BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028157
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 191 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 246
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 247 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILP 305
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 306 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 189 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 244
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 245 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILP 303
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 304 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 188 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 243
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 244 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEV-TQQSFRITILP 302
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 303 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 359
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 180 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 235
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 236 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 294
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 295 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 351
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 197 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 252
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 253 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 311
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 312 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 191 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 246
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 247 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 305
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 306 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 192 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 247
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 248 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 192 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 247
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 248 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 192 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 247
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 248 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 194 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 249
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 250 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 308
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 193 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 248
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 249 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 307
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 308 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 364
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 194 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 249
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 250 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 308
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 192 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 247
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 248 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 192 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 247
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 248 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 306
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 194 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 249
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 250 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 308
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 189 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 244
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 245 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 303
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 304 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 197 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 252
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 253 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 311
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 312 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 195 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 250
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 251 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 309
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 310 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 366
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 208 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 263
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 264 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSCGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 208 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 263
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 264 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 206 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 261
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 262 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 320
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 321 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 377
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 214 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 269
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 270 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 328
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 329 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 385
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 208 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 263
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 264 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 207 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 262
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 263 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 321
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 209 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 264
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 265 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 323
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 324 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 205 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 260
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 261 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 319
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 320 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 376
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 204 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 259
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 260 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 208 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 263
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 264 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 208 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 263
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 264 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 228 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 283
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 284 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 342
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 343 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 208 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 263
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 264 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 207 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 262
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 263 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 321
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 209 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 264
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 265 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 323
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 324 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 204 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 259
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 260 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 207 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 262
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 263 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 321
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 204 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 259
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 260 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 211 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 266
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 267 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 325
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 326 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 382
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 204 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 259
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 260 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 228 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 283
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 284 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 342
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 343 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 208 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFEA 263
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 264 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 251 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 306
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 307 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 365
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 366 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 250 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 305
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 306 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 364
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 365 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 421
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 251 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 306
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 307 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 365
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 366 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 16/178 (8%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
I YTPI ++ YY I + + +GG+ L + +DSG + RLP V+ A
Sbjct: 186 IWYTPI----KEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDA 241
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGT--- 161
+ + C+ S PKI+I +L + R T
Sbjct: 242 VVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISI-YLRDENSSRSFRITILP 300
Query: 162 ------LVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNCS 213
++ A ++ C F I P N++ +G G V +D +R+GF C+
Sbjct: 301 QLYIQPMMGAGLNYECYRFGI-SPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 208 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 263
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A++S C+ + P I+++ +G V + R T++
Sbjct: 264 AVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 322
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI + +G V G V +D +R+GF C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFAISQSSTGT-CMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 17/178 (9%)
Query: 46 IKYTPIVTTAEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNIITRLPSPVY-A 104
+ YTPI + YY++I+ + + G+ L + + +DSG RLP V+ A
Sbjct: 204 LWYTPI----RREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEA 259
Query: 105 ALRSXXXXXXXXXXXXXXXXDLLGTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV- 163
A+ S C+ + P I+++ +G V + R T++
Sbjct: 260 AVASIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQ-SFRITILP 318
Query: 164 ---------VASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGPGNC 212
VA+ C +FAI ++ +G V G V +D +R+GF C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFAISQSSTGTV-MGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 87/240 (36%), Gaps = 46/240 (19%)
Query: 2 GLDRSSVSIISKTNTSY-----FSYCLPSPYGSTAYITFGKPVSVSN--KFIKYTPIVTT 54
GL S +++ ++ ++ F CLP+ G I G PV + + YTP+VT
Sbjct: 142 GLANSGLALPAQVASAQKVANRFLLCLPT-GGPGVAIFGGGPVPWPQFTQSMPYTPLVTK 200
Query: 55 AEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNII--TRLP---------SPVY 103
+Y I I VG ++P + +G ++ TRLP P+
Sbjct: 201 GGSPAHY-ISARSIVVGDTRVPVP-------EGALATGGVMLSTRLPYVLLRPDVYRPLM 252
Query: 104 AALRSXXXXXXXXXXXXXXXXDLL---GTCYD-------LSAYETVVVPKIAIHFLGGVD 153
A + + G CYD L Y VP + + GG D
Sbjct: 253 DAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGY---AVPNVQLGLDGGSD 309
Query: 154 LELDVRGTLVVASVSQVCLEF------AIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGF 207
+ + ++V C+ F A ++ LG Q + +D+ +RLGF
Sbjct: 310 WTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 86/243 (35%), Gaps = 52/243 (21%)
Query: 2 GLDRSSVSIISKTNTSY-----FSYCLPSPYGSTAYITFGKPVSVSN--KFIKYTPIVTT 54
GL S +++ ++ ++ F CLP+ G I G PV + + YTP+VT
Sbjct: 142 GLANSGLALPAQVASAQKVANRFLLCLPT-GGPGVAIFGGGPVPWPQFTQSMPYTPLVTK 200
Query: 55 AEQSEYYDIILTGISVGGEKLPFKISYFTKLSTEIDSGNII--TRLPSPVYAALR----- 107
+Y I I VG ++P + +G ++ TRLP Y LR
Sbjct: 201 GGSPAHY-ISARSIVVGDTRVPVP-------EGALATGGVMLSTRLP---YVLLRPDVYR 249
Query: 108 ----------SXXXXXXXXXXXXXXXXDLLGTCYD-------LSAYETVVVPKIAIHFLG 150
+ G CYD L Y VP + + G
Sbjct: 250 PLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGY---AVPNVQLGLDG 306
Query: 151 GVDLELDVRGTLVVASVSQVCLEF------AIYPPDLNSITLGNVQQRGHEVHYDVGGRR 204
G D + + ++V C+ F A ++ LG Q + +D+ +R
Sbjct: 307 GSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKR 366
Query: 205 LGF 207
LGF
Sbjct: 367 LGF 369
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 162 LVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGP 209
L V ++ C+ F I P N +GN+ R YD G R+GF P
Sbjct: 307 LPVDQSNETCM-FIILPDGGNQYIVGNLFLRFFVNVYDFGNNRIGFAP 353
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 162 LVVASVSQVCLEFAIYPPDLNSITLGNVQQRGHEVHYDVGGRRLGFGP 209
L V + C+ F + P N +GN+ R YD G R+GF P
Sbjct: 307 LPVDKSGETCM-FIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,808,239
Number of Sequences: 62578
Number of extensions: 210383
Number of successful extensions: 471
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 55
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)