BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028159
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LDV3|Y4320_ARATH Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis
thaliana GN=At4g13200 PE=1 SV=2
Length = 185
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 83/109 (76%), Gaps = 3/109 (2%)
Query: 78 SGSGDGESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137
+ SG+ E+++VLDAFFLGKA+AE +NERIES VGE LST+G+ QAEQQKQVQE QE+VLE
Sbjct: 62 TDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQKQVQEIQEEVLE 121
Query: 138 RAKKAKEKAAREAMEVRGLV---PKSRTVNATPVSAATSASPSTTNNVT 183
RAKKAKE+AARE ME +GLV P + T N V A+ S ST + T
Sbjct: 122 RAKKAKERAARETMEEQGLVASKPVAITRNPDAVVVASVTSTSTVESKT 170
>sp|P73628|Y1769_SYNY3 Probable thylakoid lumen protein sll1769 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=sll1769 PE=4 SV=1
Length = 105
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 88 VLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERA 139
VL AFFLG+A AE L+E++E V LS +G+ AEQ++ +++F +V RA
Sbjct: 5 VLQAFFLGRAFAEVLSEKVEDGVTNALSELGKFDAEQRENLRQFIAEVQSRA 56
>sp|Q8W4S4|VHAA3_ARATH Vacuolar proton ATPase a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1
SV=1
Length = 821
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 111 GEFLSTVGRLQAEQQKQVQEFQ--EDVLERAKKAKEKAAREAMEVR-----GLVPKSRTV 163
GEF S+ R A+QQ++ + Q ED+LE +EK+ +V+ GLVP+ +++
Sbjct: 145 GEFFSSAHRSAADQQRETESQQAGEDLLESPLLQEEKSIDSTKQVKLGFLTGLVPREKSM 204
>sp|Q7YRB7|AOFB_CANFA Amine oxidase [flavin-containing] B OS=Canis familiaris GN=MAOB
PE=2 SV=3
Length = 520
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 136 LERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVTPASPSEP 190
+E A +A E+AARE + G +P+ + P S A P TT + PS P
Sbjct: 436 MEGAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVP 490
>sp|Q6PLK3|AOFB_PIG Amine oxidase [flavin-containing] B OS=Sus scrofa GN=MAOB PE=2 SV=3
Length = 520
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 136 LERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVTPASPSEP 190
+E A +A E+AARE + G +P+ + P S A P TT + PS P
Sbjct: 436 MEGAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAKPITTTFLERHLPSVP 490
>sp|Q5RE98|AOFB_PONAB Amine oxidase [flavin-containing] B OS=Pongo abelii GN=MAOB PE=2
SV=3
Length = 520
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 136 LERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVTPASPSEP 190
+E A +A E+AARE + G +P+ + P S A P TT + PS P
Sbjct: 436 MEGAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVP 490
>sp|P27338|AOFB_HUMAN Amine oxidase [flavin-containing] B OS=Homo sapiens GN=MAOB PE=1
SV=3
Length = 520
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 136 LERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVTPASPSEP 190
+E A +A E+AARE + G +P+ + P S A P TT + PS P
Sbjct: 436 MEGAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVP 490
>sp|B3Q6L0|ENO_RHOPT Enolase OS=Rhodopseudomonas palustris (strain TIE-1) GN=eno PE=3
SV=1
Length = 427
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 64 IPLQCNSTTKPGPPSGSGDG-----ESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVG 118
+ L+ S + PSG+ G E R A +LGK V +A +E+ GE +G
Sbjct: 25 VVLEDGSVGRAAVPSGASTGAHEAVELRDGDKARYLGKGVQKA----VEAVNGELFDALG 80
Query: 119 RLQAEQQKQVQE 130
+ AEQQ Q+ +
Sbjct: 81 GMDAEQQVQIDQ 92
>sp|Q136E5|ENO_RHOPS Enolase OS=Rhodopseudomonas palustris (strain BisB5) GN=eno PE=3
SV=1
Length = 427
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 64 IPLQCNSTTKPGPPSGSGDG-----ESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVG 118
+ L+ S + PSG+ G E R A +LGK V +A +E+ GE +G
Sbjct: 25 VVLEDGSVGRAAVPSGASTGAHEAVELRDGDKARYLGKGVLKA----VEAVNGELFDALG 80
Query: 119 RLQAEQQKQVQE 130
+ AEQQ Q+ +
Sbjct: 81 GMDAEQQVQIDQ 92
>sp|Q6N5U6|ENO_RHOPA Enolase OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
GN=eno PE=3 SV=1
Length = 427
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 64 IPLQCNSTTKPGPPSGSGDG-----ESRTVLDAFFLGKAVAEALNERIESAVGEFLSTVG 118
+ L+ S + PSG+ G E R A +LGK V +A +E+ GE +G
Sbjct: 25 VVLEDGSVGRAAVPSGASTGAHEAVELRDGDKARYLGKGVQKA----VEAVNGELFDALG 80
Query: 119 RLQAEQQKQVQE 130
+ AEQQ Q+ +
Sbjct: 81 GMDAEQQVQIDQ 92
>sp|P38966|YD089_YEAST Uncharacterized protein YDR089W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YDR089W PE=1 SV=2
Length = 869
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 134 DVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVTPASP-SEPIT 192
DVL + E A A+E R++N + SA TS+SP N+ PASP S P+
Sbjct: 193 DVLHDLENKLEDATEPAVE-------QRSLNRSDESAHTSSSPEANNSSLPASPRSIPLL 245
Query: 193 PDAET 197
+ +T
Sbjct: 246 SNKKT 250
>sp|P49253|AOF_ONCMY Amine oxidase [flavin-containing] OS=Oncorhynchus mykiss GN=mao
PE=2 SV=2
Length = 522
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 117 VGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASP 176
VGRL + E+ +E A +A E+AARE M G +P+S+ P S A P
Sbjct: 420 VGRLYFAGTETATEWS-GYMEGAVQAGERAAREVMYEMGRIPQSQIWQTEPESVEVPALP 478
Query: 177 STT 179
T
Sbjct: 479 FVT 481
>sp|P58028|AOFB_CAVPO Amine oxidase [flavin-containing] B OS=Cavia porcellus GN=MAOB PE=2
SV=2
Length = 520
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 106 IESAVGEFLST-VGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVN 164
I + G FL VGR+ + + +E A +A E+AARE + G +P+
Sbjct: 406 IMTQYGRFLRQPVGRIFFAGTETATHWS-GYMEGAVEAGERAAREVLNAIGKIPEDEIWQ 464
Query: 165 ATPVSAATSASPSTTNNVTPASPSEP 190
P S A P TT + PS P
Sbjct: 465 PEPESVDVPAQPITTTFLERHLPSVP 490
>sp|O35954|PITM1_MOUSE Membrane-associated phosphatidylinositol transfer protein 1 OS=Mus
musculus GN=Pitpnm1 PE=1 SV=1
Length = 1243
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 106 IESAVGEFLSTVG--RLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTV 163
+++ + +F+ VG R+ +Q +Q++ +E + + A E R L +
Sbjct: 202 MQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWIELSMA--DIRALEEETARMLAQRMAKC 259
Query: 164 NA--------TPVSAATSASPSTTNNVTPASPSEPITPDAETDPNPGDQ 204
N TP ++T A P T+ TP P P PDA D + G Q
Sbjct: 260 NTGSEGPEAQTPGKSSTEARPGTSTAGTPDGPEAPPGPDASPDASFGKQ 308
>sp|P56560|AOFB_BOVIN Amine oxidase [flavin-containing] B OS=Bos taurus GN=MAOB PE=1 SV=4
Length = 520
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 136 LERAKKAKEKAAREAMEVRGLVPKSRTVNATPVSAATSASPSTTNNVTPASPSEP 190
+E A +A E+AARE + G +P+ P S A P TT + PS P
Sbjct: 436 MEGAVEAGERAAREILHAMGKIPEDEIWLPEPESVDVPAKPITTTFLQRHLPSVP 490
>sp|C0MFB1|PNP_STRS7 Polyribonucleotide nucleotidyltransferase OS=Streptococcus equi
subsp. zooepidemicus (strain H70) GN=pnp PE=3 SV=1
Length = 714
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 78 SGSGDGESRTVLDAFFLG-KAVAE--ALNERIESAVGEFLSTVGRLQ--AEQQKQVQEFQ 132
SG+ + +L+A +G KA+ E A E I +AVG+ + V LQ A+ Q ++ E
Sbjct: 189 SGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQAEIIETY 248
Query: 133 EDVLERAKKAKEKAAREA 150
L++A + +EK AREA
Sbjct: 249 NADLQQAVQVEEKKAREA 266
>sp|B4U573|PNP_STREM Polyribonucleotide nucleotidyltransferase OS=Streptococcus equi
subsp. zooepidemicus (strain MGCS10565) GN=pnp PE=3 SV=1
Length = 714
Score = 32.0 bits (71), Expect = 3.2, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 78 SGSGDGESRTVLDAFFLG-KAVAE--ALNERIESAVGEFLSTVGRLQ--AEQQKQVQEFQ 132
SG+ + +L+A +G KA+ E A E I +AVG+ + V LQ A+ Q ++ E
Sbjct: 189 SGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQAEIIETY 248
Query: 133 EDVLERAKKAKEKAAREA 150
L++A + +EK AREA
Sbjct: 249 NADLQQAVQVEEKKAREA 266
>sp|C0M913|PNP_STRE4 Polyribonucleotide nucleotidyltransferase OS=Streptococcus equi
subsp. equi (strain 4047) GN=pnp PE=3 SV=1
Length = 714
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 78 SGSGDGESRTVLDAFFLG-KAVAE--ALNERIESAVGEFLSTVGRLQ--AEQQKQVQEFQ 132
SG+ + +L+A +G KA+ E A E I +AVG+ + V LQ A+ Q ++ E
Sbjct: 189 SGAKELPEAIMLEALLVGHKAIQELIAFQEEIVAAVGKEKAEVELLQVAADLQAEIIETY 248
Query: 133 EDVLERAKKAKEKAAREA 150
L++A + +EK AREA
Sbjct: 249 NADLQQAIQVEEKKAREA 266
>sp|Q5PQS4|GULP1_RAT PTB domain-containing engulfment adapter protein 1 OS=Rattus
norvegicus GN=Gulp1 PE=1 SV=1
Length = 304
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 14/161 (8%)
Query: 30 SLSSVPVI-PRTLTCSSNLKLNGLGFFGGAKSPRRI-PLQCNSTTKPGPPSGSGDGESRT 87
S+ V ++ P+T N +L+ + F K+ +RI C + D E
Sbjct: 75 SIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSESNKHLCFVFDSEKCA 134
Query: 88 VLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAA 147
+G+A A + +ES G+ + T ++ A QK++Q+ + + +E K ++
Sbjct: 135 EEITLTIGQAFDLAYRKFLESG-GKDVETRKQI-AGMQKRIQDLETENMELKNKVQDLEN 192
Query: 148 REAMEVRGLVPKSRTVNATPVSAATSASPST-TNNVTPASP 187
R ++ V++TP T SPST ++ P SP
Sbjct: 193 R---------LRTTQVSSTPAGGVTVTSPSTDIFDMIPFSP 224
>sp|Q1B551|ATPA_MYCSS ATP synthase subunit alpha OS=Mycobacterium sp. (strain MCS)
GN=atpA PE=3 SV=1
Length = 548
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 107 ESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGL 156
E V FL T G L + VQ F++++LE + +KE+ E E + L
Sbjct: 443 EQVVAIFLGTRGHLDTVPVEDVQRFEQELLEHVRSSKEEIFTEIRESKKL 492
>sp|A1UJY6|ATPA_MYCSK ATP synthase subunit alpha OS=Mycobacterium sp. (strain KMS)
GN=atpA PE=3 SV=1
Length = 548
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 107 ESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGL 156
E V FL T G L + VQ F++++LE + +KE+ E E + L
Sbjct: 443 EQVVAIFLGTRGHLDTVPVEDVQRFEQELLEHVRSSKEEIFTEIRESKKL 492
>sp|A3Q3B3|ATPA_MYCSJ ATP synthase subunit alpha OS=Mycobacterium sp. (strain JLS)
GN=atpA PE=3 SV=1
Length = 548
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 107 ESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGL 156
E V FL T G L + VQ F++++LE + +KE+ E E + L
Sbjct: 443 EQVVAIFLGTRGHLDTVPVEDVQRFEQELLEHVRSSKEEIFTEIRESKKL 492
>sp|Q9USR9|CENPC_SCHPO Centromere protein 3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cnp3 PE=4 SV=2
Length = 643
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 100 EALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAK 143
++LN + +SA GEF+ T+ R ++ KQV+ +ED L +++K
Sbjct: 378 DSLNSQSDSASGEFIKTIARNNLQEIKQVE--REDTLVGVRRSK 419
>sp|Q68FW4|STX18_RAT Syntaxin-18 OS=Rattus norvegicus GN=Stx18 PE=2 SV=1
Length = 334
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 123 EQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSR---------TVNATPVSAATS 173
E + V +F ED L+R K + + A+ V+ +V K R T P S +S
Sbjct: 129 EHRTAVLDFVEDYLKRV--CKLYSEQRAIRVKRVVDKKRLSKLEPEPHTKRKEPASEKSS 186
Query: 174 ASPSTTNNVTPASPSEPITPDAETDPNPGDQGS 206
+ S + PA+ P P AE+ P G G
Sbjct: 187 HNASQDSEEKPAAEDLPEKPLAESQPELGTWGD 219
>sp|Q9P2W9|STX18_HUMAN Syntaxin-18 OS=Homo sapiens GN=STX18 PE=1 SV=1
Length = 335
Score = 30.8 bits (68), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 123 EQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPV----------SAAT 172
E + V +F ED L+R K + + A+ V+ +V K R P S
Sbjct: 129 EHRTAVLDFIEDYLKRV--CKLYSEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKV 186
Query: 173 SASPSTTNNVTPASPSEPITPDAETDPNPGDQGS 206
S SPS + PA+ P AET P G G
Sbjct: 187 SQSPSKDSEENPATEERPEKILAETQPELGTWGD 220
>sp|Q5REB4|STX18_PONAB Syntaxin-18 OS=Pongo abelii GN=STX18 PE=2 SV=1
Length = 335
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 123 EQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPKSRTVNATPV----------SAAT 172
E + V +F ED L+R K + + A+ V+ +V K R P S
Sbjct: 129 EHRTAVLDFIEDYLKRV--CKLYSEQRAIRVKRVVDKKRLSKLEPEPNTKTRESTSSEKV 186
Query: 173 SASPSTTNNVTPASPSEPITPDAETDPNPGDQGS 206
S SPS + PA+ P AET P G G
Sbjct: 187 SRSPSKDSEENPATEERPEKILAETQPELGTWGD 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,540,914
Number of Sequences: 539616
Number of extensions: 3285462
Number of successful extensions: 18181
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 276
Number of HSP's that attempted gapping in prelim test: 17417
Number of HSP's gapped (non-prelim): 931
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)