BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028159
MNSVTSASPPTTTLCSSIQSKTQASFFGNSLSSVPVIPRTLTCSSNLKLNGLGFFGGAKS
PRRIPLQCNSTTKPGPPSGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRL
QAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTN
NVTPASPSEPITPDAETDPNPGDQGSRFRGVR

High Scoring Gene Products

Symbol, full name Information P value
AT4G13200 protein from Arabidopsis thaliana 2.5e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028159
        (212 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2119355 - symbol:AT4G13200 "AT4G13200" species...   146  2.5e-10   1


>TAIR|locus:2119355 [details] [associations]
            symbol:AT4G13200 "AT4G13200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
            "thylakoid" evidence=IDA] EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009535 GO:GO:0010287 EMBL:AL049751 EMBL:AL161535
            EMBL:AY117202 EMBL:AY063801 EMBL:AY085778 IPI:IPI00529354
            PIR:T07700 RefSeq:NP_193056.1 UniGene:At.27194 STRING:Q8LDV3
            PaxDb:Q8LDV3 PRIDE:Q8LDV3 EnsemblPlants:AT4G13200.1 GeneID:826935
            KEGG:ath:AT4G13200 TAIR:At4g13200 eggNOG:NOG09618
            HOGENOM:HOG000210051 InParanoid:Q8LDV3 OMA:RNSRSNF
            ProtClustDB:CLSN2916044 Genevestigator:Q8LDV3 Uniprot:Q8LDV3
        Length = 185

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 48/145 (33%), Positives = 64/145 (44%)

Query:    16 SSIQSKTQASF-FGNSLSSVPVIPRTLTC-SSXXXXXXXXXXXXAKSPRR-IPLQCNSTT 72
             SS    + +SF   NS +     P + T  +S             +S RR   L+ N +T
Sbjct:     2 SSFTIPSPSSFSLSNSYNQTS--PHSFTLRNSRSNFEFHRLRLDVESRRRSTSLRSNCST 59

Query:    73 KXXXXXXXXXXXXRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLXXXXXXXXXXXX 132
             K            ++VLDAFFLGKA+AE +NERIES VGE LST+G+             
Sbjct:    60 KGTDSGENEN---KSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQ 116

Query:   133 XDVLXXXXXXXXXXXXXXMEVRGLV 157
              +VL              ME +GLV
Sbjct:   117 EEVLERAKKAKERAARETMEEQGLV 141


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.127   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      212       138   0.00091  102 3  11 23  0.47    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  505 (54 KB)
  Total size of DFA:  104 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.61u 0.16s 10.77t   Elapsed:  00:00:00
  Total cpu time:  10.61u 0.16s 10.77t   Elapsed:  00:00:00
  Start:  Fri May 10 05:18:51 2013   End:  Fri May 10 05:18:51 2013

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