|++..+.-..+.+ .+..+++.+..|.++-|.
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 479999999965433334444 466667779999999994
No 131
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=29.51 E-value=81 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCcchhhHHH-HHHHHHhCCeeeeEEEcC
Q 028156 61 RILCLQGSPDGPEQYVAIMN-AIFSAQRSMVPIDSCYLG 98 (213)
Q Consensus 61 rILiis~S~d~~~qyi~imn-~if~aqk~~I~Idv~~L~ 98 (213)
+||||.++++..+--..+.+ .+..+++.+..|.++-|.
T Consensus 24 KiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy 62 (280)
T 4gi5_A 24 KVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLY 62 (280)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 79999999975433334444 578889999999999884
No 132
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.50 E-value=14 Score=25.20 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=18.9
Q ss_pred eEcCCCCccccCCC----Ccccccccccccc
Q 028156 168 YICSVCLSIYCKHL----KKCSTCGSVFGQA 194 (213)
Q Consensus 168 yvCp~Clsi~C~~p----~~C~~C~~~f~~~ 194 (213)
.+||+|.+-.-... -.|+.||..|...
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK 39 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 58999997543221 3799999988754
No 133
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.37 E-value=14 Score=25.11 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=18.9
Q ss_pred eEcCCCCccccCCC----Ccccccccccccc
Q 028156 168 YICSVCLSIYCKHL----KKCSTCGSVFGQA 194 (213)
Q Consensus 168 yvCp~Clsi~C~~p----~~C~~C~~~f~~~ 194 (213)
.+||+|.+-.-... -.|+.||..|...
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIK 39 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCC
Confidence 58999997543221 3799999988764
No 134
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.09 E-value=16 Score=25.01 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=18.9
Q ss_pred eEcCCCCccccCCC----Ccccccccccccc
Q 028156 168 YICSVCLSIYCKHL----KKCSTCGSVFGQA 194 (213)
Q Consensus 168 yvCp~Clsi~C~~p----~~C~~C~~~f~~~ 194 (213)
.+||+|.+-.---. -.|+.||..|...
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~ 39 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPIR 39 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEecCc
Confidence 58999987543211 3799999988754
No 135
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=29.00 E-value=74 Score=25.22 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=29.2
Q ss_pred CcEEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcC
Q 028156 59 QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 98 (213)
Q Consensus 59 ~~rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~ 98 (213)
..+|+||.||....+.--.+.+.+......++.++++.|.
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~ 41 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIG 41 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecc
Confidence 4589999999855444345667666666788999988873
No 136
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=28.76 E-value=22 Score=30.11 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=21.2
Q ss_pred CcccceeEcCCCCcccc--------CCCCcccccccc
Q 028156 162 NTIDMGYICSVCLSIYC--------KHLKKCSTCGSV 190 (213)
Q Consensus 162 ~~v~~GyvCp~Clsi~C--------~~p~~C~~C~~~ 190 (213)
++...-|.|+.|....= ..|..|+.|+..
T Consensus 129 ~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 129 RIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 34456799999996531 247899999986
No 137
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=28.71 E-value=17 Score=27.45 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=20.6
Q ss_pred eeEcCCCCcc----ccCCCCccccccccccccc
Q 028156 167 GYICSVCLSI----YCKHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi----~C~~p~~C~~C~~~f~~~~ 195 (213)
-|.||.|... ..----.|+-|+..|.-..
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 6999999862 1111246999999998765
No 138
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.29 E-value=21 Score=31.44 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=26.5
Q ss_pred eeeeccCccc--c-eeEcCCCCccccCC--CCccccccccccc
Q 028156 156 SCFCHKNTID--M-GYICSVCLSIYCKH--LKKCSTCGSVFGQ 193 (213)
Q Consensus 156 ~C~CH~~~v~--~-GyvCp~Clsi~C~~--p~~C~~C~~~f~~ 193 (213)
.|.=....+. . --.||.|.+.|..- ...|++|+..-+=
T Consensus 264 iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~IG 306 (320)
T 3mkr_B 264 ICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIG 306 (320)
T ss_dssp BBTTTCCBCCTTSCCEECTTTCCEECGGGTTSBCTTTSSBBSS
T ss_pred eecCCCccccCCCCCccCCCCCCeechhhCCCCCCCCcCcccC
Confidence 3554445443 2 34699999999965 5889999987653
No 139
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.21 E-value=28 Score=22.47 Aligned_cols=30 Identities=30% Similarity=0.662 Sum_probs=20.5
Q ss_pred ceeEcCCCCccccC------------------CCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK------------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~------------------~p~~C~~C~~~f~~~~ 195 (213)
.-|.|+.|...|-. .+-.|+.|+..|....
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~ 61 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHH
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHH
Confidence 35888888766541 2356888988887644
No 140
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.99 E-value=46 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=11.9
Q ss_pred CCccccccccccccc
Q 028156 181 LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 181 p~~C~~C~~~f~~~~ 195 (213)
...||+|+..+....
T Consensus 52 ~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 52 RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CSBCTTTCCBCSSCC
T ss_pred CCcCCCcCccccccc
Confidence 468999999887654
No 141
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.90 E-value=19 Score=17.61 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=9.3
Q ss_pred ccccccccccccc
Q 028156 183 KCSTCGSVFGQAQ 195 (213)
Q Consensus 183 ~C~~C~~~f~~~~ 195 (213)
.|..||..|....
T Consensus 3 ~C~~C~k~f~~~~ 15 (27)
T 1znf_A 3 KCGLCERSFVEKS 15 (27)
T ss_dssp BCSSSCCBCSSHH
T ss_pred cCCCCCCcCCCHH
Confidence 5778888887643
No 142
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.62 E-value=54 Score=25.31 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=28.2
Q ss_pred EEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcChHHHHHH---HHh
Q 028156 61 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQA---SYI 111 (213)
Q Consensus 61 rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e~~iLqq~---~~~ 111 (213)
-+++||.|..+. .+.+.+..|++.++++ +.+......-|.+. ||.
T Consensus 116 vvI~iS~SG~t~----~~i~~~~~ak~~g~~v--I~IT~~~~s~La~~~~~ad~ 163 (199)
T 1x92_A 116 VLLAISTSGNSA----NVIQAIQAAHDREMLV--VALTGRDGGGMASLLLPEDV 163 (199)
T ss_dssp EEEEECSSSCCH----HHHHHHHHHHHTTCEE--EEEECTTCHHHHHHCCTTCE
T ss_pred EEEEEeCCCCCH----HHHHHHHHHHHCCCEE--EEEECCCCCcHHhccccCCE
Confidence 455566665433 5668889999999987 44433344455555 653
No 143
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=27.56 E-value=16 Score=25.00 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=21.2
Q ss_pred EcCCCCccccC-----CCCccccccccccccc
Q 028156 169 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 169 vCp~Clsi~C~-----~p~~C~~C~~~f~~~~ 195 (213)
-||-|..+.-- .+..|..||+.|..+.
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEeecC
Confidence 49999876543 3579999999998776
No 144
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=27.34 E-value=28 Score=24.12 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=21.6
Q ss_pred ceeEcCCCCccccCCC----Cccccccccccccc
Q 028156 166 MGYICSVCLSIYCKHL----KKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p----~~C~~C~~~f~~~~ 195 (213)
.-|.||.|...-=+-. =.|.-|+.+|.-..
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGA 58 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGA 58 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCCSS
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEeCCc
Confidence 3599999987633222 27999999988655
No 145
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=27.02 E-value=33 Score=22.11 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=24.6
Q ss_pred cceeEcCCCCccccCCCCcccccccccccc
Q 028156 165 DMGYICSVCLSIYCKHLKKCSTCGSVFGQA 194 (213)
Q Consensus 165 ~~GyvCp~Clsi~C~~p~~C~~C~~~f~~~ 194 (213)
+-++.||.|-.+--..-+.|..|++.....
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 347899999888877778999999987654
No 146
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=26.89 E-value=42 Score=19.60 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=19.1
Q ss_pred ceeEcCCCCccccCCCCcccccccc
Q 028156 166 MGYICSVCLSIYCKHLKKCSTCGSV 190 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p~~C~~C~~~ 190 (213)
.-+.|++|.-+-=.--..|..|++.
T Consensus 6 g~W~C~~C~~~N~~~~~kC~aC~tp 30 (33)
T 3gj3_B 6 GTWDCDTCLVQNKPEAVKCVACETP 30 (33)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CceeCCcccCCCccccCEEcccCCC
Confidence 4588999987766666889998763
No 147
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.70 E-value=36 Score=19.27 Aligned_cols=12 Identities=25% Similarity=0.741 Sum_probs=6.5
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2eq0_A 12 PYKCHECGKVFR 23 (46)
T ss_dssp CEECTTTCCEES
T ss_pred CeECCCCCchhC
Confidence 466666655443
No 148
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=26.64 E-value=25 Score=27.17 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.2
Q ss_pred cceeEcCCCCccccCCCCcccccccc
Q 028156 165 DMGYICSVCLSIYCKHLKKCSTCGSV 190 (213)
Q Consensus 165 ~~GyvCp~Clsi~C~~p~~C~~C~~~ 190 (213)
-.|.-|+.|..++=-....|+.|+..
T Consensus 45 L~~~rC~~CG~~~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTEE
T ss_pred EEEEEECCCCcEEeCCCCCCCCCCCC
Confidence 35788999999997777899999876
No 149
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.60 E-value=38 Score=19.13 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=6.9
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytk_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CEeCCcCCCccC
Confidence 466666655443
No 150
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=26.56 E-value=38 Score=19.11 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=6.6
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2el4_A 12 PYGCSQCAKTFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred ceECCCCCchhC
Confidence 366666655443
No 151
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=26.11 E-value=17 Score=25.67 Aligned_cols=29 Identities=17% Similarity=0.612 Sum_probs=19.1
Q ss_pred eeEcCCCCccccC--------CC-Cccccccccccccc
Q 028156 167 GYICSVCLSIYCK--------HL-KKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------~p-~~C~~C~~~f~~~~ 195 (213)
...|..|+=.||. .. ..||+|+..+....
T Consensus 35 p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 35 ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 3444556666663 23 68999999986544
No 152
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=26.06 E-value=39 Score=19.12 Aligned_cols=12 Identities=25% Similarity=0.852 Sum_probs=6.6
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ema_A 12 RYKCNECGKVFS 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CcCCCCCcchhC
Confidence 366666655443
No 153
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=25.80 E-value=70 Score=20.64 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=21.8
Q ss_pred EEEecCCCCCcchhhHHHHHHHHHhCCee
Q 028156 63 LCLQGSPDGPEQYVAIMNAIFSAQRSMVP 91 (213)
Q Consensus 63 Liis~S~d~~~qyi~imn~if~aqk~~I~ 91 (213)
++|.+ |....|..++..+..+++.++.
T Consensus 48 V~I~a--D~~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 48 FLVGG--AKEVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp EEEEE--CTTSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEc--CCCCCHHHHHHHHHHHHHcCCC
Confidence 55554 6778899999999999999873
No 154
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.52 E-value=15 Score=18.08 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=10.2
Q ss_pred Cccccccccccccc
Q 028156 182 KKCSTCGSVFGQAQ 195 (213)
Q Consensus 182 ~~C~~C~~~f~~~~ 195 (213)
-.|..||..|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 3 YVCERCGKRFVQSS 16 (26)
Confidence 36788888887654
No 155
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.52 E-value=27 Score=17.41 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=9.8
Q ss_pred Cccccccccccccc
Q 028156 182 KKCSTCGSVFGQAQ 195 (213)
Q Consensus 182 ~~C~~C~~~f~~~~ 195 (213)
-.|+.||..|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (30)
T 1paa_A 3 YACGLCNRAFTRRD 16 (30)
T ss_dssp SBCTTTCCBCSSSH
T ss_pred cCCcccCcccCChH
Confidence 46778888887644
No 156
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=25.31 E-value=25 Score=31.08 Aligned_cols=26 Identities=12% Similarity=-0.297 Sum_probs=21.2
Q ss_pred eeEcCCCCccccCC--CCcccccccccc
Q 028156 167 GYICSVCLSIYCKH--LKKCSTCGSVFG 192 (213)
Q Consensus 167 GyvCp~Clsi~C~~--p~~C~~C~~~f~ 192 (213)
--.||.|.+.|..- ...|++|+..-+
T Consensus 287 ~v~Cp~cgA~y~~~~kG~lC~vC~l~~I 314 (325)
T 3mv2_A 287 SVSDPLTGSKYVITEKDKIDRIAMISKI 314 (325)
T ss_dssp EEECTTTCCEEEGGGTTSBCSSSSCBBT
T ss_pred CccCCCCCCeechhhCCCCCCCCcCccc
Confidence 44599999999965 589999998665
No 157
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=25.31 E-value=21 Score=19.94 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=6.1
Q ss_pred ccccccCCC
Q 028156 204 TNRKRKTTD 212 (213)
Q Consensus 204 ~~~~~~~~~ 212 (213)
+|||||++|
T Consensus 17 PKkKrk~~d 25 (26)
T 1q1s_A 17 PKKKRKVEX 25 (26)
T ss_pred CccccccCC
Confidence 567777665
No 158
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.79 E-value=27 Score=17.17 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=9.6
Q ss_pred Cccccccccccccc
Q 028156 182 KKCSTCGSVFGQAQ 195 (213)
Q Consensus 182 ~~C~~C~~~f~~~~ 195 (213)
-.|+.|+..|....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 3 FVCEVCTRAFARQE 16 (29)
T ss_dssp CBCTTTCCBCSSHH
T ss_pred eECCCCCcccCCHH
Confidence 35778888877643
No 159
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.69 E-value=25 Score=25.02 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=17.9
Q ss_pred eeeee--ccCcccceeEcCCCCccccC
Q 028156 155 ASCFC--HKNTIDMGYICSVCLSIYCK 179 (213)
Q Consensus 155 a~C~C--H~~~v~~GyvCp~Clsi~C~ 179 (213)
..|.- .++...++|.|..|.-.||.
T Consensus 26 ~~C~~~~Ck~~~~l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 26 YSCSFKGCTDVELVAVICPYCEKNFCL 52 (86)
T ss_dssp EECCSTTCCCEESSCEECTTTCCEECG
T ss_pred CCCCCcCCCCCCccceECCCCCccccc
Confidence 34543 33345589999999999995
No 160
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.63 E-value=22 Score=24.36 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=19.2
Q ss_pred eeEcCCCCcccc-------------CCCCccccccccccccc
Q 028156 167 GYICSVCLSIYC-------------KHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C-------------~~p~~C~~C~~~f~~~~ 195 (213)
-|.|+.|...|- +-|-.|..|+..|....
T Consensus 42 ~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~ 83 (107)
T 1wjp_A 42 AAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSF 83 (107)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHH
T ss_pred CccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCHH
Confidence 477777776664 23457888888877643
No 161
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.46 E-value=43 Score=18.88 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=6.6
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ep2_A 12 PYECSICGKSFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CcCCCCCCcccC
Confidence 466666655443
No 162
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.45 E-value=29 Score=17.10 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=9.5
Q ss_pred Cccccccccccccc
Q 028156 182 KKCSTCGSVFGQAQ 195 (213)
Q Consensus 182 ~~C~~C~~~f~~~~ 195 (213)
-.|+.||..|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (30)
T 1klr_A 3 YQCQYCEFRSADSS 16 (30)
T ss_dssp CCCSSSSCCCSCSH
T ss_pred ccCCCCCCccCCHH
Confidence 35778888776543
No 163
>2cq7_A Cysteine-rich secretory protein-2; crisp, crisp-2, TPX-1, CRD, cystein-rich domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=12 Score=24.09 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=11.0
Q ss_pred CCCceeeeeccCcc
Q 028156 151 VDFRASCFCHKNTI 164 (213)
Q Consensus 151 vd~~a~C~CH~~~v 164 (213)
..-+|.|+||+++-
T Consensus 34 ~~C~ATC~C~nkI~ 47 (49)
T 2cq7_A 34 EKCKATCLCESGPS 47 (49)
T ss_dssp STTHHHHSCSSSCS
T ss_pred cCCCCeeeeCCccc
Confidence 35689999998864
No 164
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.33 E-value=44 Score=18.86 Aligned_cols=12 Identities=33% Similarity=0.885 Sum_probs=6.9
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytj_A 12 PYICAECGKAFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCChhhC
Confidence 466666655444
No 165
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.26 E-value=31 Score=26.40 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=18.4
Q ss_pred cceeEcCCCCcccc--C-----------C----------CCcccccccccc
Q 028156 165 DMGYICSVCLSIYC--K-----------H----------LKKCSTCGSVFG 192 (213)
Q Consensus 165 ~~GyvCp~Clsi~C--~-----------~----------p~~C~~C~~~f~ 192 (213)
..-+.|..|...|- + . +..||.||..-.
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 34577888877654 2 3 567888887643
No 166
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.05 E-value=44 Score=18.84 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=6.8
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emh_A 12 PYICTVCGKAFT 23 (46)
T ss_dssp SEECTTTCCEES
T ss_pred CcCCCCCCchhC
Confidence 466666655443
No 167
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=23.81 E-value=15 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=24.1
Q ss_pred ccceeEcCCCCcc---ccCC-------CCccccccccccccc
Q 028156 164 IDMGYICSVCLSI---YCKH-------LKKCSTCGSVFGQAQ 195 (213)
Q Consensus 164 v~~GyvCp~Clsi---~C~~-------p~~C~~C~~~f~~~~ 195 (213)
.+.-|-||.|... .|++ ...|.+||..|....
T Consensus 20 L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i 61 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPI 61 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEEC
T ss_pred CCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEecc
Confidence 4566999999865 5554 268999999997654
No 168
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.74 E-value=30 Score=16.93 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=4.4
Q ss_pred eEcCCCCcc
Q 028156 168 YICSVCLSI 176 (213)
Q Consensus 168 yvCp~Clsi 176 (213)
|.|+.|...
T Consensus 4 ~~C~~C~k~ 12 (27)
T 2kvh_A 4 FSCSLCPQR 12 (27)
T ss_dssp EECSSSSCE
T ss_pred ccCCCcChh
Confidence 555555443
No 169
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.73 E-value=46 Score=18.72 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=6.7
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2epw_A 12 PCKCTECGKAFC 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeeCCCCCCccC
Confidence 366666655443
No 170
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.51 E-value=46 Score=18.75 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=6.6
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yu8_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCcCCchhC
Confidence 466666655443
No 171
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=23.49 E-value=49 Score=18.90 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=18.7
Q ss_pred ceeEcCCCCccccCCCCcccccccc
Q 028156 166 MGYICSVCLSIYCKHLKKCSTCGSV 190 (213)
Q Consensus 166 ~GyvCp~Clsi~C~~p~~C~~C~~~ 190 (213)
.-+.|+.|...-=.-...|-.|+..
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~p 28 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGAD 28 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCB
T ss_pred CCCCcCcCcCCcChhcceecCCCCc
Confidence 4588998877755566889888864
No 172
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.44 E-value=47 Score=18.73 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=6.4
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eml_A 12 PYECSVCGKAFS 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeeCCCcCCccC
Confidence 366666554443
No 173
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=23.34 E-value=33 Score=26.00 Aligned_cols=30 Identities=27% Similarity=0.707 Sum_probs=21.6
Q ss_pred ceeEcCCCCccccC--------------CCCccccccccccccc
Q 028156 166 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 166 ~GyvCp~Clsi~C~--------------~p~~C~~C~~~f~~~~ 195 (213)
..|.|+.|...|-. .|-.|+.|+..|....
T Consensus 132 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 175 (190)
T 2i13_A 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175 (190)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHH
Confidence 35888888877652 3557888888887654
No 174
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.20 E-value=44 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=17.3
Q ss_pred eeeee--ccCcccceeEcCCCCccccC
Q 028156 155 ASCFC--HKNTIDMGYICSVCLSIYCK 179 (213)
Q Consensus 155 a~C~C--H~~~v~~GyvCp~Clsi~C~ 179 (213)
..|.- .++...++|.|..|.-.||.
T Consensus 13 ~~Cs~~~Ck~~~ll~f~C~~C~~~FC~ 39 (63)
T 1x4v_A 13 NKCERAGCRQREMMKLTCERCSRNFCI 39 (63)
T ss_dssp CCCCSTTCCCCCSSCCBCSSSCCBCCH
T ss_pred CCCCccCCCCCCccceECCCCCcccCc
Confidence 34543 23335679999999999995
No 175
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.19 E-value=47 Score=18.66 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=6.4
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2en8_A 12 SHTCDECGKNFC 23 (46)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCcCcccC
Confidence 366666554443
No 176
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.94 E-value=49 Score=18.70 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=6.6
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em5_A 12 SHQCHECGRGFT 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCcCCCccC
Confidence 366666655443
No 177
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.81 E-value=49 Score=18.61 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=6.5
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emy_A 12 PYECHECGKAFS 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CcCCCCCCcccC
Confidence 366666655443
No 178
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.58 E-value=51 Score=18.63 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=5.9
Q ss_pred eeEcCCCCccc
Q 028156 167 GYICSVCLSIY 177 (213)
Q Consensus 167 GyvCp~Clsi~ 177 (213)
.|.|+.|...|
T Consensus 12 ~~~C~~C~k~F 22 (46)
T 2emf_A 12 HFECTECGKAF 22 (46)
T ss_dssp CEECSSSCCEE
T ss_pred CeECCCCCchh
Confidence 36666555444
No 179
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.49 E-value=38 Score=19.15 Aligned_cols=11 Identities=64% Similarity=1.383 Sum_probs=4.9
Q ss_pred ccccccccccc
Q 028156 183 KCSTCGSVFGQ 193 (213)
Q Consensus 183 ~C~~C~~~f~~ 193 (213)
.|+.|+..|..
T Consensus 14 ~C~~C~k~F~~ 24 (46)
T 2ytn_A 14 KCNECGKVFTQ 24 (46)
T ss_dssp BCTTTCCBCSS
T ss_pred ECCCCCCeeCC
Confidence 34444444443
No 180
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.45 E-value=38 Score=19.09 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=5.6
Q ss_pred eeEcCCCCccc
Q 028156 167 GYICSVCLSIY 177 (213)
Q Consensus 167 GyvCp~Clsi~ 177 (213)
.|.|+.|...|
T Consensus 12 ~~~C~~C~k~F 22 (46)
T 2eoe_A 12 PYKCNECGKVF 22 (46)
T ss_dssp SSEETTTTEEC
T ss_pred CeECCCcChhh
Confidence 35555555444
No 181
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.39 E-value=35 Score=21.23 Aligned_cols=29 Identities=21% Similarity=0.555 Sum_probs=20.8
Q ss_pred eeEcCCCCccc-----------c-CCCCccc-cccccccccc
Q 028156 167 GYICSVCLSIY-----------C-KHLKKCS-TCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~-----------C-~~p~~C~-~C~~~f~~~~ 195 (213)
-|.|+.|...| + +.|-.|+ .||..|....
T Consensus 10 ~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~ 51 (66)
T 2eod_A 10 TQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVARE 51 (66)
T ss_dssp EEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEETT
T ss_pred CeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccccHH
Confidence 58888887554 2 3456799 9999887654
No 182
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.36 E-value=51 Score=18.50 Aligned_cols=12 Identities=25% Similarity=0.825 Sum_probs=6.7
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eme_A 12 PYVCDYCGKAFG 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCChhhC
Confidence 466666655443
No 183
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.34 E-value=51 Score=18.61 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=6.8
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2eoo_A 12 PYGCNECGKNFG 23 (46)
T ss_dssp CEECSSSCCEES
T ss_pred CEEccccCcccC
Confidence 466666655443
No 184
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.31 E-value=23 Score=25.56 Aligned_cols=10 Identities=40% Similarity=1.066 Sum_probs=5.6
Q ss_pred cccccccccc
Q 028156 183 KCSTCGSVFG 192 (213)
Q Consensus 183 ~C~~C~~~f~ 192 (213)
.||+||..+.
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 3666665554
No 185
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.29 E-value=58 Score=24.78 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCcchhhHHHHHHHHHhCCeeeeEEEcCCcChHHHHHHHHh
Q 028156 61 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYI 111 (213)
Q Consensus 61 rILiis~S~d~~~qyi~imn~if~aqk~~I~Idv~~L~~~e~~iLqq~~~~ 111 (213)
-+++||.|+.+ -.+.+.+..|++.++++ +.+......-|.+.+|.
T Consensus 82 ~vI~iS~sG~t----~~~~~~~~~ak~~g~~v--i~IT~~~~s~l~~~ad~ 126 (186)
T 1m3s_A 82 LVIIGSGSGET----KSLIHTAAKAKSLHGIV--AALTINPESSIGKQADL 126 (186)
T ss_dssp EEEEECSSSCC----HHHHHHHHHHHHTTCEE--EEEESCTTSHHHHHCSE
T ss_pred EEEEEcCCCCc----HHHHHHHHHHHHCCCEE--EEEECCCCCchHHhCCE
Confidence 34555555533 35667888999999886 44433333345666663
No 186
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=22.28 E-value=50 Score=18.54 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=6.3
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em9_A 12 PYNCKECGKSFR 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCccccccC
Confidence 366665554443
No 187
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.17 E-value=24 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=20.7
Q ss_pred EcCCCCccccC-----CCCccccccccccccc
Q 028156 169 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 169 vCp~Clsi~C~-----~p~~C~~C~~~f~~~~ 195 (213)
-||-|..+.-- ....|..||+.|..+.
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEecCC
Confidence 48999875543 3478999999998766
No 188
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=22.10 E-value=60 Score=19.09 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=18.6
Q ss_pred cceeEcCCCCccccCCCCcccccccc
Q 028156 165 DMGYICSVCLSIYCKHLKKCSTCGSV 190 (213)
Q Consensus 165 ~~GyvCp~Clsi~C~~p~~C~~C~~~ 190 (213)
...|.|++|+-.-=.-...|..|++.
T Consensus 5 ~G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CCceECCeeEeECccccCEEcccCCc
Confidence 34689999986655556789888763
No 189
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.07 E-value=51 Score=18.55 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=5.7
Q ss_pred eeEcCCCCccc
Q 028156 167 GYICSVCLSIY 177 (213)
Q Consensus 167 GyvCp~Clsi~ 177 (213)
-|.|+.|...|
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2ene_A 12 PYKCNECGKVF 22 (46)
T ss_dssp SEECSSSCCEE
T ss_pred CeECCCCCchh
Confidence 35665555444
No 190
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=22.00 E-value=53 Score=18.53 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=6.7
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2el6_A 12 PYKCSQCEKSFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred CeECCCCCcccC
Confidence 366666655443
No 191
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.85 E-value=52 Score=18.49 Aligned_cols=12 Identities=25% Similarity=0.855 Sum_probs=6.7
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2emp_A 12 PYMCNECGKAFS 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 366666655443
No 192
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=21.71 E-value=33 Score=20.75 Aligned_cols=24 Identities=13% Similarity=0.426 Sum_probs=14.4
Q ss_pred EcCCCCccccCCCCcccccccccc
Q 028156 169 ICSVCLSIYCKHLKKCSTCGSVFG 192 (213)
Q Consensus 169 vCp~Clsi~C~~p~~C~~C~~~f~ 192 (213)
.|..|+...-+....||+|+..+.
T Consensus 31 f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 31 FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 344454444445677888887654
No 193
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.69 E-value=34 Score=16.69 Aligned_cols=10 Identities=40% Similarity=1.125 Sum_probs=4.6
Q ss_pred cccccccccc
Q 028156 184 CSTCGSVFGQ 193 (213)
Q Consensus 184 C~~C~~~f~~ 193 (213)
|+.|+..|..
T Consensus 5 C~~C~k~f~~ 14 (29)
T 2m0f_A 5 CRECGKQFTT 14 (29)
T ss_dssp CTTTSCEESC
T ss_pred CCCCCCccCC
Confidence 4445544443
No 194
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.60 E-value=35 Score=16.74 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=5.0
Q ss_pred cccccccccc
Q 028156 184 CSTCGSVFGQ 193 (213)
Q Consensus 184 C~~C~~~f~~ 193 (213)
|+.||..|..
T Consensus 5 C~~C~k~f~~ 14 (29)
T 1rik_A 5 CPECPKRFMR 14 (29)
T ss_dssp CSSSSCEESC
T ss_pred CCCCCchhCC
Confidence 4445555544
No 195
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.47 E-value=53 Score=18.49 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=5.4
Q ss_pred eeEcCCCCccc
Q 028156 167 GYICSVCLSIY 177 (213)
Q Consensus 167 GyvCp~Clsi~ 177 (213)
.|.|+.|...|
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2ytg_A 12 PFKCGECGKSY 22 (46)
T ss_dssp SEECTTTCCEE
T ss_pred CeECCCCCccc
Confidence 35555554443
No 196
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.42 E-value=54 Score=18.38 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=6.6
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2emm_A 12 PHKCNECGKSFI 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeeCCCCChhhC
Confidence 466666655443
No 197
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.32 E-value=48 Score=18.66 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=6.6
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ysp_A 12 PYKCEKCGKGYN 23 (46)
T ss_dssp SEEETTTTEEES
T ss_pred CeECCCCCCccC
Confidence 466666655443
No 198
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.27 E-value=54 Score=18.43 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=6.3
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em7_A 12 PYKCEECGKGFI 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCccchhC
Confidence 366665554443
No 199
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.04 E-value=57 Score=18.34 Aligned_cols=12 Identities=17% Similarity=0.514 Sum_probs=6.7
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2enc_A 12 PFKCEECGKGFY 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CcCCCCCCCcCC
Confidence 366666655443
No 200
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.92 E-value=56 Score=18.35 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=6.5
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ep0_A 12 PYKCDVCHKSFR 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeeCcccCcccC
Confidence 366666655443
No 201
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.90 E-value=35 Score=24.46 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=21.3
Q ss_pred EcCCCCccccC-----CCCccccccccccccc
Q 028156 169 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 169 vCp~Clsi~C~-----~p~~C~~C~~~f~~~~ 195 (213)
-||-|..+.-- ....|..||+.|..+.
T Consensus 38 kCp~C~~~~~VFShA~t~V~C~~CgtvL~~PT 69 (86)
T 3iz6_X 38 KCQGCFNITTVFSHSQTVVVCPGCQTVLCQPT 69 (86)
T ss_dssp ECTTTCCEEEEETTCSSCCCCSSSCCCCSCCC
T ss_pred ECCCCCCeeEEEecCCcEEEccCCCCEeecCC
Confidence 59999876543 3579999999999876
No 202
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.88 E-value=57 Score=18.32 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=6.7
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytd_A 12 PYKCSECGKAFH 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCCeeC
Confidence 466666655443
No 203
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.74 E-value=36 Score=16.68 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=4.4
Q ss_pred eEcCCCCcc
Q 028156 168 YICSVCLSI 176 (213)
Q Consensus 168 yvCp~Clsi 176 (213)
|.|+.|...
T Consensus 4 ~~C~~C~~~ 12 (30)
T 2m0d_A 4 YQCDYCGRS 12 (30)
T ss_dssp EECTTTCCE
T ss_pred ccCCCCCcc
Confidence 555554433
No 204
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.74 E-value=49 Score=21.39 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=21.3
Q ss_pred CcccceeEcCCCCccc--cCC--CCcccccccccc
Q 028156 162 NTIDMGYICSVCLSIY--CKH--LKKCSTCGSVFG 192 (213)
Q Consensus 162 ~~v~~GyvCp~Clsi~--C~~--p~~C~~C~~~f~ 192 (213)
++...-..||.|.+.. -.. .-.|..|+.+..
T Consensus 13 ki~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 13 KLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEF 47 (55)
T ss_dssp CCCCSSCCCTTTTTTCCCEECSSEEECTTTCCCEE
T ss_pred EEEEccccCcCCCCceeEeccCCEEECCCCCCEEE
Confidence 4455578999999833 121 358999999864
No 205
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.66 E-value=37 Score=18.03 Aligned_cols=14 Identities=21% Similarity=0.672 Sum_probs=8.1
Q ss_pred CCcccccccccccc
Q 028156 181 LKKCSTCGSVFGQA 194 (213)
Q Consensus 181 p~~C~~C~~~f~~~ 194 (213)
|-.|+.|+..|...
T Consensus 11 ~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 11 PFQCPDCDRSFSRS 24 (37)
T ss_dssp SBCCTTTCCCBSSH
T ss_pred CccCCCCCcccCcH
Confidence 34566666666543
No 206
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.63 E-value=38 Score=16.58 Aligned_cols=8 Identities=63% Similarity=1.261 Sum_probs=3.8
Q ss_pred eEcCCCCc
Q 028156 168 YICSVCLS 175 (213)
Q Consensus 168 yvCp~Cls 175 (213)
|.|+.|..
T Consensus 4 ~~C~~C~k 11 (28)
T 2kvf_A 4 YSCSVCGK 11 (28)
T ss_dssp EECSSSCC
T ss_pred ccCCCCCc
Confidence 55554443
No 207
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.61 E-value=57 Score=18.39 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=6.8
Q ss_pred eeEcCCCCcccc
Q 028156 167 GYICSVCLSIYC 178 (213)
Q Consensus 167 GyvCp~Clsi~C 178 (213)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em8_A 12 PYKCVECGKGYK 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECcccCchhC
Confidence 466666655443
No 208
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.21 E-value=46 Score=18.70 Aligned_cols=11 Identities=36% Similarity=1.042 Sum_probs=5.0
Q ss_pred ccccccccccc
Q 028156 183 KCSTCGSVFGQ 193 (213)
Q Consensus 183 ~C~~C~~~f~~ 193 (213)
.|..|+..|..
T Consensus 14 ~C~~C~k~f~~ 24 (46)
T 2eop_A 14 ECRECGKSFSF 24 (46)
T ss_dssp BCTTTCCBCSS
T ss_pred eCCCCCchhCC
Confidence 34444444443
No 209
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.20 E-value=54 Score=20.33 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=15.6
Q ss_pred cCCCCccccCCCCccccccccccccc
Q 028156 170 CSVCLSIYCKHLKKCSTCGSVFGQAQ 195 (213)
Q Consensus 170 Cp~Clsi~C~~p~~C~~C~~~f~~~~ 195 (213)
|..|+.. ....||+|+..+...+
T Consensus 29 C~~Ci~~---~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 29 CSGCLEA---SGMQCPICQAPWPLGA 51 (56)
T ss_dssp BTTTCSS---SSSSCSSCCSSSSCCS
T ss_pred cHHHHcc---CCCCCCcCCcEeecCC
Confidence 5555443 4568999998887654
No 210
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.19 E-value=33 Score=18.12 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=9.6
Q ss_pred Cccccccccccccc
Q 028156 182 KKCSTCGSVFGQAQ 195 (213)
Q Consensus 182 ~~C~~C~~~f~~~~ 195 (213)
-.|+.||..|....
T Consensus 3 ~~C~~C~k~F~~~~ 16 (33)
T 1rim_A 3 FACPECPKRFMRSD 16 (33)
T ss_dssp CCCSSSCCCCSSHH
T ss_pred ccCCCCCchhCCHH
Confidence 36778888877643
No 211
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.06 E-value=34 Score=23.37 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=17.8
Q ss_pred eeeeec-cCcccc---eeEcCCCCccccCCC
Q 028156 155 ASCFCH-KNTIDM---GYICSVCLSIYCKHL 181 (213)
Q Consensus 155 a~C~CH-~~~v~~---GyvCp~Clsi~C~~p 181 (213)
..|+-. +++.-. ||.| +|.-.||...
T Consensus 16 ~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred CcchhhCCeecccccCceEe-cCCCEehhcc
Confidence 455544 444444 4999 9999999753
No 212
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=20.01 E-value=45 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.657 Sum_probs=21.6
Q ss_pred eeEcCCCCccccC--------------CCCcc--ccccccccccc
Q 028156 167 GYICSVCLSIYCK--------------HLKKC--STCGSVFGQAQ 195 (213)
Q Consensus 167 GyvCp~Clsi~C~--------------~p~~C--~~C~~~f~~~~ 195 (213)
.|.|+.|...|-. .|-.| +.|+..|....
T Consensus 66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~ 110 (119)
T 2jp9_A 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSD 110 (119)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHH
T ss_pred CccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHH
Confidence 4899999887763 34578 88999887643
Done!