Query 028159
Match_columns 212
No_of_seqs 49 out of 51
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 11:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q6h_A FKBP-type peptidyl-prol 85.7 5.6 0.00019 32.7 9.3 55 89-143 22-92 (224)
2 3g3z_A NMB1585, transcriptiona 83.0 6.5 0.00022 27.4 7.5 48 94-144 94-141 (145)
3 1lj9_A Transcriptional regulat 81.8 7.8 0.00027 26.8 7.5 49 94-145 92-140 (144)
4 3kp7_A Transcriptional regulat 80.9 6.9 0.00024 27.6 7.1 46 94-142 102-147 (151)
5 1fd9_A Protein (macrophage inf 80.8 12 0.00041 30.5 9.4 55 90-144 14-78 (213)
6 3deu_A Transcriptional regulat 80.2 6.1 0.00021 29.0 6.8 45 94-141 117-161 (166)
7 3nrv_A Putative transcriptiona 77.4 6.9 0.00023 27.3 6.1 44 94-140 103-146 (148)
8 1s3j_A YUSO protein; structura 75.9 5.8 0.0002 27.8 5.4 46 94-142 100-145 (155)
9 3bj6_A Transcriptional regulat 75.6 12 0.0004 26.1 6.8 46 94-142 103-148 (152)
10 3s2w_A Transcriptional regulat 74.0 12 0.00042 26.6 6.8 44 94-140 113-156 (159)
11 3ech_A MEXR, multidrug resista 73.6 10 0.00034 26.5 6.1 41 94-137 100-140 (142)
12 3e6m_A MARR family transcripti 73.5 6.7 0.00023 28.2 5.3 43 94-139 116-158 (161)
13 3eco_A MEPR; mutlidrug efflux 72.8 12 0.0004 25.8 6.2 42 94-138 96-137 (139)
14 3u2r_A Regulatory protein MARR 72.4 5.6 0.00019 28.8 4.7 46 94-142 111-156 (168)
15 2fa5_A Transcriptional regulat 72.2 13 0.00043 26.3 6.4 46 94-142 112-157 (162)
16 3bpv_A Transcriptional regulat 72.1 12 0.0004 25.6 6.1 44 94-140 92-135 (138)
17 2a61_A Transcriptional regulat 71.3 17 0.00058 25.0 6.8 46 94-142 96-141 (145)
18 2eth_A Transcriptional regulat 71.2 15 0.0005 26.1 6.6 44 94-140 107-150 (154)
19 4aik_A Transcriptional regulat 71.2 8.3 0.00028 28.2 5.4 45 94-141 95-139 (151)
20 2rdp_A Putative transcriptiona 70.0 11 0.00037 26.2 5.6 43 94-139 105-147 (150)
21 2gxg_A 146AA long hypothetical 69.9 17 0.0006 24.9 6.6 44 94-140 99-142 (146)
22 3oop_A LIN2960 protein; protei 68.2 16 0.00053 25.4 6.1 42 94-138 100-141 (143)
23 3jw4_A Transcriptional regulat 68.0 13 0.00044 26.1 5.7 41 94-137 106-146 (148)
24 1gs9_A Apolipoprotein E, APOE4 66.9 22 0.00075 28.2 7.4 50 97-146 106-155 (165)
25 3bja_A Transcriptional regulat 66.5 17 0.00057 24.7 5.9 42 94-138 96-137 (139)
26 3fm5_A Transcriptional regulat 66.3 16 0.00056 25.6 5.9 42 94-138 103-144 (150)
27 2nyx_A Probable transcriptiona 66.2 8.8 0.0003 27.9 4.6 45 94-141 108-152 (168)
28 4hbl_A Transcriptional regulat 65.1 10 0.00035 26.9 4.7 42 95-142 105-146 (149)
29 2qww_A Transcriptional regulat 64.7 6.8 0.00023 27.5 3.7 44 94-140 106-151 (154)
30 2fbh_A Transcriptional regulat 64.4 21 0.00073 24.4 6.1 42 95-139 102-143 (146)
31 2dc3_A Cytoglobin; myoglobin, 62.5 41 0.0014 26.1 8.1 37 103-139 127-165 (193)
32 3boq_A Transcriptional regulat 62.4 17 0.00059 25.5 5.5 42 94-138 111-152 (160)
33 3f3x_A Transcriptional regulat 61.6 8.7 0.0003 26.8 3.7 42 94-140 99-140 (144)
34 3k0l_A Repressor protein; heli 60.3 25 0.00085 25.1 6.1 44 94-140 109-152 (162)
35 2hr3_A Probable transcriptiona 59.8 25 0.00087 24.2 5.9 43 94-138 99-141 (147)
36 3cjn_A Transcriptional regulat 58.6 24 0.00082 24.9 5.7 43 94-139 115-157 (162)
37 3bro_A Transcriptional regulat 58.6 14 0.00047 25.3 4.3 40 95-137 100-139 (141)
38 3hsr_A HTH-type transcriptiona 58.4 16 0.00056 25.5 4.7 38 95-137 100-137 (140)
39 3r1f_A ESX-1 secretion-associa 57.6 15 0.00051 27.5 4.6 45 92-136 77-128 (135)
40 2fbk_A Transcriptional regulat 56.8 14 0.00049 27.1 4.4 44 94-140 135-178 (181)
41 2fbi_A Probable transcriptiona 56.5 26 0.00088 23.8 5.4 40 94-136 99-138 (142)
42 2rpa_A Katanin P60 ATPase-cont 55.2 50 0.0017 23.8 6.9 55 85-141 9-71 (78)
43 1tu9_A Hypothetical protein PA 53.7 24 0.00081 25.3 5.0 34 104-137 92-126 (134)
44 1gdj_A Leghemoglobin (deoxy); 53.0 38 0.0013 24.4 6.1 37 106-142 110-148 (153)
45 1yke_B RNA polymerase II holoe 52.6 58 0.002 25.7 7.5 47 102-149 68-114 (151)
46 1ykh_B RNA polymerase II holoe 52.1 67 0.0023 24.6 7.6 47 102-149 68-114 (132)
47 3hly_A Flavodoxin-like domain; 50.9 6 0.0002 29.4 1.5 53 100-152 99-155 (161)
48 3nqo_A MARR-family transcripti 50.8 31 0.0011 25.8 5.4 42 94-138 106-147 (189)
49 4b8x_A SCO5413, possible MARR- 50.7 24 0.00084 25.4 4.7 42 94-139 100-141 (147)
50 1v9d_A Diaphanous protein homo 50.5 27 0.00092 29.6 5.6 23 132-154 318-340 (340)
51 3cdh_A Transcriptional regulat 49.9 10 0.00036 26.7 2.6 44 94-140 106-149 (155)
52 3iot_A Maltose-binding protein 49.5 9.2 0.00032 31.9 2.6 21 122-142 378-398 (449)
53 3dfz_A SIRC, precorrin-2 dehyd 48.6 5.7 0.0002 32.6 1.1 35 96-130 151-185 (223)
54 3bdd_A Regulatory protein MARR 46.9 19 0.00066 24.5 3.5 44 94-140 94-138 (142)
55 2vhb_A Hemoglobin; heme, respi 46.7 70 0.0024 22.9 6.6 33 104-136 96-130 (146)
56 2nnn_A Probable transcriptiona 45.7 27 0.00093 23.7 4.1 38 94-134 101-138 (140)
57 4fx0_A Probable transcriptiona 45.6 67 0.0023 23.2 6.4 42 94-140 100-141 (148)
58 1bin_A Leghemoglobin A; heme, 43.8 44 0.0015 23.5 5.1 32 106-137 105-138 (143)
59 3dxr_A Mitochondrial import in 43.4 7.8 0.00027 28.0 1.0 27 116-142 2-28 (89)
60 3tgn_A ADC operon repressor AD 43.0 77 0.0026 21.7 6.1 41 94-137 100-143 (146)
61 1nfn_A Apolipoprotein E3; lipi 42.2 86 0.0029 25.0 7.1 48 97-144 106-153 (191)
62 1x46_A Globin chain, hemoglobi 41.5 46 0.0016 24.2 5.0 31 106-136 112-143 (150)
63 1mba_A Myoglobin; oxygen stora 40.7 35 0.0012 24.7 4.2 35 103-137 106-140 (147)
64 1pjq_A CYSG, siroheme synthase 40.6 27 0.00092 30.7 4.2 33 97-129 134-166 (457)
65 2wtg_A Globin-like protein; me 39.8 83 0.0028 24.3 6.5 41 102-142 110-150 (159)
66 4dok_A Similarity to chalcone- 38.9 45 0.0015 27.3 5.0 34 100-133 98-131 (208)
67 3pt3_A E3 ubiquitin-protein li 38.8 29 0.00099 26.3 3.6 30 104-133 24-53 (118)
68 2c0k_A Hemoglobin; oxygen tran 38.6 52 0.0018 24.1 4.9 37 103-140 107-144 (151)
69 2p4w_A Transcriptional regulat 37.8 1.3E+02 0.0046 23.7 7.6 40 119-158 146-185 (202)
70 3nr7_A DNA-binding protein H-N 37.5 94 0.0032 22.7 6.1 49 109-159 28-76 (86)
71 1wmu_A Hemoglobin D alpha chai 37.2 62 0.0021 23.4 5.1 33 105-137 100-134 (141)
72 2ig3_A Group III truncated hae 37.0 62 0.0021 24.1 5.2 40 97-136 13-58 (127)
73 2r80_A Hemoglobin subunit alph 36.5 60 0.002 23.7 5.0 34 104-137 99-134 (141)
74 2nrl_A Myoglobin; transport pr 36.2 62 0.0021 23.7 5.0 36 103-138 100-135 (147)
75 4iin_A 3-ketoacyl-acyl carrier 36.1 43 0.0015 26.0 4.3 45 93-137 40-103 (271)
76 1cg5_A Protein (hemoglobin); o 36.0 62 0.0021 23.6 5.0 35 103-137 99-134 (141)
77 2bv6_A MGRA, HTH-type transcri 35.8 49 0.0017 22.7 4.2 38 95-137 101-138 (142)
78 1okr_A MECI, methicillin resis 35.6 75 0.0026 21.6 5.1 38 95-133 76-121 (123)
79 1jeb_A Hemoglobin zeta chain; 35.6 64 0.0022 23.2 5.0 34 104-137 100-135 (142)
80 1q1f_A Neuroglobin; globin fol 35.1 72 0.0025 22.7 5.1 19 119-137 124-142 (151)
81 3ubc_A Hemoglobin-like flavopr 34.6 75 0.0026 22.4 5.1 18 119-136 109-126 (131)
82 3bk6_A PH stomatin; archaea, t 34.0 1.2E+02 0.004 23.0 6.4 28 102-129 85-123 (188)
83 3r2p_A Apolipoprotein A-I; amp 33.8 90 0.0031 24.3 5.9 41 102-142 94-134 (185)
84 2pex_A Transcriptional regulat 33.6 21 0.00073 25.0 2.0 40 94-138 110-149 (153)
85 1eyq_A Chalcone-flavonone isom 33.5 62 0.0021 26.5 5.1 33 101-133 105-137 (222)
86 3kkj_A Amine oxidase, flavin-c 33.4 23 0.00079 23.8 2.1 20 88-107 309-328 (336)
87 2w72_C Human hemoglobin A; iro 33.0 77 0.0026 22.8 5.0 35 103-137 98-134 (141)
88 3obv_E Protein diaphanous homo 32.7 1.1E+02 0.0038 27.4 7.0 24 131-154 388-411 (457)
89 2xwv_A Sialic acid-binding per 32.4 86 0.0029 25.6 5.8 39 119-157 225-266 (312)
90 3ek2_A Enoyl-(acyl-carrier-pro 32.1 40 0.0014 25.5 3.5 13 93-105 27-39 (271)
91 4fla_A Regulation of nuclear P 31.9 1.6E+02 0.0055 23.2 7.1 48 95-142 66-122 (152)
92 1ghh_A DINI, DNA-damage-induci 31.8 30 0.001 25.2 2.6 44 96-140 19-75 (81)
93 2zzv_A ABC transporter, solute 31.7 82 0.0028 26.0 5.6 38 119-156 263-303 (361)
94 3bom_B Hemoglobin subunit beta 31.6 1.1E+02 0.0036 22.5 5.7 32 106-137 106-140 (147)
95 3g89_A Ribosomal RNA small sub 31.6 41 0.0014 26.6 3.6 37 105-142 13-50 (249)
96 3o66_A Glycine betaine/carniti 31.4 40 0.0014 28.0 3.6 45 109-157 236-281 (282)
97 1u2m_A Histone-like protein HL 31.3 52 0.0018 24.1 3.9 60 98-157 57-116 (143)
98 3tb5_A Methionine aminopeptida 31.3 92 0.0032 24.6 5.6 16 142-157 145-160 (264)
99 2yy5_A Tryptophanyl-tRNA synth 31.0 1.9E+02 0.0067 24.9 8.0 54 103-157 288-343 (348)
100 1jf3_A Monomer hemoglobin comp 30.7 1.2E+02 0.0042 21.6 5.8 19 119-137 121-139 (147)
101 1sd4_A Penicillinase repressor 30.6 1.3E+02 0.0044 20.5 5.6 18 118-135 106-123 (126)
102 1jgs_A Multiple antibiotic res 30.5 43 0.0015 22.8 3.1 39 94-135 97-136 (138)
103 2l7b_A Apolipoprotein E, APO-E 30.0 1.5E+02 0.005 25.6 7.1 47 99-145 116-162 (307)
104 2pfy_A Putative exported prote 29.9 97 0.0033 24.8 5.6 38 119-156 220-260 (301)
105 1z91_A Organic hydroperoxide r 29.0 16 0.00055 25.2 0.7 40 95-139 104-143 (147)
106 4akv_A Sorting nexin-33; trans 28.5 1.6E+02 0.0054 25.5 7.1 44 98-141 324-371 (386)
107 3oig_A Enoyl-[acyl-carrier-pro 28.5 41 0.0014 25.7 3.0 44 94-137 21-83 (266)
108 3g46_A Globin-1; oxygen transp 28.5 67 0.0023 23.5 4.1 31 105-136 113-143 (146)
109 1out_B Hemoglobin I; heme, oxy 28.3 1E+02 0.0035 22.6 5.1 33 105-137 105-139 (146)
110 3s55_A Putative short-chain de 28.1 97 0.0033 24.0 5.1 12 93-104 21-32 (281)
111 2oif_A Horvu GLB1, non-legume 28.1 1.1E+02 0.0036 22.2 5.1 36 102-137 114-152 (162)
112 2pfz_A Putative exported prote 28.1 1.2E+02 0.004 24.4 5.8 39 119-157 219-260 (301)
113 2lem_A Apolipoprotein A-I; lip 28.0 1.4E+02 0.0047 23.9 6.1 44 102-145 37-80 (216)
114 4hb9_A Similarities with proba 27.9 92 0.0032 24.4 5.0 55 85-148 332-386 (412)
115 2pth_A Peptidyl-tRNA hydrolase 27.9 81 0.0028 25.8 4.8 21 116-136 149-169 (193)
116 1h97_A Globin-3; HET: HEM; 1.1 27.8 1E+02 0.0034 22.8 5.0 30 106-136 111-140 (147)
117 1sw5_A Osmoprotection protein 27.8 45 0.0015 26.4 3.2 42 112-157 232-274 (275)
118 3fx7_A Putative uncharacterize 27.5 2E+02 0.0067 21.7 7.1 46 98-144 21-66 (94)
119 1hdc_A 3-alpha, 20 beta-hydrox 27.5 57 0.0019 25.1 3.7 45 93-137 16-75 (254)
120 1cg5_B Protein (hemoglobin); o 27.3 1.1E+02 0.0037 22.6 5.1 18 119-136 116-133 (141)
121 3bom_A Hemoglobin subunit alph 27.3 1.1E+02 0.0037 22.3 5.0 34 104-137 101-136 (143)
122 4fyj_A PTH, peptidyl-tRNA hydr 27.2 56 0.0019 27.0 3.8 18 117-134 158-175 (199)
123 3ghg_A Fibrinogen alpha chain; 27.2 1.1E+02 0.0039 29.4 6.3 61 90-153 82-142 (562)
124 3oe2_A Peptidyl-prolyl CIS-tra 27.0 6.5 0.00022 32.5 -1.9 50 109-158 52-110 (219)
125 4doi_A Chalcone--flavonone iso 26.7 49 0.0017 28.0 3.5 33 101-133 116-148 (246)
126 1bdg_A Hexokinase; phosphotran 26.6 3.4E+02 0.012 24.1 9.3 70 86-155 279-390 (451)
127 1zx4_A P1 PARB, plasmid partit 26.6 40 0.0014 27.6 2.8 25 116-140 162-186 (192)
128 3l77_A Short-chain alcohol deh 26.5 55 0.0019 24.4 3.4 12 93-104 13-24 (235)
129 3d1k_A Hemoglobin subunit alph 26.5 1.1E+02 0.0039 22.0 5.0 33 105-137 101-135 (142)
130 1sct_A Hemoglobin II (carbonmo 26.4 75 0.0026 23.2 4.0 16 120-135 131-146 (150)
131 2w72_B Human hemoglobin A; iro 26.3 1.2E+02 0.0041 22.0 5.1 35 103-137 103-139 (146)
132 2atm_A Hyaluronoglucosaminidas 26.3 50 0.0017 29.5 3.5 21 133-153 143-163 (331)
133 3fni_A Putative diflavin flavo 26.3 49 0.0017 24.5 3.0 43 100-142 104-150 (159)
134 3pt8_B Hemoglobin III; oxygen 26.2 1.2E+02 0.0041 22.0 5.1 36 103-138 108-143 (152)
135 3v2h_A D-beta-hydroxybutyrate 26.0 61 0.0021 25.6 3.7 13 93-105 36-48 (281)
136 3grk_A Enoyl-(acyl-carrier-pro 26.0 90 0.0031 24.8 4.7 44 94-137 45-105 (293)
137 3r6u_A Choline-binding protein 25.9 57 0.002 27.1 3.6 44 110-157 238-282 (284)
138 1whq_A RNA helicase A; double- 25.9 94 0.0032 22.4 4.4 22 138-159 60-81 (99)
139 2wyu_A Enoyl-[acyl carrier pro 25.9 84 0.0029 24.2 4.4 13 93-105 21-33 (261)
140 3pgx_A Carveol dehydrogenase; 25.7 63 0.0022 25.1 3.7 12 93-104 26-37 (280)
141 1hlb_A Hemoglobin (deoxy); oxy 25.7 1E+02 0.0036 22.4 4.7 34 103-136 115-150 (158)
142 2r80_B Hemoglobin subunit beta 25.5 1.3E+02 0.0043 21.9 5.1 34 104-137 104-139 (146)
143 2vyw_A Hemoglobin; trematode, 25.5 94 0.0032 22.9 4.5 31 105-136 111-141 (148)
144 1xq5_A Hemoglobin alpha-1 chai 25.4 1.3E+02 0.0044 21.9 5.1 34 104-137 101-136 (143)
145 1o0x_A Methionine aminopeptida 25.3 1.4E+02 0.0046 23.8 5.6 17 141-157 157-173 (262)
146 1fcq_A Hyaluronoglucosaminidas 25.3 53 0.0018 29.7 3.5 21 133-153 147-167 (350)
147 3d1k_B Hemoglobin subunit beta 25.3 1.3E+02 0.0043 22.0 5.1 32 106-137 106-139 (146)
148 2pfy_A Putative exported prote 25.2 2.4E+02 0.0083 22.4 7.1 21 119-139 264-284 (301)
149 3ijr_A Oxidoreductase, short c 25.0 94 0.0032 24.6 4.6 13 93-105 58-70 (291)
150 3dyt_A Sorting nexin-9; 3-heli 25.0 1.7E+02 0.0059 24.9 6.6 43 99-141 305-351 (366)
151 1gcv_B Hemoglobin; oxygen stor 25.0 1.3E+02 0.0044 22.1 5.1 18 119-136 111-128 (136)
152 2bmm_A Thermostable hemoglobin 24.9 1.4E+02 0.0048 21.0 5.1 35 98-133 78-112 (123)
153 3imo_A Integron cassette prote 24.9 43 0.0015 27.0 2.6 19 126-144 29-47 (133)
154 2cfc_A 2-(R)-hydroxypropyl-COM 24.9 88 0.003 23.3 4.2 13 93-105 13-25 (250)
155 1lyp_A CAP18; lipopolysacchari 24.8 38 0.0013 21.5 1.8 19 124-142 2-20 (32)
156 1out_A Hemoglobin I; heme, oxy 24.6 1.3E+02 0.0044 22.0 5.0 33 104-136 101-135 (143)
157 2ftz_A Geranyltranstransferase 24.4 67 0.0023 27.1 3.8 47 85-138 237-284 (284)
158 3itf_A Periplasmic adaptor pro 24.3 1.9E+02 0.0066 22.5 6.2 19 119-137 118-136 (145)
159 2hzl_A Trap-T family sorbitol/ 24.3 1.3E+02 0.0046 24.7 5.6 38 119-156 256-296 (365)
160 1us7_B HSP90 CO-chaperone CDC3 24.3 70 0.0024 27.8 4.0 42 108-149 119-164 (265)
161 1v4x_B Hemoglobin beta chain; 24.3 1.4E+02 0.0047 21.9 5.1 35 103-137 103-139 (146)
162 1hlm_A Hemoglobin (cyano Met); 24.3 67 0.0023 23.4 3.4 36 101-136 113-150 (159)
163 2el7_A Tryptophanyl-tRNA synth 24.2 2.9E+02 0.01 23.6 7.9 30 128-157 299-328 (337)
164 2bgk_A Rhizome secoisolaricire 24.2 72 0.0025 24.2 3.7 13 93-105 27-39 (278)
165 2gg2_A Methionine aminopeptida 24.2 1.5E+02 0.005 23.4 5.6 17 141-157 146-162 (263)
166 3prh_A Tryptophanyl-tRNA synth 24.2 2.2E+02 0.0077 25.3 7.4 58 102-159 302-361 (388)
167 4dyv_A Short-chain dehydrogena 24.2 69 0.0023 25.3 3.7 12 93-104 39-50 (272)
168 1spg_A Hemoglobin; carbon mono 23.8 1.3E+02 0.0046 21.9 5.0 32 105-136 103-136 (144)
169 3nrc_A Enoyl-[acyl-carrier-pro 23.8 76 0.0026 24.8 3.8 44 94-137 40-99 (280)
170 2xdq_B Light-independent proto 23.7 59 0.002 28.9 3.5 61 90-150 413-492 (511)
171 3n9i_A Tryptophanyl-tRNA synth 23.5 3E+02 0.01 24.0 7.9 29 131-159 313-345 (346)
172 2bk9_A CG9734-PA; oxygen trans 23.3 1.4E+02 0.0048 21.7 5.0 30 106-136 109-139 (153)
173 4b4y_A Neuroglobin; transport 23.2 1.4E+02 0.0048 21.8 5.0 18 119-136 132-149 (154)
174 2aa1_B Hemoglobin beta-C chain 23.0 1.5E+02 0.0051 21.7 5.1 35 103-137 103-139 (146)
175 2w9y_A CE-FAR-7, fatty acid/re 23.0 1.5E+02 0.0052 23.6 5.5 44 96-143 56-99 (140)
176 1lhs_A Myoglobin; oxygen stora 23.0 1.4E+02 0.0048 21.9 5.0 36 103-138 104-141 (153)
177 3tsc_A Putative oxidoreductase 22.9 71 0.0024 24.8 3.5 13 93-105 22-34 (277)
178 1x1t_A D(-)-3-hydroxybutyrate 22.9 1.2E+02 0.004 23.2 4.7 12 93-104 15-26 (260)
179 3mx6_A Methionine aminopeptida 22.8 1.6E+02 0.0055 23.3 5.6 18 141-158 148-165 (262)
180 2wy4_A Single domain haemoglob 22.8 2E+02 0.0069 20.1 6.4 34 103-137 94-128 (140)
181 2x9g_A PTR1, pteridine reducta 22.7 1.1E+02 0.0039 23.7 4.7 13 93-105 34-46 (288)
182 3sx2_A Putative 3-ketoacyl-(ac 22.4 1.4E+02 0.0049 22.9 5.1 12 93-104 24-35 (278)
183 1or4_A Heme-based aerotactic t 22.4 1.9E+02 0.0063 21.8 5.7 53 96-151 52-104 (178)
184 1qxy_A Methionyl aminopeptidas 22.3 1.4E+02 0.0048 23.2 5.1 18 141-158 144-161 (252)
185 3v2i_A PTH, peptidyl-tRNA hydr 22.3 77 0.0026 26.7 3.8 24 116-143 179-202 (222)
186 3t7c_A Carveol dehydrogenase; 22.2 1.4E+02 0.0047 23.7 5.1 13 93-105 39-51 (299)
187 1kyq_A Met8P, siroheme biosynt 22.1 55 0.0019 27.6 2.9 14 97-110 172-185 (274)
188 3u65_B TP33 protein; tetratric 22.0 1.2E+02 0.0039 25.4 4.8 38 119-156 239-279 (328)
189 2ot3_A RAB5 GDP/GTP exchange f 21.9 2.7E+02 0.0091 23.1 7.0 42 99-140 30-71 (274)
190 4e6p_A Probable sorbitol dehyd 21.9 88 0.003 24.0 3.8 12 93-104 19-30 (259)
191 3dii_A Short-chain dehydrogena 21.8 86 0.0029 24.0 3.7 13 93-105 13-25 (247)
192 1wma_A Carbonyl reductase [NAD 21.7 89 0.003 23.2 3.7 12 93-104 15-26 (276)
193 2ksc_A Cyanoglobin; hemeprotei 21.5 1.5E+02 0.0053 21.0 4.8 38 97-136 15-54 (123)
194 1hxh_A 3BETA/17BETA-hydroxyste 21.5 86 0.0029 24.0 3.7 13 93-105 17-29 (253)
195 2a01_A Apolipoprotein A-I; fou 21.5 1.4E+02 0.0049 24.2 5.2 38 100-137 146-183 (243)
196 1tzy_D Histone H4-VI; histone- 21.5 91 0.0031 22.6 3.6 27 122-148 53-79 (103)
197 1nff_A Putative oxidoreductase 21.5 87 0.003 24.2 3.7 12 93-104 18-29 (260)
198 3kzv_A Uncharacterized oxidore 21.5 89 0.003 24.0 3.7 13 93-105 13-25 (254)
199 2oo2_A Hypothetical protein AF 21.5 1E+02 0.0036 22.6 3.9 36 98-145 3-41 (86)
200 2x4h_A Hypothetical protein SS 21.4 1.4E+02 0.0046 20.7 4.4 38 95-134 74-111 (139)
201 3grp_A 3-oxoacyl-(acyl carrier 21.4 87 0.003 24.5 3.7 12 93-104 38-49 (266)
202 3gvc_A Oxidoreductase, probabl 21.4 77 0.0026 25.1 3.5 12 93-104 40-51 (277)
203 3ak8_A DNA protection during s 21.3 2.2E+02 0.0074 21.6 5.9 15 97-111 28-42 (167)
204 2pe4_A Hyaluronidase-1; hyalur 21.3 69 0.0024 29.7 3.5 21 133-153 146-166 (424)
205 1ryb_A CRS2; alpha-beta, hydro 21.2 84 0.0029 26.1 3.8 22 117-142 164-185 (205)
206 2eqb_B RAB guanine nucleotide 21.2 2.7E+02 0.0093 21.0 6.6 44 105-148 9-52 (97)
207 2g36_A Tryptophanyl-tRNA synth 21.1 3.5E+02 0.012 23.2 7.8 18 81-98 243-263 (340)
208 2yfw_B Histone H4, H4; cell cy 21.1 1E+02 0.0034 22.5 3.8 26 122-147 53-78 (103)
209 1ith_A Hemoglobin (cyano Met); 21.1 1.7E+02 0.0058 20.9 5.0 31 105-136 106-137 (141)
210 2pfz_A Putative exported prote 21.0 3.2E+02 0.011 21.8 8.1 22 118-139 262-283 (301)
211 3u5t_A 3-oxoacyl-[acyl-carrier 20.9 1.6E+02 0.0053 23.1 5.1 13 93-105 38-50 (267)
212 4fgs_A Probable dehydrogenase 20.8 83 0.0028 26.0 3.6 11 94-104 41-51 (273)
213 3f1l_A Uncharacterized oxidore 20.8 1.4E+02 0.005 22.7 4.8 13 93-105 23-35 (252)
214 2cpt_A SKD1 protein, vacuolar 20.7 2.7E+02 0.0091 20.7 6.4 25 120-144 57-81 (117)
215 2hpg_A ABC transporter, peripl 20.7 1.4E+02 0.0049 24.6 5.1 39 119-157 240-282 (327)
216 3pt8_A Hemoglobin II; oxygen c 20.7 1.2E+02 0.0043 21.9 4.2 37 102-138 107-143 (152)
217 4fkc_A XAA-Pro aminopeptidase; 20.6 92 0.0032 25.8 3.9 17 141-157 286-302 (377)
218 2b4l_A Glycine betaine-binding 20.4 60 0.002 26.5 2.7 55 110-170 110-169 (268)
219 1sct_B Hemoglobin II (carbonmo 20.2 1.1E+02 0.0038 22.2 3.9 17 119-135 131-147 (151)
220 3pxx_A Carveol dehydrogenase; 20.2 1.7E+02 0.0059 22.3 5.1 13 93-105 21-33 (287)
221 4dry_A 3-oxoacyl-[acyl-carrier 20.1 1.3E+02 0.0046 23.7 4.6 12 93-104 44-55 (281)
222 3oec_A Carveol dehydrogenase ( 20.1 1.6E+02 0.0055 23.6 5.1 13 93-105 57-69 (317)
223 3aog_A Glutamate dehydrogenase 20.1 1.4E+02 0.0049 27.1 5.3 26 133-158 404-440 (440)
224 3op4_A 3-oxoacyl-[acyl-carrier 20.0 1E+02 0.0035 23.6 3.8 12 93-104 20-31 (248)
225 4hoy_A PTH, peptidyl-tRNA hydr 20.0 80 0.0027 25.8 3.3 20 116-135 149-168 (193)
No 1
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=85.66 E-value=5.6 Score=32.75 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=38.2
Q ss_pred HHHHHhhHHHHHHHHHH---------------HHHHHHHHhhhhccc-cHHHHHHHHHHHHHHHHHHHHHH
Q 028159 89 LDAFFLGKAVAEALNER---------------IESAVGEFLSTVGRL-QAEQQKQVQEFQEDVLERAKKAK 143 (212)
Q Consensus 89 L~AFFLGRAlAEvL~ER---------------lEsavtd~LSevGKf-dAEQre~LrqFqEEV~eRA~rea 143 (212)
--+|-+|..+++-|..+ +-..|.|+|..=.++ +.|-++.|++|+++++++.+.+.
T Consensus 22 ~~sY~~G~~~g~~~~~~~~~~~~~g~~~d~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (224)
T 1q6h_A 22 KSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKM 92 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999888775 333566666653345 45568888999999887765433
No 2
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=82.97 E-value=6.5 Score=27.43 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKE 144 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae 144 (212)
-|+++.+.+.+.+......++.. ++.|.++.|.+..+.+....+++.+
T Consensus 94 ~G~~~~~~~~~~~~~~~~~~~~~---l~~~e~~~l~~~l~~l~~~l~~~~~ 141 (145)
T 3g3z_A 94 TGKAYAAPLTESAQEFSDKVFAT---FGDKRTTRLFADLDALAEVMEKTIS 141 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999888888888765 5688999999998888877766543
No 3
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=81.76 E-value=7.8 Score=26.79 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEK 145 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~ 145 (212)
-|+.+.+.+.+.+...+..++. .++.|+++.|.++.+.+.+..+...++
T Consensus 92 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l~~~~~~ 140 (144)
T 1lj9_A 92 KGKNVYPIIVRENQHSNQVALQ---GLSEVEISQLADYLVRMRKNVSEDWEF 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 4888888888888888777765 567899999999999988877766443
No 4
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=80.93 E-value=6.9 Score=27.60 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
-|+.+.+.+.+.+...+.+++.. ++.|.++.+.++.+.+.+..+..
T Consensus 102 ~G~~~~~~~~~~~~~~~~~~~~~---l~~~e~~~l~~~l~~l~~~l~~~ 147 (151)
T 3kp7_A 102 KGKKYIKERKAIMSHIASDMTSD---FDSKEIEKVRQVLEIIDYRIQSY 147 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT---SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999988888888877655 78899999999999988777654
No 5
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=80.84 E-value=12 Score=30.49 Aligned_cols=55 Identities=11% Similarity=0.302 Sum_probs=39.6
Q ss_pred HHHHhhHHHHHHHHHH--------HHHHHHHHhhhh-ccc-cHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 90 DAFFLGKAVAEALNER--------IESAVGEFLSTV-GRL-QAEQQKQVQEFQEDVLERAKKAKE 144 (212)
Q Consensus 90 ~AFFLGRAlAEvL~ER--------lEsavtd~LSev-GKf-dAEQre~LrqFqEEV~eRA~reae 144 (212)
-+|-+|..+++-|... +-..|.|+|..= -++ +.|.++.|++|+++++++.+.+.+
T Consensus 14 ~sY~~G~~~g~~l~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (213)
T 1fd9_A 14 LSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFN 78 (213)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999888654 556777777652 234 466788899999998877654433
No 6
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=80.16 E-value=6.1 Score=29.02 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKK 141 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~r 141 (212)
-|+.+++.+.+.+...+.+++. .|+.|.+++|.++.+.+.+..++
T Consensus 117 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~l~~~l~~ 161 (166)
T 3deu_A 117 KAEPLIAEMEEVIHKTRGEILA---GISSEEIELLIKLIAKLEHNIME 161 (166)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999888888888776 57889999999999888877654
No 7
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=77.43 E-value=6.9 Score=27.31 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+++.+.+.+.+......++. .+++|.++.|.++.+.+.+..+
T Consensus 103 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l~ 146 (148)
T 3nrv_A 103 MGQELYEVASDFAIEREKQLLE---EFEEAEKDQLFILLKKLRNKVD 146 (148)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTT---TCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhh
Confidence 4899999999888888888765 4788999999999988877654
No 8
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=75.93 E-value=5.8 Score=27.78 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
.|+++.+.+.+.+...+..++. .++.|+++.|.++.+.+....++.
T Consensus 100 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l~~~ 145 (155)
T 1s3j_A 100 EGDIKFEEVLAGRKAIMARYLS---FLTEEEMLQAAHITAKLAQAAETD 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4889998888888888888765 567888899998888887766544
No 9
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=75.56 E-value=12 Score=26.13 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
.|+.+.+.+.+.+...+..++. .++.|+++.|.+..+.+.+..++.
T Consensus 103 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l~~~ 148 (152)
T 3bj6_A 103 RGEAIITAIRADEMAKLALFSE---GFSSVELTAYHKVQLALTRFFADL 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4888888888888877777765 577889999999888887766544
No 10
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=74.02 E-value=12 Score=26.62 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+++++.+.+.+......++. .|+.|.++.|.++.+.+.+..+
T Consensus 113 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l~ 156 (159)
T 3s2w_A 113 KGKKLEPDMKKIASEWGEILFS---SFDDRQRREITNSLEIMFENGL 156 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHH
Confidence 4889999888888888887765 5788999999888888876554
No 11
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=73.59 E-value=10 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~e 137 (212)
-|+++.+.+.+.+...+..+++ .|+.|.++.|.++.+.+.+
T Consensus 100 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~ 140 (142)
T 3ech_A 100 EGLAIHLHAELIMSRVHDELFA---PLTPVEQATLVHLLDQCLA 140 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHh
Confidence 4888999888888888887764 5789999999998887764
No 12
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=73.47 E-value=6.7 Score=28.15 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA 139 (212)
-|+++.+.+.+.+.....+++. .|+.|+++.|.++.+.+....
T Consensus 116 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~l~~~l 158 (161)
T 3e6m_A 116 KGKKKLAEISPLINDFHAELVG---NVDPDKLQTCIEVLGEILKGK 158 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 4899999999998888888876 578899999998888877654
No 13
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=72.80 E-value=12 Score=25.81 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
-|+.+.+.+.+.+......++. .++.|.++.|.++.+.+.+.
T Consensus 96 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~ 137 (139)
T 3eco_A 96 SGIKLVEAFTSIFDEMEQTLVS---QLSEEENEQMKANLTKMLSS 137 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHh
Confidence 4899999999988888888776 56788899999888887654
No 14
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=72.41 E-value=5.6 Score=28.77 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
-|+.+++.+.+.+...+..++. .|+.|.++.|.++.+.+....+..
T Consensus 111 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~l~~~l~~~ 156 (168)
T 3u2r_A 111 AGLKLLKDLEEPVRQCHERQLG---HLAADELHELIRLMELARTPHEEP 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhccc
Confidence 4888999888888888888776 567899999999988888776543
No 15
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=72.17 E-value=13 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
-|+.+.+.+.+.+...+.+++. .++.|.++.|.++.+.+.+..+.+
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~~~~~ 157 (162)
T 2fa5_A 112 AGRQVYETVAPLVNEMEQRLMS---VFSAEEQQTLERLIDRLAKDGLPR 157 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhhhhh
Confidence 5888888888888887777765 467788899999998888776554
No 16
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.14 E-value=12 Score=25.57 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+++.+.+.+.+...+..++. .++.|+++.+.+..+.+....+
T Consensus 92 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~~~~~l~ 135 (138)
T 3bpv_A 92 RGEEIIPLILKVEERWEDLLFR---DFTEDERKLFRKMCRRLAEEAV 135 (138)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTT---TSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888777777655 5678899999998888876554
No 17
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=71.29 E-value=17 Score=24.98 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
.|+.+.+.+.+.+...+.+++.. ++.|.++.|.+..+.+....+..
T Consensus 96 ~G~~~~~~~~~~~~~~~~~~~~~---l~~~e~~~l~~~l~~l~~~l~~~ 141 (145)
T 2a61_A 96 KGEEVIEKVIERRENFIEKITSD---LGKEKSSKILDYLKELKGVMERN 141 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHh
Confidence 48888888888888888877754 57788888888888887665543
No 18
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=71.18 E-value=15 Score=26.05 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+.+.+.+.+.+...+.+++. .++.|+.+.|.++.+.+.+..+
T Consensus 107 ~G~~~~~~~~~~~~~~~~~~~~---~l~~ee~~~l~~~L~~l~~~l~ 150 (154)
T 2eth_A 107 KGKEIFGEILSNFESLLKSVLE---KFSEEDFKVVSEGFNRMVEALS 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHH
Confidence 5888888888888888888775 4667888889888888876654
No 19
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=71.17 E-value=8.3 Score=28.24 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKK 141 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~r 141 (212)
-|+++.+.+.+.+.....++++. |++|.++.|..+.+.+.+..++
T Consensus 95 ~G~~~~~~~~~~~~~~~~~~~~~---l~~ee~~~l~~~L~kl~~nl~~ 139 (151)
T 4aik_A 95 QSSPIIEQVDGVISSTRKEILGG---ISSDEIAVLSGLIDKLEKNIIQ 139 (151)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 38889998888888888887664 6789999999888887765543
No 20
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=69.98 E-value=11 Score=26.22 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA 139 (212)
-|+.+.+.+.+.+...+..++. .++.|.++.|.+..+.+....
T Consensus 105 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l 147 (150)
T 2rdp_A 105 KGERIIEEVIEKRQRDLANVLE---SFSDEEIVVFERCLRKLHQEM 147 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG---GSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888777764 567888888988888876654
No 21
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=69.89 E-value=17 Score=24.94 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+.+.+.+.+.++..+.+++. .++.|..+.|.++.+.+.+..+
T Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~~~~~l~ 142 (146)
T 2gxg_A 99 KGLETFNKGIEIYKKLANEVTG---DLSEDEVILVLDKISKILKRIE 142 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888888765 5678888888888888776554
No 22
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=68.18 E-value=16 Score=25.40 Aligned_cols=42 Identities=10% Similarity=0.251 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
-|+++.+.+.+.+.....+++. .++.|.++.+.++.+.+.+.
T Consensus 100 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~l~~~ 141 (143)
T 3oop_A 100 KGRKETTELRDIVEASCEKMFA---GVTRTDLEQFTAILKNISTN 141 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHh
Confidence 4889999998888888888775 57889999998888877654
No 23
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=68.05 E-value=13 Score=26.06 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~e 137 (212)
-|+++++.+.+.+......++. .++.|.++.|.++.+.+.+
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~l~~ 146 (148)
T 3jw4_A 106 KGAALVEEFNNIFLEVEESITK---GLTKDEQKQLMSILIKVNR 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT---TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHH
Confidence 4899999999988888888765 5778888888888877754
No 24
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=66.94 E-value=22 Score=28.18 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 97 AVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKA 146 (212)
Q Consensus 97 AlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~a 146 (212)
...|.|+.||+--+.++=..||+.-.|.|+.|..+.+|..++..+..+.-
T Consensus 106 ~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeL 155 (165)
T 1gs9_A 106 ADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDL 155 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35677889999999999999999999999999999999999999886643
No 25
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=66.47 E-value=17 Score=24.71 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
.|+.+.+.+.+.+...+.+++. .++.|+.+.+.+..+.+.+.
T Consensus 96 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~ 137 (139)
T 3bja_A 96 KGEETKKQVDVQYSDFLKENCG---CFTKEEEGILEDLLLKWKKH 137 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHh
Confidence 4888888888888888877764 56788888888888877654
No 26
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=66.30 E-value=16 Score=25.60 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
-|+++.+.+.+.+.....+++ ..|+.|.++.|.++.+.+.+.
T Consensus 103 ~G~~~~~~~~~~~~~~~~~~~---~~l~~~e~~~l~~~L~~l~~~ 144 (150)
T 3fm5_A 103 EGRRLRDDAKARVDAAHGRYF---EGIPDTVVNQMRDTLQSIAFP 144 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHhc
Confidence 489999999888888888887 467889999998888877643
No 27
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=66.16 E-value=8.8 Score=27.93 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKK 141 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~r 141 (212)
.|+++.+.+.+.+...+.+++. .++.|+++.|.++.+.+.+..+.
T Consensus 108 ~G~~~~~~~~~~~~~~~~~~~~---~l~~ee~~~l~~~L~~l~~~l~~ 152 (168)
T 2nyx_A 108 RGRDVVRQVTEHRRTEIARIVE---QMAPAERHGLVRALTAFTEAGGE 152 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHhcC
Confidence 5888888888888888877766 46788889999888888765543
No 28
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=65.09 E-value=10 Score=26.86 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 95 GRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
|+++++.+.+.+... -+..|+.|.++.|.++.+.+.+..+..
T Consensus 105 G~~~~~~~~~~~~~~------~~~~l~~~e~~~l~~~l~~l~~~l~~~ 146 (149)
T 4hbl_A 105 GQQQQEAVFEAISSC------LPQEFDTTEYDETKYVFEELEQTLKHL 146 (149)
T ss_dssp HHHHHHHHHHHHHTT------SCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666554 566889999999999999888877654
No 29
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=64.72 E-value=6.8 Score=27.50 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHH--HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNER--IESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ER--lEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+.+.+.+.+. +...+.+++. .++.|++++|.++.+.+....+
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l~ 151 (154)
T 2qww_A 106 KGEDLSKRSTANAFMYKAMMKVFE---NLTENEIEELIRLNKKVETLLK 151 (154)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHh
Confidence 488888888888 7777777764 5778999999998888876654
No 30
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=64.44 E-value=21 Score=24.39 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 95 GRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA 139 (212)
|+.+.+.+.+.++....+++. .++.|.++.|.++.+.+....
T Consensus 102 G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l 143 (146)
T 2fbh_A 102 ADVLIADIEAIAASVRNDVLT---GIDESEQALCQQVLLRILANL 143 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777765 567888888888888776554
No 31
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=62.48 E-value=41 Score=26.11 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhh-hc-cccHHHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLST-VG-RLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 103 ~ERlEsavtd~LSe-vG-KfdAEQre~LrqFqEEV~eRA 139 (212)
.+-++++|..+|.+ +| .|+.|.++.|+.|...|..--
T Consensus 127 f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l 165 (193)
T 2dc3_A 127 FKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHV 165 (193)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 45 799999999999988876544
No 32
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=62.40 E-value=17 Score=25.54 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
-|+.+.+.+.+.+...+..++. .++.|.++.|.+..+.+.+.
T Consensus 111 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~ 152 (160)
T 3boq_A 111 AGLTTFKQASEAHNRILAELLR---AVSDQDMVEASAALRGILES 152 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHH
Confidence 4888888888888888888766 47788888998888887644
No 33
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=61.60 E-value=8.7 Score=26.76 Aligned_cols=42 Identities=31% Similarity=0.369 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+++.+.+.+.+.....+++..+ |.++++.++.+.+.+..+
T Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~~l-----~e~~~l~~~l~~l~~~l~ 140 (144)
T 3f3x_A 99 KGRQVLLEANEVLRNLVNEMLSDV-----ENVEELLEGLNKILSRIG 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC-----CCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998888 777788888777776554
No 34
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=60.31 E-value=25 Score=25.14 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+++.+.+.+.+......++. .|+.|.++.|.+..+.+.+..+
T Consensus 109 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~l~~~l~ 152 (162)
T 3k0l_A 109 SGLDKLNQCNQVVQQLEAQMLQ---GVDINLAFLIRNNLELMVKNLS 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TSCHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHH
Confidence 4889998888888888877764 5788999999988888876554
No 35
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=59.79 E-value=25 Score=24.21 Aligned_cols=43 Identities=7% Similarity=-0.041 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
-|+.+.+.+.+.++..+.+++. ..++.|.++.|.+..+.+..-
T Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~--~~l~~~e~~~l~~~l~~l~~~ 141 (147)
T 2hr3_A 99 EGRRNLYGNRAKREEWLVRAMH--ACLDESERALLAAAGPLLTRL 141 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHH
Confidence 5888999888888888888776 156678888888877655443
No 36
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=58.64 E-value=24 Score=24.94 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA 139 (212)
.|+.+.+.+.+.+...+..++. .++.|+++.|.+..+.+.+..
T Consensus 115 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~~l 157 (162)
T 3cjn_A 115 AGRAVYDRLWPHMRASHDRMFQ---GITPQERQAFLATLNKMLANI 157 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 4888888888888888777765 567888888888888776543
No 37
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=58.56 E-value=14 Score=25.31 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 95 GRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~e 137 (212)
|+.+++.+.+.++.....++. .++.|.++.|.+..+.+.+
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~ 139 (141)
T 3bro_A 100 ANKLETIILSYMDSDQSQMTS---GLNKEEVVFLEKILKRMIE 139 (141)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT---TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHh
Confidence 788888888877777777765 5677888888888877754
No 38
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=58.44 E-value=16 Score=25.46 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 95 GRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~e 137 (212)
|+++++.+.+.+...... + .+++|.++.+.+..+.+.+
T Consensus 100 G~~~~~~~~~~~~~~~~~----~-~l~~~e~~~l~~~L~~l~~ 137 (140)
T 3hsr_A 100 GKAIKSPLAEISVKVFNE----F-NISEREASDIINNLRNFVS 137 (140)
T ss_dssp HHHTHHHHHHHHHHHHHT----S-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----c-CCCHHHHHHHHHHHHHHHH
Confidence 777777776666555444 4 8999999999998888764
No 39
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=57.63 E-value=15 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHhhHHHHHHHHHHHHH-------HHHHHhhhhccccHHHHHHHHHHHHHHH
Q 028159 92 FFLGKAVAEALNERIES-------AVGEFLSTVGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 92 FFLGRAlAEvL~ERlEs-------avtd~LSevGKfdAEQre~LrqFqEEV~ 136 (212)
||+|...++.+.+.|+- -|.+++-....++.|.++.|..+++++.
T Consensus 77 yl~~~~~~~~~~~el~ll~~~rd~~v~~l~~r~~~Ls~e~~~~l~~ii~~l~ 128 (135)
T 3r1f_A 77 YFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDELR 128 (135)
T ss_dssp HHHCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTSCCHHHHHHHHHHHHHHC
T ss_pred HHcCCcchhhHHHHHHHHHHHhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 67888777766666541 1233444455699999999999998874
No 40
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=56.80 E-value=14 Score=27.11 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
.|+++++.+.+.+...+..++. .++.|.++.|.+..+.+....+
T Consensus 135 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L~~l~~~l~ 178 (181)
T 2fbk_A 135 QGRALVTHLLPAHLATTQRVLA---PLSAQEQRTLEELAGRMLAGLE 178 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TSCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHh
Confidence 5899999998888888888776 4667888888888888776543
No 41
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.52 E-value=26 Score=23.84 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~ 136 (212)
-|+.+.+.+.+.+...+..++. .++.|+++.|.+..+.+.
T Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~ 138 (142)
T 2fbi_A 99 KGQQCFVSMSGDMEKNYQRIQE---RFGEEKLAQLLELLNELK 138 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHHH
Confidence 4888888888888877777775 456788888888777664
No 42
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.24 E-value=50 Score=23.75 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=43.6
Q ss_pred chhhHHHHHhhHHH--------HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHH
Q 028159 85 SRTVLDAFFLGKAV--------AEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKK 141 (212)
Q Consensus 85 SnpvL~AFFLGRAl--------AEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~r 141 (212)
-.++.+.-=++|-. |-+.++.+-..+...|..++ |+..|.+|++.++||.+--+.
T Consensus 9 ~~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~--d~~~r~kW~~~~~ei~~E~~~ 71 (78)
T 2rpa_A 9 LQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVK--DTHLRQKWQQVWQEINVEAKQ 71 (78)
T ss_dssp SHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcC--CHHHHHhHHHHHHHHHHHHHH
Confidence 34556666666643 56888999999999999998 999999999999999875543
No 43
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=53.73 E-value=24 Score=25.26 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhhc-cccHHHHHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLSTVG-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 104 ERlEsavtd~LSevG-KfdAEQre~LrqFqEEV~e 137 (212)
+-+.+.|..+|.++| .|++|.++.|+.|...|..
T Consensus 92 ~~~~~~Ll~~l~~lg~~~t~e~~~AW~~~~~~~a~ 126 (134)
T 1tu9_A 92 DLWLDALLMAVAEHDRDCDAETRDAWRDVMGRGIA 126 (134)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 344445555555555 4899999999988887654
No 44
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A* 1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A* 2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Probab=52.99 E-value=38 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHHHHHHHH
Q 028159 106 IESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 106 lEsavtd~LSev-G-KfdAEQre~LrqFqEEV~eRA~re 142 (212)
+++.|.++|.++ | .|+.|.++.|..+...|..--...
T Consensus 110 ~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~l~~~ 148 (153)
T 1gdj_A 110 VKEAILKTIKEVVGAKWSEELNSAWTIAYDELAIVIKKE 148 (153)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555553 4 688998888888888776544433
No 45
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=52.59 E-value=58 Score=25.71 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 102 LNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAARE 149 (212)
Q Consensus 102 L~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~e 149 (212)
+..|-=+.|.+.|=.++.-.+||.++|++..+|-.+ |+++.+++.+|
T Consensus 68 ~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~-~~~el~~~v~e 114 (151)
T 1yke_B 68 LKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVE-VEDEKIEAIKK 114 (151)
T ss_dssp HHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 345556689999999999999999999999988644 44444444333
No 46
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=52.15 E-value=67 Score=24.60 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 102 LNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAARE 149 (212)
Q Consensus 102 L~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~e 149 (212)
+..|-=+.|.+.|=.++.-.+||.++|++..+|-.+ |.++.+++.+|
T Consensus 68 ~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~-~~~el~~~v~e 114 (132)
T 1ykh_B 68 LKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVE-VEDEKIEAIKK 114 (132)
T ss_dssp HHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344556789999999999999999999999988544 44444444443
No 47
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=50.92 E-value=6 Score=29.42 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=32.3
Q ss_pred HHHHHHHHH----HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 100 EALNERIES----AVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAME 152 (212)
Q Consensus 100 EvL~ERlEs----avtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~ 152 (212)
+.|.++|+. .|.+.+---|+-|.|..+++++|-+++.++.++.+...+++-|+
T Consensus 99 ~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~~~~~~~~~~~~ 155 (161)
T 3hly_A 99 DALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTRADAIQTMKSLE 155 (161)
T ss_dssp HHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Confidence 344555544 23344445688899999999999999998888877777776665
No 48
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=50.78 E-value=31 Score=25.83 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
-|+++++.+.+.+...+..++ ..|+.|.++.|.++.+.+...
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~---~~l~~ee~~~l~~~L~~l~~~ 147 (189)
T 3nqo_A 106 LGKKVMVTCSRTGINFMADVF---HEFTKDELETLWSLLKKMYRF 147 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHH
Confidence 489999999998888888876 567789999998888877644
No 49
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=50.71 E-value=24 Score=25.40 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA 139 (212)
-|+++.+.+.+.+.. +.+. +..|++|++++|..+.+.+...|
T Consensus 100 ~G~~~~~~~~~~~~~-~~~~---l~~l~~ee~~~l~~~L~~l~~~~ 141 (147)
T 4b8x_A 100 KGREVVEAATRDLMA-MDFG---LGAYDAEECGEIFAMLRPLRVAA 141 (147)
T ss_dssp HHHHHHHHHHHHHHH-TGGG---TTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HHHH---HhCCCHHHHHHHHHHHHHHHHHc
Confidence 378888777766654 3444 46789999999988887775543
No 50
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=50.46 E-value=27 Score=29.60 Aligned_cols=23 Identities=48% Similarity=0.619 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 028159 132 QEDVLERAKKAKEKAAREAMEVR 154 (212)
Q Consensus 132 qEEV~eRA~reae~aa~e~~~~~ 154 (212)
+||-+.||+.++++|.+|.+++|
T Consensus 318 ~eek~~~~~~~~e~~~~~~~~~~ 340 (340)
T 1v9d_A 318 TEEKMRRAKLAKEKAEKERLEKQ 340 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 35556667777777777666653
No 51
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=49.90 E-value=10 Score=26.66 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
.|+.+.+.+.+.+...+..++.. ++.|+++.|.+..+.+....+
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~---l~~~e~~~l~~~l~~l~~~l~ 149 (155)
T 3cdh_A 106 DGRALAESLVASARAHETRLLSA---LADTDAARIKGVLRTLLDVLD 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---TTTSGGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhc
Confidence 58888888888888888888765 456777778887777776544
No 52
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=49.53 E-value=9.2 Score=31.86 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028159 122 AEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 122 AEQre~LrqFqEEV~eRA~re 142 (212)
++++++++|||++-++.-++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~ 398 (449)
T 3iot_A 378 MKAFESLKSFQQQQQQQQQQQ 398 (449)
T ss_dssp HHHHHHHHHTC----------
T ss_pred HHHHHHHHhhccccccccCCC
Confidence 556666666665544444433
No 53
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=48.55 E-value=5.7 Score=32.60 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Q 028159 96 KAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQE 130 (212)
Q Consensus 96 RAlAEvL~ERlEsavtd~LSevGKfdAEQre~Lrq 130 (212)
=++|..|.++||+.+.+-+.++-++-.+.|+.|++
T Consensus 151 P~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~ 185 (223)
T 3dfz_A 151 PLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHR 185 (223)
T ss_dssp HHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 46899999999998887777777777777777753
No 54
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=46.94 E-value=19 Score=24.49 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=32.1
Q ss_pred hhHHHH-HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVA-EALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlA-EvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+.+. +.+.+.++.....++. .++.|..+.|.++.+.+....+
T Consensus 94 ~G~~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~~~~~l~ 138 (142)
T 3bdd_A 94 QAREALITNPSAHHQAIKTSMNQ---ILTVEESEQFLATLDKLLIGLQ 138 (142)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHH
Confidence 377777 7777777777776665 5678888888888888766543
No 55
>2vhb_A Hemoglobin; heme, respiratory protein, oxygen transport; HET: HEM; 1.76A {Vitreoscilla stercoraria} SCOP: a.1.1.2 PDB: 1vhb_A* 3vhb_A* 4vhb_A*
Probab=46.72 E-value=70 Score=22.91 Aligned_cols=33 Identities=3% Similarity=-0.055 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhh-hc-cccHHHHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLST-VG-RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 104 ERlEsavtd~LSe-vG-KfdAEQre~LrqFqEEV~ 136 (212)
+-+.+.|..+|.+ +| .|++|..+.|..+...|.
T Consensus 96 ~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~ 130 (146)
T 2vhb_A 96 PIVGQELLGAIKEVLGDAATDDILDAWGKAYGVIA 130 (146)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHH
Confidence 4455566666666 44 599999999999887764
No 56
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=45.70 E-value=27 Score=23.66 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQED 134 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEE 134 (212)
-|+.+.+.+.+.+......++.. ++.|.++.+.++.+.
T Consensus 101 ~G~~~~~~~~~~~~~~~~~~~~~---l~~~e~~~l~~~l~~ 138 (140)
T 2nnn_A 101 AGRAELEAGLAAAREINRQALAP---LSLQEQETLRGLLAR 138 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Confidence 47888888888877777777664 567777777766554
No 57
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=45.59 E-value=67 Score=23.21 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-|+++.+.+...++.+..+++..||.+ | ++++....+.+.++
T Consensus 100 ~G~~~~~~~~~~~~~~~~~~~~~l~e~--~---~l~~~L~~L~~~~e 141 (148)
T 4fx0_A 100 KGRAALQKAVPLWRGVQAEVTASVGDW--P---RVRRDIANLGQAAE 141 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSSCH--H---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHH--H---HHHHHHHHHHHHHH
Confidence 488888888888888888888888732 2 35555555544443
No 58
>1bin_A Leghemoglobin A; heme, nitrogen fixation, multigene family, oxygen transport; HET: HEM; 2.20A {Glycine max} SCOP: a.1.1.2 PDB: 1fsl_A*
Probab=43.80 E-value=44 Score=23.55 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=20.8
Q ss_pred HHHHHHHHhhh-hc-cccHHHHHHHHHHHHHHHH
Q 028159 106 IESAVGEFLST-VG-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 106 lEsavtd~LSe-vG-KfdAEQre~LrqFqEEV~e 137 (212)
+.+.|..+|.+ +| .|++|.++.|.++...|..
T Consensus 105 ~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~ia~ 138 (143)
T 1bin_A 105 VKEALLKTIKAAVGDKWSDELSRAWEVAYDELAA 138 (143)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33333334433 33 6999999999999887653
No 59
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=43.35 E-value=7.8 Score=28.05 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=10.5
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 116 TVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 116 evGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
++.++++++++.|++|++|.+.++-.+
T Consensus 2 ~m~~l~~~~~~el~~~~~e~q~k~~~~ 28 (89)
T 3dxr_A 2 SMDALNSKEQQEFQKVVEQKQMKDFMR 28 (89)
T ss_dssp ------------CCHHHHHHHHHHHHH
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999998766654433
No 60
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=43.03 E-value=77 Score=21.68 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=29.9
Q ss_pred hhHHHHHHHH---HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALN---ERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 94 LGRAlAEvL~---ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~e 137 (212)
-|+.+.+.+. +........++. .++.|.++.|.++.+.+.+
T Consensus 100 ~g~~~~~~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~l~~l~~ 143 (146)
T 3tgn_A 100 LARPIAEEHHHHHEHTLLTYEQVAT---QFTPNEQKVIQRFLTALVG 143 (146)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 4777877777 666666666654 5678888888888877664
No 61
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=42.20 E-value=86 Score=25.04 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 97 AVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKE 144 (212)
Q Consensus 97 AlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae 144 (212)
.=.|.|+.||+-...++-..|++---|.|++|.=+.+|+.++.+...+
T Consensus 106 kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~e 153 (191)
T 1nfn_A 106 ADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 153 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999888765
No 62
>1x46_A Globin chain, hemoglobin component VII; diptera, midge larva, oxygen storage/transport complex; HET: HEM; 1.50A {Tokunagayusurika akamusi}
Probab=41.46 E-value=46 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=16.6
Q ss_pred HHHHHHHHhhh-hccccHHHHHHHHHHHHHHH
Q 028159 106 IESAVGEFLST-VGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 106 lEsavtd~LSe-vGKfdAEQre~LrqFqEEV~ 136 (212)
++++|..+|.+ +|.|+.|.++.|+.|...|.
T Consensus 112 ~~~~Ll~~l~~~lg~~t~e~~~AW~~~~~~i~ 143 (150)
T 1x46_A 112 FETALEAFLESHASGYNAGTKKAWDSAFNNMY 143 (150)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34444444443 33466666666666666554
No 63
>1mba_A Myoglobin; oxygen storage; HET: HEM; 1.60A {Aplysia limacina} SCOP: a.1.1.2 PDB: 2fal_A* 3mba_A* 4mba_A* 5mba_A* 2fam_A* 1dm1_A*
Probab=40.68 E-value=35 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 103 ~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~e 137 (212)
.+-++++|..+|.+.+.|+.|.++.|+.|...|..
T Consensus 106 f~~~~~~ll~~l~~~~~~t~e~~~AW~~~~~~va~ 140 (147)
T 1mba_A 106 FENVRSMFPGFVASVAAPPAGADAAWTKLFGLIID 140 (147)
T ss_dssp HHHHHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44566667777777777888888888877776643
No 64
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=40.56 E-value=27 Score=30.67 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Q 028159 97 AVAEALNERIESAVGEFLSTVGRLQAEQQKQVQ 129 (212)
Q Consensus 97 AlAEvL~ERlEsavtd~LSevGKfdAEQre~Lr 129 (212)
.+|..|+++||+.+.+-+.++-++-.+.|+.++
T Consensus 134 ~la~~ir~~ie~~l~~~~~~~~~~~~~~R~~~~ 166 (457)
T 1pjq_A 134 VLARLLREKLESLLPQHLGQVARYAGQLRARVK 166 (457)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 578999999999987766666666555555553
No 65
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=39.84 E-value=83 Score=24.30 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 102 LNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 102 L~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
.+.-++.+|.++|.++..|+.|..+.|..+...+....++.
T Consensus 110 hy~~v~~~Ll~~L~~~l~~t~~~~~AW~~~~~~i~~~i~~~ 150 (159)
T 2wtg_A 110 LWMAFFTVFTGYLESVGSLNDQQKAAWMALGKEFNAESQTH 150 (159)
T ss_dssp HHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888888887799999999999988887776665
No 66
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=38.89 E-value=45 Score=27.29 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 028159 100 EALNERIESAVGEFLSTVGRLQAEQQKQVQEFQE 133 (212)
Q Consensus 100 EvL~ERlEsavtd~LSevGKfdAEQre~LrqFqE 133 (212)
+.+.+.+++.+.+.+...|++.++..+.|++|.+
T Consensus 98 ~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~ 131 (208)
T 4dok_A 98 AQYGVQLENTVRDRLAEEDKYEEEEETELEKVVG 131 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 4456777777888888899997777788888865
No 67
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=38.78 E-value=29 Score=26.33 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLSTVGRLQAEQQKQVQEFQE 133 (212)
Q Consensus 104 ERlEsavtd~LSevGKfdAEQre~LrqFqE 133 (212)
|+...+|..+...|-.|+.|+|.+|-+|+-
T Consensus 24 ~~~~~~i~wFW~vv~~~~~eer~~fL~FvT 53 (118)
T 3pt3_A 24 EKLLQFKRWFWSIVEKMSMTERQDLVYFWT 53 (118)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCHHHHHHHHhHhc
Confidence 345566667777778899999999999973
No 68
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=38.63 E-value=52 Score=24.15 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLST-VGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 103 ~ERlEsavtd~LSe-vGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
.+-++++|..+|.+ +| |+.|.++.|..|...|..--.
T Consensus 107 f~~~~~~Ll~~l~~~lg-~t~e~~~AW~k~~~~va~~~~ 144 (151)
T 2c0k_A 107 YNELKDIIIEVVCSCVK-LNEKQVHAYHKFFDRAYDIAF 144 (151)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 56 999999999999887765433
No 69
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=37.77 E-value=1.3e+02 Score=23.71 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 028159 119 RLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVP 158 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~~~g~~~ 158 (212)
+.-++.++.++..+.+|+.|+..+.+..--+.+.+-|-++
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 185 (202)
T 2p4w_A 146 RELEEARILIETYIENTMRRLAEENRQIIEEIFRDIEKIL 185 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTTS
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5567788899999999999999999998888888876544
No 70
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=37.52 E-value=94 Score=22.69 Aligned_cols=49 Identities=22% Similarity=0.334 Sum_probs=29.7
Q ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Q 028159 109 AVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLVPK 159 (212)
Q Consensus 109 avtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~~~g~~~k 159 (212)
.|.++|..|.+.=.|.|+.-.+-+.+-.+|. ++-...++.|..+|+-|.
T Consensus 28 ~Lee~leKl~~VveERree~~~~~~~~~er~--~Kl~~~~e~l~~~GI~~e 76 (86)
T 3nr7_A 28 TLEEMLEKLEVVVNERREEESAAAAEVEERT--RKLQQYREMLIADGIDPN 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCCHH
Confidence 3445555666666677766555444443332 344556788999999773
No 71
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=37.18 E-value=62 Score=23.37 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhh-hc-cccHHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLST-VG-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 105 RlEsavtd~LSe-vG-KfdAEQre~LrqFqEEV~e 137 (212)
-++++|..+|.+ +| .|++|.++.|+.|...|..
T Consensus 100 ~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~ 134 (141)
T 1wmu_A 100 LLSHCFQVVLGAHLGREYTPQVQVAYDKFLAAVSA 134 (141)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 344444444444 23 5888888888887776643
No 72
>2ig3_A Group III truncated haemoglobin; truncated hemoglobin, 2-ON-2 globin, oxygen storage-transpor; HET: HEM; 2.15A {Campylobacter jejuni}
Probab=37.05 E-value=62 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHH--HHHHHhhhhcc----ccHHHHHHHHHHHHHHH
Q 028159 97 AVAEALNERIES--AVGEFLSTVGR----LQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 97 AlAEvL~ERlEs--avtd~LSevGK----fdAEQre~LrqFqEEV~ 136 (212)
+|++.+|+||.. .|+.++....+ =..+.++++.+|...++
T Consensus 13 ~LV~~FY~~v~~Dp~l~p~F~~~~~~~~~d~~~~~~~l~~F~~~~l 58 (127)
T 2ig3_A 13 KLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWKEHKAKIGNFWAGML 58 (127)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhHHHHHhccccccccCHHHHHHHHHHHHHHHh
Confidence 344444444443 34444443322 23455555666655553
No 73
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=36.51 E-value=60 Score=23.70 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhh-hc-cccHHHHHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLST-VG-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 104 ERlEsavtd~LSe-vG-KfdAEQre~LrqFqEEV~e 137 (212)
+-++++|..+|.+ +| .|++|.++.|..|...|..
T Consensus 99 ~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 134 (141)
T 2r80_A 99 KLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGT 134 (141)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 3444555555544 34 6899999999988887753
No 74
>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus} PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A* 3qma_A* 1myt_A* 2nrm_A*
Probab=36.24 E-value=62 Score=23.71 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 103 ~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
.+-++++|..+|.+.+.|++|.++.+..|...|..-
T Consensus 100 f~~~~~~Ll~~l~~~~~~t~e~~~AW~~~~~~v~~~ 135 (147)
T 2nrl_A 100 FKLISEVLVKVMQEKAGLDAGGQTALRNVMGIIIAD 135 (147)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 344556666666666789999999999998877653
No 75
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=36.15 E-value=43 Score=25.95 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=24.9
Q ss_pred HhhHHHHHHHHHH-------------HHHHHHHHhhhhc------cccHHHHHHHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER-------------IESAVGEFLSTVG------RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 93 FLGRAlAEvL~ER-------------lEsavtd~LSevG------KfdAEQre~LrqFqEEV~e 137 (212)
++|+++|+.|-++ ..+.+.+.+.+.| +.|....+.++++.+++.+
T Consensus 40 gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 103 (271)
T 4iin_A 40 GIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQ 103 (271)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 5899999988653 2233333333322 3355555566666666544
No 76
>1cg5_A Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_A*
Probab=36.03 E-value=62 Score=23.60 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLST-VGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 103 ~ERlEsavtd~LSe-vGKfdAEQre~LrqFqEEV~e 137 (212)
.+-++++|..+|.+ +|.|++|.++.|..|...|..
T Consensus 99 f~~~~~~ll~~l~~~lg~~t~e~~~AW~k~~~~va~ 134 (141)
T 1cg5_A 99 FHLFADCIVVTLAVNLQAFTPVTHCAVDKFLELVAY 134 (141)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 44556666666655 457999999999999887753
No 77
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=35.77 E-value=49 Score=22.67 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 95 GRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~e 137 (212)
|+.+++.+.+.++... ..+ .++.|+.++|.+..+.+..
T Consensus 101 G~~~~~~~~~~~~~~~----~~~-~l~~~e~~~l~~~l~~~~~ 138 (142)
T 2bv6_A 101 SETIRPELSNASDKVA----SAS-SLSQDEVKELNRLLGKVIH 138 (142)
T ss_dssp HHHHHHHHTTHHHHHH----HHT-TCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH----HHh-CCCHHHHHHHHHHHHHHHH
Confidence 7777777766555544 334 7899999999888877654
No 78
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=35.60 E-value=75 Score=21.59 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHH--------HHHHhhhhccccHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESA--------VGEFLSTVGRLQAEQQKQVQEFQE 133 (212)
Q Consensus 95 GRAlAEvL~ERlEsa--------vtd~LSevGKfdAEQre~LrqFqE 133 (212)
|+++++.+.+.++.. +..++. -..+++|.++.|.++.+
T Consensus 76 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ls~ee~~~l~~~L~ 121 (123)
T 1okr_A 76 SDIKYKTSKNFINKVYKGGFNSLVLNFVE-KEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHH-HSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHh-CCCCCHHHHHHHHHHHh
Confidence 777777776666654 223331 16789999888887653
No 79
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=35.58 E-value=64 Score=23.24 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhh-hc-cccHHHHHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLST-VG-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 104 ERlEsavtd~LSe-vG-KfdAEQre~LrqFqEEV~e 137 (212)
+-++++|..+|.+ +| .|+.|.++.|+.|...|..
T Consensus 100 ~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~ 135 (142)
T 1jeb_A 100 KLLSHCLLVTLAARFPADFTAEAHAAWDKFLSVVSS 135 (142)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 3444555555554 34 5888888888888877653
No 80
>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*
Probab=35.06 E-value=72 Score=22.74 Aligned_cols=19 Identities=5% Similarity=0.134 Sum_probs=15.7
Q ss_pred cccHHHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~e 137 (212)
.|+.|.++.|..+...|..
T Consensus 124 ~~t~e~~~AW~~~~~~v~~ 142 (151)
T 1q1f_A 124 DFTPATRTAWSRLYGAVVQ 142 (151)
T ss_dssp GSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 6899999999998887754
No 81
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=34.57 E-value=75 Score=22.40 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=14.0
Q ss_pred cccHHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~ 136 (212)
.|++|.++.|++|...|.
T Consensus 109 ~~t~e~~~AW~~~~~~va 126 (131)
T 3ubc_A 109 GFTEEAKAAWTKVYGIAA 126 (131)
T ss_dssp GSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 588888888888877664
No 82
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=33.97 E-value=1.2e+02 Score=23.00 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhc-----------cccHHHHHHHH
Q 028159 102 LNERIESAVGEFLSTVG-----------RLQAEQQKQVQ 129 (212)
Q Consensus 102 L~ERlEsavtd~LSevG-----------KfdAEQre~Lr 129 (212)
|+++|.+.|.+.|..+| .++.|.++.+.
T Consensus 85 i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~ 123 (188)
T 3bk6_A 85 LNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMA 123 (188)
T ss_dssp HHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHH
Confidence 45556666666666666 45566555554
No 83
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=33.79 E-value=90 Score=24.26 Aligned_cols=41 Identities=10% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 102 LNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 102 L~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
++.||+-.+.++-..+++==.+.|++|.=+++|+.+++++.
T Consensus 94 ~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~ 134 (185)
T 3r2p_A 94 VKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQK 134 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555554555544555555555666666555544
No 84
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=33.56 E-value=21 Score=24.96 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 94 LGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
-|+++.+.+.+.++..+.. ..++.|+++.|.++.+.+.+.
T Consensus 110 ~G~~~~~~~~~~~~~~~~~-----~~l~~~e~~~l~~~l~~l~~~ 149 (153)
T 2pex_A 110 TGRALRSKAGAVPEQVFCA-----SACSLDELRQLKQELEKLRSS 149 (153)
T ss_dssp HHHHGGGGSTTHHHHHHHH-----HTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHH
Confidence 3666665555554443322 578899999888888877654
No 85
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Probab=33.46 E-value=62 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 028159 101 ALNERIESAVGEFLSTVGRLQAEQQKQVQEFQE 133 (212)
Q Consensus 101 vL~ERlEsavtd~LSevGKfdAEQre~LrqFqE 133 (212)
.+.+.+++.+.+.+...|++.++..+.|.+|.+
T Consensus 105 ~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~ 137 (222)
T 1eyq_A 105 EYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAE 137 (222)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccccchHHHHHHHHH
Confidence 445556666666666777776666667766643
No 86
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=33.39 E-value=23 Score=23.78 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.8
Q ss_pred hHHHHHhhHHHHHHHHHHHH
Q 028159 88 VLDAFFLGKAVAEALNERIE 107 (212)
Q Consensus 88 vL~AFFLGRAlAEvL~ERlE 107 (212)
+-.|+.-|+.+|+.|.|.|+
T Consensus 309 v~~A~~sG~~aA~~I~~~L~ 328 (336)
T 3kkj_A 309 VEGAWLSGQEAARRLLEHLQ 328 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 77899999999999998875
No 87
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=33.01 E-value=77 Score=22.80 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 103 ~ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~e 137 (212)
.+-+++.|..+|.+. | .|++|.++.|..|...|..
T Consensus 98 f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~ 134 (141)
T 2w72_C 98 FKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVST 134 (141)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 334555555555554 4 5888888888888877653
No 88
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=32.74 E-value=1.1e+02 Score=27.40 Aligned_cols=24 Identities=46% Similarity=0.540 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 028159 131 FQEDVLERAKKAKEKAAREAMEVR 154 (212)
Q Consensus 131 FqEEV~eRA~reae~aa~e~~~~~ 154 (212)
=+||-+.||+-++++|-+|-++++
T Consensus 388 e~eek~~r~~~a~e~~~~~~~e~~ 411 (457)
T 3obv_E 388 ETEEKMRRAKLAKEKAEKERLEKQ 411 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888877653
No 89
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=32.35 E-value=86 Score=25.64 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCC
Q 028159 119 RLQAEQQKQVQEFQEDVLERAK---KAKEKAAREAMEVRGLV 157 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA~---reae~aa~e~~~~~g~~ 157 (212)
++++|+|+.|++=.+|...... .+.+.++++.|+++|..
T Consensus 225 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~ 266 (312)
T 2xwv_A 225 ELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQGVK 266 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 4567888888876665544332 23456677888888864
No 90
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=32.06 E-value=40 Score=25.48 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=10.6
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 27 giG~~ia~~l~~~ 39 (271)
T 3ek2_A 27 SIAYGIAKACKRE 39 (271)
T ss_dssp SHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHc
Confidence 4899999998754
No 91
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=31.92 E-value=1.6e+02 Score=23.17 Aligned_cols=48 Identities=31% Similarity=0.394 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH------H---HHHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESAVGEFLSTVGRLQAEQQKQ------V---QEFQEDVLERAKKA 142 (212)
Q Consensus 95 GRAlAEvL~ERlEsavtd~LSevGKfdAEQre~------L---rqFqEEV~eRA~re 142 (212)
.|+=++.|.+.+++++...-.=+|+..+|..++ | .+|+++++..|+..
T Consensus 66 Dk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~ 122 (152)
T 4fla_A 66 DKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKK 122 (152)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888999998888888888888886543 2 24555555555443
No 92
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=31.81 E-value=30 Score=25.24 Aligned_cols=44 Identities=27% Similarity=0.439 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHH-------------hhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 96 KAVAEALNERIESAVGEF-------------LSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 96 RAlAEvL~ERlEsavtd~-------------LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
-||...|..||....-|+ |+..|--.. -++++.++.||+-+-|+
T Consensus 19 ~aL~~EL~kRl~~~fpd~~~~V~Vr~~s~n~lsV~g~~k~-dKe~i~eiLqE~we~AD 75 (81)
T 1ghh_A 19 DALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKE-DKQRISEILQETWESAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHCSSSCCEEEEEEESSCEEEEESCCHH-HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhhCCCCCceEEEeecCCCceeecCCChh-HHHHHHHHHHHHHhChh
Confidence 368889999999877664 666675554 79999999999988775
No 93
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=31.67 E-value=82 Score=26.01 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCC
Q 028159 119 RLQAEQQKQVQEFQEDVLERAK---KAKEKAAREAMEVRGL 156 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA~---reae~aa~e~~~~~g~ 156 (212)
+++.|+|+.|++-.+|..+... .+.+..+.+.|.++|.
T Consensus 263 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~ 303 (361)
T 2zzv_A 263 SLPKPLQERFIAAVHEYSWIHYAGIQKANLEAWPKYRQAGV 303 (361)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 3677888888886666554433 2344566777788885
No 94
>3bom_B Hemoglobin subunit beta-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_B* 3bcq_B* 1spg_B*
Probab=31.64 E-value=1.1e+02 Score=22.55 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhh-c-c-ccHHHHHHHHHHHHHHHH
Q 028159 106 IESAVGEFLSTV-G-R-LQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 106 lEsavtd~LSev-G-K-fdAEQre~LrqFqEEV~e 137 (212)
++++|..+|.+. | . |++|.++.|..|...|..
T Consensus 106 ~~~~Ll~~l~~~lg~~~~t~e~~~AW~k~~~~va~ 140 (147)
T 3bom_B 106 LADCITVCVAAKLGPAVFSADTQEAFQKFLAVVVS 140 (147)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHH
Confidence 344444444332 2 4 899999999999887753
No 95
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=31.59 E-value=41 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhhcc-ccHHHHHHHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLSTVGR-LQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 105 RlEsavtd~LSevGK-fdAEQre~LrqFqEEV~eRA~re 142 (212)
.+.+.+.+.|.++|- .+. |.+++..|.+.+.++.++.
T Consensus 13 ~~~~~l~~~~~~~g~~l~~-~~~~~~~~~~~l~~~~~~~ 50 (249)
T 3g89_A 13 RGRALLLEGGKALGLDLKP-HLEAFSRLYALLQEASGKV 50 (249)
T ss_dssp HHHHHHHHHHHHHTCCCGG-GHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCCccH-HHHHHHHHHHHHHHHhcCC
Confidence 344556667777785 666 9999999999999987753
No 96
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=31.36 E-value=40 Score=28.00 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHHHhhhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028159 109 AVGEFLSTV-GRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLV 157 (212)
Q Consensus 109 avtd~LSev-GKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~~~g~~ 157 (212)
-+.++|..| |+|+.|+- ++...+|... .+..+.+|++.|++.||+
T Consensus 236 ~~~~~L~~l~~~lt~~~m---~~ln~~v~~~-~~~~~~vA~~wL~~~gl~ 281 (282)
T 3o66_A 236 ELKTTINKLTGKISTSEM---QRLNYEADGK-GKEPAVVAEEFLKKHHYF 281 (282)
T ss_dssp HHHHHHHTTTTCCCHHHH---HHHHHHHHTS-CCCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccCCHHHH---HHHHHHHHhC-CCCHHHHHHHHHHHcCCC
Confidence 466777888 49988763 3344445421 346788999999999986
No 97
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=31.28 E-value=52 Score=24.08 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028159 98 VAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLV 157 (212)
Q Consensus 98 lAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~~~g~~ 157 (212)
+.+...++.+.-+.....++-++..+.++.|++-.++++..-......|..++..+.|+-
T Consensus 57 ls~~~~~~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak~~gy~ 116 (143)
T 1u2m_A 57 KAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDID 116 (143)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 344444555555666666677777777777777777888888888888888888888874
No 98
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Probab=31.25 E-value=92 Score=24.59 Aligned_cols=16 Identities=19% Similarity=0.082 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcCCC
Q 028159 142 AKEKAAREAMEVRGLV 157 (212)
Q Consensus 142 eae~aa~e~~~~~g~~ 157 (212)
+..+|+++.++..|+.
T Consensus 145 di~~a~~~~~~~~g~~ 160 (264)
T 3tb5_A 145 DIGHAIQTYVEGEGYG 160 (264)
T ss_dssp HHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCCc
Confidence 3456788889998874
No 99
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=31.02 E-value=1.9e+02 Score=24.87 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhhccccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028159 103 NERIESAVGEFLSTVGRLQAE--QQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLV 157 (212)
Q Consensus 103 ~ERlEsavtd~LSevGKfdAE--Qre~LrqFqEEV~eRA~reae~aa~e~~~~~g~~ 157 (212)
.+.|-+.|.+.|..+-+-=+| ..+ |.++.++=-+||+.-+++--.++-+.-|+.
T Consensus 288 K~~La~~i~~~l~pire~~~~~~d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 288 KNALTEATVNLLVNIQRKREQISREQ-VFNCLQAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444455555555443322111 122 788888888888877777777777777774
No 100
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=30.74 E-value=1.2e+02 Score=21.60 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=13.2
Q ss_pred cccHHHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~e 137 (212)
.|++|.++.|..|...|..
T Consensus 121 ~~t~e~~~AW~~~~~~v~~ 139 (147)
T 1jf3_A 121 KMNAAAKDAWAAAYGDISG 139 (147)
T ss_dssp GSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 4777777777777776643
No 101
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=30.56 E-value=1.3e+02 Score=20.47 Aligned_cols=18 Identities=11% Similarity=0.409 Sum_probs=15.4
Q ss_pred ccccHHHHHHHHHHHHHH
Q 028159 118 GRLQAEQQKQVQEFQEDV 135 (212)
Q Consensus 118 GKfdAEQre~LrqFqEEV 135 (212)
..++.|..+.|+++.+.+
T Consensus 106 ~~ls~ee~~~l~~~L~~~ 123 (126)
T 1sd4_A 106 EELNNKEIEELRDILNDI 123 (126)
T ss_dssp TCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 679999999999888765
No 102
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=30.54 E-value=43 Score=22.76 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhccccHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNERIE-SAVGEFLSTVGRLQAEQQKQVQEFQEDV 135 (212)
Q Consensus 94 LGRAlAEvL~ERlE-savtd~LSevGKfdAEQre~LrqFqEEV 135 (212)
-|+.+.+.+.+.+. .....++.. ++.|.++.|.+..+.+
T Consensus 97 ~G~~~~~~~~~~~~~~~~~~~~~~---l~~~e~~~l~~~l~~l 136 (138)
T 1jgs_A 97 GGAAICEQCHQLVGQDLHQELTKN---LTADEVATLEYLLKKV 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---TTTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHh
Confidence 48888888888887 777777655 4556666676665543
No 103
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=30.00 E-value=1.5e+02 Score=25.61 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 99 AEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEK 145 (212)
Q Consensus 99 AEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~ 145 (212)
.|.++.||+--+.++--.||+=--|.|++|..+.+|+.++.++..+.
T Consensus 116 lEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~ee 162 (307)
T 2l7b_A 116 MEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADD 162 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 56777788888888888889888899999999999999999887654
No 104
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=29.91 E-value=97 Score=24.82 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCC
Q 028159 119 RLQAEQQKQVQEFQEDVLERAKK---AKEKAAREAMEVRGL 156 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA~r---eae~aa~e~~~~~g~ 156 (212)
++++|+|+.|++-.+|...+... +.+..+.+.|.+.|.
T Consensus 220 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~ 260 (301)
T 2pfy_A 220 RLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGM 260 (301)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34567777777665555544432 233446666777775
No 105
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=28.99 E-value=16 Score=25.24 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 95 GRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA 139 (212)
|+.+++.+.+.++.... .+ .++.|+++.|.+..+.+.+..
T Consensus 104 G~~~~~~~~~~~~~~~~----~~-~l~~~e~~~l~~~l~~l~~~l 143 (147)
T 1z91_A 104 GALLKEKAVDIPGTILG----LS-KQSGEDLKQLKSALYTLLETL 143 (147)
T ss_dssp HHSGGGGTTTHHHHHHH----HT-CCCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH----Hc-CCCHHHHHHHHHHHHHHHHHH
Confidence 66666555554444433 34 788899999988888776543
No 106
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=28.54 E-value=1.6e+02 Score=25.55 Aligned_cols=44 Identities=7% Similarity=0.147 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccHHH----HHHHHHHHHHHHHHHHH
Q 028159 98 VAEALNERIESAVGEFLSTVGRLQAEQ----QKQVQEFQEDVLERAKK 141 (212)
Q Consensus 98 lAEvL~ERlEsavtd~LSevGKfdAEQ----re~LrqFqEEV~eRA~r 141 (212)
-++.+.+|.|.+...++.|+..|+.|. +..|++|.+.=+.-+++
T Consensus 324 ~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~ 371 (386)
T 4akv_A 324 EADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQR 371 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999998776 34445555544444443
No 107
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=28.50 E-value=41 Score=25.75 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHH------------HHHHHHHHhhhhcc-------ccHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNER------------IESAVGEFLSTVGR-------LQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 94 LGRAlAEvL~ER------------lEsavtd~LSevGK-------fdAEQre~LrqFqEEV~e 137 (212)
+|+++|+.|-++ .++.+.+.+.+++. .|--..+.++++.+++.+
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 21 IAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 899999988653 33444444444433 344444556666666544
No 108
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=28.49 E-value=67 Score=23.48 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLSTVGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 105 RlEsavtd~LSevGKfdAEQre~LrqFqEEV~ 136 (212)
-++++|..+|.+. .|+.|.++.|..|...|.
T Consensus 113 ~~~~~ll~~l~~~-~~t~e~~~AW~k~~~~va 143 (146)
T 3g46_A 113 KINGPIKKVLASK-NFGDKYANAWAKLVAVVQ 143 (146)
T ss_dssp GGHHHHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence 3455555555555 677777777776666553
No 109
>1out_B Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_B*
Probab=28.34 E-value=1e+02 Score=22.61 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhh--ccccHHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLSTV--GRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 105 RlEsavtd~LSev--GKfdAEQre~LrqFqEEV~e 137 (212)
-++++|..+|.+. ..|++|.++.|..|...|..
T Consensus 105 ~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T 1out_B 105 VLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVA 139 (146)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 3444444444443 36889999999888877643
No 110
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=28.12 E-value=97 Score=24.00 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=9.3
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+|+|+.|-+
T Consensus 21 gIG~a~a~~l~~ 32 (281)
T 3s55_A 21 GMGRSHAVALAE 32 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 588888888854
No 111
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=28.10 E-value=1.1e+02 Score=22.23 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhh-c--cccHHHHHHHHHHHHHHHH
Q 028159 102 LNERIESAVGEFLSTV-G--RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 102 L~ERlEsavtd~LSev-G--KfdAEQre~LrqFqEEV~e 137 (212)
-.+-++++|..+|.++ | .|+.|.++.|..+...|..
T Consensus 114 ~f~~~~~~Ll~~l~~~lg~~~~t~e~~~AW~~~~~~i~~ 152 (162)
T 2oif_A 114 HFEVTRFALLETIKEALPADMWGPEMRNAWGEAYDQLVA 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHH
Confidence 3455666666666664 4 6999999999988887754
No 112
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=28.07 E-value=1.2e+02 Score=24.41 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=23.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCC
Q 028159 119 RLQAEQQKQVQEFQEDVLERAKK---AKEKAAREAMEVRGLV 157 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA~r---eae~aa~e~~~~~g~~ 157 (212)
++++|+|+.|++=.+|...+... +.+..+.+.|.++|..
T Consensus 219 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~ 260 (301)
T 2pfz_A 219 ALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMA 260 (301)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 44567777777765555544432 3334566777777753
No 113
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=27.95 E-value=1.4e+02 Score=23.91 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 102 LNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEK 145 (212)
Q Consensus 102 L~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~ 145 (212)
|++.|.-.+++.+.++.+.-.+.+++|--|.+|+..+-..+.+.
T Consensus 37 l~qqL~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~ 80 (216)
T 2lem_A 37 LGQQLNLNLLENWDTLGSTVSQLQERLGPLTRDFWDNLEKETDW 80 (216)
T ss_dssp HHHHHHHHHHHTTTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHH
Confidence 45666667888888888888888888988888888877766554
No 114
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=27.89 E-value=92 Score=24.36 Aligned_cols=55 Identities=11% Similarity=0.271 Sum_probs=0.0
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 85 SRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAR 148 (212)
Q Consensus 85 SnpvL~AFFLGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~ 148 (212)
+-.+.||+.|++.|++++... .++...-+.+.+.-+...++|++.+.+..+.+..
T Consensus 332 n~ai~DA~~La~~L~~~~~~~---------~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~~~~~ 386 (412)
T 4hb9_A 332 NTALRDALLLTQKLASVASGH---------EELVKAISDYEQQMRAYANEIVGISLRSAQNAVI 386 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 115
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=27.89 E-value=81 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=14.0
Q ss_pred hhccccHHHHHHHHHHHHHHH
Q 028159 116 TVGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 116 evGKfdAEQre~LrqFqEEV~ 136 (212)
.||+|..|+++.|.+-.+++.
T Consensus 149 VL~~f~~~E~~~l~~~i~~a~ 169 (193)
T 2pth_A 149 VLGKPPVSEQKLIDEAIDEAA 169 (193)
T ss_dssp HTSCCCHHHHHHHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHH
Confidence 378899998887765444433
No 116
>1h97_A Globin-3; HET: HEM; 1.17A {Paramphistomum epiclitum} SCOP: a.1.1.2 PDB: 1kfr_A*
Probab=27.81 E-value=1e+02 Score=22.78 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 028159 106 IESAVGEFLSTVGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 106 lEsavtd~LSevGKfdAEQre~LrqFqEEV~ 136 (212)
+++.|..+|.+. .|.+|.++.|..|...|.
T Consensus 111 ~~~~Ll~~l~~~-~~t~e~~~AW~k~~~~va 140 (147)
T 1h97_A 111 GEPIFTKYFQNL-VKDAEGKAAVEKFLKHVF 140 (147)
T ss_dssp HHHHHHHHHHHH-SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence 444444445454 677777777777666553
No 117
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=27.78 E-value=45 Score=26.41 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=26.6
Q ss_pred HHhhhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028159 112 EFLSTV-GRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLV 157 (212)
Q Consensus 112 d~LSev-GKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~~~g~~ 157 (212)
++|..| |+|+.|+-..| ..+|... .+..+.+|++.|++.||+
T Consensus 232 ~~l~~l~~~l~~~~~~~l---~~~v~~~-~~~~~~vA~~wl~~~~l~ 274 (275)
T 1sw5_A 232 SVLKLLEDRIDTDTMRAL---NYQYDVE-KKDAREIAMSFLKEQGLV 274 (275)
T ss_dssp HHHHTTTTCCCHHHHHHH---HHHHHTS-CCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHccCCHHHHHHH---HHHHHhc-CCCHHHHHHHHHHHcCCC
Confidence 455554 67877653333 3344321 346678899999999987
No 118
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=27.55 E-value=2e+02 Score=21.66 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 98 VAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKE 144 (212)
Q Consensus 98 lAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae 144 (212)
|.+.|++++.. |...+..||-|+-++|...-+-.++.+.+-++-.+
T Consensus 21 F~d~Lq~~~~~-L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e 66 (94)
T 3fx7_A 21 FKELLREEVNS-LSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE 66 (94)
T ss_dssp HHHHHHHHHHH-HHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544 45567788889999998887777777777666655
No 119
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=27.45 E-value=57 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=24.5
Q ss_pred HhhHHHHHHHHHH---------HHHHHHHHhhhhc------cccHHHHHHHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER---------IESAVGEFLSTVG------RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 93 FLGRAlAEvL~ER---------lEsavtd~LSevG------KfdAEQre~LrqFqEEV~e 137 (212)
++|+++|+.|.++ -++.+.+...++| +.|-...+.++++.+++.+
T Consensus 16 gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (254)
T 1hdc_A 16 GLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 6899999988653 1122222333332 2354455666666666654
No 120
>1cg5_B Protein (hemoglobin); oxygen transport; HET: HEM; 1.60A {Dasyatis akajei} SCOP: a.1.1.2 PDB: 1cg8_B*
Probab=27.32 E-value=1.1e+02 Score=22.62 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=12.9
Q ss_pred cccHHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~ 136 (212)
.|++|-++.|..|...|.
T Consensus 116 ~~t~e~~~AW~k~~~~va 133 (141)
T 1cg5_B 116 TFRPKEHAAAYKFFRLVA 133 (141)
T ss_dssp GCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 477777777777777654
No 121
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=27.32 E-value=1.1e+02 Score=22.28 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 104 ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~e 137 (212)
+-++++|..+|.+. | .|++|.++.|.+|...|..
T Consensus 101 ~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 136 (143)
T 3bom_A 101 KILAHNLIVVIAAYFPAEFTPEIHLSVDKFLQQLAL 136 (143)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 44555555555553 4 7999999999998887753
No 122
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=27.21 E-value=56 Score=26.99 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=12.9
Q ss_pred hccccHHHHHHHHHHHHH
Q 028159 117 VGRLQAEQQKQVQEFQED 134 (212)
Q Consensus 117 vGKfdAEQre~LrqFqEE 134 (212)
||+|..|+++.|.+..++
T Consensus 158 L~~f~~~E~~~l~~~i~~ 175 (199)
T 4fyj_A 158 LGRAPRSEQELLDTSIDF 175 (199)
T ss_dssp TSCCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 789999998877544333
No 123
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.16 E-value=1.1e+02 Score=29.42 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=42.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028159 90 DAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEV 153 (212)
Q Consensus 90 ~AFFLGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~~ 153 (212)
++|=+=+.+-|.|.+++.... |--..+..+-.|.|++++...++|....+ .-++-+..|++
T Consensus 82 dseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQls--nIrvLQsnLed 142 (562)
T 3ghg_A 82 DSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQ--HIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 455555777777777777766 55667788888999999999999888762 22444444443
No 124
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=27.04 E-value=6.5 Score=32.55 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=7.7
Q ss_pred HHHHHhhhh-ccc-cHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCCc
Q 028159 109 AVGEFLSTV-GRL-QAEQQKQVQEFQEDVLERAKKAK-------EKAAREAMEVRGLVP 158 (212)
Q Consensus 109 avtd~LSev-GKf-dAEQre~LrqFqEEV~eRA~rea-------e~aa~e~~~~~g~~~ 158 (212)
.+.|+|..= -++ +.|.++.|++|+++++++.+.++ .++..+.|++....+
T Consensus 52 G~~d~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~n~~~~ 110 (219)
T 3oe2_A 52 GLKQAYQGKPLALKQERIDQILREHDAAIAQAETAGTDAPTEAALKAERTFMAGEKAKP 110 (219)
T ss_dssp -----------------------------------CCCCCHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344444432 133 45677888999998887754332 234455565544433
No 125
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=26.73 E-value=49 Score=28.05 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 028159 101 ALNERIESAVGEFLSTVGRLQAEQQKQVQEFQE 133 (212)
Q Consensus 101 vL~ERlEsavtd~LSevGKfdAEQre~LrqFqE 133 (212)
.+.+++++.+.+.+-.+|++.++..+.|++|.+
T Consensus 116 ~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~ 148 (246)
T 4doi_A 116 QYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLE 148 (246)
T ss_dssp HHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 345666666667777889888888888888875
No 126
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=26.62 E-value=3.4e+02 Score=24.06 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=51.3
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHH---------------------------------------Hhhh-hc--cccHH
Q 028159 86 RTVLDAFFLGKAVAEALNERIESAVGE---------------------------------------FLST-VG--RLQAE 123 (212)
Q Consensus 86 npvL~AFFLGRAlAEvL~ERlEsavtd---------------------------------------~LSe-vG--KfdAE 123 (212)
...++.+.-|+.|.|.+++-|.+...+ +|.. +| .+.++
T Consensus 279 ~q~~Ek~~SG~yLgel~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~i~~~~~~~~~~~~~ 358 (451)
T 1bdg_A 279 KQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLTRYLTDVERDPAHLLYNTHYMLTDDLHVPVVEPI 358 (451)
T ss_dssp SCTTHHHHSHHHHHHHHHHHHHHHHHTTSSGGGCCCSGGGSTTCSCTTHHHHHTTCCTTCCHHHHHHHHHTSCCSSCCHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcccccccccchHhhcCCCccchHHHhhhhccCccchHHHHHHHHHHhCCCCCCHH
Confidence 457899999999999988877665431 1222 22 11478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028159 124 QQKQVQEFQEDVLERAKKAKEKAAREAMEVRG 155 (212)
Q Consensus 124 Qre~LrqFqEEV~eRA~reae~aa~e~~~~~g 155 (212)
.++.+|+..+.|++||-+....+.--++...+
T Consensus 359 d~~~~~~va~~V~~RaA~lla~~ia~i~~~~~ 390 (451)
T 1bdg_A 359 DNRIVRYACEMVVKRAAYLAGAGIACILRRIN 390 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999988887766666554
No 127
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=26.58 E-value=40 Score=27.59 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.4
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHH
Q 028159 116 TVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 116 evGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
+++|.++|.++.|.+|+++|+++-.
T Consensus 162 ef~rls~~~~~eid~~I~~~L~~~~ 186 (192)
T 1zx4_A 162 EFNRLSKELQEELDRMIGHILRKSL 186 (192)
T ss_dssp EEESCCHHHHHHHHHHHHHHHHHC-
T ss_pred eecCCCHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999997643
No 128
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=26.51 E-value=55 Score=24.41 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=9.8
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|.+
T Consensus 13 gIG~~ia~~l~~ 24 (235)
T 3l77_A 13 GIGEAIARALAR 24 (235)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999998865
No 129
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=26.49 E-value=1.1e+02 Score=22.03 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhh-hc-cccHHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLST-VG-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 105 RlEsavtd~LSe-vG-KfdAEQre~LrqFqEEV~e 137 (212)
-++++|..+|.+ +| .|++|.++.|..|...|..
T Consensus 101 ~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~ 135 (142)
T 3d1k_A 101 ILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVAL 135 (142)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 344555555554 33 6888888888888877653
No 130
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=26.40 E-value=75 Score=23.18 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=9.8
Q ss_pred ccHHHHHHHHHHHHHH
Q 028159 120 LQAEQQKQVQEFQEDV 135 (212)
Q Consensus 120 fdAEQre~LrqFqEEV 135 (212)
|++|.++.|..|...|
T Consensus 131 ~t~e~~~AW~k~~~~v 146 (150)
T 1sct_A 131 YSDDVAGAWAALVGVV 146 (150)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665544
No 131
>2w72_B Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7w_B* 1qi8_B* 1j7y_B* 1dxu_B* 1a0u_B* 1a0z_B* 1gli_B* 1j7s_B* 1o1l_B* 1o1n_B* 1y0t_B* 1y0w_B* 1o1o_B* 1ye2_B* 1y35_B* 1y22_B* 1ye0_B* 1dxt_B* 1y5f_B* 1ird_B* ...
Probab=26.28 E-value=1.2e+02 Score=22.03 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhh--ccccHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTV--GRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 103 ~ERlEsavtd~LSev--GKfdAEQre~LrqFqEEV~e 137 (212)
.+-++++|..+|.+. ..|++|.++.|..|...|..
T Consensus 103 f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 139 (146)
T 2w72_B 103 FRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVAN 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 344555555555553 37999999999999887754
No 132
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=26.25 E-value=50 Score=29.54 Aligned_cols=21 Identities=38% Similarity=0.207 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028159 133 EDVLERAKKAKEKAAREAMEV 153 (212)
Q Consensus 133 EEV~eRA~reae~aa~e~~~~ 153 (212)
++|...|+++-|+|||..|++
T Consensus 143 ~~v~~~A~~~FE~aar~fM~e 163 (331)
T 2atm_A 143 KXIELEASKRFEKYARFFMEE 163 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999985
No 133
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=26.25 E-value=49 Score=24.55 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=30.3
Q ss_pred HHHHHHHHH----HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 100 EALNERIES----AVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 100 EvL~ERlEs----avtd~LSevGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
..|.++|+. +|.+.+---|.-+.|..+++++|-+++.++.++.
T Consensus 104 ~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~~~~ 150 (159)
T 3fni_A 104 DPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWVTRD 150 (159)
T ss_dssp HHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 345555554 3344555568889999999999999998776543
No 134
>3pt8_B Hemoglobin III; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} PDB: 3pt7_B*
Probab=26.16 E-value=1.2e+02 Score=21.97 Aligned_cols=36 Identities=6% Similarity=0.049 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 103 ~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
.+-++++|..+|.++-.|+.|.++.|..|...|..-
T Consensus 108 f~~~~~~ll~~l~~~lg~t~e~~~AW~~~~~~va~~ 143 (152)
T 3pt8_B 108 LRDGYGTLLRYLEDHCHVEGSTKNAWEDFIAYICRV 143 (152)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 444555666666554229999999999998877543
No 135
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=26.03 E-value=61 Score=25.57 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=10.3
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 36 GIG~~ia~~la~~ 48 (281)
T 3v2h_A 36 GIGLAIARTLAKA 48 (281)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 5899999988653
No 136
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=25.97 E-value=90 Score=24.83 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHH------------HHHHHHHHhhhhcc-----ccHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNER------------IESAVGEFLSTVGR-----LQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 94 LGRAlAEvL~ER------------lEsavtd~LSevGK-----fdAEQre~LrqFqEEV~e 137 (212)
+|+|+|+.|.++ .++.+.+...+.|+ .|--..+.++++.+++.+
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 45 IAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 888888887543 33344444444342 344455566666666544
No 137
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=25.88 E-value=57 Score=27.09 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=28.7
Q ss_pred HHHHhhhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028159 110 VGEFLSTV-GRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGLV 157 (212)
Q Consensus 110 vtd~LSev-GKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~~~g~~ 157 (212)
+.++|..| |+|+.|+-..| ..+|... .++.+.+|++.|++.||+
T Consensus 238 ~~~~L~~l~~~lt~~~m~~l---n~~v~~~-~~~~~~vA~~wL~~~gl~ 282 (284)
T 3r6u_A 238 LEGIIKKMLGKIDTATMQEL---NYEVDGN-LKEPSVVAKEYLEKHRYF 282 (284)
T ss_dssp HHHHHHTTTTCCCHHHHHHH---HHHHHTS-CCCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHccCCHHHHHHH---HHHHHhC-CCCHHHHHHHHHHHcCCc
Confidence 44555555 67887764433 4444421 346778999999999987
No 138
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=25.88 E-value=94 Score=22.44 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcC
Q 028159 138 RAKKAKEKAAREAMEVRGLVPK 159 (212)
Q Consensus 138 RA~reae~aa~e~~~~~g~~~k 159 (212)
.|+++|.++|.+.|...+.+.+
T Consensus 60 ~Aeq~AA~~AL~~L~~~~~~~~ 81 (99)
T 1whq_A 60 DAQSNAARDFVNYLVRINEVKS 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHHHHHHHHhhCCCCc
Confidence 4677777788888888888765
No 139
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=25.87 E-value=84 Score=24.15 Aligned_cols=13 Identities=46% Similarity=0.508 Sum_probs=10.6
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 21 gIG~~ia~~l~~~ 33 (261)
T 2wyu_A 21 SLGFAIAAKLKEA 33 (261)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHC
Confidence 6899999988764
No 140
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=25.74 E-value=63 Score=25.14 Aligned_cols=12 Identities=25% Similarity=0.146 Sum_probs=9.3
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 26 gIG~a~a~~la~ 37 (280)
T 3pgx_A 26 GQGRSHAVRLAA 37 (280)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 588888888754
No 141
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina arenicola} SCOP: a.1.1.2
Probab=25.67 E-value=1e+02 Score=22.42 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 103 ~ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~ 136 (212)
.+-++++|..+|.+. | .|++|.++.|+.|...|.
T Consensus 115 f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~ 150 (158)
T 1hlb_A 115 YNLFAKVLMEALQAELGSDFNEKTRDAWAKAFSVVQ 150 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 334444455555443 3 677787777777777664
No 142
>2r80_B Hemoglobin subunit beta; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3dhr_B* 3mju_B* 1faw_B* 3k8b_B* 2qmb_B* 3eok_B* 1a4f_B* 1c40_B* 1hv4_B* 2zfb_B* 3mjp_B* 1hbr_B* 3fs4_B* 3a59_B* 1wmu_B* 1v75_B* 2z6n_B* 3at5_B* 3at6_B*
Probab=25.51 E-value=1.3e+02 Score=21.90 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 104 ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~e 137 (212)
+-++++|..+|.+. | .|++|.++.|..|...|..
T Consensus 104 ~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~va~ 139 (146)
T 2r80_B 104 RLLGDILVIILAAHFGKDFTPECQAAWQKLVRVVAH 139 (146)
T ss_dssp HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 34444444444442 3 6888888888888876643
No 143
>2vyw_A Hemoglobin; trematode, oxygen binding; HET: HEM; 1.8A {Fasciola hepatica}
Probab=25.46 E-value=94 Score=22.94 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLSTVGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 105 RlEsavtd~LSevGKfdAEQre~LrqFqEEV~ 136 (212)
-+++.|..+|.+. .|.+|.++.|..|...|.
T Consensus 111 ~~~~~Ll~~l~~~-~~t~e~~~AW~k~~~~va 141 (148)
T 2vyw_A 111 GAAPIFIKFFQGL-LKKQEDKDAIEKFLLHVM 141 (148)
T ss_dssp HTHHHHHHHHHHH-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHH
Confidence 3444455555555 566777777766666554
No 144
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=25.40 E-value=1.3e+02 Score=21.87 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 104 ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~e 137 (212)
+-++++|..+|.+. | .|++|.++.|..|...|..
T Consensus 101 ~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 136 (143)
T 1xq5_A 101 KILSHCILVLLAVKFPKDFTPEVHISYDKFFSALAR 136 (143)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 34444555555443 3 6888888888888776643
No 145
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: d.127.1.1
Probab=25.32 E-value=1.4e+02 Score=23.82 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCCC
Q 028159 141 KAKEKAAREAMEVRGLV 157 (212)
Q Consensus 141 reae~aa~e~~~~~g~~ 157 (212)
.+..+++++++++.|+-
T Consensus 157 ~~v~~~~~~~~~~~G~~ 173 (262)
T 1o0x_A 157 GDVSHCIQETVESVGFN 173 (262)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 35667788888888885
No 146
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=25.30 E-value=53 Score=29.67 Aligned_cols=21 Identities=33% Similarity=0.256 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028159 133 EDVLERAKKAKEKAAREAMEV 153 (212)
Q Consensus 133 EEV~eRA~reae~aa~e~~~~ 153 (212)
++|...|+++-|+|||..|++
T Consensus 147 ~~v~~~A~~~FE~aAr~FM~e 167 (350)
T 1fcq_A 147 QRVEQEAKRRFEKYGQLFMEE 167 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999985
No 147
>3d1k_B Hemoglobin subunit beta-1/2; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 1t1n_B* 1la6_B* 3nfe_B* 3ng6_B* 2h8f_B* 1pbx_B* 1s5x_B* 1s5y_B* 1hbh_B* 2h8d_B* 2peg_B* 3gkv_B* 3gqg_B*
Probab=25.29 E-value=1.3e+02 Score=22.04 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHHH
Q 028159 106 IESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 106 lEsavtd~LSev-G-KfdAEQre~LrqFqEEV~e 137 (212)
++++|..+|.+. | .|++|.++.|..|...|..
T Consensus 106 ~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T 3d1k_B 106 LSDCITIVLAAKMGHAFTAETQGAFQKFLAAVVS 139 (146)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 444444444442 3 5888888888888876643
No 148
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=25.15 E-value=2.4e+02 Score=22.44 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=14.5
Q ss_pred cccHHHHHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA 139 (212)
.+++|.++.+++..+.|.+.-
T Consensus 264 ~~~~e~~~~~~~~~~~v~~~~ 284 (301)
T 2pfy_A 264 PLPPQLAKELQAIGATMVSDW 284 (301)
T ss_dssp ECCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 467777777777777776553
No 149
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=24.98 E-value=94 Score=24.60 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=10.8
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 58 GIG~aia~~la~~ 70 (291)
T 3ijr_A 58 GIGRAVSIAFAKE 70 (291)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 6999999998764
No 150
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=24.98 E-value=1.7e+02 Score=24.88 Aligned_cols=43 Identities=5% Similarity=0.145 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccccHHHH----HHHHHHHHHHHHHHHH
Q 028159 99 AEALNERIESAVGEFLSTVGRLQAEQQ----KQVQEFQEDVLERAKK 141 (212)
Q Consensus 99 AEvL~ERlEsavtd~LSevGKfdAEQr----e~LrqFqEEV~eRA~r 141 (212)
++.+.+|.|.+...+..|+-+|+.|.. +.|++|.+.=+.-+++
T Consensus 305 ~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~ 351 (366)
T 3dyt_A 305 KQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYET 351 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999987643 4445555544444443
No 151
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=24.98 E-value=1.3e+02 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=14.0
Q ss_pred cccHHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~ 136 (212)
.|.+|-++.|..|...|.
T Consensus 111 ~~t~e~~~AW~k~~~~va 128 (136)
T 1gcv_B 111 CFTPHIQGIWDKFFEVVI 128 (136)
T ss_dssp GSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 588888888888887664
No 152
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=24.88 E-value=1.4e+02 Score=21.00 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 028159 98 VAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQE 133 (212)
Q Consensus 98 lAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqE 133 (212)
+-+.-.++.-+.+.++|.++| ++.|.++.|.+..+
T Consensus 78 I~~~~f~~wl~~~~~al~e~~-~~~~~~~~~~~~~~ 112 (123)
T 2bmm_A 78 IGAEERDRWLTHMRAAVDDLA-LPAHLEQQLWEYLV 112 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 555667777777888888887 77777666655443
No 153
>3imo_A Integron cassette protein; novel, integron protein, argentinean O139 strain, unknown function; 1.80A {Vibrio cholerae O139}
Probab=24.86 E-value=43 Score=27.03 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028159 126 KQVQEFQEDVLERAKKAKE 144 (212)
Q Consensus 126 e~LrqFqEEV~eRA~reae 144 (212)
+.|++|++.||.||+--+.
T Consensus 29 ~~L~~Ya~gVm~rA~HHa~ 47 (133)
T 3imo_A 29 NILSQYISGVMARADHHAG 47 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 5689999999999997544
No 154
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=24.86 E-value=88 Score=23.26 Aligned_cols=13 Identities=31% Similarity=0.186 Sum_probs=10.3
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|.++
T Consensus 13 giG~~~a~~l~~~ 25 (250)
T 2cfc_A 13 GNGLAIATRFLAR 25 (250)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHC
Confidence 6899999988653
No 155
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=24.77 E-value=38 Score=21.48 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028159 124 QQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 124 Qre~LrqFqEEV~eRA~re 142 (212)
.|++||.|-..+-|.-++-
T Consensus 2 lrkrlrkfrnkikeklkki 20 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKI 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3788888888777665543
No 156
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=24.60 E-value=1.3e+02 Score=22.02 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHH
Q 028159 104 ERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 104 ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~ 136 (212)
+-++++|..+|.+. | .|++|.++.|..|...|.
T Consensus 101 ~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va 135 (143)
T 1out_A 101 KILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVS 135 (143)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHH
Confidence 34455555555543 3 688888888888887664
No 157
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=24.43 E-value=67 Score=27.09 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=26.3
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH-HHHHHHHHHHH
Q 028159 85 SRTVLDAFFLGKAVAEALNERIESAVGEFLSTVGRLQAEQQKQ-VQEFQEDVLER 138 (212)
Q Consensus 85 SnpvL~AFFLGRAlAEvL~ERlEsavtd~LSevGKfdAEQre~-LrqFqEEV~eR 138 (212)
+=|+|.|.=..+ +.+++.+.+++..|.+|..+.++. |.++.+-|++|
T Consensus 237 T~p~l~~l~~a~-------~~a~~~~~~A~~~L~~l~~~~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 237 TLVXXVGIQXAR-------EMADXYYEEVLXGIESEGLFRTLFLLXELXQMVEER 284 (284)
T ss_dssp CHHHHHCHHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHcC
Confidence 446666533333 344444444444444444345777 88888887764
No 158
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=24.34 E-value=1.9e+02 Score=22.50 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=13.2
Q ss_pred cccHHHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~e 137 (212)
-+.+|||++|.+..++=++
T Consensus 118 vLTPEQk~ql~e~~~~r~~ 136 (145)
T 3itf_A 118 LLTPEQQAVLNEKHQQRME 136 (145)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHH
Confidence 3678888888877665443
No 159
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=24.33 E-value=1.3e+02 Score=24.70 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCC
Q 028159 119 RLQAEQQKQVQEFQEDVLERAK---KAKEKAAREAMEVRGL 156 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA~---reae~aa~e~~~~~g~ 156 (212)
++++|+|+.|++-.+|...... .+.+..+.+.|+++|.
T Consensus 256 ~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~ 296 (365)
T 2hzl_A 256 GLTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLVAQGT 296 (365)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCC
Confidence 4677888888887666654432 2344556777888885
No 160
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=24.30 E-value=70 Score=27.81 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHHHhhhhccccHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 028159 108 SAVGEFLSTVGRLQAEQQKQ----VQEFQEDVLERAKKAKEKAARE 149 (212)
Q Consensus 108 savtd~LSevGKfdAEQre~----LrqFqEEV~eRA~reae~aa~e 149 (212)
+.|.-+++.|-.=+.+.++. |+.|.+-|..||+.-.+.++.+
T Consensus 119 ~~v~~FF~ki~~~~~~~~~~F~ddV~~~~~RIk~Ra~~~~~e~~~e 164 (265)
T 1us7_B 119 ACFRQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKE 164 (265)
T ss_dssp GTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666664334444444 7889999999999665555443
No 161
>1v4x_B Hemoglobin beta chain; oxygen transport, heme, respiratory protein, erythrocyte, ROOT effect, SWIM bladder, oxygen storage/transport complex; HET: HEM; 1.60A {Thunnus thynnus} SCOP: a.1.1.2 PDB: 1v4u_B* 1v4w_B*
Probab=24.27 E-value=1.4e+02 Score=21.87 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 103 ~ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~e 137 (212)
.+-++++|..+|.+. | .|++|.++.|..|...|..
T Consensus 103 f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T 1v4x_B 103 FRILGDCLTVVIAANLGDAFTVETQCAFQKFLAVVVF 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 344555555555553 3 6999999999999887753
No 162
>1hlm_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.90A {Caudina arenicola} SCOP: a.1.1.2
Probab=24.27 E-value=67 Score=23.41 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHH
Q 028159 101 ALNERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 101 vL~ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~ 136 (212)
.-.+-++++|..+|.++ | .|+.|.++.|..|...|.
T Consensus 113 ~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~v~ 150 (159)
T 1hlm_A 113 KNYDLFGKVLMEAIKAELGVGFTKQVHDAWAKTFAIVQ 150 (159)
T ss_dssp HHHHHHHHHHHHHTTSSCSSCCCTTHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 44566777788888775 5 688888888888887764
No 163
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=24.25 E-value=2.9e+02 Score=23.59 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028159 128 VQEFQEDVLERAKKAKEKAAREAMEVRGLV 157 (212)
Q Consensus 128 LrqFqEEV~eRA~reae~aa~e~~~~~g~~ 157 (212)
|.++.++=-+||+.-+++--.++-+.-|+.
T Consensus 299 l~~il~~G~~~a~~~a~~~~~~v~~~~g~~ 328 (337)
T 2el7_A 299 VMDALLEGAKRARAVAQATMEEVREKVGLL 328 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333334455555555555555566763
No 164
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=24.23 E-value=72 Score=24.17 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=10.7
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 27 giG~~~a~~l~~~ 39 (278)
T 2bgk_A 27 GIGETTAKLFVRY 39 (278)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 7899999988753
No 165
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A* 2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A* 2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A* 3mat_A* 1yvm_A* 2mat_A ...
Probab=24.20 E-value=1.5e+02 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCCC
Q 028159 141 KAKEKAAREAMEVRGLV 157 (212)
Q Consensus 141 reae~aa~e~~~~~g~~ 157 (212)
.+..+++++++++.|+-
T Consensus 146 ~~v~~~~~~~~~~~G~~ 162 (263)
T 2gg2_A 146 REIGAAIQKFVEAEGFS 162 (263)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 34567888888888885
No 166
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=24.18 E-value=2.2e+02 Score=25.30 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Q 028159 102 LNERIESAVGEFLSTVGRLQAEQQK--QVQEFQEDVLERAKKAKEKAAREAMEVRGLVPK 159 (212)
Q Consensus 102 L~ERlEsavtd~LSevGKfdAEQre--~LrqFqEEV~eRA~reae~aa~e~~~~~g~~~k 159 (212)
|...|-++|.+.|..+-+-=+|..+ .|.+-.++=-+||+..+++--.++-+.-|+.+.
T Consensus 302 lK~~lae~l~~~l~pirer~~~~~~~~~l~~il~~Ga~kA~~~A~~tl~~v~~~~g~~~~ 361 (388)
T 3prh_A 302 FKGDLAEVVVNALKPIQDRYYELIESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4455555555555554322222111 133333333344444444444455566788763
No 167
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=24.18 E-value=69 Score=25.31 Aligned_cols=12 Identities=50% Similarity=0.487 Sum_probs=10.1
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 39 GIG~aia~~la~ 50 (272)
T 4dyv_A 39 GVGRAVAVALAG 50 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999998865
No 168
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=23.84 E-value=1.3e+02 Score=21.92 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 105 RlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~ 136 (212)
-++++|..+|.+. | .|++|.++.|..|...|.
T Consensus 103 ~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va 136 (144)
T 1spg_A 103 ILAHNIILVISMYFPGDFTPEVHLSVDKFLACLA 136 (144)
T ss_dssp HHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHH
Confidence 3444444444442 3 577777777777776654
No 169
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=23.76 E-value=76 Score=24.76 Aligned_cols=44 Identities=7% Similarity=0.228 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHH-----------HHHHHHHHhhhhcc-----ccHHHHHHHHHHHHHHHH
Q 028159 94 LGKAVAEALNER-----------IESAVGEFLSTVGR-----LQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 94 LGRAlAEvL~ER-----------lEsavtd~LSevGK-----fdAEQre~LrqFqEEV~e 137 (212)
+|+++|+.|-++ +++.+.+...+.++ .|--..+.++++.+++.+
T Consensus 40 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (280)
T 3nrc_A 40 IAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGK 99 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHH
Confidence 899999988654 22334443333332 344555666777666644
No 170
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.72 E-value=59 Score=28.92 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=13.8
Q ss_pred HHHHhhHHHHHHHHHH----HHHHHHHHhhh---------------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 90 DAFFLGKAVAEALNER----IESAVGEFLST---------------VGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREA 150 (212)
Q Consensus 90 ~AFFLGRAlAEvL~ER----lEsavtd~LSe---------------vGKfdAEQre~LrqFqEEV~eRA~reae~aa~e~ 150 (212)
..|==+..|++.|..- +|+.+-++|-. =+.|+.|-++.|..-=--|..++++..|+.|++.
T Consensus 413 ~Gy~Ga~~l~~~i~n~l~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~W~~~a~~~l~~~p~~~r~~~r~~~e~~a~~~ 492 (511)
T 2xdq_B 413 LGYEGTNQLVDLIYNSFTLGMEDHLLEIFGGHDTKAVIHKGLSADSDLTWTAAGLAELNKIPGFVRGKVKRNTEKFAREQ 492 (511)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHhccccchhhccCCcCcCCCCCCCHHHHHHHhhCCHHhHHHHHHHHHHHHHHc
Confidence 3343334444444444 56666666644 2469999998887766667778999999988874
No 171
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=23.46 E-value=3e+02 Score=24.04 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=14.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHhcCCCcC
Q 028159 131 FQEDVLER----AKKAKEKAAREAMEVRGLVPK 159 (212)
Q Consensus 131 FqEEV~eR----A~reae~aa~e~~~~~g~~~k 159 (212)
..++|+.. |+.-+++--.++-+.-|+++.
T Consensus 313 ~l~~il~~G~~kA~~~A~~tl~~v~~~~g~~~~ 345 (346)
T 3n9i_A 313 LLQDVMREGAAKARARAQVTLAKVYEAIGFVAQ 345 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44555543 333333333445556688764
No 172
>2bk9_A CG9734-PA; oxygen transport, drosophila melanogaster hemoglobin, heme hexacoordination, insect hemoglobin, protein cavities; HET: HEM CXS; 1.2A {Drosophila melanogaster} PDB: 2g3h_A*
Probab=23.34 E-value=1.4e+02 Score=21.67 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=17.4
Q ss_pred HHHHHHHHhhh-hccccHHHHHHHHHHHHHHH
Q 028159 106 IESAVGEFLST-VGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 106 lEsavtd~LSe-vGKfdAEQre~LrqFqEEV~ 136 (212)
++++|..+|.+ +| |+.|.++.|..|...|.
T Consensus 109 ~~~~Ll~~l~~~lg-~t~e~~~AW~~~~~~v~ 139 (153)
T 2bk9_A 109 LKGVILDVLTAASS-LDESQAATWAKLVDHVY 139 (153)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 33444444443 24 77777777777776664
No 173
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=23.16 E-value=1.4e+02 Score=21.84 Aligned_cols=18 Identities=6% Similarity=0.003 Sum_probs=15.0
Q ss_pred cccHHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~ 136 (212)
.|++|.++.|++|...|.
T Consensus 132 ~~t~e~~~AW~~~~~~va 149 (154)
T 4b4y_A 132 KWSEEKKEAWLKAYGIIT 149 (154)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 589999999998887664
No 174
>2aa1_B Hemoglobin beta-C chain; ROOT effect, cooperativity, antarctic FISH, oxygen storage/transport complex; HET: HEM; 1.80A {Trematomus newnesi} SCOP: a.1.1.2 PDB: 1xq5_B* 3bj1_B* 3bj2_B* 3bj3_B*
Probab=23.04 E-value=1.5e+02 Score=21.74 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhh-c-cccHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTV-G-RLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 103 ~ERlEsavtd~LSev-G-KfdAEQre~LrqFqEEV~e 137 (212)
.+-++++|..+|.+. | .|++|.++.|..|...|..
T Consensus 103 f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~ 139 (146)
T 2aa1_B 103 FKLLADCLTIVVAARFGSAFTGEVQAAFQKFMAVVVS 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHH
Confidence 344555555555553 3 6999999999998887653
No 175
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=23.02 E-value=1.5e+02 Score=23.58 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 028159 96 KAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAK 143 (212)
Q Consensus 96 RAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~rea 143 (212)
|+=.+.|.+|++.+....=..|-..+.|. +.|+++|+.+...--
T Consensus 56 K~KSp~L~~K~~~l~~~lk~Ki~~L~Pea----k~Fv~kli~~~r~l~ 99 (140)
T 2w9y_A 56 SKKHPELGKRLATVLEGNKKRLDGLSPAA----VEYAKKLIHMVTTTL 99 (140)
T ss_dssp HHHCHHHHHHHHHHHHHHHHTTTTCCHHH----HHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHH
Confidence 45567899999999888889999999999 789999998876653
No 176
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=23.00 E-value=1.4e+02 Score=21.88 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhh--ccccHHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLSTV--GRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 103 ~ERlEsavtd~LSev--GKfdAEQre~LrqFqEEV~eR 138 (212)
.+-++++|..+|.+. ..|++|.++.+..|...|..-
T Consensus 104 f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~ 141 (153)
T 1lhs_A 104 LEFICEIIVKVIAEKHPSDFGADSQAAMKKALELFRND 141 (153)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHH
Confidence 344555666666553 379999999999999877653
No 177
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=22.93 E-value=71 Score=24.79 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=9.5
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 22 GIG~a~a~~la~~ 34 (277)
T 3tsc_A 22 GQGRAHAVRMAAE 34 (277)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 5788888877553
No 178
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=22.85 E-value=1.2e+02 Score=23.21 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=9.3
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 15 gIG~~ia~~l~~ 26 (260)
T 1x1t_A 15 GIGLGIATALAA 26 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688888888765
No 179
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A
Probab=22.79 E-value=1.6e+02 Score=23.30 Aligned_cols=18 Identities=11% Similarity=-0.106 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 028159 141 KAKEKAAREAMEVRGLVP 158 (212)
Q Consensus 141 reae~aa~e~~~~~g~~~ 158 (212)
.+..+++++++++.|+-.
T Consensus 148 ~~i~~~~~~~~~~~G~~~ 165 (262)
T 3mx6_A 148 GDIGYAIQSYAEKHNYSV 165 (262)
T ss_dssp HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 345677888888888853
No 180
>2wy4_A Single domain haemoglobin; heme, transport, oxygen transport; HET: HEM; 1.35A {Campylobacter jejuni}
Probab=22.77 E-value=2e+02 Score=20.13 Aligned_cols=34 Identities=3% Similarity=-0.056 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhh-hccccHHHHHHHHHHHHHHHH
Q 028159 103 NERIESAVGEFLST-VGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 103 ~ERlEsavtd~LSe-vGKfdAEQre~LrqFqEEV~e 137 (212)
.+.+.+.|..+|.+ +|.+ +|.++.|..+...|..
T Consensus 94 f~~~~~~ll~~l~~~lg~~-~e~~~AW~~~~~~ia~ 128 (140)
T 2wy4_A 94 YPIVGACLLKAIKNLLNPD-EATLKAWEVAYGKIAK 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHH
Confidence 34555666666666 6766 7888888887776543
No 181
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=22.69 E-value=1.1e+02 Score=23.74 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=11.0
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+|+|+.|-++
T Consensus 34 gIG~aia~~L~~~ 46 (288)
T 2x9g_A 34 RIGRAIAVKLHQT 46 (288)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 7999999998754
No 182
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=22.43 E-value=1.4e+02 Score=22.88 Aligned_cols=12 Identities=33% Similarity=0.182 Sum_probs=8.4
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 24 gIG~~ia~~l~~ 35 (278)
T 3sx2_A 24 GQGRAHAVRLAA 35 (278)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 577777777744
No 183
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.2 PDB: 1or6_A*
Probab=22.42 E-value=1.9e+02 Score=21.84 Aligned_cols=53 Identities=13% Similarity=0.282 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 96 KAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAM 151 (212)
Q Consensus 96 RAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~ 151 (212)
|+++.+|.+.++.+|..+-..|..+ .|-+.-+.. .+.++|.+....+.+.+++
T Consensus 52 ~~~~p~l~~~~~~ivd~FY~~l~~~-pe~~~~f~~--~~~~~rLk~~q~~~~~~l~ 104 (178)
T 1or4_A 52 EQLQPLIQENIVNIVDAFYKNLDHE-SSLMDIIND--HSSVDRLKQTLKRHIQEMF 104 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHH--HCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHhCC--chHHHHHHHHHHHHHHHHh
Confidence 6788889999999999999888855 565544432 2346777666666655544
No 184
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C; 1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB: 1qxw_A* 1qxz_A*
Probab=22.34 E-value=1.4e+02 Score=23.22 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 028159 141 KAKEKAAREAMEVRGLVP 158 (212)
Q Consensus 141 reae~aa~e~~~~~g~~~ 158 (212)
.+..+++++++++.|+-.
T Consensus 144 ~~i~~~~~~~~~~~g~~~ 161 (252)
T 1qxy_A 144 SNIGKAVHNTARQNDLKV 161 (252)
T ss_dssp HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCCEe
Confidence 345667777888888753
No 185
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=22.34 E-value=77 Score=26.67 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=15.9
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHH
Q 028159 116 TVGRLQAEQQKQVQEFQEDVLERAKKAK 143 (212)
Q Consensus 116 evGKfdAEQre~LrqFqEEV~eRA~rea 143 (212)
.||+|..|+++.|.+ ++++|-.+.
T Consensus 179 VL~~fs~~E~~~l~~----~i~~a~~av 202 (222)
T 3v2i_A 179 VLKPPRKEEQDVIDA----AIERALAVM 202 (222)
T ss_dssp TTSCCCHHHHHHHHH----HHHHHHHHH
T ss_pred hccCCCHHHHHHHHH----HHHHHHHHH
Confidence 378999999887754 455554443
No 186
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=22.23 E-value=1.4e+02 Score=23.66 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=9.9
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+|+|+.|-++
T Consensus 39 GIG~aia~~la~~ 51 (299)
T 3t7c_A 39 GQGRSHAITLARE 51 (299)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 6888988888543
No 187
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=22.06 E-value=55 Score=27.59 Aligned_cols=14 Identities=7% Similarity=0.197 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 028159 97 AVAEALNERIESAV 110 (212)
Q Consensus 97 AlAEvL~ERlEsav 110 (212)
.||..|.++||+.+
T Consensus 172 ~lA~~ir~~ie~~l 185 (274)
T 1kyq_A 172 RFGALVRDEIRNLF 185 (274)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68888999999988
No 188
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=22.00 E-value=1.2e+02 Score=25.36 Aligned_cols=38 Identities=11% Similarity=0.262 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCC
Q 028159 119 RLQAEQQKQVQEFQEDVLERAK---KAKEKAAREAMEVRGL 156 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA~---reae~aa~e~~~~~g~ 156 (212)
++++|+|+.|++=.+|...... .+.+..+.+.|++.|.
T Consensus 239 ~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv 279 (328)
T 3u65_B 239 RIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGV 279 (328)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4456666666665555544332 2333445566666664
No 189
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=21.95 E-value=2.7e+02 Score=23.10 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Q 028159 99 AEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAK 140 (212)
Q Consensus 99 AEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~ 140 (212)
|.-|...+.+-+..+...-..--.|+.+.+++|..++.++-.
T Consensus 30 ~~~l~k~i~sFi~~f~~~~~~~~~e~~~~v~~f~~~~~~~l~ 71 (274)
T 2ot3_A 30 GQEIYKQTKLFLEGMHYKRDLSIEEQSECAQDFYHNVAERMQ 71 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334444554444444332222345666778888777766654
No 190
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=21.92 E-value=88 Score=24.01 Aligned_cols=12 Identities=42% Similarity=0.445 Sum_probs=9.8
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 19 gIG~~ia~~l~~ 30 (259)
T 4e6p_A 19 GIGRAFAEAYVR 30 (259)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999988865
No 191
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=21.80 E-value=86 Score=23.97 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=10.2
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 13 gIG~~ia~~l~~~ 25 (247)
T 3dii_A 13 GIGKQICLDFLEA 25 (247)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 6899999888653
No 192
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=21.70 E-value=89 Score=23.18 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=10.7
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
|+|+++|+.|.+
T Consensus 15 gIG~~~a~~L~~ 26 (276)
T 1wma_A 15 GIGLAIVRDLCR 26 (276)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999877
No 193
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=21.54 E-value=1.5e+02 Score=21.01 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHH--HHHHHhhhhccccHHHHHHHHHHHHHHH
Q 028159 97 AVAEALNERIES--AVGEFLSTVGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 97 AlAEvL~ERlEs--avtd~LSevGKfdAEQre~LrqFqEEV~ 136 (212)
+|++.+++||.. .|..++... . ..++++.+.+|..+++
T Consensus 15 ~lv~~FY~~v~~Dp~l~~~F~~~-d-~~~~~~~l~~Fl~~~~ 54 (123)
T 2ksc_A 15 LAVEKFYGKVLADERVNRFFVNT-D-MAKQKQHQKDFMTYAF 54 (123)
T ss_dssp HHHHHHHHHHHHCHHHHTGGGSS-C-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCHHHHHhcCCC-C-HHHHHHHHHHHHHHHh
Confidence 456666666653 455555433 1 3477777888877765
No 194
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=21.54 E-value=86 Score=23.96 Aligned_cols=13 Identities=23% Similarity=0.135 Sum_probs=10.7
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|.++
T Consensus 17 giG~~ia~~l~~~ 29 (253)
T 1hxh_A 17 GVGLEVVKLLLGE 29 (253)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 6899999988754
No 195
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=21.53 E-value=1.4e+02 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHH
Q 028159 100 EALNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLE 137 (212)
Q Consensus 100 EvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~e 137 (212)
+.|.+||+.-|.++=..|+-+-.|.|.+|.++.+|+.+
T Consensus 146 eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~ 183 (243)
T 2a01_A 146 EEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKE 183 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666665
No 196
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=21.49 E-value=91 Score=22.65 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 122 AEQQKQVQEFQEDVLERAKKAKEKAAR 148 (212)
Q Consensus 122 AEQre~LrqFqEEV~eRA~reae~aa~ 148 (212)
.+.++-|.+|++||++.|..-++.|-|
T Consensus 53 ~~l~~vle~~~~~V~~dA~~~a~hakR 79 (103)
T 1tzy_D 53 EETRGVLKVFLENVIRDAVTYTEHAKR 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456777889999999988887765533
No 197
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=21.48 E-value=87 Score=24.21 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=10.0
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 18 gIG~~ia~~l~~ 29 (260)
T 1nff_A 18 GMGASHVRAMVA 29 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999998865
No 198
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}
Probab=21.46 E-value=89 Score=23.99 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=10.1
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 13 GIG~aia~~l~~~ 25 (254)
T 3kzv_A 13 GIGKSIVDVLFSL 25 (254)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc
Confidence 5889998888654
No 199
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=21.46 E-value=1e+02 Score=22.59 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=25.6
Q ss_pred HHHHHHHHHHH---HHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 98 VAEALNERIES---AVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEK 145 (212)
Q Consensus 98 lAEvL~ERlEs---avtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~ 145 (212)
+++.|.||++. .+.++|.++-. .++|++.|+.=.+-
T Consensus 3 ~~~~L~Eki~kYi~~l~eaL~~i~~------------a~~~l~mA~~Y~~D 41 (86)
T 2oo2_A 3 LEEELRRETLKWLERIEERVKEIEG------------DEGFMRNIEAYISD 41 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGEEE------------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHH
Confidence 56778888876 67788888775 46777777665444
No 200
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=21.44 E-value=1.4e+02 Score=20.72 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Q 028159 95 GKAVAEALNERIESAVGEFLSTVGRLQAEQQKQVQEFQED 134 (212)
Q Consensus 95 GRAlAEvL~ERlEsavtd~LSevGKfdAEQre~LrqFqEE 134 (212)
|+.+++.+.++. ..+...+..+| ++.|..+.+....+.
T Consensus 74 g~~~~~~~~~~~-~~~~~~~~~~~-~~~~e~~~~~~~l~~ 111 (139)
T 2x4h_A 74 GTRSINYLIKAH-RVIEILLVNIG-IDKQTACEYSKQFDY 111 (139)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHT-CCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHH-HHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence 556666655543 34455555444 566665554444333
No 201
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=21.39 E-value=87 Score=24.54 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.1
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 38 gIG~aia~~la~ 49 (266)
T 3grp_A 38 GIGEAIARCFHA 49 (266)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999998865
No 202
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=21.35 E-value=77 Score=25.07 Aligned_cols=12 Identities=42% Similarity=0.459 Sum_probs=10.1
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 40 gIG~aia~~la~ 51 (277)
T 3gvc_A 40 GIGLAVARRLAD 51 (277)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 589999998865
No 203
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*
Probab=21.26 E-value=2.2e+02 Score=21.57 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 028159 97 AVAEALNERIESAVG 111 (212)
Q Consensus 97 AlAEvL~ERlEsavt 111 (212)
.+++.||+.|-+.++
T Consensus 28 ~vi~~Ln~~LA~~~~ 42 (167)
T 3ak8_A 28 ATVELLNRQVIQFID 42 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355556655555443
No 204
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=21.25 E-value=69 Score=29.65 Aligned_cols=21 Identities=29% Similarity=0.120 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028159 133 EDVLERAKKAKEKAAREAMEV 153 (212)
Q Consensus 133 EEV~eRA~reae~aa~e~~~~ 153 (212)
++|...|+++-|+|||..|++
T Consensus 146 ~~v~~~A~~~FE~aAr~FM~e 166 (424)
T 2pe4_A 146 PQVEAVAQDQFQGAARAWMAG 166 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999985
No 205
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=21.25 E-value=84 Score=26.09 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=14.9
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHH
Q 028159 117 VGRLQAEQQKQVQEFQEDVLERAKKA 142 (212)
Q Consensus 117 vGKfdAEQre~LrqFqEEV~eRA~re 142 (212)
||+|..|+++.|.+ ++++|-.+
T Consensus 164 L~~f~~~E~~~l~~----~i~~a~~a 185 (205)
T 1ryb_A 164 LQKFSSEERVQIDT----ALEQGVDA 185 (205)
T ss_dssp TSBCCHHHHHHHHH----HHHHHHHH
T ss_pred cCCCCHHHHHHHHH----HHHHHHHH
Confidence 78999999877654 45544433
No 206
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.24 E-value=2.7e+02 Score=21.04 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAR 148 (212)
Q Consensus 105 RlEsavtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~ 148 (212)
++.+-+-.+-+++-.+++|..+-..++.+|-..|.+.+.++...
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i 52 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 52 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445566688888888888888888887777666544
No 207
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=21.13 E-value=3.5e+02 Score=23.18 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=9.2
Q ss_pred CCCCchhhHH--HHHhh-HHH
Q 028159 81 GDGESRTVLD--AFFLG-KAV 98 (212)
Q Consensus 81 gd~eSnpvL~--AFFLG-RAl 98 (212)
++.|-+++++ .+|.+ ...
T Consensus 243 ~~p~~~~v~~~~~~f~~~~~~ 263 (340)
T 2g36_A 243 GNPENCPVWKYHQAFDISEEE 263 (340)
T ss_dssp CCGGGCHHHHHHHHTTCCHHH
T ss_pred CCCchhHHHHHHHHHCCCHhH
Confidence 5555556554 44553 444
No 208
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=21.12 E-value=1e+02 Score=22.50 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 122 AEQQKQVQEFQEDVLERAKKAKEKAA 147 (212)
Q Consensus 122 AEQre~LrqFqEEV~eRA~reae~aa 147 (212)
.+.++-|.+|++||++.|..-++.|-
T Consensus 53 ~~l~~vle~~~~~V~~dA~~~a~hak 78 (103)
T 2yfw_B 53 EEVRNVLKTFLESVIRDAVTYTEHAK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677888899999988887766553
No 209
>1ith_A Hemoglobin (cyano Met); oxygen transport; HET: HEM; 2.50A {Urechis caupo} SCOP: a.1.1.2
Probab=21.11 E-value=1.7e+02 Score=20.91 Aligned_cols=31 Identities=6% Similarity=0.073 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhh-hccccHHHHHHHHHHHHHHH
Q 028159 105 RIESAVGEFLST-VGRLQAEQQKQVQEFQEDVL 136 (212)
Q Consensus 105 RlEsavtd~LSe-vGKfdAEQre~LrqFqEEV~ 136 (212)
-+++++..+|.+ +| |+.|.++.|..|...|.
T Consensus 106 ~~~~~ll~~l~~~lg-~t~e~~~AW~~~~~~ia 137 (141)
T 1ith_A 106 QLLKLVGGVFQEEFS-ADPTTVAAWGDAAGVLV 137 (141)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 333444444433 34 66666666666666553
No 210
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=20.97 E-value=3.2e+02 Score=21.80 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=16.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHH
Q 028159 118 GRLQAEQQKQVQEFQEDVLERA 139 (212)
Q Consensus 118 GKfdAEQre~LrqFqEEV~eRA 139 (212)
=.+++|.++.+++..+.|.+.-
T Consensus 262 ~~~~~e~~~~~~~~~~~v~~~~ 283 (301)
T 2pfz_A 262 IAPTAELKSGLTEVGKRMLDDW 283 (301)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888887653
No 211
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=20.86 E-value=1.6e+02 Score=23.07 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=10.7
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+|+|+.|-++
T Consensus 38 GIG~aia~~la~~ 50 (267)
T 3u5t_A 38 GIGAAIAARLASD 50 (267)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 6899999988764
No 212
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=20.84 E-value=83 Score=26.04 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=9.3
Q ss_pred hhHHHHHHHHH
Q 028159 94 LGKAVAEALNE 104 (212)
Q Consensus 94 LGRAlAEvL~E 104 (212)
+|||+|+.|-+
T Consensus 41 IG~aiA~~la~ 51 (273)
T 4fgs_A 41 IGLAAAKRFVA 51 (273)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 79999998864
No 213
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=20.81 E-value=1.4e+02 Score=22.74 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=10.4
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+|+|+.|-++
T Consensus 23 gIG~aia~~l~~~ 35 (252)
T 3f1l_A 23 GIGREAAMTYARY 35 (252)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHC
Confidence 5899999988653
No 214
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.72 E-value=2.7e+02 Score=20.74 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 028159 120 LQAEQQKQVQEFQEDVLERAKKAKE 144 (212)
Q Consensus 120 fdAEQre~LrqFqEEV~eRA~reae 144 (212)
-+.+.++.|++-+.|-+.||+.=+.
T Consensus 57 ~~~~~k~~lr~K~~eYl~RAE~LK~ 81 (117)
T 2cpt_A 57 QGDKAKQSIRAKCTEYLDRAEKLKE 81 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999998765
No 215
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=20.71 E-value=1.4e+02 Score=24.57 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=23.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCC
Q 028159 119 RLQAEQQKQVQEFQEDVLERAKK----AKEKAAREAMEVRGLV 157 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV~eRA~r----eae~aa~e~~~~~g~~ 157 (212)
++++|+|+.|++=.+|....... +.+..+.+.|+++|..
T Consensus 240 ~L~~e~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~~l~~~Gv~ 282 (327)
T 2hpg_A 240 SLPKEYQKIIEEEMDKAGIEVSLKIMKELEEEYKQKCIEKGMA 282 (327)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 34567777777655554433322 3455667778888853
No 216
>3pt8_A Hemoglobin II; oxygen carrier, oxygen transport; HET: HEM; 1.76A {Lucina pectinata} SCOP: a.1.1.0 PDB: 3pi1_A* 2olp_A* 3pi3_A* 3pi4_A* 3pt7_A* 3pi2_A*
Probab=20.65 E-value=1.2e+02 Score=21.86 Aligned_cols=37 Identities=3% Similarity=-0.026 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 028159 102 LNERIESAVGEFLSTVGRLQAEQQKQVQEFQEDVLER 138 (212)
Q Consensus 102 L~ERlEsavtd~LSevGKfdAEQre~LrqFqEEV~eR 138 (212)
-.+-++++|..+|.+-..|+.|.++.|..|...|..-
T Consensus 107 ~f~~~~~~ll~~l~~g~~~t~e~~~AW~~~~~~va~~ 143 (152)
T 3pt8_A 107 DLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKT 143 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHH
Confidence 3455677777777773458899888888888776543
No 217
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus}
Probab=20.60 E-value=92 Score=25.79 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCCC
Q 028159 141 KAKEKAAREAMEVRGLV 157 (212)
Q Consensus 141 reae~aa~e~~~~~g~~ 157 (212)
.+..++|++++++.|+-
T Consensus 286 ~~i~~~~~~~~~~~g~~ 302 (377)
T 4fkc_A 286 EVVDATARGIISKYGYG 302 (377)
T ss_dssp HHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHHhccc
Confidence 45677889999999974
No 218
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=20.38 E-value=60 Score=26.54 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=36.6
Q ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CcCccccccccccc
Q 028159 110 VGEFLSTVGRLQAEQQKQVQEFQEDVLERAKKAKEKAAREAMEVRGL-----VPKSRTVNATPVSA 170 (212)
Q Consensus 110 vtd~LSevGKfdAEQre~LrqFqEEV~eRA~reae~aa~e~~~~~g~-----~~k~~t~~~~~~~~ 170 (212)
+.++|..| +|+.|+-..| .-+|.+ .++.+.+|++-|++.+. ++..++.+...++-
T Consensus 110 ~~~~L~~~-~lt~~~~~~l---~~~v~~--~~~~~~vA~~wl~~~~~~~~~W~~~~~~~~~~~I~i 169 (268)
T 2b4l_A 110 AAKLLSQF-KWTQDEMGEI---MIKVEE--GEKPAKVAAEYVNKHKDQIAEWTKGVQKVKGDKINL 169 (268)
T ss_dssp HHHHHHTC-CCCHHHHHHH---HHHHHT--TCCHHHHHHHHHHHCHHHHHHHTTTCCCCSSCEEEE
T ss_pred HHHHHHhc-CCCHHHHHHH---HHHHHc--CCCHHHHHHHHHHHCHHHHHHHhCccccccCcceEE
Confidence 66777777 9998875544 444443 45678999999998876 55555555444443
No 219
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=20.23 E-value=1.1e+02 Score=22.16 Aligned_cols=17 Identities=6% Similarity=0.005 Sum_probs=8.8
Q ss_pred cccHHHHHHHHHHHHHH
Q 028159 119 RLQAEQQKQVQEFQEDV 135 (212)
Q Consensus 119 KfdAEQre~LrqFqEEV 135 (212)
.|++|.++.|..|...|
T Consensus 131 ~~t~e~~~AW~~~~~~v 147 (151)
T 1sct_B 131 YFDEDTVAAWASLVAVV 147 (151)
T ss_dssp GCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 45555555555555443
No 220
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=20.16 E-value=1.7e+02 Score=22.30 Aligned_cols=13 Identities=31% Similarity=0.243 Sum_probs=10.2
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 21 gIG~~ia~~l~~~ 33 (287)
T 3pxx_A 21 GQGRSHAVKLAEE 33 (287)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHC
Confidence 5889998888654
No 221
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=20.12 E-value=1.3e+02 Score=23.65 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=10.2
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+|+|+.|-+
T Consensus 44 GIG~aia~~la~ 55 (281)
T 4dry_A 44 GVGRGIAQALSA 55 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999998865
No 222
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=20.10 E-value=1.6e+02 Score=23.63 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=10.2
Q ss_pred HhhHHHHHHHHHH
Q 028159 93 FLGKAVAEALNER 105 (212)
Q Consensus 93 FLGRAlAEvL~ER 105 (212)
++|+++|+.|-++
T Consensus 57 GIG~aia~~la~~ 69 (317)
T 3oec_A 57 GQGRTHAVRLAQD 69 (317)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 6899999988543
No 223
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=20.08 E-value=1.4e+02 Score=27.09 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=16.2
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHHhcCCCc
Q 028159 133 EDVLERAKK-----------AKEKAAREAMEVRGLVP 158 (212)
Q Consensus 133 EEV~eRA~r-----------eae~aa~e~~~~~g~~~ 158 (212)
++|.++|++ .+.+--.++|..+|++|
T Consensus 404 ~~v~~~a~~~~~~~~~aA~~~a~~rva~a~~~~G~~p 440 (440)
T 3aog_A 404 EAVWQVAQEKKIPLRTAAYVVAATRVLEARALRGLYP 440 (440)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 556666654 23333456888999886
No 224
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=20.03 E-value=1e+02 Score=23.62 Aligned_cols=12 Identities=58% Similarity=0.695 Sum_probs=9.8
Q ss_pred HhhHHHHHHHHH
Q 028159 93 FLGKAVAEALNE 104 (212)
Q Consensus 93 FLGRAlAEvL~E 104 (212)
++|+++|+.|-+
T Consensus 20 gIG~a~a~~l~~ 31 (248)
T 3op4_A 20 GIGKAIAELLAE 31 (248)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 589999988865
No 225
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=20.02 E-value=80 Score=25.79 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=13.4
Q ss_pred hhccccHHHHHHHHHHHHHH
Q 028159 116 TVGRLQAEQQKQVQEFQEDV 135 (212)
Q Consensus 116 evGKfdAEQre~LrqFqEEV 135 (212)
.|++|..|+++.|.+..+++
T Consensus 149 VL~~f~~~E~~~l~~~i~~a 168 (193)
T 4hoy_A 149 VLGKAPSNEQSLMDGAIDHA 168 (193)
T ss_dssp HTSBCCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 36889998887775444433
Done!