Query 028160
Match_columns 212
No_of_seqs 174 out of 1213
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0537 Hit Diadenosine tetrap 100.0 1.2E-34 2.6E-39 232.7 15.7 137 49-196 1-137 (138)
2 PRK10687 purine nucleoside pho 100.0 4.6E-30 1E-34 201.4 11.8 107 48-164 2-109 (119)
3 cd01277 HINT_subgroup HINT (hi 100.0 1.9E-29 4.1E-34 189.8 12.7 103 50-162 1-103 (103)
4 cd01275 FHIT FHIT (fragile his 100.0 3.3E-29 7.1E-34 196.5 13.5 111 51-171 1-112 (126)
5 cd01276 PKCI_related Protein K 100.0 8E-28 1.7E-32 181.9 11.6 102 50-162 1-104 (104)
6 PF01230 HIT: HIT domain; Int 99.9 5.7E-27 1.2E-31 176.0 10.8 97 58-164 1-97 (98)
7 KOG3275 Zinc-binding protein o 99.9 4E-26 8.7E-31 177.0 11.2 108 48-171 15-126 (127)
8 cd01278 aprataxin_related apra 99.9 4.3E-24 9.3E-29 161.8 11.9 99 50-160 1-103 (104)
9 cd00608 GalT Galactose-1-phosp 99.9 1.1E-23 2.4E-28 190.1 12.9 136 48-194 183-328 (329)
10 PRK11720 galactose-1-phosphate 99.9 1.1E-23 2.4E-28 191.6 12.7 137 48-195 193-338 (346)
11 TIGR00209 galT_1 galactose-1-p 99.9 1.8E-23 4E-28 190.3 12.9 132 48-195 193-338 (347)
12 cd00468 HIT_like HIT family: H 99.9 3.3E-23 7.2E-28 150.5 10.0 86 66-161 1-86 (86)
13 KOG3379 Diadenosine polyphosph 99.9 3.8E-22 8.2E-27 158.7 13.3 123 62-195 16-149 (150)
14 PLN02643 ADP-glucose phosphory 99.9 5E-22 1.1E-26 180.2 14.0 129 48-194 197-331 (336)
15 PF11969 DcpS_C: Scavenger mRN 99.7 1.1E-16 2.3E-21 124.9 8.3 99 50-162 1-104 (116)
16 PF02744 GalP_UDP_tr_C: Galact 99.6 5.7E-15 1.2E-19 122.1 7.3 138 49-198 13-159 (166)
17 COG1085 GalT Galactose-1-phosp 99.5 4.4E-14 9.6E-19 128.0 10.1 142 48-199 184-333 (338)
18 KOG4359 Protein kinase C inhib 99.4 9.8E-13 2.1E-17 105.5 10.3 115 30-161 16-135 (166)
19 KOG2958 Galactose-1-phosphate 99.1 1.6E-10 3.5E-15 102.7 7.5 137 48-195 198-345 (354)
20 PF04677 CwfJ_C_1: Protein sim 98.9 3.7E-08 8E-13 77.7 12.7 103 45-163 7-109 (121)
21 KOG2476 Uncharacterized conser 97.9 0.00012 2.6E-09 69.1 11.0 103 46-164 316-418 (528)
22 KOG0562 Predicted hydrolase (H 97.5 0.0001 2.3E-09 61.1 3.8 88 62-163 14-106 (184)
23 cd00608 GalT Galactose-1-phosp 96.9 0.0035 7.6E-08 56.9 8.1 65 93-160 96-160 (329)
24 KOG2477 Uncharacterized conser 96.8 0.0059 1.3E-07 58.6 8.9 104 48-165 406-510 (628)
25 PLN02643 ADP-glucose phosphory 96.6 0.015 3.2E-07 53.3 9.6 65 93-160 110-174 (336)
26 KOG3969 Uncharacterized conser 96.6 0.023 5.1E-07 50.9 10.3 93 62-163 159-257 (310)
27 COG1085 GalT Galactose-1-phosp 96.2 0.026 5.5E-07 51.9 8.5 64 94-160 98-161 (338)
28 PLN03103 GDP-L-galactose-hexos 96.1 0.014 3.1E-07 54.7 6.6 73 69-161 168-241 (403)
29 PRK11720 galactose-1-phosphate 95.7 0.056 1.2E-06 49.7 8.6 63 93-160 108-170 (346)
30 TIGR00209 galT_1 galactose-1-p 95.3 0.13 2.8E-06 47.4 9.5 62 94-160 109-170 (347)
31 KOG2720 Predicted hydrolase (H 94.8 0.025 5.5E-07 52.1 3.3 69 73-160 169-237 (431)
32 COG4360 APA2 ATP adenylyltrans 94.6 0.04 8.6E-07 48.7 3.9 73 69-162 91-163 (298)
33 PRK05471 CDP-diacylglycerol py 94.1 0.25 5.3E-06 43.8 7.7 100 49-160 40-144 (252)
34 TIGR00672 cdh CDP-diacylglycer 93.8 0.24 5.2E-06 43.8 7.2 98 49-160 39-143 (250)
35 COG2134 Cdh CDP-diacylglycerol 91.5 0.88 1.9E-05 39.5 7.3 86 64-161 56-145 (252)
36 PF13395 HNH_4: HNH endonuclea 91.0 0.16 3.4E-06 34.3 1.9 33 10-42 18-52 (54)
37 PF02611 CDH: CDP-diacylglycer 90.9 0.64 1.4E-05 40.5 6.0 83 66-160 29-115 (222)
38 COG5075 Uncharacterized conser 90.4 0.79 1.7E-05 40.7 6.1 92 61-161 153-250 (305)
39 KOG2958 Galactose-1-phosphate 88.5 1.4 3E-05 40.2 6.3 55 100-159 117-174 (354)
40 PF01087 GalP_UDP_transf: Gala 88.3 0.98 2.1E-05 37.6 5.1 57 100-161 119-178 (183)
41 PF01844 HNH: HNH endonuclease 86.7 0.46 1E-05 30.1 1.7 32 8-39 12-45 (47)
42 PF01076 Mob_Pre: Plasmid reco 85.8 10 0.00022 31.9 9.9 90 94-199 83-173 (196)
43 PRK11295 hypothetical protein; 84.0 0.53 1.1E-05 36.9 1.2 36 4-39 36-73 (113)
44 smart00507 HNHc HNH nucleases. 79.6 1.2 2.7E-05 27.8 1.6 27 9-35 23-51 (52)
45 cd00085 HNHc HNH nucleases; HN 74.9 1 2.3E-05 28.8 0.2 30 8-37 24-55 (57)
46 PF03432 Relaxase: Relaxase/Mo 59.9 16 0.00034 30.7 4.5 37 124-166 76-115 (242)
47 PRK05270 galactose-1-phosphate 48.0 1.5E+02 0.0033 28.9 9.3 132 47-201 170-336 (493)
48 PF11296 DUF3097: Protein of u 47.5 12 0.00025 33.4 1.7 16 3-18 156-171 (275)
49 TIGR01865 cas_Csn1 CRISPR-asso 42.1 7.8 0.00017 39.7 -0.2 36 9-44 601-638 (805)
50 TIGR01239 galT_2 galactose-1-p 41.7 2E+02 0.0043 28.0 9.1 131 48-201 168-333 (489)
51 PRK02289 4-oxalocrotonate taut 37.6 83 0.0018 21.0 4.4 21 182-202 14-34 (60)
52 COG4468 GalT Galactose-1-phosp 35.4 3.3E+02 0.0072 26.2 9.2 133 46-201 171-338 (503)
53 COG1403 McrA Restriction endon 34.9 12 0.00026 28.4 -0.2 32 9-40 81-114 (146)
54 PF04986 Y2_Tnp: Putative tran 32.5 1.2E+02 0.0026 25.1 5.5 46 151-197 13-65 (183)
55 PRK13878 conjugal transfer rel 31.9 53 0.0012 33.6 3.8 31 125-161 89-121 (746)
56 PF14317 YcxB: YcxB-like prote 31.6 1.2E+02 0.0025 19.4 4.3 25 64-100 23-47 (62)
57 PRK07218 replication factor A; 31.5 1.1E+02 0.0023 29.3 5.5 69 25-120 292-362 (423)
58 PF01446 Rep_1: Replication pr 30.1 1.9E+02 0.0042 25.1 6.6 10 151-160 78-87 (233)
59 PRK00745 4-oxalocrotonate taut 29.8 1.3E+02 0.0028 19.8 4.4 20 182-201 14-33 (62)
60 PRK01271 4-oxalocrotonate taut 28.9 1.4E+02 0.003 21.6 4.6 37 152-204 1-37 (76)
61 PF09899 DUF2126: Putative ami 25.0 1.8E+02 0.0039 30.1 6.0 76 120-196 83-163 (819)
62 KOG1785 Tyrosine kinase negati 23.1 40 0.00086 32.3 1.1 35 22-56 362-413 (563)
63 PRK07217 replication factor A; 23.0 3.1E+02 0.0067 25.2 6.7 69 25-120 183-255 (311)
64 PF05280 FlhC: Flagellar trans 22.9 29 0.00062 29.1 0.1 29 30-58 136-164 (175)
65 PF01361 Tautomerase: Tautomer 21.2 2.5E+02 0.0054 18.3 5.0 21 182-202 13-33 (60)
66 PF02729 OTCace_N: Aspartate/o 20.6 1.4E+02 0.0031 23.8 3.7 31 100-132 1-31 (142)
No 1
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=232.65 Aligned_cols=137 Identities=38% Similarity=0.590 Sum_probs=127.2
Q ss_pred CCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHH
Q 028160 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNA 128 (212)
Q Consensus 49 ~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~ 128 (212)
+.|+||+|+++|.|..+|||++++++|+|.+|.++||+ ||||| +|+.++.||+ ++++.+|+..+++++++
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~-------LviPk-~h~~~l~~l~--~~~~~~l~~~~~~ia~a 70 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHT-------LVIPK-RHVSDLEDLD--PEELAELFLLAQKIAKA 70 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeE-------EEEec-cchhhhhhCC--HHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999 99999 9999999999 99999999999999999
Q ss_pred HHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHH
Q 028160 129 IMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKL 196 (212)
Q Consensus 129 l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al 196 (212)
+++++++++||+++|+|..+||+|+|+|+|||||+.+|..|+...|...... .+++++++++|+++|
T Consensus 71 l~~~~~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d~~~~~~~~~~~~~~-~~~l~~~~~~i~~~l 137 (138)
T COG0537 71 LKEAFGADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDNFPGPGWGTKVEP-NEELEELAEKIRKAL 137 (138)
T ss_pred HHHHhCCCceEEEEecCcccCcCcceEEEEEcCCcCCCCCcccccccccCCc-HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887777653322 278999999999765
No 2
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.97 E-value=4.6e-30 Score=201.41 Aligned_cols=107 Identities=21% Similarity=0.417 Sum_probs=98.1
Q ss_pred CCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISN 127 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~ 127 (212)
.++|+||+|++|+.|..+|||+|.+++|+|.+|.++||+ ||||| +|+.++.||+ ++++.+++.+++.+.+
T Consensus 2 ~~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~-------LViPK-~H~~~l~dl~--~~~~~~l~~l~~~~~~ 71 (119)
T PRK10687 2 AEETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHI-------LIIPN-ILIPTVNDVS--AEHEQALGRMITVAAK 71 (119)
T ss_pred CCCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccE-------EEEeh-hHhCChhHCC--hHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999 99999 9999999999 9988888888877766
Q ss_pred HHH-HHcCCCceeEEEecCCCCCCccceEEEEEeccCC
Q 028160 128 AIM-KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKA 164 (212)
Q Consensus 128 ~l~-~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~ 164 (212)
.++ +.+++++||+++|+|+.+||+|+|+|+|||||+.
T Consensus 72 ~~~~~~~~~~g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 72 IAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred HHHHhCCCCCceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 554 3467889999999999999999999999999986
No 3
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.96 E-value=1.9e-29 Score=189.76 Aligned_cols=103 Identities=46% Similarity=0.744 Sum_probs=100.6
Q ss_pred CCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028160 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAI 129 (212)
Q Consensus 50 ~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l 129 (212)
+|+||+++++|.+.++|+|+++|+||++.+|.+|||+ +|+|| +|+.++.||+ ++++.+|+.+++++.+++
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~-------lI~Pk-~H~~~~~~l~--~~e~~~l~~~~~~v~~~l 70 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHT-------LVIPK-KHYENLLDLD--PEELAELILAAKKVARAL 70 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeE-------EEEec-cccCChhhCC--HHHHHHHHHHHHHHHHHH
Confidence 5999999999988889999999999999999999999 99999 9999999999 999999999999999999
Q ss_pred HHHcCCCceeEEEecCCCCCCccceEEEEEecc
Q 028160 130 MKATDADSFNLLVNNGAAAGQVIFHTHIHIIPR 162 (212)
Q Consensus 130 ~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR 162 (212)
.+.+++++||+++|+|+..||+++|+|+||+||
T Consensus 71 ~~~~~~~~~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 71 KKALKADGLNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred HHhcCCCceEEEEeCCcccCcccCEEEEEEccC
Confidence 999999999999999999999999999999998
No 4
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.96 E-value=3.3e-29 Score=196.52 Aligned_cols=111 Identities=27% Similarity=0.496 Sum_probs=106.1
Q ss_pred CcccccccCCCC-ceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028160 51 CVFCKIIRGESP-AVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAI 129 (212)
Q Consensus 51 C~FC~ii~~e~p-~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l 129 (212)
|+||+|++++.+ .++|||++.+++|++..|.+|||+ ||+|| +|+.++.+|+ ++++.+++.+++.+.+++
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~-------lIiPk-~H~~~~~~L~--~~e~~~l~~~~~~v~~~l 70 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHV-------LVVPY-RHVPRLEDLT--PEEIADLFKLVQLAMKAL 70 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcE-------EEEec-cccCChhhCC--HHHHHHHHHHHHHHHHHH
Confidence 999999999876 789999999999999999999999 99999 9999999999 999999999999999999
Q ss_pred HHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCcc
Q 028160 130 MKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 171 (212)
Q Consensus 130 ~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~ 171 (212)
++.+++++||+++|+|+.+||+++|+|+|||||+.+|..|..
T Consensus 71 ~~~~~~~~~n~~~~~g~~~gq~v~H~HiHiiPR~~~d~~~~~ 112 (126)
T cd01275 71 KVVYKPDGFNIGINDGKAGGGIVPHVHIHIVPRWNGDTNFMP 112 (126)
T ss_pred HHhcCCCceEEEEeCCcccCCCcCEEEEEEeCCcCCCCCCCC
Confidence 999999999999999999999999999999999999876543
No 5
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.95 E-value=8e-28 Score=181.87 Aligned_cols=102 Identities=33% Similarity=0.585 Sum_probs=92.1
Q ss_pred CCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHH
Q 028160 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAI 129 (212)
Q Consensus 50 ~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l 129 (212)
+|+||+|+++|.+.++|||++.+++|+|.+|.+|||+ ||+|| +|+.++.||+ +++..++..+++.+ +++
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~-------lIiPk-~H~~~~~dl~--~~~~~~l~~~~~~~-~~~ 69 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHI-------LVIPK-KHIASLSDAT--EEDEELLGHLLSAA-AKV 69 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEE-------EEEec-ceeCChHHcc--cccHHHHHHHHHHH-HHH
Confidence 5999999999999999999999999999999999999 99999 9999999999 77777777777666 555
Q ss_pred HHHcC--CCceeEEEecCCCCCCccceEEEEEecc
Q 028160 130 MKATD--ADSFNLLVNNGAAAGQVIFHTHIHIIPR 162 (212)
Q Consensus 130 ~~~~~--~~~~ni~~n~g~~agq~v~HlHiHIIPR 162 (212)
.+.++ +++||+++|+|+.+||+++|+|+|||+|
T Consensus 70 ~~~~~~~~~~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 70 AKDLGIAEDGYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred HHHhCCCCCCEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 55566 6899999999999999999999999986
No 6
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.94 E-value=5.7e-27 Score=176.05 Aligned_cols=97 Identities=39% Similarity=0.604 Sum_probs=92.6
Q ss_pred cCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 028160 58 RGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADS 137 (212)
Q Consensus 58 ~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~ 137 (212)
++|.|..+|||+|.++||++.+|.++||+ ||||| +|+.++.||+ ++++.+|+..++++++++.+.+++++
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~p~~~gh~-------LVipk-~H~~~l~dl~--~~~~~~l~~~~~~v~~~l~~~~~~~~ 70 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIFPISPGHL-------LVIPK-RHVESLSDLP--PEERAELMQLVQKVAKALKEAFGPDG 70 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESSTSSTTEE-------EEEES-STGSSGGGSH--HHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred CCCCCeeEEEECCCEEEEEcCCCCCCeEE-------EEEec-ccccchhcCC--HHHHHHHHHHHHHHHHHHhcccccce
Confidence 47889999999999999999999999999 99999 9999999999 99999999999999999999999999
Q ss_pred eeEEEecCCCCCCccceEEEEEeccCC
Q 028160 138 FNLLVNNGAAAGQVIFHTHIHIIPRKA 164 (212)
Q Consensus 138 ~ni~~n~g~~agq~v~HlHiHIIPR~~ 164 (212)
||+.+|+|+.+||+++|+|+|||||++
T Consensus 71 ~~~~~~~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 71 YNVIINNGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp EEEEEEESGGGTSSSSS-EEEEEEEST
T ss_pred eeccccchhhhcCccCEEEEEEecccC
Confidence 999999999999999999999999986
No 7
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.94 E-value=4e-26 Score=177.04 Aligned_cols=108 Identities=26% Similarity=0.564 Sum_probs=93.0
Q ss_pred CCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCccccccc---ccCCCCHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVST---KELPFQNEVVAAMCAKVPL 124 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l---~dL~~~~ee~~~l~~~~~~ 124 (212)
+.+|+||+|+++|+|..+|||+|.+++|.|+.|.+|||+ ||||| +|++.+ .|.+ ++.+..++..+++
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~Hf-------LvIPK-~hi~~~s~aed~~--~e~Lg~ll~~~k~ 84 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHF-------LVIPK-KHITQLSKAEDRD--DELLGHLLPVAKK 84 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceE-------EEeec-ccccchhhcccCC--HHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999 99999 995544 4555 7888888887776
Q ss_pred HHHHHHHHcCCC-ceeEEEecCCCCCCccceEEEEEeccCCCCCCCcc
Q 028160 125 ISNAIMKATDAD-SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 171 (212)
Q Consensus 125 v~~~l~~~~~~~-~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~ 171 (212)
+++ .+|.. +||+++|||..+.|+|+|+|+||+|+.. ..||+
T Consensus 85 vak----~~Gl~~gYrvv~NnG~~g~QsV~HvH~HvlgGrq--m~WPp 126 (127)
T KOG3275|consen 85 VAK----ALGLEDGYRVVQNNGKDGHQSVYHVHLHVLGGRQ--MQWPP 126 (127)
T ss_pred HHH----HhCcccceeEEEcCCcccceEEEEEEEEEeCCcc--cCCCC
Confidence 664 55754 6999999999999999999999999543 45875
No 8
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.91 E-value=4.3e-24 Score=161.82 Aligned_cols=99 Identities=23% Similarity=0.406 Sum_probs=91.1
Q ss_pred CCcccccccCCC--CceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHH
Q 028160 50 DCVFCKIIRGES--PAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISN 127 (212)
Q Consensus 50 ~C~FC~ii~~e~--p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~ 127 (212)
.|+||+|+++|. +.++||+++.+++|.|.+|.+|||+ ||+|| +|+.++.+|+ ++++.++..+++.+.+
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~-------lIiPk-~h~~~~~~l~--~~~~~~l~~~~~~~~~ 70 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHY-------LVIPK-EHIASLKALT--KEDVPLLEHMETVGRE 70 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceE-------EEEec-CCCCChHHCC--HhHHHHHHHHHHHHHH
Confidence 499999999886 6899999999999999999999999 99999 9999999999 9999999999998877
Q ss_pred HHHHH--cCCCceeEEEecCCCCCCccceEEEEEe
Q 028160 128 AIMKA--TDADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 128 ~l~~~--~~~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
.+.+. +++++||+++|+|+. |+|+|+|+|||
T Consensus 71 ~l~~~~~~~~~~~n~g~h~~p~--~~v~H~H~Hvi 103 (104)
T cd01278 71 KLLRSDNTDPSEFRFGFHAPPF--TSVSHLHLHVI 103 (104)
T ss_pred HHHHHcCCCccCeEEEeCCCCC--cCeeeEEEEee
Confidence 77776 567899999999875 89999999998
No 9
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.90 E-value=1.1e-23 Score=190.05 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=114.6
Q ss_pred CCCCcccccccCCCC--ceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESP--AVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p--~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
.+.|+||+|+++|.+ .++|||++.|++|+|++|.+|||+ ||||| +|+.++.||+ ++++.+|+.+++.+
T Consensus 183 ~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~-------lIiPK-rH~~~~~dl~--~~e~~~La~~l~~v 252 (329)
T cd00608 183 HGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEV-------HILPK-RHVSRFTDLT--DEEREDLAEILKRL 252 (329)
T ss_pred cCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEE-------EEecC-CCcCChhHCC--HHHHHHHHHHHHHH
Confidence 378999999999865 899999999999999999999999 99999 9999999999 99999999999999
Q ss_pred HHHHHHHcC-CCceeEEEecCCCCC----CccceEEEEEeccCCCCCC-Ccccc--ccCCCCCChHHHHHHHHHHHH
Q 028160 126 SNAIMKATD-ADSFNLLVNNGAAAG----QVIFHTHIHIIPRKAHDCL-WTSES--LRRRPLKIDQETSQLADQVRE 194 (212)
Q Consensus 126 ~~~l~~~~~-~~~~ni~~n~g~~ag----q~v~HlHiHIIPR~~~d~~-w~~~~--~~~~~~~~~~e~~~la~~lr~ 194 (212)
.+++.+.++ ..+||+++|+++..| +.++|+|+||+||+..+.. +..+. ..+.... +...++.|++||+
T Consensus 253 ~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~~~~~aGfE~~~g~~in-~~~PE~aA~~LR~ 328 (329)
T cd00608 253 LARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATVLKFMAGFELGAGEFIN-DVTPEQAAARLRE 328 (329)
T ss_pred HHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCceeeeEEeeccCCCccC-CCCHHHHHHHHhc
Confidence 999999999 568999999998764 6899999999999875542 21111 1112222 5567888888885
No 10
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.90 E-value=1.1e-23 Score=191.64 Aligned_cols=137 Identities=9% Similarity=0.101 Sum_probs=110.9
Q ss_pred CCCCcccccccCCCC--ceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESP--AVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p--~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
.+.|+||+|+++|.+ .++|||+++|+||+|++|.+|||+ ||+|| +|+.++.||+ ++++.+|+.+++++
T Consensus 193 ~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~-------lIiPK-rH~~~~~dl~--dee~~~La~~lk~v 262 (346)
T PRK11720 193 HGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFET-------LLLPK-AHVLRLTDLT--DAQRDDLALALKKL 262 (346)
T ss_pred cCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeE-------EEecc-cCCCChhhCC--HHHHHHHHHHHHHH
Confidence 378999999999965 699999999999999999999999 99999 9999999999 99999999999999
Q ss_pred HHHHHHHcCCC-ceeEEEecCCCCC--CccceEEEEEeccCC---CCCCCcccc-ccCCCCCChHHHHHHHHHHHHH
Q 028160 126 SNAIMKATDAD-SFNLLVNNGAAAG--QVIFHTHIHIIPRKA---HDCLWTSES-LRRRPLKIDQETSQLADQVREK 195 (212)
Q Consensus 126 ~~~l~~~~~~~-~~ni~~n~g~~ag--q~v~HlHiHIIPR~~---~d~~w~~~~-~~~~~~~~~~e~~~la~~lr~a 195 (212)
.+++.+.++.+ .||+++|+++..| +.++|||+||+||+. ++..|..+. +.+.... +-.-|+.|++||++
T Consensus 263 ~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aGfE~~g~~in-~~~PE~aA~~LR~~ 338 (346)
T PRK11720 263 TSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQR-DLTAEQAAERLRAV 338 (346)
T ss_pred HHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceeeeecccCccC-CCCHHHHHHHHhhc
Confidence 99999999765 7999999999754 579999999999964 211121111 1111111 23345678888874
No 11
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.90 E-value=1.8e-23 Score=190.28 Aligned_cols=132 Identities=10% Similarity=0.143 Sum_probs=111.0
Q ss_pred CCCCcccccccCCC--CceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGES--PAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 48 ~~~C~FC~ii~~e~--p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
++.|+||+|+++|. +.++|||++.|+||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+.+++.+
T Consensus 193 ~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~-------lIiPK-rH~~~~~dl~--d~e~~~La~~lk~v 262 (347)
T TIGR00209 193 HKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFET-------LLLPK-AHVLRITDLT--DAQRSDLALILKKL 262 (347)
T ss_pred cCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeE-------EEeec-cCCCChhhCC--HHHHHHHHHHHHHH
Confidence 47899999999986 5799999999999999999999999 99999 9999999999 99999999999999
Q ss_pred HHHHHHHcCCC-ceeEEEecCCCCCC--ccceEEEEEeccCC-CC--------CCCccccccCCCCCChHHHHHHHHHHH
Q 028160 126 SNAIMKATDAD-SFNLLVNNGAAAGQ--VIFHTHIHIIPRKA-HD--------CLWTSESLRRRPLKIDQETSQLADQVR 193 (212)
Q Consensus 126 ~~~l~~~~~~~-~~ni~~n~g~~agq--~v~HlHiHIIPR~~-~d--------~~w~~~~~~~~~~~~~~e~~~la~~lr 193 (212)
.+++.+.++.+ +||+++|+++..|+ ..+|||+||+||+. .+ ..| .+.+.+ +-.-|+.|++||
T Consensus 263 ~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aGfE~-~g~~in-----~~~PE~aA~~LR 336 (347)
T TIGR00209 263 TSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEM-LGETQR-----DLTAEQAAERLR 336 (347)
T ss_pred HHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceeehhh-hcCccC-----CCCHHHHHHHHH
Confidence 99999999765 89999999998776 56789999999954 11 224 333322 223456777777
Q ss_pred HH
Q 028160 194 EK 195 (212)
Q Consensus 194 ~a 195 (212)
+.
T Consensus 337 ~~ 338 (347)
T TIGR00209 337 AL 338 (347)
T ss_pred hc
Confidence 65
No 12
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.89 E-value=3.3e-23 Score=150.52 Aligned_cols=86 Identities=22% Similarity=0.435 Sum_probs=84.1
Q ss_pred EEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecC
Q 028160 66 LYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNG 145 (212)
Q Consensus 66 v~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g 145 (212)
|||++.++||+|.+|.++||+ ||||| +|+.++.+|+ ++++.+++.+++++.+++++.++.++||+++|+|
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~-------lIipk-~H~~~~~~l~--~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g 70 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHV-------LVCPK-RHVETLPDLD--EALLADLVITAQRVAAELEKHGNVPSLTVFVNDG 70 (86)
T ss_pred CeecCcEEEEECCCCCCCCcE-------EEeCc-hhhCChhHCC--HHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 689999999999999999999 99999 9999999999 9999999999999999999999999999999999
Q ss_pred CCCCCccceEEEEEec
Q 028160 146 AAAGQVIFHTHIHIIP 161 (212)
Q Consensus 146 ~~agq~v~HlHiHIIP 161 (212)
+.+||+++|+|+||||
T Consensus 71 ~~~g~~v~H~H~hiiP 86 (86)
T cd00468 71 AAAGQSVPHVHLHVLP 86 (86)
T ss_pred ccCCCcCCEEEEEeCC
Confidence 9999999999999998
No 13
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.88 E-value=3.8e-22 Score=158.75 Aligned_cols=123 Identities=26% Similarity=0.441 Sum_probs=106.9
Q ss_pred CceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Q 028160 62 PAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLL 141 (212)
Q Consensus 62 p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~ 141 (212)
+..++|++++.++|.+..|..|||+ ||+|+ |-+..|.||+ .+|.++|...++++.+.|++.++.+++|+.
T Consensus 16 ~~~VFykT~~sfafvNlkPvvpgHV-------Lv~P~-R~vpRl~dLt--~~E~aDlF~t~~~v~~~lek~~~~ts~ti~ 85 (150)
T KOG3379|consen 16 PDHVFYKTKHSFAFVNLKPVVPGHV-------LVSPL-RVVPRLTDLT--AAETADLFTTVQKVQRVLEKHYNATSLTIA 85 (150)
T ss_pred cceEEEeccceEEEEeccccccceE-------EEecc-ccccccccCC--cHHHHHHHHHHHHHHHHHHHHhcccceEEE
Confidence 4789999999999999999999999 99999 9999999999 999999999999999999999999999999
Q ss_pred EecCCCCCCccceEEEEEeccCCCCCC-----------CccccccCCCCCChHHHHHHHHHHHHH
Q 028160 142 VNNGAAAGQVIFHTHIHIIPRKAHDCL-----------WTSESLRRRPLKIDQETSQLADQVREK 195 (212)
Q Consensus 142 ~n~g~~agq~v~HlHiHIIPR~~~d~~-----------w~~~~~~~~~~~~~~e~~~la~~lr~a 195 (212)
+.+|+-+||+|+|+|+||+||+.+|+. |..+..+|.+ -.-+|+.+=|+.+|+.
T Consensus 86 iQDG~~AGQTVpHvHvHIlPR~~gDf~~Nd~IY~~L~~~~~e~~~r~~-Rs~eEM~eEA~~lr~~ 149 (150)
T KOG3379|consen 86 IQDGPEAGQTVPHVHVHILPRKAGDFGDNDLIYDELDKHEKELEDRKP-RSLEEMAEEAQRLREY 149 (150)
T ss_pred eccccccCcccceeEEEEccccccccccchHHHHHHHhcccccccCCc-chHHHHHHHHHHHHhh
Confidence 999999999999999999999999873 3222122222 2256777777777764
No 14
>PLN02643 ADP-glucose phosphorylase
Probab=99.88 E-value=5e-22 Score=180.17 Aligned_cols=129 Identities=13% Similarity=0.180 Sum_probs=108.9
Q ss_pred CCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISN 127 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~ 127 (212)
.+.|+||+|+++|. +|||+++|++|+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+.+++++.+
T Consensus 197 ~g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~ev-------lIiPK-rH~~~~~dl~--~~e~~~La~ilk~v~~ 263 (336)
T PLN02643 197 TGKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEI-------WIIPR-DHSSNFHEID--DDKAVDLGGLLKLMLQ 263 (336)
T ss_pred hCCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEE-------EEEec-cccCChhhCC--HHHHHHHHHHHHHHHH
Confidence 47899999999886 9999999999999999999999 99999 9999999999 9999999999999999
Q ss_pred HHHHHcCCCceeEEEecCCC--CCC--ccceEEEEEeccCCCC--CCCccccccCCCCCChHHHHHHHHHHHH
Q 028160 128 AIMKATDADSFNLLVNNGAA--AGQ--VIFHTHIHIIPRKAHD--CLWTSESLRRRPLKIDQETSQLADQVRE 194 (212)
Q Consensus 128 ~l~~~~~~~~~ni~~n~g~~--agq--~v~HlHiHIIPR~~~d--~~w~~~~~~~~~~~~~~e~~~la~~lr~ 194 (212)
++.+.++.++||+++|+++. +++ ..+|||+||+||+... ..|..+.+.+. -.-|+.|++||+
T Consensus 264 ~l~~~~~~~pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~~~aGfElg~g~~in~-----~~PE~aA~~LR~ 331 (336)
T PLN02643 264 KISKQLNDPPYNYMIQTSPLGVEESNLPYTHWFLQIVPQLSGVGGFELGTGCYINP-----VFPEDAAKVLRE 331 (336)
T ss_pred HHHHhcCCCCceeeeecCCCccccCcccceEEEEEEecCcCCccceeccCCCeeCC-----CCHHHHHHHHHh
Confidence 99999998899999999997 345 4577778999998752 23444433222 234567778876
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.68 E-value=1.1e-16 Score=124.86 Aligned_cols=99 Identities=25% Similarity=0.451 Sum_probs=73.3
Q ss_pred CCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcc-cccccccCCCCHHHHHHHHHHHHHHHHH
Q 028160 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSS-IVVSTKELPFQNEVVAAMCAKVPLISNA 128 (212)
Q Consensus 50 ~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~r-Hv~~l~dL~~~~ee~~~l~~~~~~v~~~ 128 (212)
.|+||.|.+++.+..++|+++.+++|.|.+|.++.|+ ||||| + |+.++.+|+ .+.+.-|..+.....+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~-------LviPk-~~~i~sl~~L~--~~~~~lL~~m~~~~~~~ 70 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHL-------LVIPK-DPHIRSLRDLT--PEHLPLLERMREVAREL 70 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEE-------EEEES-SSS-SSGGG----GGGHHHHHHHHHHHHHH
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEE-------EEEee-cCCCCChHHcC--HHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999 99999 7 999999999 55544444444444444
Q ss_pred HHHHcC----CCceeEEEecCCCCCCccceEEEEEecc
Q 028160 129 IMKATD----ADSFNLLVNNGAAAGQVIFHTHIHIIPR 162 (212)
Q Consensus 129 l~~~~~----~~~~ni~~n~g~~agq~v~HlHiHIIPR 162 (212)
+.+... ...++++++.. ++++|+|+|||..
T Consensus 71 ~~~~~~~~~~~~~~~~gfH~~----PS~~HLHlHvi~~ 104 (116)
T PF11969_consen 71 LKEEYPGDLDSDDIRLGFHYP----PSVYHLHLHVISP 104 (116)
T ss_dssp HHHHH-TT-EGGGEEEEEESS-----SSSS-EEEEEET
T ss_pred HHHhcccccchhhhcccccCC----CCcceEEEEEccC
Confidence 555442 34688888754 4899999999974
No 16
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.57 E-value=5.7e-15 Score=122.13 Aligned_cols=138 Identities=21% Similarity=0.249 Sum_probs=84.8
Q ss_pred CCCcccccccCC--CCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160 49 NDCVFCKIIRGE--SPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS 126 (212)
Q Consensus 49 ~~C~FC~ii~~e--~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~ 126 (212)
+.|+||++++-| ...++|+++++|++|.+.....|..+ +|+|| +|+.++.+|+ ++|..+|+.+++.+.
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev-------~ilpk-rh~~~l~~l~--~~E~~dlA~~l~~i~ 82 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEV-------WILPK-RHVPSLADLT--DEERDDLAAILKPIL 82 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-E-------EEEES-S--SSGGG----HHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEE-------EEecC-CChhhHHHhh--hHHHhhHHHHHHHHH
Confidence 889999999766 35799999999999999999999999 99999 9999999999 999999999999999
Q ss_pred HHHHHHcCC-CceeEEEecCCCCCCcc---ceEEEEEec-cCCCCCC--CccccccCCCCCChHHHHHHHHHHHHHHHh
Q 028160 127 NAIMKATDA-DSFNLLVNNGAAAGQVI---FHTHIHIIP-RKAHDCL--WTSESLRRRPLKIDQETSQLADQVREKLSN 198 (212)
Q Consensus 127 ~~l~~~~~~-~~~ni~~n~g~~agq~v---~HlHiHIIP-R~~~d~~--w~~~~~~~~~~~~~~e~~~la~~lr~al~~ 198 (212)
+++.+.++. ..|++++++.|..+..- +|+|+.+-. |.+.... .+.+.+..+ .. +...++.|.+||.++..
T Consensus 83 ~r~d~lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~~~ir~~~i~k~~vG~e~l~~~-~~-d~~pE~~a~~Lr~~~~~ 159 (166)
T PF02744_consen 83 RRYDNLFETSFPYNMGIHQAPVNGEDPEHWFHPHFEPPHIRSENIGKFEVGLEILPGR-LR-DETPEQAAALLRNELSD 159 (166)
T ss_dssp HHHHHHCTS---EEEEEE---SSSS--TT--EEEEE--BESSTTEB----THHHHT-E-EE-SS-HHHHHHHHH-TS-S
T ss_pred HHhcccCCCCCCCchhhhcCCCCcccchhhhhcccccccccccccceeeeeHhhhhhh-hc-ccCHHHHHHHHhhhhHH
Confidence 999999984 58999999998766543 455544322 2332222 222222211 21 34456667778755543
No 17
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.53 E-value=4.4e-14 Score=127.97 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=113.7
Q ss_pred CCCCcccccccCCCC--ceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESP--AVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p--~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
++.|.||+++..|.. .|+|.|+++|++|.+.++..|.++ +|+|| +|+..+.||+ +++..+|+.+++.+
T Consensus 184 ~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv-------~i~pk-~hv~~l~~~s--dee~~~lA~ilk~~ 253 (338)
T COG1085 184 NGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEV-------LIYPK-EHVSFLTDLS--DEELKDLAEILKKL 253 (338)
T ss_pred cCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEE-------EeccH-HHhhhhhhCC--HHHHHHHHHHHHHH
Confidence 578999999988754 699999999999999999999999 99999 9999999999 99999999999999
Q ss_pred HHHHHHHcCCC-ceeEEEecCCCC-CCccceEEEEEec---cCCCCCCCcccc-ccCCCCCChHHHHHHHHHHHHHHHhh
Q 028160 126 SNAIMKATDAD-SFNLLVNNGAAA-GQVIFHTHIHIIP---RKAHDCLWTSES-LRRRPLKIDQETSQLADQVREKLSNI 199 (212)
Q Consensus 126 ~~~l~~~~~~~-~~ni~~n~g~~a-gq~v~HlHiHIIP---R~~~d~~w~~~~-~~~~~~~~~~e~~~la~~lr~al~~~ 199 (212)
..+..+.++.. .|+++++..+.. .+.-+|+|+|++| |..+-.-|..+. +......-+...+++|++||+++.++
T Consensus 254 ~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~~g~e~~~~e~~~~~~pEeaA~~LR~~~~~~ 333 (338)
T COG1085 254 LARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFLAGYEMGAGEFIRDVTPEEAAERLRERSAEI 333 (338)
T ss_pred HHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcccccccccccceeeeeecccceeeccCCHHHHHHHHHHhhhcc
Confidence 99999999876 799999876653 3567999999999 665543222221 11111111345688899999988654
No 18
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.43 E-value=9.8e-13 Score=105.54 Aligned_cols=115 Identities=19% Similarity=0.328 Sum_probs=81.0
Q ss_pred cchhhhhhhccCCccCCCCCCCcccccccCCC--CceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCccccccccc
Q 028160 30 SASFCAQQRLSHSQESGHENDCVFCKIIRGES--PAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKE 107 (212)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~--p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~d 107 (212)
+.+.|+..-.+ ...+..|.||+|..+.. +.....|++.+++|-|+.|.+.-|. |+||| +|+.+..+
T Consensus 16 si~~c~~~e~~----~~~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HY-------LvipK-~Hi~~~~~ 83 (166)
T KOG4359|consen 16 SVGTCEAAEKS----PEPKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHY-------LVVPK-KHIGNCRT 83 (166)
T ss_pred EEeeeeccccc----cCCCCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceE-------EEech-HHcCChhh
Confidence 56788766442 23346899999987543 3355689999999999999999999 99999 99999999
Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHc--CCCceeEEEecCCCCCCccceEEEEEec
Q 028160 108 LPFQN-EVVAAMCAKVPLISNAIMKAT--DADSFNLLVNNGAAAGQVIFHTHIHIIP 161 (212)
Q Consensus 108 L~~~~-ee~~~l~~~~~~v~~~l~~~~--~~~~~ni~~n~g~~agq~v~HlHiHIIP 161 (212)
|+.++ +.+.+++...+.+. ++.. +.+-..++++- ...-+|.|+|+|+|-
T Consensus 84 L~k~~V~Lve~m~~~G~~~l---~r~~~td~~~~r~GFHL--PPf~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 84 LRKDQVELVENMVTVGKTIL---ERNNFTDFTNVRMGFHL--PPFCSVSHLHLHVIA 135 (166)
T ss_pred cchhhHHHHHHHHHHHHHHH---HHhccCCchheeEeccC--CCcceeeeeeEeeec
Confidence 99322 22333444444332 3332 33345566654 457899999999993
No 19
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.11 E-value=1.6e-10 Score=102.73 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=100.1
Q ss_pred CCCCcccccccCC--CCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGE--SPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 48 ~~~C~FC~ii~~e--~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
.+.|.+-+..+-| .+.++|.|+++|+++.+++...|+.+ ||||| +|+.+|.+|+ +.+..+|+.+++.+
T Consensus 198 hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEt-------llipk-~h~~~~~~l~--~~~k~dLasiLK~l 267 (354)
T KOG2958|consen 198 HGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFET-------LLIPK-RHVSRFHELD--EVEKVDLASILKLL 267 (354)
T ss_pred cCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCccee-------eeech-hhhhhhcccc--hHHHhhHHHHHHHH
Confidence 4678884444433 25699999999999999999999999 99999 9999999999 99999999999999
Q ss_pred HHHHHHHcCC-CceeEEEecCCCCC---CccceE-EEEEec---cCCCCCCCcccc-ccCCCCCChHHHHHHHHHHHHH
Q 028160 126 SNAIMKATDA-DSFNLLVNNGAAAG---QVIFHT-HIHIIP---RKAHDCLWTSES-LRRRPLKIDQETSQLADQVREK 195 (212)
Q Consensus 126 ~~~l~~~~~~-~~~ni~~n~g~~ag---q~v~Hl-HiHIIP---R~~~d~~w~~~~-~~~~~~~~~~e~~~la~~lr~a 195 (212)
.....+.+.. ..|+++++..|..+ ..-.|| |+|..| |.++-.-|-.+. ....|.- |-.-++.|++||+.
T Consensus 268 l~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFyppllrsatV~kF~vG~e~l~epqr-dltpEqaAk~lrel 345 (354)
T KOG2958|consen 268 LIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPPLLRSATVRKFLVGYEMLAEPQR-DLTPEQAAKRLREL 345 (354)
T ss_pred HHHHHHhhccCCccccccccCCcccccccccchhhhhhccccchhhccccceeechhhhcCccc-cCCHHHHHHHHHhc
Confidence 9999999987 58999998877532 223454 888876 444433333221 1111110 22346667777753
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.91 E-value=3.7e-08 Score=77.71 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=76.4
Q ss_pred CCCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHH
Q 028160 45 SGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPL 124 (212)
Q Consensus 45 ~~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~ 124 (212)
....++|+||--...-....||.-++.+++.++..|..+||+ +|||- .|+.++.+++ ++++.+|....+.
T Consensus 7 ~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~-------lIvPi-~H~~s~~~~d--e~~~~Ei~~f~~~ 76 (121)
T PF04677_consen 7 NKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHC-------LIVPI-QHVPSLTELD--EEVWEEIRNFQKS 76 (121)
T ss_pred CCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEE-------EEEec-ceecccccCC--HHHHHHHHHHHHH
Confidence 455678999975433335678899999999999999999999 99999 9999999999 9888888776555
Q ss_pred HHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccC
Q 028160 125 ISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRK 163 (212)
Q Consensus 125 v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~ 163 (212)
+.+...+ .|.+ . +.+-+ +.....|+|+++||-.
T Consensus 77 L~~mf~~-~~~~-v-vf~E~---~~~~~~H~~iq~vPvp 109 (121)
T PF04677_consen 77 LRKMFAS-QGKD-V-VFFER---VRKRNPHTHIQCVPVP 109 (121)
T ss_pred HHHHHHH-cCCC-E-EEEEE---eCCCCcEEEEEEEEcC
Confidence 5444333 3432 1 22211 1345689999999853
No 21
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.00012 Score=69.13 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
...+.|+||--...-....||.-+++|++-++.+|.+.||+ ||||- .|++++..|+ ++.+.+|-.--. .
T Consensus 316 ~~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~Hv-------lIipi-~H~p~~~~ls--~ev~~Ei~kyka-a 384 (528)
T KOG2476|consen 316 IPPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHV-------LIIPI-EHIPSLVPLS--AEVTQEINKYKA-A 384 (528)
T ss_pred CCCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeE-------EEEEc-ccccccccCC--HHHHHHHHHHHH-H
Confidence 34578999986655455689999999999999999999999 99999 9999999999 877666544322 2
Q ss_pred HHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCC
Q 028160 126 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKA 164 (212)
Q Consensus 126 ~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~ 164 (212)
.+.+-+..|.+-.-+-. ..--.-|+|+.+||--.
T Consensus 385 l~~myk~~g~~~vvfE~-----~~~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 385 LRKMYKKQGKDAVVFER-----QSYRSVHLQLQVIPVPK 418 (528)
T ss_pred HHHHHHhcCCeEEEEEe-----ecccceeeEEEEEeccc
Confidence 22333334443222211 01123599999998654
No 22
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=97.49 E-value=0.0001 Score=61.12 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=58.3
Q ss_pred CceEEEEC-CeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCC----
Q 028160 62 PAVKLYEY-DTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDAD---- 136 (212)
Q Consensus 62 p~~iv~e~-d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~---- 136 (212)
|..++.++ |.++++.|.+|.+..|. ||+||..-+.++.+.. .+.+ .+......+...+.+.++..
T Consensus 14 ~e~V~~es~d~vvvIrD~fPKa~~H~-------LvLpr~s~i~~l~~~~--qe~l-~ll~~~h~~~~~~v~~~~~~~~~~ 83 (184)
T KOG0562|consen 14 PENVYIESPDDVVVIRDKFPKARMHL-------LVLPRRSSIDSLFSVV--QEHL-SLLKEDHAVGPCWVDQLTNEALCN 83 (184)
T ss_pred cceeeccCcccEEEEcccCccceeEE-------EEecccchhHHHHHHH--HHHh-hHhHHHhhcCchHHHHhcchhhhh
Confidence 34455555 89999999999999999 9999635555555554 3332 33444444553444444433
Q ss_pred ceeEEEecCCCCCCccceEEEEEeccC
Q 028160 137 SFNLLVNNGAAAGQVIFHTHIHIIPRK 163 (212)
Q Consensus 137 ~~ni~~n~g~~agq~v~HlHiHIIPR~ 163 (212)
.|++++ .++.++.++|+|||...
T Consensus 84 ~f~vG~----HavPSM~~LHLHVISkD 106 (184)
T KOG0562|consen 84 YFRVGF----HAVPSMNNLHLHVISKD 106 (184)
T ss_pred heeeee----ccCcchhheeEEEeecc
Confidence 355555 56778999999999653
No 23
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=96.95 E-value=0.0035 Score=56.91 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=46.7
Q ss_pred EEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEe
Q 028160 93 VAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 93 ~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
|+|... +|..++.+++ .+++..++.....-...+.+--+..-+.+..|.|+.+|.++.|-|..|+
T Consensus 96 Vii~sp-~H~~~l~~~~--~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~ 160 (329)
T cd00608 96 VICFSP-DHNLTLAEMS--VAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIW 160 (329)
T ss_pred EEEECC-cccCChhhCC--HHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeee
Confidence 367777 8999999999 8887777666555444443211222234566999999999999999986
No 24
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0059 Score=58.59 Aligned_cols=104 Identities=17% Similarity=0.130 Sum_probs=70.4
Q ss_pred CCCCcccccccCCCCceEEEECCeEEEEEcC-CCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDT-NPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS 126 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~-~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~ 126 (212)
-++|.||--...-....+|.-....++.++. .++..||+ +|+|- .|..+...|+ ++++.++....+-++
T Consensus 406 lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHc-------iIvpt-qH~~~t~slD--EdvWDEIrnfrKcL~ 475 (628)
T KOG2477|consen 406 LDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHC-------IIVPT-QHRINTLSLD--EDVWDEIRNFRKCLA 475 (628)
T ss_pred hhhchhhhcccccccceeEEeccceeEeccccCccccCce-------EEecc-cccccccccc--hHHHHHHHHHHHHHH
Confidence 4689999755444445677777777777665 45689999 99999 9999999999 888887766555443
Q ss_pred HHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCC
Q 028160 127 NAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAH 165 (212)
Q Consensus 127 ~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~ 165 (212)
. +-...+.+- +|-.....-+.-+|+-||.||-...
T Consensus 476 ~-Mfas~n~dv---iFyE~a~~l~rrpH~~IeCIPvpqe 510 (628)
T KOG2477|consen 476 L-MFASMNLDV---IFYENAPSLQRRPHTAIECIPVPQE 510 (628)
T ss_pred H-HHHhcCCCe---EEEeccCccccCCceeEEEeechHH
Confidence 2 323333332 2211112335579999999996543
No 25
>PLN02643 ADP-glucose phosphorylase
Probab=96.63 E-value=0.015 Score=53.27 Aligned_cols=65 Identities=23% Similarity=0.302 Sum_probs=46.3
Q ss_pred EEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEe
Q 028160 93 VAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 93 ~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
|+|-.- +|..++.+|+ .+++..+..+.+.-...|.+.-+..-+.+.-|.|+.+|.+..|-|..|+
T Consensus 110 Vii~sp-~H~~~l~~~~--~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~ 174 (336)
T PLN02643 110 VVIETP-VHSVQLSDLP--ARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQII 174 (336)
T ss_pred EEEeCC-ccCCChHHCC--HHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeE
Confidence 366666 8999999999 8888777766554444333221222234566999999999999999987
No 26
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.023 Score=50.86 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=65.4
Q ss_pred CceEEEECC----eEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-
Q 028160 62 PAVKLYEYD----TCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDAD- 136 (212)
Q Consensus 62 p~~iv~e~d----~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~- 136 (212)
..++|||+. .|+++.|..- .|-.-..|-++.|+-+ +-+.++.||. ++.+.-|..+-.++..++.+.+|.+
T Consensus 159 ~driV~ed~d~~nGFillPDlKW--dgqtld~LyllaIvhr-~dikSiRDL~--~~h~~lL~n~r~k~~~~i~~~y~v~~ 233 (310)
T KOG3969|consen 159 DDRIVYEDPDPENGFILLPDLKW--DGQTLDSLYLLAIVHR-RDIKSIRDLR--PSHLQLLRNIRNKSREAIPQRYGVDP 233 (310)
T ss_pred ccceEEecCCCcCCeEEcccccc--CcccccceeEEEEEec-CCcchhhhCC--HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 458888754 4566655532 2222222333356666 8999999999 9888888888888888998888754
Q ss_pred -ceeEEEecCCCCCCccceEEEEEeccC
Q 028160 137 -SFNLLVNNGAAAGQVIFHTHIHIIPRK 163 (212)
Q Consensus 137 -~~ni~~n~g~~agq~v~HlHiHIIPR~ 163 (212)
-..+.++.- .+.+|+|+||++-.
T Consensus 234 dqlrmf~HYq----PSyYHlHVHi~nik 257 (310)
T KOG3969|consen 234 DQLRMFFHYQ----PSYYHLHVHIVNIK 257 (310)
T ss_pred hhEEEEEEec----CceEEEEEEEEecc
Confidence 467777643 46799999999853
No 27
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=96.19 E-value=0.026 Score=51.90 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=49.2
Q ss_pred EEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEe
Q 028160 94 AIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 94 lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
+|-.. .|-.++.+|+ .+++.++..+.+...+.|.+.-...-+.+..|.|..+|.+.+|-|..|+
T Consensus 98 Ivesp-~H~~~l~~~~--~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~ 161 (338)
T COG1085 98 IVESP-DHSKTLPELP--VEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIV 161 (338)
T ss_pred EEECC-cccCccccCC--HHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCccee
Confidence 44566 8999999999 8888887777776666655544333456677999999999999999886
No 28
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=96.14 E-value=0.014 Score=54.69 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCCCceeeeeeeeeEEEEeCc-ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCC
Q 028160 69 YDTCLCILDTNPLSLGRFRLRLVVVAIISLS-SIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAA 147 (212)
Q Consensus 69 ~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~-rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~ 147 (212)
+...+++.+..|..+||+ ++||+. .|.+.. |+ .+-+ .++-.+....+.++|.+++|. .-
T Consensus 168 ~s~~~VlINvsPI~~gH~-------LlvP~~~~~lPQ~--i~--~~~l--------~la~~~a~~~~~p~frvgYNS-lG 227 (403)
T PLN03103 168 NSPNVVAINVSPIEYGHV-------LLVPRVLDCLPQR--ID--PDSF--------LLALYMAAEANNPYFRVGYNS-LG 227 (403)
T ss_pred CCccEEEEeCCCCccCeE-------EEcCCcccCCCeE--ec--HHHH--------HHHHHHHHhcCCCcEEEEecC-Cc
Confidence 444588999999999999 999983 343332 33 3211 122223333455678988875 44
Q ss_pred CCCccceEEEEEec
Q 028160 148 AGQVIFHTHIHIIP 161 (212)
Q Consensus 148 agq~v~HlHiHIIP 161 (212)
++.++.|+|+|..-
T Consensus 228 A~ASvNHLHFQa~y 241 (403)
T PLN03103 228 AFATINHLHFQAYY 241 (403)
T ss_pred cccCcceeeeeecc
Confidence 55699999999874
No 29
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=95.71 E-value=0.056 Score=49.70 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=48.1
Q ss_pred EEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEe
Q 028160 93 VAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 93 ~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
|+|-.. +|..+|.+|+ .+++..+..+.+.-...|.+. ..-+.+.-|.|+.+|.+..|-|..|+
T Consensus 108 Viv~sp-~H~~~l~~~~--~~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~ 170 (346)
T PRK11720 108 VICFSP-DHSKTLPELS--VAALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIW 170 (346)
T ss_pred EEEECC-CcCCChhHCC--HHHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeee
Confidence 366677 8999999999 998888777766665555543 22234455999999999999999986
No 30
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=95.31 E-value=0.13 Score=47.39 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=46.7
Q ss_pred EEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEe
Q 028160 94 AIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 94 lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
+|-.- +|-.++.+|+ .+++..+..+.+.-...|.+ +..-+.+.-|.|..+|.+.+|-|-.|+
T Consensus 109 ii~sp-~H~~~l~~m~--~~~i~~v~~~~~~r~~~l~~--~i~yv~iF~N~G~~~GaSl~HPH~Qi~ 170 (347)
T TIGR00209 109 ICFSP-DHSKTLPELS--VAALTEIVKTWQEQTAELGK--TYPWVQIFENKGAAMGCSNPHPHGQIW 170 (347)
T ss_pred EEeCC-CccCChhHCC--HHHHHHHHHHHHHHHHHHHh--CCcEEEEEeecCcccCcCCCCCceeee
Confidence 56666 8999999999 99888877777666555552 122233455999999999999999986
No 31
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=94.81 E-value=0.025 Score=52.12 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=44.0
Q ss_pred EEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCCCCcc
Q 028160 73 LCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVI 152 (212)
Q Consensus 73 ~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v 152 (212)
+|..+..|...||+ ||||++ -.-....++ - .+-.++-.++...+.+.|.+++|. .-+..+|
T Consensus 169 vvaIN~sPie~~H~-------LiiP~V-~kc~pQrit--~--------~al~lav~~m~~~dd~~frlgyNS-lga~AsV 229 (431)
T KOG2720|consen 169 VVAINVSPIEYGHV-------LIIPRV-LKCLPQRIT--H--------KALLLAVTMMAEADDPYFRLGYNS-LGAFASV 229 (431)
T ss_pred eEEEecCccccCcE-------EEecch-hccCcceee--H--------HHHHHHHHHHHhcCCchhheeccc-chhhhhh
Confidence 77888999999999 999992 111111222 1 111233344444555667888764 3356799
Q ss_pred ceEEEEEe
Q 028160 153 FHTHIHII 160 (212)
Q Consensus 153 ~HlHiHII 160 (212)
.|+|+|..
T Consensus 230 NHLHfha~ 237 (431)
T KOG2720|consen 230 NHLHFHAY 237 (431)
T ss_pred hhhhhhhh
Confidence 99999986
No 32
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.04 Score=48.68 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=50.9
Q ss_pred CCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCC
Q 028160 69 YDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAA 148 (212)
Q Consensus 69 ~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~a 148 (212)
++...++++..|..+.|+ |||.+ +--..-+-|+ ..++..+.. -..+.++ -+.+|.|+.+
T Consensus 91 s~th~~llNKF~VVdeHl-------LiVTr-efedQ~s~LT--l~Df~ta~~----------vL~~ldg-lvFYNsGp~a 149 (298)
T COG4360 91 SDTHKLLLNKFPVVDEHL-------LIVTR-EFEDQESALT--LADFTTAYA----------VLCGLDG-LVFYNSGPIA 149 (298)
T ss_pred chhHhhhhhcCCccccee-------EEeeh-hhhhccccCC--HHHHHHHHH----------HHhcccc-eEEecCCCCc
Confidence 345567889999999999 99999 5444444466 444332221 1223455 3567999999
Q ss_pred CCccceEEEEEecc
Q 028160 149 GQVIFHTHIHIIPR 162 (212)
Q Consensus 149 gq~v~HlHiHIIPR 162 (212)
|.+.+|=|+.|+|-
T Consensus 150 GaSq~HkHLQi~pm 163 (298)
T COG4360 150 GASQDHKHLQIVPM 163 (298)
T ss_pred CcCCCccceeEeec
Confidence 99999999999974
No 33
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=94.09 E-value=0.25 Score=43.78 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=61.3
Q ss_pred CCCcccccccCC-CCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHH
Q 028160 49 NDCVFCKIIRGE-SPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISN 127 (212)
Q Consensus 49 ~~C~FC~ii~~e-~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~ 127 (212)
+.|+.-.-.++. .|-..|.....++++-|.. -|.|. |+||- .-++-+.+=.-....--.++..++....
T Consensus 40 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD~~--Gp~qy-------LLiPt-~rIsGIEsP~Ll~~~tpnyf~~AW~aR~ 109 (252)
T PRK05471 40 EQCLPNQQQNQNPAPCAEVDPQAGYVLLKDRN--GPLQY-------LLMPT-YRISGIESPLLLEPSTPNYFALAWQARD 109 (252)
T ss_pred hhcCCchhccCCCCCCeeEccCCCeEEEecCC--CCcce-------EEeec-ccccCccCccccCCCCccHHHHHHHHhH
Confidence 446555444333 2444555567777777544 67888 99999 7777665411001111245556666666
Q ss_pred HHHHHcCC----CceeEEEecCCCCCCccceEEEEEe
Q 028160 128 AIMKATDA----DSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 128 ~l~~~~~~----~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
.+.+.+|. +.+.+.+|. ..|-+-.|+||||=
T Consensus 110 ~v~~~~g~pipd~~lsLaINS--~~gRSQnQLHIHIs 144 (252)
T PRK05471 110 FMSKKYGKPIPDSAVSLAINS--RYGRTQDQLHIHIS 144 (252)
T ss_pred HHHHhhCCCCChhheEEEecC--CCCccccceeeehh
Confidence 66666653 347777774 56888899999995
No 34
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=93.83 E-value=0.24 Score=43.79 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=62.2
Q ss_pred CCCcccccccCC-CCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCccccccccc--CCCCHHHHHHHHHHHHHH
Q 028160 49 NDCVFCKIIRGE-SPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKE--LPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 49 ~~C~FC~ii~~e-~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~d--L~~~~ee~~~l~~~~~~v 125 (212)
+.|+.-.-.+|. .|-..|.....++++-|. .-|.|. |+||- .-++-+.+ |- ...--.++..++..
T Consensus 39 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD~--~Gp~qy-------LLmPt-~rIsGIEsP~Ll--~~~tpnyf~~AW~a 106 (250)
T TIGR00672 39 EECLPNQQQNQNPSPCAEVKPNAGYVVLKDL--NGPLQY-------LLMPT-YRINGTESPLLL--DPSTPNFFWLAWQA 106 (250)
T ss_pred hhcCCchhccCCCCCcceEcCCCCeEEEeCC--CCCcee-------EEeec-cccCCccChhhc--CCCCccHHHHHHHH
Confidence 445555444333 244455556777888777 467898 99999 77776654 11 11122355566666
Q ss_pred HHHHHHHcCC----CceeEEEecCCCCCCccceEEEEEe
Q 028160 126 SNAIMKATDA----DSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 126 ~~~l~~~~~~----~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
...+.+.+|. +.+.+.+|. ..|-+-.|+||||=
T Consensus 107 R~~v~~~~g~pipd~~lsLaINS--~~gRSQnQLHIHIs 143 (250)
T TIGR00672 107 RDFMSKKYGQPIPDRAVSLAINS--RTGRSQNHFHIHIS 143 (250)
T ss_pred hHHHHHhcCCCCChhheeEEecC--CCCcccccceeeHh
Confidence 6666667664 246777774 56888899999994
No 35
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=91.52 E-value=0.88 Score=39.53 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=49.9
Q ss_pred eEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCC----cee
Q 028160 64 VKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDAD----SFN 139 (212)
Q Consensus 64 ~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~----~~n 139 (212)
-.|-+.-.++++-|.+- |... |++|. -++..+.+---.+.---.+...++....-+.+.+|.+ ++.
T Consensus 56 aeV~~~AG~av~Kd~~g--PlQy-------LLmPt-~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvs 125 (252)
T COG2134 56 AEVKPQAGYAVLKDRNG--PLQY-------LLMPT-ARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVS 125 (252)
T ss_pred eeecCCCceEEEeccCC--Ccee-------Eeeee-ecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceE
Confidence 33444445566666553 4455 99999 7777665411001101124445555555566667642 466
Q ss_pred EEEecCCCCCCccceEEEEEec
Q 028160 140 LLVNNGAAAGQVIFHTHIHIIP 161 (212)
Q Consensus 140 i~~n~g~~agq~v~HlHiHIIP 161 (212)
+.+| +..|-+-.|+||||--
T Consensus 126 LaIN--s~~gRtQdqlHIHISC 145 (252)
T COG2134 126 LAIN--SKNGRTQDQLHIHISC 145 (252)
T ss_pred EEec--CccCccccceEEEEEe
Confidence 6666 4568888999999963
No 36
>PF13395 HNH_4: HNH endonuclease
Probab=91.00 E-value=0.16 Score=34.27 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=28.3
Q ss_pred EEeecccCCCCCCCCCCCCc--cchhhhhhhccCC
Q 028160 10 VLSSHLLPTGPAPCSSSSGV--SASFCAQQRLSHS 42 (212)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 42 (212)
...+||+|.+.+..++..|+ .|..||..|.++.
T Consensus 18 ~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~~k~ 52 (54)
T PF13395_consen 18 YEIDHIIPRSRGGDDSFWNLVLCCKECNRSKGNKT 52 (54)
T ss_pred ceeEEEecccccCCCCcchhheECHHHhhcccccC
Confidence 57899999999999999998 7888988877543
No 37
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=90.88 E-value=0.64 Score=40.48 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=39.7
Q ss_pred EEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCceeEE
Q 028160 66 LYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATD----ADSFNLL 141 (212)
Q Consensus 66 v~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~----~~~~ni~ 141 (212)
|-....++++-| +.-+.|+ |+||- .-++-+.+=.=....--.++..++.....+.+.+| .+.+.+.
T Consensus 29 Vd~~~gyvvlKd--~~G~~qy-------LL~Pt-~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLa 98 (222)
T PF02611_consen 29 VDLQQGYVVLKD--RNGPLQY-------LLMPT-DRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLA 98 (222)
T ss_dssp EETTTTEEEEE---SSSSS-E-------EEEES-S---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEE
T ss_pred EcCCCCEEEEeC--CCCCccE-------EEeec-cccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEE
Confidence 334556666665 4457899 99999 76776654110011112344445543344444444 3467888
Q ss_pred EecCCCCCCccceEEEEEe
Q 028160 142 VNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 142 ~n~g~~agq~v~HlHiHII 160 (212)
+|. ..|-+-.|+||||=
T Consensus 99 INS--~~gRsQdQLHIHis 115 (222)
T PF02611_consen 99 INS--QYGRSQDQLHIHIS 115 (222)
T ss_dssp EB---GGG-S--S--EEEE
T ss_pred ecC--ccCccccceEeEhh
Confidence 885 45778899999995
No 38
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=0.79 Score=40.69 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCceEEEECCeE----EEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 028160 61 SPAVKLYEYDTC----LCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDAD 136 (212)
Q Consensus 61 ~p~~iv~e~d~~----~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~ 136 (212)
...+|+||++.. +++.|..- .|-+--.|-.+.|+-+ .-+.++.||. ...+.-+..+-.++...+...++.+
T Consensus 153 e~erivyed~~~~ngfiiiPD~KW--d~qt~dsL~l~aIv~~-~diktiRDlr--~~~i~~l~rl~~kiltevp~~f~vd 227 (305)
T COG5075 153 ENERIVYEDESVINGFIIIPDMKW--DGQTVDSLYLVAIVYR-TDIKTIRDLR--YYHILWLIRLNNKILTEVPYQFGVD 227 (305)
T ss_pred ccceeEecCcccccCceecccccc--CccceeeeeEEEEEec-CCchhhhhCc--hhhhhHHHhhcccceEecchhcCcC
Confidence 346899988764 34544421 1111111112245555 7789999998 7666555555555555455455543
Q ss_pred --ceeEEEecCCCCCCccceEEEEEec
Q 028160 137 --SFNLLVNNGAAAGQVIFHTHIHIIP 161 (212)
Q Consensus 137 --~~ni~~n~g~~agq~v~HlHiHIIP 161 (212)
...+.++.. .+.+|+|+||+-
T Consensus 228 ~n~l~mfvHY~----PsYyhlHvHI~n 250 (305)
T COG5075 228 PNELRMFVHYQ----PSYYHLHVHIVN 250 (305)
T ss_pred hhHeEEEEEec----cceEEEEEEEEe
Confidence 355666543 467999999984
No 39
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=88.52 E-value=1.4 Score=40.17 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=36.0
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE---ecCCCCCCccceEEEEE
Q 028160 100 SIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLV---NNGAAAGQVIFHTHIHI 159 (212)
Q Consensus 100 rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~---n~g~~agq~v~HlHiHI 159 (212)
-|--+|.+++ ..++.++.+.-+.+...|.+ .++|++++ |.|...|.+.+|-|-.+
T Consensus 117 nh~ltLp~m~--~~~i~~vv~aw~~~~~~l~~---h~~y~yvQIFeNkGa~mGcSn~HpHgQ~ 174 (354)
T KOG2958|consen 117 NHNLTLPLMD--VVEIRDVVDAWKKLYNELGQ---HDSYKYVQIFENKGAAMGCSNPHPHGQA 174 (354)
T ss_pred ccccccccCC--HHHHHHHHHHHHHHHHHhcc---cCCcceeeeeccCCcccccCCCCcccce
Confidence 3455567777 77776665555544433332 45676644 88999999999988654
No 40
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=88.35 E-value=0.98 Score=37.62 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=35.9
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--ce-eEEEecCCCCCCccceEEEEEec
Q 028160 100 SIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDAD--SF-NLLVNNGAAAGQVIFHTHIHIIP 161 (212)
Q Consensus 100 rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~--~~-ni~~n~g~~agq~v~HlHiHIIP 161 (212)
+|-.++.+|+ .++...++.+.+ .+..+..... .| .+.-|.|..+|.+..|-|-.|+-
T Consensus 119 ~h~~~~~~~~--~~~~~~i~~a~~---~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 119 KHERTLADMS--VKEIKEILKAWR---DRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp STT--GGGS---HHHHHHHHHHHH---HHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred CCCCChhhCC--HHHHHHHHHHHH---HHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 6889999999 887766655544 3344433322 33 34559999999999999998874
No 41
>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]. This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.
Probab=86.69 E-value=0.46 Score=30.12 Aligned_cols=32 Identities=9% Similarity=0.253 Sum_probs=24.1
Q ss_pred eeEEeecccCCCCCCCCCCCCc--cchhhhhhhc
Q 028160 8 LAVLSSHLLPTGPAPCSSSSGV--SASFCAQQRL 39 (212)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 39 (212)
..+.++|+.|...++-.+..|+ +|..|+..+-
T Consensus 12 ~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k~ 45 (47)
T PF01844_consen 12 ESLHVHHIIPRSKGGKNDLENLILLCPSCHRKKH 45 (47)
T ss_dssp -GEEEEESS-TTTT---STTTEEEEEHHHHHHHH
T ss_pred cceEeECcCchhcCCCCCHHHHHHHhHHHHHHhc
Confidence 4689999999999999999998 9999987754
No 42
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=85.76 E-value=10 Score=31.88 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=53.4
Q ss_pred EEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-ceeEEEecCCCCCCccceEEEEEeccCCCCCCCccc
Q 028160 94 AIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDAD-SFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSE 172 (212)
Q Consensus 94 lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~-~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~ 172 (212)
+||.- .+ .-+.+++ .++..++.+ .....+.+.+|.+ -++..++.. .+.||+|+-+||...+..+....
T Consensus 83 ~iit~-~~-e~~~~~~--~e~~~~~~~---~~~~~~~~r~g~~ni~~a~vH~D----E~tPH~H~~~vP~~~~~rl~~k~ 151 (196)
T PF01076_consen 83 FIITA-SP-EFFNDLD--PEQQKRWFE---DSLEWLQERYGNENIVSAVVHLD----ETTPHMHFDVVPIDEDGRLSAKR 151 (196)
T ss_pred EEEeC-Ch-HHhcchh--hHHHHHHHH---HHHHHHHHHCCchhEEEEEEECC----CCCcceEEEEeecccccccchhh
Confidence 66655 22 2235566 665554444 4567788889854 366666643 45899999999988765332111
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhh
Q 028160 173 SLRRRPLKIDQETSQLADQVREKLSNI 199 (212)
Q Consensus 173 ~~~~~~~~~~~e~~~la~~lr~al~~~ 199 (212)
.+. ...++.++.+.+.+.+...
T Consensus 152 ~~~-----~~~~l~~~q~~~~~~~~~~ 173 (196)
T PF01076_consen 152 LFG-----GKKELSELQDEYAEEVSEK 173 (196)
T ss_pred hhh-----HHHHHHHHHHHHHHHHHhh
Confidence 111 1346666666666666543
No 43
>PRK11295 hypothetical protein; Provisional
Probab=83.98 E-value=0.53 Score=36.94 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=29.3
Q ss_pred CcceeeEEeecccCCCCCCCCCCCCc--cchhhhhhhc
Q 028160 4 PKRRLAVLSSHLLPTGPAPCSSSSGV--SASFCAQQRL 39 (212)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 39 (212)
+....|++|+|++|..++.-++.+|+ +|..|+..+-
T Consensus 36 ~a~~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~kh 73 (113)
T PRK11295 36 YSNLRELTVHHIDHDHDNNPEDGSNWELLCLYCHDHEH 73 (113)
T ss_pred cCCCCCceeeccCCCCCCCCCchhHHHHHhHHHHhHHH
Confidence 33446899999999887877788998 9999988753
No 44
>smart00507 HNHc HNH nucleases.
Probab=79.64 E-value=1.2 Score=27.85 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=23.5
Q ss_pred eEEeecccCCCCCCCCCCCCc--cchhhh
Q 028160 9 AVLSSHLLPTGPAPCSSSSGV--SASFCA 35 (212)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 35 (212)
++.++|+.|...++..+.+|+ +|..|+
T Consensus 23 ~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch 51 (52)
T smart00507 23 GLEVDHIIPLSDGGNDDLDNLVLLCPKCH 51 (52)
T ss_pred CeEEEecCChhcCCCCChHhCeecChhhC
Confidence 689999999999988888888 888885
No 45
>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.
Probab=74.89 E-value=1 Score=28.78 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=25.6
Q ss_pred eeEEeecccCCCCCCCCCCCCc--cchhhhhh
Q 028160 8 LAVLSSHLLPTGPAPCSSSSGV--SASFCAQQ 37 (212)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 37 (212)
-.+.++|+.|...++..+.+|+ +|..|+..
T Consensus 24 ~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~ 55 (57)
T cd00085 24 EGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRK 55 (57)
T ss_pred CCceEEeecchhhCCCCchHHhHHHHHHHhhc
Confidence 4678999999999999988888 88888754
No 46
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=59.94 E-value=16 Score=30.71 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCceeE--EEecCCCCCCccceEEEEEe-ccCCCC
Q 028160 124 LISNAIMKATDADSFNL--LVNNGAAAGQVIFHTHIHII-PRKAHD 166 (212)
Q Consensus 124 ~v~~~l~~~~~~~~~ni--~~n~g~~agq~v~HlHiHII-PR~~~d 166 (212)
.++..+.+.++++.+.+ +.+. .-.|.|+||+ +|..-+
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~~H~------D~~h~H~Hivin~v~~~ 115 (242)
T PF03432_consen 76 EIAREFAEEMGPGNHQYVVVVHT------DTDHPHVHIVINRVDLD 115 (242)
T ss_pred HHHHHHHHHcCCCCcceEEEECC------CcCeeeeeEEEeecccc
Confidence 34444555666654444 4442 2469999987 555443
No 47
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=48.03 E-value=1.5e+02 Score=28.87 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=80.5
Q ss_pred CCCCCcccccccCCC-----C----ceEE---EECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHH
Q 028160 47 HENDCVFCKIIRGES-----P----AVKL---YEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEV 114 (212)
Q Consensus 47 ~~~~C~FC~ii~~e~-----p----~~iv---~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee 114 (212)
....|..|.-..|-. | -|+| ..++.|..-...+.++.-|+ +|+.. +|.+= .++ .+.
T Consensus 170 ~YP~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~-------Ivl~~-~H~PM--kI~--~~t 237 (493)
T PRK05270 170 SYPKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHC-------IVLSE-KHRPM--KIS--RKT 237 (493)
T ss_pred CCCcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheeccee-------EEecC-ccCcc--Eec--HHH
Confidence 346788888665532 2 2343 56788877777777789999 99999 99863 255 555
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCceeEEEecCCC--CCCccceEEE----EEeccCCCCC-----------------CCcc
Q 028160 115 VAAMCAKVPLISNAIMKATDADSFNLLVNNGAA--AGQVIFHTHI----HIIPRKAHDC-----------------LWTS 171 (212)
Q Consensus 115 ~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~--agq~v~HlHi----HIIPR~~~d~-----------------~w~~ 171 (212)
+..|++.+. .| +.|=++.|..-. +|.-..|=|+ |.+|-..... .||.
T Consensus 238 F~rLL~fv~--------~f--PhYFiGSNADLPIVGGSILsHdHyQgG~h~FpM~kA~i~~~f~~~~~p~V~agivkWPm 307 (493)
T PRK05270 238 FERLLDFVE--------QF--PHYFIGSNADLPIVGGSILSHDHYQGGRHTFPMAKAPIEEEFTLAGYPDVKAGIVKWPM 307 (493)
T ss_pred HHHHHHHHH--------hC--CccccccCCCCCcccccccccccccCCCcccccccCccceEEecCCCCcceEEEeeCcc
Confidence 555554443 22 344444443221 3444577776 5666433211 2776
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHhhhh
Q 028160 172 ESLRRRPLKIDQETSQLADQVREKLSNICE 201 (212)
Q Consensus 172 ~~~~~~~~~~~~e~~~la~~lr~al~~~~~ 201 (212)
.+.+-.-. ..+++.++|++|.++|..+.+
T Consensus 308 SviRL~~~-~~~~l~~~a~~Il~~Wr~YsD 336 (493)
T PRK05270 308 SVIRLTSK-NKDELIDAADKILEAWRGYSD 336 (493)
T ss_pred eEEEeecC-CHHHHHHHHHHHHHHHhCCCc
Confidence 65432221 267899999999999987765
No 48
>PF11296 DUF3097: Protein of unknown function (DUF3097); InterPro: IPR021447 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=47.53 E-value=12 Score=33.43 Aligned_cols=16 Identities=56% Similarity=0.926 Sum_probs=14.0
Q ss_pred CCcceeeEEeecccCC
Q 028160 3 TPKRRLAVLSSHLLPT 18 (212)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (212)
+|.||++||+||+.|-
T Consensus 156 ~p~RR~GVLvDHLV~G 171 (275)
T PF11296_consen 156 GPGRRLGVLVDHLVPG 171 (275)
T ss_pred CCCceeEeeeecccCC
Confidence 6889999999999874
No 49
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=42.15 E-value=7.8 Score=39.66 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=30.8
Q ss_pred eEEeecccCCCCCCCCCCCCc--cchhhhhhhccCCcc
Q 028160 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQRLSHSQE 44 (212)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 44 (212)
.+..||++|.+.++-++.+|+ .|..||..+..+.|.
T Consensus 601 ~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~~~tp~ 638 (805)
T TIGR01865 601 YYEIDHILPQSRSFDDSISNKVLVLASENQEKGDQTPY 638 (805)
T ss_pred CCceeeecccccCCCCcHHHHHHHhHHHHhhccCCCHH
Confidence 578999999999999999998 899999988864444
No 50
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=41.70 E-value=2e+02 Score=28.04 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=78.9
Q ss_pred CCCCcccccccCCC-----C----ceEE---EECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHH
Q 028160 48 ENDCVFCKIIRGES-----P----AVKL---YEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVV 115 (212)
Q Consensus 48 ~~~C~FC~ii~~e~-----p----~~iv---~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~ 115 (212)
-..|..|.-..|-. | -|+| ..++.|..-...+.++.-|+ +|+.. +|.+=- ++ .+.+
T Consensus 168 YPkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHc-------Ivl~~-~H~PMk--I~--~~tF 235 (489)
T TIGR01239 168 YPACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHS-------IVLKG-KHEPME--IS--KKTF 235 (489)
T ss_pred CCccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheeccee-------EEecC-ccCCcE--ec--HHHH
Confidence 34799998665532 2 2343 56788877777777789999 99999 998632 55 5555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEecCC-C-CCCccceEEE----EEeccCCCCC-----------------CCccc
Q 028160 116 AAMCAKVPLISNAIMKATDADSFNLLVNNGA-A-AGQVIFHTHI----HIIPRKAHDC-----------------LWTSE 172 (212)
Q Consensus 116 ~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~-~-agq~v~HlHi----HIIPR~~~d~-----------------~w~~~ 172 (212)
..|.+.+.. + +.|=++-|..- . +|.-..|=|+ |.+|--.... .||..
T Consensus 236 ~~Ll~fv~~--------f--PhYFiGSNADLPIVGGSILsHdHyQgG~h~FpM~kA~i~~~f~~~~~p~V~agivkWPmS 305 (489)
T TIGR01239 236 ERLLSFLGK--------F--PHYFIGSNADLPIVGGSILSHDHYQGGRHDFPMARAEAEEVYELNDYPDVSAGIVKWPMS 305 (489)
T ss_pred HHHHHHHHh--------C--CccccccCCCCCcccccccccccccCCCcccccccCCcceEEecCCCCcceEEEEeccce
Confidence 555444331 2 33444443222 1 2333467775 5565432211 27766
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhhhh
Q 028160 173 SLRRRPLKIDQETSQLADQVREKLSNICE 201 (212)
Q Consensus 173 ~~~~~~~~~~~e~~~la~~lr~al~~~~~ 201 (212)
+.+-.-. ..+++.++|++|.++|..+.+
T Consensus 306 viRL~~~-~~~~l~~~a~~Il~~Wr~YsD 333 (489)
T TIGR01239 306 VLRLQGE-DPGELAEAADHIFRTWQTYSD 333 (489)
T ss_pred EEEeccC-CHHHHHHHHHHHHHHHhCCCc
Confidence 5432222 256899999999999987765
No 51
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=37.63 E-value=83 Score=21.02 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 028160 182 DQETSQLADQVREKLSNICEC 202 (212)
Q Consensus 182 ~~e~~~la~~lr~al~~~~~~ 202 (212)
+++.+++++.|.+++.+....
T Consensus 14 ~EqK~~L~~~it~a~~~~~~~ 34 (60)
T PRK02289 14 QEQKNALAREVTEVVSRIAKA 34 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 678999999999998876654
No 52
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=35.36 E-value=3.3e+02 Score=26.24 Aligned_cols=133 Identities=16% Similarity=0.203 Sum_probs=77.1
Q ss_pred CCCCCCcccccccCC-----CCc----eE---EEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHH
Q 028160 46 GHENDCVFCKIIRGE-----SPA----VK---LYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNE 113 (212)
Q Consensus 46 ~~~~~C~FC~ii~~e-----~p~----~i---v~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~e 113 (212)
.+-..|+.|+-..|- .|+ || ...++.|..-...+..++-|+ +|..- +|++ -.++ ..
T Consensus 171 snYPkClLC~ENeGf~G~vNhPARqNhRIIp~~l~~e~W~fQySPY~YynEH~-------I~l~~-eH~p--M~Is--~~ 238 (503)
T COG4468 171 SNYPKCLLCKENEGFYGRVNHPARQNHRIIPVELNGEQWGFQYSPYVYYNEHC-------IILNG-EHRP--MKIS--RK 238 (503)
T ss_pred cCCcceeeeecccccccccCCcccccceeEEEEecCceeeEeeccceeeccee-------EEecC-Cccc--ceec--HH
Confidence 445679999866552 132 33 356778877666667789999 99988 9975 3355 44
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCceeEEEecCC-C-CCCccceEEE----EEeccCCCCC-----------------CCc
Q 028160 114 VVAAMCAKVPLISNAIMKATDADSFNLLVNNGA-A-AGQVIFHTHI----HIIPRKAHDC-----------------LWT 170 (212)
Q Consensus 114 e~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~-~-agq~v~HlHi----HIIPR~~~d~-----------------~w~ 170 (212)
.+..+...+. . -++|-++-|..- . +|.-..|=|. |.+|--.... .||
T Consensus 239 tFerlL~f~d--------q--fPhYfiGSNADLPIVGGSILsHDHyQgG~h~FpMakA~~eke~~~~~fp~V~aGiVKWP 308 (503)
T COG4468 239 TFERLLSFLD--------Q--FPHYFIGSNADLPIVGGSILSHDHYQGGRHEFPMAKAELEKEFSFKGFPDVSAGIVKWP 308 (503)
T ss_pred HHHHHHHHHH--------h--CCcccccCCCCCCcccceeccccccccccccccccccchhheeeecCCCccccceeecc
Confidence 4333332221 1 134444433221 1 3444466665 6677433211 277
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHhhhh
Q 028160 171 SESLRRRPLKIDQETSQLADQVREKLSNICE 201 (212)
Q Consensus 171 ~~~~~~~~~~~~~e~~~la~~lr~al~~~~~ 201 (212)
..+.+-.-.+ ..++-.+|+++-.+|..+.+
T Consensus 309 MSVlRL~s~n-k~~L~~lAd~il~~Wr~YSD 338 (503)
T COG4468 309 MSVLRLQSKN-KVELIKLADKILKKWREYSD 338 (503)
T ss_pred hhheeeccCC-HHHHHHHHHHHHHHHHHhcc
Confidence 6654322222 67899999999888876554
No 53
>COG1403 McrA Restriction endonuclease [Defense mechanisms]
Probab=34.86 E-value=12 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=27.2
Q ss_pred eEEeecccCCCCCCCCCCCCc--cchhhhhhhcc
Q 028160 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQRLS 40 (212)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 40 (212)
+...+|++|.+.++-+.-.|+ +|..|+..+.+
T Consensus 81 ~~~~dHiip~~~g~~~~~~Nl~~lc~~c~~~k~~ 114 (146)
T COG1403 81 DLEVDHIVPLSRGGASAWENLETLCERCHNKKGS 114 (146)
T ss_pred CCceeeEeecccCCcchHHHHHHHHHhhcccccc
Confidence 789999999998888777787 99999887664
No 54
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=32.52 E-value=1.2e+02 Score=25.11 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=24.9
Q ss_pred ccceEEEEEe-cc--CCCCCCCccc---c-ccCCCCCChHHHHHHHHHHHHHHH
Q 028160 151 VIFHTHIHII-PR--KAHDCLWTSE---S-LRRRPLKIDQETSQLADQVREKLS 197 (212)
Q Consensus 151 ~v~HlHiHII-PR--~~~d~~w~~~---~-~~~~~~~~~~e~~~la~~lr~al~ 197 (212)
-..|.|+|++ |. ...+..|-.. . ++-+.+ .......+.+.|++++.
T Consensus 13 L~~hpHiH~lVt~Ggl~~~~~w~~~~~~~~fp~k~l-~~~fr~k~l~~L~~~~~ 65 (183)
T PF04986_consen 13 LNWHPHIHCLVTGGGLDKDGQWKKARKDYFFPVKAL-SKVFRGKFLQALRQRYD 65 (183)
T ss_pred cccCCeEEEEEecccccccccccccCcccchhhhhh-hHHHHHHHHHHHHHHHH
Confidence 4578888887 43 3334457542 1 121222 24556777777777743
No 55
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=31.88 E-value=53 Score=33.58 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCc--eeEEEecCCCCCCccceEEEEEec
Q 028160 125 ISNAIMKATDADS--FNLLVNNGAAAGQVIFHTHIHIIP 161 (212)
Q Consensus 125 v~~~l~~~~~~~~--~ni~~n~g~~agq~v~HlHiHIIP 161 (212)
+...+.+.+|-.. |-++.|. ...|+|+||+=
T Consensus 89 I~~~~~~~LG~~~hQ~Vva~H~------DTdh~HiHIvi 121 (746)
T PRK13878 89 IEERICAGLGYGEHQRVSAVHH------DTDNLHIHIAI 121 (746)
T ss_pred HHHHHHHHhCCCCceEEEEEEC------CCCCceeEEEE
Confidence 4444456666544 4445553 35899999984
No 56
>PF14317 YcxB: YcxB-like protein
Probab=31.56 E-value=1.2e+02 Score=19.35 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=16.9
Q ss_pred eEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcc
Q 028160 64 VKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSS 100 (212)
Q Consensus 64 ~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~r 100 (212)
.-+.+++.++++.- .++.. ++||| +
T Consensus 23 ~~v~e~~~~~~l~~----~~~~~-------~~iPk-~ 47 (62)
T PF14317_consen 23 KKVVETKDYFYLYL----GKNQA-------FIIPK-R 47 (62)
T ss_pred EEEEEeCCEEEEEE----CCCeE-------EEEEH-H
Confidence 34677777776643 34467 99999 5
No 57
>PRK07218 replication factor A; Provisional
Probab=31.55 E-value=1.1e+02 Score=29.26 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=44.8
Q ss_pred CCCCc--cchhhhhhhccCCccCCCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccc
Q 028160 25 SSSGV--SASFCAQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIV 102 (212)
Q Consensus 25 ~~~~~--~~~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv 102 (212)
++|++ +|+-| +|. ..++.|..|--..++. +=..-+++|..-- ... .++.+ ...
T Consensus 292 ~gsgli~rCP~C--~r~------v~~~~C~~hG~ve~~~-------dlrik~vLDDGtg--~~~-------~~~~~-e~~ 346 (423)
T PRK07218 292 DGSGLIERCPEC--GRV------IQKGQCRSHGAVEGED-------DLRIKAILDDGTG--SVT-------VILDR-ELT 346 (423)
T ss_pred cCCcceecCcCc--ccc------ccCCcCCCCCCcCCee-------eeEEEEEEECCCC--eEE-------EEECh-hhh
Confidence 45666 99999 333 3457799888664432 2223567777632 233 77788 888
Q ss_pred cccccCCCCHHHHHHHHH
Q 028160 103 VSTKELPFQNEVVAAMCA 120 (212)
Q Consensus 103 ~~l~dL~~~~ee~~~l~~ 120 (212)
..+...+ .++..+|+.
T Consensus 347 e~l~G~~--~e~a~~~~~ 362 (423)
T PRK07218 347 EIVYGGT--LEDAEELAR 362 (423)
T ss_pred HhHhCCC--HHHHHHHHH
Confidence 8898888 777766654
No 58
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=30.13 E-value=1.9e+02 Score=25.09 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=7.6
Q ss_pred ccceEEEEEe
Q 028160 151 VIFHTHIHII 160 (212)
Q Consensus 151 ~v~HlHiHII 160 (212)
..+|-|+||+
T Consensus 78 g~~HPH~Hvl 87 (233)
T PF01446_consen 78 GSWHPHFHVL 87 (233)
T ss_pred CeeccceEEE
Confidence 3578888887
No 59
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=29.75 E-value=1.3e+02 Score=19.78 Aligned_cols=20 Identities=5% Similarity=0.130 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 028160 182 DQETSQLADQVREKLSNICE 201 (212)
Q Consensus 182 ~~e~~~la~~lr~al~~~~~ 201 (212)
+++.+++++.|.+++.+...
T Consensus 14 ~eqk~~l~~~it~~l~~~~~ 33 (62)
T PRK00745 14 VEQKRKLVEEITRVTVETLG 33 (62)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 66788888888888876544
No 60
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=28.90 E-value=1.4e+02 Score=21.56 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=26.1
Q ss_pred cceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHhhhhhhh
Q 028160 152 IFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICECSS 204 (212)
Q Consensus 152 v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al~~~~~~~~ 204 (212)
+||+|+++.|... +.+..+++++.|.+++.++..+..
T Consensus 1 MP~I~I~~~~g~~----------------s~EqK~~La~~iT~a~~~~lg~~~ 37 (76)
T PRK01271 1 MPHIDIKCFPREL----------------DEEQKAALAADITDVIIRHLNSKD 37 (76)
T ss_pred CCEEEEEECCCCC----------------CHHHHHHHHHHHHHHHHHHhCcCc
Confidence 3677887776311 256788999999999887776544
No 61
>PF09899 DUF2126: Putative amidoligase enzyme (DUF2126); InterPro: IPR018667 This domain is found in bacterial transglutaminase and transglutaminase-like proteins. Their exact function is, as yet, unknown.
Probab=24.96 E-value=1.8e+02 Score=30.09 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCCceeEEEecCC-CCCCccceEEEEEeccCCCCCCCccccccCC---CC-CChHHHHHHHHHHHH
Q 028160 120 AKVPLISNAIMKATDADSFNLLVNNGA-AAGQVIFHTHIHIIPRKAHDCLWTSESLRRR---PL-KIDQETSQLADQVRE 194 (212)
Q Consensus 120 ~~~~~v~~~l~~~~~~~~~ni~~n~g~-~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~---~~-~~~~e~~~la~~lr~ 194 (212)
..+..+.++|++.+.+.++-. +..|. +.|...+.|-+.++=|..|.+.|....+... +. ...++.+.+++.|-+
T Consensus 83 ~~A~~L~~rLr~r~apggllh-~gQGKWYPGE~LPRWal~lyWR~DG~PlW~~~~LlA~~~~~~~~~~~~A~~F~~~La~ 161 (819)
T PF09899_consen 83 RLADDLIRRLRARFAPGGLLH-YGQGKWYPGEPLPRWALGLYWRKDGEPLWRDPALLADEDKDYGATAEDAERFLAALAE 161 (819)
T ss_pred HHHHHHHHHHHHhhcCCceee-eccCCCCCCCCcchhhheeeeccCCccccCCHHHhcCCCCcCCCCHHHHHHHHHHHHH
Confidence 345567788888888877533 34455 4799999999999999999999976543221 11 124445555555555
Q ss_pred HH
Q 028160 195 KL 196 (212)
Q Consensus 195 al 196 (212)
.|
T Consensus 162 ~L 163 (819)
T PF09899_consen 162 RL 163 (819)
T ss_pred Hh
Confidence 55
No 62
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=23.14 E-value=40 Score=32.27 Aligned_cols=35 Identities=26% Similarity=0.538 Sum_probs=24.1
Q ss_pred CCCCCCCc-cchhhhhhhcc----------------CCccCCCCCCCccccc
Q 028160 22 PCSSSSGV-SASFCAQQRLS----------------HSQESGHENDCVFCKI 56 (212)
Q Consensus 22 ~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~C~FC~i 56 (212)
||+-+|++ +|--|+-|--+ ..|.+...+.|+||+-
T Consensus 362 YceMgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRc 413 (563)
T KOG1785|consen 362 YCEMGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRC 413 (563)
T ss_pred HHHccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceee
Confidence 57777777 78888776331 3344566789999984
No 63
>PRK07217 replication factor A; Reviewed
Probab=22.99 E-value=3.1e+02 Score=25.20 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=46.7
Q ss_pred CCCCc--cchh--hhhhhccCCccCCCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcc
Q 028160 25 SSSGV--SASF--CAQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSS 100 (212)
Q Consensus 25 ~~~~~--~~~~--~~~~~~~~~~~~~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~r 100 (212)
++|++ +|+- | +|+ -.++.|.-|-...++..- ..-+++|..-- -+. .++.+ +
T Consensus 183 ~GsglI~rCP~~~C--~Rv------l~~g~C~~HG~ve~~~DL-------rik~vlDDGt~--~~~-------~~~~~-e 237 (311)
T PRK07217 183 SGSGLIKRCPEEDC--TRV------LQNGRCSEHGKVEGEFDL-------RIKGVLDDGEE--VQE-------VIFNR-E 237 (311)
T ss_pred CCCCCeecCCcccc--Ccc------ccCCCCCCCCCcCCceee-------EEEEEEECCCC--eEE-------EEECh-H
Confidence 45666 8998 8 344 455778888776654322 33677787743 345 88888 8
Q ss_pred cccccccCCCCHHHHHHHHH
Q 028160 101 IVVSTKELPFQNEVVAAMCA 120 (212)
Q Consensus 101 Hv~~l~dL~~~~ee~~~l~~ 120 (212)
-+..+..++ -++..+++.
T Consensus 238 ~te~l~G~~--l~eak~~a~ 255 (311)
T PRK07217 238 ATEELTGIT--LEEAKQMAM 255 (311)
T ss_pred HhHHHhCCC--HHHHHHHHH
Confidence 888888888 777766653
No 64
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=22.91 E-value=29 Score=29.10 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=11.1
Q ss_pred cchhhhhhhccCCccCCCCCCCccccccc
Q 028160 30 SASFCAQQRLSHSQESGHENDCVFCKIIR 58 (212)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~C~FC~ii~ 58 (212)
.|..|+.....+.-+....-.|+||+...
T Consensus 136 ~C~~C~~~fv~~~~~~~~~~~Cp~C~~ps 164 (175)
T PF05280_consen 136 PCRRCGGHFVTHAHDPRHSFVCPFCQPPS 164 (175)
T ss_dssp E-TTT--EEEEESS--SS----TT-----
T ss_pred CCCCCCCCeECcCCCCCcCcCCCCCCCcc
Confidence 79999999885444445566899999754
No 65
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=21.15 E-value=2.5e+02 Score=18.29 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 028160 182 DQETSQLADQVREKLSNICEC 202 (212)
Q Consensus 182 ~~e~~~la~~lr~al~~~~~~ 202 (212)
+++.+++++.|.+++.++...
T Consensus 13 ~e~K~~l~~~it~~~~~~lg~ 33 (60)
T PF01361_consen 13 AEQKRELAEAITDAVVEVLGI 33 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 678899999999998876654
No 66
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=20.61 E-value=1.4e+02 Score=23.77 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=25.5
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028160 100 SIVVSTKELPFQNEVVAAMCAKVPLISNAIMKA 132 (212)
Q Consensus 100 rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~ 132 (212)
||+-++.||+ .+++..+.+.+..+.....+.
T Consensus 1 r~~l~~~dls--~~ei~~ll~~A~~lk~~~~~~ 31 (142)
T PF02729_consen 1 RHLLSIKDLS--PEEIEALLDLAKELKAAPKKG 31 (142)
T ss_dssp SEBSSGGGS---HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCchhhCC--HHHHHHHHHHHHHHHhhhhcC
Confidence 5888999999 999999999998887766654
Done!