BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028160
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXT 105
G NDC+FCKI+ G+ P+ K+YE + L LD + + G
Sbjct: 33 GSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGH----------TLVIPKEHVR 82
Query: 106 KELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKA 164
L A + A++P I+ A+ KAT AD N++ NN AGQ +FH H+H++PR A
Sbjct: 83 NALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFA 141
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELPF 110
CVFC I+ G++PA+++YE + L ILD P + G T P
Sbjct: 7 CVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGH-------TLVIPKTHTVDLTDTPP- 58
Query: 111 QNEVVAAMCAKVPLISNAIMKAT-DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLW 169
E VA M A I+ A ++ AD N+ +N+G AA Q +FH H+H++PR+ D L
Sbjct: 59 --ETVAGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLS 116
Query: 170 TSES--LRRRPLKIDQETS 186
++ +RR P D+E S
Sbjct: 117 FAKGMVMRRDP---DREES 132
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELP 109
+C+FCKII G+ P+ K+YE + L LD + ++ G
Sbjct: 6 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGH----------TLVIPKTHIENVYE 55
Query: 110 FQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPR----KAH 165
F +E+ VP I+ AI + N L NNG AGQ +FH H+HIIPR
Sbjct: 56 FTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGF 115
Query: 166 DCLWTSESLRRRPLKIDQETSQLADQV 192
+W + + +P + +S +A ++
Sbjct: 116 GAVWKTHADDYKPEDLQNISSSIAKRL 142
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
++C+FCKII G+ K+YE + L LD + ++ G
Sbjct: 9 DNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGH----------TLVIPKVHKQDIF 58
Query: 109 PFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD-- 166
E+ + + + VP I+NAI + FNLL NNG AGQ +FH H+H+IPR +
Sbjct: 59 ALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDG 118
Query: 167 --CLWTSESLRRRPLKIDQETSQLADQVR 193
+W S + S +A+ V+
Sbjct: 119 FGAVWKSHQNEYTXENLQNIASTIANSVK 147
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELPF 110
C FC II E +YE + ILD P+SLG L
Sbjct: 1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGH----------TLVIPKKHFENYLEA 50
Query: 111 QNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWT 170
+ +A + V L+S I A AD LL N G +AGQVIFH H+HIIP D
Sbjct: 51 DEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDI 110
Query: 171 SESLRRRPLKIDQETSQLADQVREKLSNI 199
+S + R + + L +RE + N+
Sbjct: 111 FKSFKPRKEQEKEYYELLQKIIRESIENL 139
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 35 AQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXX 94
AQ + S + ++N+ +F K+IR E P+V++YE D + +D P + G
Sbjct: 14 AQTQGPGSMKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGH--------- 64
Query: 95 XXXXXXXXXXTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFH 154
L E + + V I+ A+ KA AD ++ N AA+ Q ++H
Sbjct: 65 -TLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYH 123
Query: 155 THIHIIPR 162
H HIIPR
Sbjct: 124 LHFHIIPR 131
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELP 109
+C+FCKII+G+ P K+ E L +D NPLS G EL
Sbjct: 12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHM--------LVIPKEHASCLHELG 63
Query: 110 FQNEV-VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCL 168
++ V + AK S A+ + +N+L NNG+ A Q + H H HIIP+
Sbjct: 64 MEDAADVGVLLAKA---SRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPK------ 114
Query: 169 WTSESLRRRPLKIDQETSQLA-DQVREKLSNICECSSK 205
T E + LKI +T ++A D++ E E +K
Sbjct: 115 -TDE---KTGLKIGWDTVKVASDELAEDAKRYSEAIAK 148
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELP 109
DC+FCKI GE P+ K+YE D L D NP++ KE+
Sbjct: 5 DCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHI---LVVPKKHYDSLIDIPDKEM- 60
Query: 110 FQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 163
++V+ + + I+ K D F ++ N G+ GQ + H H HI+ K
Sbjct: 61 ---DIVSHIHVVINKIAKE--KGFDQTGFRVINNCGSDGGQEVKHLHYHILAGK 109
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELP 109
+CVFCKII+ E P+ YE + + I D NP + KE+
Sbjct: 36 NCVFCKIIKRELPSTIYYEDERVIAIKDINPAA--------PVHVLIIPKEHIANVKEI- 86
Query: 110 FQNEVVAAMCAKVPLISNAIMK--ATDADSFNLLVNNGAAAGQVIFHTHIHII 160
NE A + + +N + + + L+ N G AAGQ +FH H H++
Sbjct: 87 --NESNAQILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLL 137
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 28/157 (17%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXT 105
G C+FC + R A +YE D ++D PLS G F
Sbjct: 3 GSMEGCIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHH----------- 49
Query: 106 KELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAH 165
P+ + + V +++ + +N+L NNG Q +FH H H+IP +
Sbjct: 50 ---PYLHNYKPEELSGVLDTIRHLVQKFGFERYNILQNNGNH--QEVFHVHFHVIPFVSA 104
Query: 166 D----CLWTSESLRRRPLKIDQETSQLADQVREKLSN 198
D W ++S+ D+E S++ ++ R ++S+
Sbjct: 105 DERLMINWKAKSVS------DKEYSEMVEEARLRVSS 135
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 24/119 (20%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D CL D +P + F
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHI-------------- 60
Query: 109 PFQNEVVAAMCAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 160
+++ AA A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 61 ---SQISAAEDADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 24/119 (20%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D CL D +P + F
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHI-------------- 60
Query: 109 PFQNEVVAAMCAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 160
+++ AA A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 61 ---SQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 24/119 (20%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D CL D +P + F
Sbjct: 4 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHI-------------- 49
Query: 109 PFQNEVVAAMCAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 160
+++ AA A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 50 ---SQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 105
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D CL D +P + F + L
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHF-LVIPKKHISQISVAEDDDESL 73
Query: 109 PFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 74 LGHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D CL D +P + F + L
Sbjct: 14 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHF-LVIPKKHISQISVAEDDDESL 72
Query: 109 PFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 73 LGHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 115
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D CL D +P + F + L
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHF-LVIPKKHISQISVAEDDDESL 73
Query: 109 PFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 74 LGHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D CL D +P + F + L
Sbjct: 17 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHF-LVIPKKHISQISVAEDDDESL 75
Query: 109 PFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160
+V CA ++ + ++VN G+ GQ ++H H+H++
Sbjct: 76 LGHLMIVGKKCAADLGLNKG---------YRMVVNEGSDGGQSVYHVHLHVL 118
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 28/121 (23%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D L D +P + F +
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLV-------------------I 55
Query: 109 PFQN--EVVAAMCAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHI 159
P ++ ++ AA A L+ + ++ K AD + ++VN G+ GQ ++H H+H+
Sbjct: 56 PKKHISQISAAEDADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHV 115
Query: 160 I 160
+
Sbjct: 116 L 116
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
+ C+FCKI + + P+ +YE D D NP++ E+
Sbjct: 7 DSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIA--------PIHILVIPKQHIASLNEI 58
Query: 109 PFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 163
+NE A KV + I K + + ++ N G AGQ + H H HI+ K
Sbjct: 59 TEENE---AFIGKVLYKVSLIGKKECPEGYRVVNNIGEDAGQTVKHIHFHILGGK 110
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 24/119 (20%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKEL 108
D +F KIIR E PA ++E D L D +P + F
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHI-------------- 60
Query: 109 PFQNEVVAAMCAKVPLISNAIM--KATDAD-----SFNLLVNNGAAAGQVIFHTHIHII 160
+++ AA A L+ + ++ K AD + ++VN G+ GQ ++H H+H++
Sbjct: 61 ---SQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVL 116
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 115 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 166
VA + + + K S + +G AGQ + H H+H++PRKA D
Sbjct: 55 VADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGD 106
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 115 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 166
VA + + + K S +G AGQ + H H+H++PRKA D
Sbjct: 55 VADLFQTTQRVGTVVEKHFHGTSLTFSXQDGPEAGQTVKHVHVHVLPRKAGD 106
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 131 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 166
K + S + V +G AGQ + H HIHI+PR+A D
Sbjct: 367 KHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGD 402
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 115 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 166
VA + + + K S + +G AGQ + H ++H++PRKA D
Sbjct: 55 VADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVNVHVLPRKAGD 106
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELP 109
+ +F KIIR E P+ +Y+ D D +P + + L
Sbjct: 4 ETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALG 63
Query: 110 FQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII------PRK 163
V A + + + D + L++N GQ ++H H+H++ P
Sbjct: 64 RMITVAAKIAEQ---------EGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLGPML 114
Query: 164 AHDCL 168
AH L
Sbjct: 115 AHKGL 119
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFXXXXXXXXXXXXXXXXXXTKELPF 110
+F KII E P +YE D + L P++ G +E+
Sbjct: 7 SIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGH--------------TLVVPREEIDN 52
Query: 111 QNEVVAAMCAKV----PLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIP-RKAH 165
+V +A +V LI A+ KA + L++ AG + H H+H+ P R
Sbjct: 53 WQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGLII-----AGLEVPHLHVHVFPTRSLS 107
Query: 166 DCLWTS-------ESLRRRPLKIDQETSQLA 189
D + + ESL KI +QLA
Sbjct: 108 DFGFANVDRNPSPESLDEAQAKIKAALAQLA 138
>pdb|3I24|A Chain A, Crystal Structure Of A Hit Family Hydrolase Protein From
Vibrio Fischeri. Northeast Structural Genomics
Consortium Target Id Vfr176
pdb|3I24|B Chain B, Crystal Structure Of A Hit Family Hydrolase Protein From
Vibrio Fischeri. Northeast Structural Genomics
Consortium Target Id Vfr176
Length = 149
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 136 DSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETS--QLADQVR 193
D+F+ N A G ++ HIH I R D W I ++S QL D +R
Sbjct: 71 DNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLR 130
Query: 194 EKLSNI 199
+KLSNI
Sbjct: 131 DKLSNI 136
>pdb|3ANO|A Chain A, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
pdb|3ANO|B Chain B, Crystal Structure Of A Novel Diadenosine
5',5'''-P1,P4-Tetraphosphate Phosphorylase From
Mycobacterium Tuberculosis H37rv
Length = 218
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 137 SFNLLVNNG-AAAGQVIFHTHIHIIPRKAHDC 167
FN+ +N G +A G + H H+H++PR D
Sbjct: 148 GFNVGLNLGTSAGGSLAEHLHVHVVPRWGGDA 179
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 124 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 157
+I N I D+ F ++ G AG ++H H+
Sbjct: 219 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 252
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 124 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 157
+I N I D+ F ++ G AG ++H H+
Sbjct: 220 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 253
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 124 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 157
+I N I D+ F ++ G AG ++H H+
Sbjct: 216 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 249
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 124 LISNAIMKATDADSFNLLVNNGAAAGQVIFHTHI 157
+I N I D+ F ++ G AG ++H H+
Sbjct: 257 VIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHV 290
>pdb|1MKF|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1MKF|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1ML0|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The P8a Variant Of
Cc-Chemokine Mcp-1
pdb|2NYZ|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NYZ|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NZ1|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|X Chain X, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
Length = 382
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 164 AHDCLWTSESLRRRPLKIDQETSQLADQVR 193
+HD +WTS S + P+++ + SQ QVR
Sbjct: 324 SHDGVWTSTSSEQCPIRLVEGQSQNVLQVR 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,093,616
Number of Sequences: 62578
Number of extensions: 155694
Number of successful extensions: 392
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 41
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)