Query 028160
Match_columns 212
No_of_seqs 174 out of 1213
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ksv_A Uncharacterized protein 100.0 1.8E-37 6.3E-42 249.9 14.7 141 47-199 9-149 (149)
2 3o0m_A HIT family protein; ssg 100.0 8.6E-37 2.9E-41 245.1 13.8 142 47-201 3-145 (149)
3 3imi_A HIT family protein; str 100.0 1.8E-36 6.2E-41 242.8 12.0 141 46-197 6-147 (147)
4 3lb5_A HIT-like protein involv 100.0 4E-36 1.4E-40 245.1 14.0 137 46-196 25-161 (161)
5 3l7x_A SMU.412C, putative HIT- 100.0 8.8E-36 3E-40 246.0 14.1 140 46-197 33-172 (173)
6 1y23_A HIT, histidine triad pr 100.0 1.4E-34 4.7E-39 230.0 10.5 139 48-197 4-143 (145)
7 2eo4_A 150AA long hypothetical 100.0 7E-34 2.4E-38 227.5 14.4 138 51-200 1-140 (149)
8 3r6f_A HIT family protein; str 100.0 3.9E-34 1.3E-38 226.2 9.9 132 46-197 3-134 (135)
9 3p0t_A Uncharacterized protein 100.0 1.5E-33 5.1E-38 223.0 13.0 132 49-199 5-137 (138)
10 3ano_A AP-4-A phosphorylase; d 100.0 4.5E-32 1.5E-36 231.4 11.7 141 48-200 68-210 (218)
11 3n1s_A HIT-like protein HINT; 100.0 1.2E-31 4E-36 207.9 9.1 109 47-165 1-110 (119)
12 2oik_A Histidine triad (HIT) p 100.0 1.8E-30 6.2E-35 208.9 14.1 136 45-199 6-143 (154)
13 3o1c_A Histidine triad nucleot 100.0 1.4E-30 4.7E-35 203.6 9.0 114 46-171 12-125 (126)
14 1fit_A FragIle histidine prote 100.0 6.2E-30 2.1E-34 204.2 12.9 134 52-197 4-147 (147)
15 3oj7_A Putative histidine tria 100.0 2.9E-30 1E-34 198.8 10.5 112 47-171 4-116 (117)
16 4egu_A Histidine triad (HIT) p 100.0 3.5E-30 1.2E-34 198.7 9.3 108 48-166 3-112 (119)
17 1xqu_A HIT family hydrolase; p 100.0 3.7E-29 1.3E-33 201.3 9.8 111 48-171 34-146 (147)
18 1ems_A Nitfhit, NIT-fragIle hi 100.0 2.5E-28 8.5E-33 224.1 12.1 135 48-196 296-440 (440)
19 3ohe_A Histidine triad (HIT) p 100.0 2E-27 6.9E-32 189.0 14.7 122 62-199 12-136 (137)
20 3i24_A HIT family hydrolase; s 99.9 1.4E-26 4.8E-31 186.9 14.3 125 62-201 12-138 (149)
21 3nrd_A Histidine triad (HIT) p 99.9 5.6E-25 1.9E-29 174.4 13.9 120 62-196 14-135 (135)
22 1gup_A Galactose-1-phosphate u 99.9 5.1E-26 1.8E-30 205.1 8.7 138 49-197 194-340 (348)
23 1z84_A Galactose-1-phosphate u 99.9 4.6E-25 1.6E-29 199.4 11.0 131 49-195 214-348 (351)
24 3i4s_A Histidine triad protein 99.9 1.2E-23 4E-28 169.9 14.5 119 63-197 18-139 (149)
25 3sp4_A Aprataxin-like protein; 99.4 2.4E-13 8.1E-18 114.7 3.4 91 65-163 23-126 (204)
26 1z84_A Galactose-1-phosphate u 98.6 1.1E-07 3.6E-12 85.7 9.9 102 49-160 61-190 (351)
27 3bl9_A Scavenger mRNA-decappin 98.6 1E-07 3.5E-12 84.5 8.9 98 55-165 142-251 (301)
28 1vlr_A MRNA decapping enzyme; 98.6 1.5E-07 5.2E-12 84.7 8.5 98 55-165 189-298 (350)
29 1gup_A Galactose-1-phosphate u 96.1 0.02 6.9E-07 51.0 8.6 62 94-160 109-170 (348)
30 2pof_A CDP-diacylglycerol pyro 93.1 0.11 3.6E-06 44.2 4.9 85 64-160 32-120 (227)
31 2qgp_A HNH endonuclease; Q39X4 91.8 0.093 3.2E-06 39.4 2.7 33 9-41 49-83 (112)
32 3vg8_G Hypothetical protein TT 59.6 9.6 0.00033 28.7 3.8 25 135-160 76-100 (116)
33 1u9d_A Hypothetical protein VC 33.9 1.5E+02 0.0051 22.3 9.2 72 105-199 21-96 (122)
34 3hfn_A ASL2047 protein; HFQ, S 31.3 41 0.0014 23.3 3.1 38 56-105 30-68 (72)
35 3hfo_A SSR3341 protein; HFQ, S 25.3 72 0.0025 21.9 3.5 37 57-105 29-66 (70)
36 1i2h_A PSD-ZIP45(homer-1C/VESL 24.5 59 0.002 26.0 3.4 30 181-210 97-126 (168)
37 1omh_A TRWC protein; protein-D 24.4 1.1E+02 0.0039 26.2 5.5 36 94-131 88-123 (293)
38 2czs_A DHC2, cytochrome C, put 23.7 21 0.0007 25.3 0.5 29 30-58 36-72 (80)
No 1
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=100.00 E-value=1.8e-37 Score=249.93 Aligned_cols=141 Identities=29% Similarity=0.446 Sum_probs=130.0
Q ss_pred CCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160 47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS 126 (212)
Q Consensus 47 ~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~ 126 (212)
+..+|+||+|++||.|+++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+.++++++
T Consensus 9 ~~~~~iFc~Ii~geip~~iV~ed~~~~af~d~~P~~pgH~-------LViPk-~H~~~l~dL~--~~e~~~l~~~~~~v~ 78 (149)
T 3ksv_A 9 MAANCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHM-------LVIPK-EHASCLHELG--MEDAADVGVLLAKAS 78 (149)
T ss_dssp CCTTCHHHHHHHTSSCCCEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCSSGGGSC--HHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHcCCCCccEEEECCCEEEEECCCCCCCCEE-------EEEeC-hhhhhhhhCC--HHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999 99999 9999999999 999999999999999
Q ss_pred HHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHhh
Q 028160 127 NAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNI 199 (212)
Q Consensus 127 ~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al~~~ 199 (212)
+++.+.+++++||+++|+|+.+||+|+|+|+|||||+.+|..|+ ..|...++. ++++++++++||++|++|
T Consensus 79 ~~l~~~~~~~g~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~g~~-~~w~~~~~~-~~~l~~~~~~lr~~l~~~ 149 (149)
T 3ksv_A 79 RAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLK-IGWDTVKVA-SDELAEDAKRYSEAIAKI 149 (149)
T ss_dssp HHHHCTTSCCEEEEEECCSTTTTCCSSSCCEEEEEECCTTSSCC-CCCCCCCCC-HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhCCCCEEEEEecCcccCCCCCEEEEEEEecccCCCCcc-cCCCCCCCC-HHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999987665 245444443 889999999999999764
No 2
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=100.00 E-value=8.6e-37 Score=245.12 Aligned_cols=142 Identities=32% Similarity=0.552 Sum_probs=127.7
Q ss_pred CCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160 47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS 126 (212)
Q Consensus 47 ~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~ 126 (212)
.|++|+||+|+++|.|.++|||++.|+||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+.++++++
T Consensus 3 ~m~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~p~~pgh~-------lViPk-~H~~~l~dl~--~~~~~~l~~~~~~v~ 72 (149)
T 3o0m_A 3 GSMSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHT-------LVIPK-THTVDLTDTP--PETVAGMAAVGQRIA 72 (149)
T ss_dssp CTTTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCCSTTTSC--HHHHHHHHHHHHHHH
T ss_pred CCCCCccCccccCCCCCCEEEECCCEEEEEcCCCCCCCeE-------EEEec-hhhCCHhHCC--HHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999 99999 9999999999 999999999999999
Q ss_pred HHHHHH-cCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHhhhh
Q 028160 127 NAIMKA-TDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNICE 201 (212)
Q Consensus 127 ~~l~~~-~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al~~~~~ 201 (212)
+++++. +++++||+++|+|+.+||+|+|+|+|||||+.+|..|+...|... .++++++++++||++|+.+.+
T Consensus 73 ~~l~~~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~d~~~~~~~~~~~---~~~~l~~~a~~lr~~l~~~~~ 145 (149)
T 3o0m_A 73 RAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGMVMR---RDPDREESGRLLRAALAQLDS 145 (149)
T ss_dssp HHHHHSTTCCSEEEEECCCSGGGTCCSSSCCEEEEEECTTCCCCC------C---CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCceEEEEecCCCCCCccceEEEEEECCccCCCcccccCcccC---ChHHHHHHHHHHHHHHHhhhc
Confidence 999998 899999999999999999999999999999999988865444322 246899999999999987655
No 3
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=100.00 E-value=1.8e-36 Score=242.75 Aligned_cols=141 Identities=29% Similarity=0.483 Sum_probs=127.5
Q ss_pred CCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
..|++|+||+|++||.|.++|||++.|+||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+..++++
T Consensus 6 ~~m~~CifC~i~~~e~~~~iV~e~~~~~a~~d~~p~~pgh~-------lViPk-~H~~~l~dL~--~~e~~~l~~~~~~v 75 (147)
T 3imi_A 6 HTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHT-------LVIPK-VHKQDIFALT--PEIASHIFSVVPKI 75 (147)
T ss_dssp CCGGGCHHHHHHTTSSCCCEEEECSSEEEEECTTCSSTTCE-------EEEES-SCCCSGGGCC--HHHHHHHHHTHHHH
T ss_pred cccCCCcCcccccCCCcCCEEEECCCEEEEEcCCCCCCcEE-------EEEEe-eccCChhhCC--HHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999 99999 9999999999 99999999999999
Q ss_pred HHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCC-CCCChHHHHHHHHHHHHHHH
Q 028160 126 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRR-PLKIDQETSQLADQVREKLS 197 (212)
Q Consensus 126 ~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~-~~~~~~e~~~la~~lr~al~ 197 (212)
++++.+.+++++||+++|+|+.+||+|+|+|+|||||+.+|..|. ..|... +..+++|+++++++||++|+
T Consensus 76 ~~~l~~~~~~~~~ni~~n~g~~aGq~v~HlHiHiiPR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ir~~l~ 147 (147)
T 3imi_A 76 ANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFG-AVWKSHQNEYTMENLQNIASTIANSVK 147 (147)
T ss_dssp HHHHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEE-EEECCCGGGCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCCEEEEEeCCcccCCCcCEEEEEEeCCccCCCCce-eeccccCCCCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999887763 234322 12237899999999998863
No 4
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=100.00 E-value=4e-36 Score=245.08 Aligned_cols=137 Identities=28% Similarity=0.381 Sum_probs=124.5
Q ss_pred CCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
.++++|+||+|+++|.|.++|||++.|+||+|++|.+|||+ ||||| +|+.++.||+ ++++.+|+.+++++
T Consensus 25 ~~~~~CiFC~i~~~e~p~~iV~e~e~~~af~d~~P~~pgH~-------LViPk-~H~~~l~dL~--~ee~~~l~~~~~~v 94 (161)
T 3lb5_A 25 AYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHT-------LVIPK-KGSRNLLDAD--TETLFPVIKAVQKI 94 (161)
T ss_dssp CCCTTSHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCSSTTTSC--HHHHHHHHHHHHHH
T ss_pred CCCCCCcccccccCCCCccEEEECCCEEEEECCCcCCCcEE-------EEEEe-eccchhhhCC--HHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999 99999 9999999999 99999999999999
Q ss_pred HHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHH
Q 028160 126 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKL 196 (212)
Q Consensus 126 ~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al 196 (212)
++++++.+++++||+++|+|+.+||+|+|+|+|||||+.+|..|+. .+... .++|+++++++||++|
T Consensus 95 ~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiiPR~~~d~~~~~---~~~~~-~~~~l~~~~~~ir~~L 161 (161)
T 3lb5_A 95 AKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIPRMEGIELTPH---NNIIT-PTEILEENAKKIRAAL 161 (161)
T ss_dssp HHHHHHHHTCSEEEEEEEESGGGTCCSCSCCEEEEEECTTCCC---------CC-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCEEEEEecCcccCCCCCEEEEEEEcccCCCCCCcC---cccCC-CHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999864 22233 3889999999999875
No 5
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=8.8e-36 Score=245.95 Aligned_cols=140 Identities=33% Similarity=0.586 Sum_probs=127.8
Q ss_pred CCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
..|++|+||+|+++|.|.++|||++.|+||+|++|.+|||+ ||||| +|+.++.||+ ++++.+|+.+++++
T Consensus 33 ~~m~~CiFC~Ii~~e~p~~iV~e~e~~~afld~~P~~pgH~-------LVIPk-rHv~~l~dL~--~ee~~~L~~~~~~v 102 (173)
T 3l7x_A 33 GSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHT-------LVIPK-EHVRNALEMT--QTQAANLFARIPKI 102 (173)
T ss_dssp CCCTTCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCE-------EEEES-SCCSCGGGCC--HHHHHHHHHTHHHH
T ss_pred CCCCCCcccccccCCCCceEEEECCCEEEEEcCCCCCCcEE-------EEEec-cccCChhhCC--HHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999 99999 9999999999 99999999999999
Q ss_pred HHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 028160 126 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLS 197 (212)
Q Consensus 126 ~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al~ 197 (212)
++++.+.+++++||+++|+|+.+||+|+|+|+|||||+.+|..|. ..|...+.. .+++++++++||++|+
T Consensus 103 ~~~l~~~~~~~g~ni~~n~g~~aGq~V~HlHiHiIPR~~~d~gf~-~~~~~~~~~-~~~l~~~~~~ir~~L~ 172 (173)
T 3l7x_A 103 ARALQKATKADGLNIINNNEETAGQTVFHAHVHLVPRFADSDEFD-IRFVQHEPD-FTRLGQLAEDIQKEIE 172 (173)
T ss_dssp HHHHHHHHTCSEEEEEECCSGGGTCCSCSCCEEEEEECC-CCSCC-CCCCCCCCC-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCEEEEEecCcccCCCcCEEEEEEEecccCCCCcc-cccCCCCCC-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999887773 245444333 6899999999999985
No 6
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=100.00 E-value=1.4e-34 Score=229.97 Aligned_cols=139 Identities=29% Similarity=0.519 Sum_probs=125.0
Q ss_pred CCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISN 127 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~ 127 (212)
.++|+||+|+++|.+.++|||++.|+||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+..++++++
T Consensus 4 ~~~C~fC~i~~~e~~~~iv~e~~~~~a~~~~~p~~pgh~-------LViPk-~h~~~l~dL~--~~~~~~l~~~~~~v~~ 73 (145)
T 1y23_A 4 AENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHT-------LVIPK-THIENVYEFT--DELAKQYFHAVPKIAR 73 (145)
T ss_dssp -CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCE-------EEEES-SCCSSGGGCC--HHHHHTTTTHHHHHHH
T ss_pred CCCCcCCccccCCCCCCEEEECCCEEEEECCCCCCCCeE-------EEEEh-hhhhhHHhCC--HHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999 99999 9999999999 9999999999999999
Q ss_pred HHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccC-CCCCChHHHHHHHHHHHHHHH
Q 028160 128 AIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRR-RPLKIDQETSQLADQVREKLS 197 (212)
Q Consensus 128 ~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~-~~~~~~~e~~~la~~lr~al~ 197 (212)
++.+.+++++||+++|+|+.+||+++|+|+|||||+.+|..|+. .|.. ....+++++++++++||++|+
T Consensus 74 ~l~~~~~~~~~ni~~n~g~~~g~~v~HlH~HiiPr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lr~~l~ 143 (145)
T 1y23_A 74 AIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGA-VWKTHADDYKPEDLQNISSSIAKRLA 143 (145)
T ss_dssp HHHHHHCCSEEEEEEEESGGGTCCSSSCCEEEEEECSTTCSEEE-EECCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCCEEEEEcCCcCCCCCcCEEEEEEEccccCCCCccc-ccCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999776642 2421 111237899999999999884
No 7
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=7e-34 Score=227.54 Aligned_cols=138 Identities=35% Similarity=0.508 Sum_probs=125.5
Q ss_pred CcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q 028160 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIM 130 (212)
Q Consensus 51 C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~ 130 (212)
|+||+|+++|.|.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+.+++++++++.
T Consensus 1 CiFC~i~~~e~~~~iv~e~~~~~a~~d~~p~~pgh~-------lViPk-~H~~~~~dL~--~~e~~~l~~~~~~v~~~l~ 70 (149)
T 2eo4_A 1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHT-------LVIPK-KHFENYLEAD--EDTLAELAKVVKLVSLGIK 70 (149)
T ss_dssp CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCSSGGGSC--HHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccccCCCCccEEEECCCEEEEECCCCCCCCeE-------EEEec-hhhCCHhHCC--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999 9999999999 9999999999999999999
Q ss_pred HHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCC-CCcccccc-CCCCCChHHHHHHHHHHHHHHHhhh
Q 028160 131 KATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDC-LWTSESLR-RRPLKIDQETSQLADQVREKLSNIC 200 (212)
Q Consensus 131 ~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~-~w~~~~~~-~~~~~~~~e~~~la~~lr~al~~~~ 200 (212)
+.+++++||+++|+|+.+||+++|+|+|||||+.+|. .|+. .|. ..+ .+++++++++++||++|.+..
T Consensus 71 ~~~~~~~~ni~~n~g~~~gq~v~HlHiHviPr~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~lr~~l~~~~ 140 (149)
T 2eo4_A 71 DAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYPDIFK-SFKPRKE-QEKEYYELLQKIIRESIENLK 140 (149)
T ss_dssp HHTTCSEEEEECCCSGGGTCCSCSCCEEEEEECSSCCCTTSC-CCCTTSC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEecCcCCCCCcCEEEEEEECCcCCCCccccc-ccCCCCC-CCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999986 4442 232 123 348899999999999996544
No 8
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.9e-34 Score=226.17 Aligned_cols=132 Identities=27% Similarity=0.484 Sum_probs=115.1
Q ss_pred CCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
+.|++|+||+|++ .|.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+.+++++
T Consensus 3 ~~~~~C~fC~i~~--~~~~iv~e~~~~~af~d~~p~~pgh~-------lViPk-~H~~~l~dL~--~~~~~~l~~~~~~v 70 (135)
T 3r6f_A 3 GSMEGCIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHF-------LVIPK-AHHPYLHNYK--PEELSGVLDTIRHL 70 (135)
T ss_dssp ---CCCHHHHHHH--HCCSCCEECSSEEEEECSSCSSTTCE-------EEEES-SCCSSGGGSC--GGGGTTHHHHHHHH
T ss_pred CCCCCCcCccccc--CCceEEEECCCEEEEECCCCCCCCeE-------EEEEh-hHhCCHhHCC--HHHHHHHHHHHHHH
Confidence 4578999999997 67899999999999999999999999 99999 9999999999 99999999888776
Q ss_pred HHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 028160 126 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLS 197 (212)
Q Consensus 126 ~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al~ 197 (212)
++ .+++++||+++|+|+ ||+++|+|+|||||+.+|..|+ ..|...++ +++|+++++++||++|+
T Consensus 71 ~~----~~~~~~~ni~~n~g~--gq~v~HlH~HiiPR~~~d~g~~-~~~~~~~~-~~~~l~~~~~~ir~~l~ 134 (135)
T 3r6f_A 71 VQ----KFGFERYNILQNNGN--HQEVFHVHFHVIPFVSADERLM-INWKAKSV-SDKEYSEMVEEARLRVS 134 (135)
T ss_dssp HH----HHTCCSEEEECCSSS--SCSSSSCCEEEEECCBTTBSCC-CCCCCCCC-CHHHHHHHHHHHHHHHH
T ss_pred HH----HhCCCCeEEEEEcCC--CCCccEEEEEEeccccCCCCce-ecCCCCCC-CHHHHHHHHHHHHHHhc
Confidence 65 468889999999998 9999999999999999987776 34554444 38899999999999985
No 9
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=100.00 E-value=1.5e-33 Score=223.00 Aligned_cols=132 Identities=20% Similarity=0.332 Sum_probs=119.0
Q ss_pred CCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHH
Q 028160 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNA 128 (212)
Q Consensus 49 ~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~ 128 (212)
++|+||+|++||.|.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+..+++++++
T Consensus 5 ~~CiFC~i~~~e~p~~iV~e~~~~~af~d~~P~~pgH~-------LViPk-~H~~~l~dL~--~~e~~~l~~~~~~v~~~ 74 (138)
T 3p0t_A 5 MASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHT-------LVVPR-EEIDNWQDVD--SAAFNRVMGVSQLIGKA 74 (138)
T ss_dssp HHHHHHHHHTTSSCCCEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCCCGGGSC--HHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHhcCCCCcCEEEeCCCEEEEecCCCCCCcEE-------EEEEh-HHhCchhhCC--HHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999 99999 9999999999 99999999999999999
Q ss_pred HHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCC-CCccccccCCCCCChHHHHHHHHHHHHHHHhh
Q 028160 129 IMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDC-LWTSESLRRRPLKIDQETSQLADQVREKLSNI 199 (212)
Q Consensus 129 l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~-~w~~~~~~~~~~~~~~e~~~la~~lr~al~~~ 199 (212)
+++.++++++|+. .+||+|+|+|+|||||+.+|. .|+ |.+.+. +++++++++++||++|+++
T Consensus 75 l~~~~~~~~~n~~-----~~gq~v~HlH~HiiPr~~~d~~~~~---~~~~~~-~~~~l~~~~~~l~~~l~~~ 137 (138)
T 3p0t_A 75 VCKAFRTERSGLI-----IAGLEVPHLHVHVFPTRSLSDFGFA---NVDRNP-SPESLDEAQAKIKAALAQL 137 (138)
T ss_dssp HHHHHTCSEEEEE-----ECCSSCSSCCEEEEEESCGGGSSST---TCCSSC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEE-----ECCcccCEEEEEEeccccCCCCccc---CCCCCC-CHHHHHHHHHHHHHHHHhc
Confidence 9999999999985 379999999999999999864 443 222333 3789999999999999754
No 10
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=99.97 E-value=4.5e-32 Score=231.44 Aligned_cols=141 Identities=17% Similarity=0.227 Sum_probs=125.1
Q ss_pred CCCCcccccccCC-CCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGE-SPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS 126 (212)
Q Consensus 48 ~~~C~FC~ii~~e-~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~ 126 (212)
+++|+||+|++++ .+.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+.+++.+.
T Consensus 68 ~~~CiFC~i~~~e~~~~~iV~edd~~~afld~~P~~pGH~-------LVIPk-rHv~~l~dL~--~ee~~~L~~l~~~v~ 137 (218)
T 3ano_A 68 SPAQPFTEIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHL-------MVVPY-RRVSELEDLT--DLESAELMAFTQKAI 137 (218)
T ss_dssp --CCHHHHGGGSCHHHHTEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCCCGGGSC--HHHHHHHHHHHHHHH
T ss_pred CCCCcCcccccCCCCCceEEEECCcEEEEEccCCCCCcEE-------EEEec-hhhCChhhCC--HHHHHHHHHHHHHHH
Confidence 4579999999984 68899999999999999999999999 99999 9999999999 999999999999999
Q ss_pred HHHHHHcCCCceeEEEecCCCCCCcc-ceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHHHHhhh
Q 028160 127 NAIMKATDADSFNLLVNNGAAAGQVI-FHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREKLSNIC 200 (212)
Q Consensus 127 ~~l~~~~~~~~~ni~~n~g~~agq~v-~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~al~~~~ 200 (212)
+++++.+++++||+++|+|+.+||++ +|+|+|||||+.+|..|+. .|..... .++++++++++||++|+++.
T Consensus 138 ~~l~~~~~~~g~ni~~n~G~~aGq~V~~HlHiHIIPR~~gd~~f~~-v~g~~~~-~~~~l~~~~~~Lr~al~~~~ 210 (218)
T 3ano_A 138 RVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVVPRWGGDANFIT-IIGGSKV-IPQLLRDTRRLLATEWARQP 210 (218)
T ss_dssp HHHHHHCCCSEEEEEEEESGGGTCTTTTSCCEEEEEECTTGGGCCC-CC------CCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCCEEEEEecCcccCCcccCEEEEEEEcccCCCCCccc-ccccccC-CHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 9999999999999987753 3433333 36889999999999998764
No 11
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=99.97 E-value=1.2e-31 Score=207.94 Aligned_cols=109 Identities=21% Similarity=0.407 Sum_probs=94.7
Q ss_pred CCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160 47 HENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS 126 (212)
Q Consensus 47 ~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~ 126 (212)
++++|+||+|++||.|.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ +++..++++++..+.
T Consensus 1 ~~~~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~-------LViPk-~Hv~~l~dL~--~~e~~~l~~l~~~~~ 70 (119)
T 3n1s_A 1 MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHI-------LIIPN-ILIPTVNDVS--AEHEQALGRMITVAA 70 (119)
T ss_dssp CCCCCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEE-------EEEES-SCCCSGGGCC--GGGHHHHHHHHHHHH
T ss_pred CCCCChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeE-------EEEeh-hHhCCHhHcC--HHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999 99999 9999999999 776555555554443
Q ss_pred HHHHH-HcCCCceeEEEecCCCCCCccceEEEEEeccCCC
Q 028160 127 NAIMK-ATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAH 165 (212)
Q Consensus 127 ~~l~~-~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~ 165 (212)
+.+++ .+++++||+++|+|+.+||+|+|+|+|||||+.-
T Consensus 71 ~v~~~~~~~~~g~ni~~n~g~~agq~V~HlH~Hiipr~~~ 110 (119)
T 3n1s_A 71 KIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110 (119)
T ss_dssp HHHHHTTCTTTCEEEEEEEHHHHTCCSSSCCEEEEESSCC
T ss_pred HHHHHhCCCCCCeEEEEeCCCCcCCCcCEEEEEEeCCccc
Confidence 33333 4678999999999999999999999999999864
No 12
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=99.97 E-value=1.8e-30 Score=208.91 Aligned_cols=136 Identities=17% Similarity=0.204 Sum_probs=119.0
Q ss_pred CCCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHH
Q 028160 45 SGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPL 124 (212)
Q Consensus 45 ~~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~ 124 (212)
+..+++|+||+++ +.++|||+++|+||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+..+++
T Consensus 6 ~~~~~~C~FC~~~----~~~iv~e~~~~~a~~d~~p~~pgh~-------LViPk-~H~~~l~dL~--~~~~~~l~~~~~~ 71 (154)
T 2oik_A 6 MSFHKNCELCTTA----GGEILWQDALCRVVHVENQDYPGFC-------RVILN-RHVKEMSDLR--PAERDHLMLVVFA 71 (154)
T ss_dssp -CCCTTCHHHHSC----CSEEEEECSSEEEEECCCTTCTTCE-------EEEES-SCCSCGGGSC--HHHHHHHHHHHHH
T ss_pred CCCCCCCccCCCC----CCeEEEECCcEEEEEcCCCCCCeEE-------EEEec-CCcCChHHCC--HHHHHHHHHHHHH
Confidence 3456789999854 6799999999999999999999999 99999 9999999999 9999999999999
Q ss_pred HHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccccCC--CCCChHHHHHHHHHHHHHHHhh
Q 028160 125 ISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRR--PLKIDQETSQLADQVREKLSNI 199 (212)
Q Consensus 125 v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~--~~~~~~e~~~la~~lr~al~~~ 199 (212)
+++++++.+++++||++ .+||+++|+|+|||||+.+|..|+...|... ....++++++++++||++|.+.
T Consensus 72 v~~~l~~~~~~~g~ni~-----~~gq~v~HlHiHiiPr~~~d~~~~~~~w~~~~~~~~~~~~~~~~~~~l~~~l~~~ 143 (154)
T 2oik_A 72 VEEAVREVMRPDKINLA-----SLGNMTPHVHWHVIPRFKRDRHFPNSVWGETKRESLPQALDQGSTTALKKAISVR 143 (154)
T ss_dssp HHHHHHHHHCCSEEEEE-----ECCSSSCSCEEEEEEECTTSSSTTSCTTSCCCSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEhH-----HhCCCCCEEEEEEeCCCCCCCCCCccccCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 3689999999999999999998986666422 1222567899999999998754
No 13
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=99.96 E-value=1.4e-30 Score=203.62 Aligned_cols=114 Identities=22% Similarity=0.394 Sum_probs=95.8
Q ss_pred CCCCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 46 ~~~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
..+++|+||+|++||.|.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ +++...+.+++..+
T Consensus 12 ~~~~~CiFC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~-------LViPk-~H~~~l~dL~--~~e~~~l~~l~~~~ 81 (126)
T 3o1c_A 12 RPGGDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHF-------LVIPK-KHISQISAAE--DADESLLGHLMIVG 81 (126)
T ss_dssp CTTCSSHHHHHHHTSSCCCEEEECSSEEEEECSSCSSSEEE-------EEEES-SCCCCGGGCC--GGGHHHHHHHHHHH
T ss_pred CCCCCCCcchhhcCCCcCCEEEECCCEEEEECCCCCCCceE-------EEEec-hHhchHhhCc--hhHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999 99999 9999999999 77766666655433
Q ss_pred HHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCcc
Q 028160 126 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 171 (212)
Q Consensus 126 ~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~ 171 (212)
.+.+++...+++||+++|+|+.+||+|+|+|+|||||..- .||.
T Consensus 82 ~~~~~~~~~~~g~ni~~n~g~~agq~v~HlH~Hiipr~~~--~~~~ 125 (126)
T 3o1c_A 82 KKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQM--NWPP 125 (126)
T ss_dssp HHHHHHTTCTTCEEEECCCHHHHTCCSSSCCEEEEESSCC--CSSC
T ss_pred HHHHHHhCCCCCeEEEEecCCccCCccCEeEEEEeCCccc--CCCC
Confidence 3333333335799999999999999999999999999753 4764
No 14
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=99.96 E-value=6.2e-30 Score=204.16 Aligned_cols=134 Identities=20% Similarity=0.349 Sum_probs=112.3
Q ss_pred cccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 028160 52 VFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMK 131 (212)
Q Consensus 52 ~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~ 131 (212)
.||.+. ..+.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+..++++++++.+
T Consensus 4 ~f~~~~--ip~~~iv~e~~~~~a~~d~~p~~pgh~-------LViPk-~h~~~~~dL~--~~e~~~l~~~~~~v~~~l~~ 71 (147)
T 1fit_A 4 RFGQHL--IKPSVVFLKTELSFALVNRKPVVPGHV-------LVCPL-RPVERFHDLR--PDEVADLFQTTQRVGTVVEK 71 (147)
T ss_dssp EETTEE--ECGGGEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCSSGGGSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcc--cCCcEEEEECCCEEEEECCCCCCCcEE-------EEEEc-cccCChhhCC--HHHHHHHHHHHHHHHHHHHH
Confidence 467653 235789999999999999999999999 99999 9999999999 99999999999999999999
Q ss_pred HcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCccccc------c----CCCCCChHHHHHHHHHHHHHHH
Q 028160 132 ATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESL------R----RRPLKIDQETSQLADQVREKLS 197 (212)
Q Consensus 132 ~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~------~----~~~~~~~~e~~~la~~lr~al~ 197 (212)
.+++++||+++|+|+.+||+++|+|+|||||+.+|..|+.+.| . .+...+++|+++++++||++|+
T Consensus 72 ~~~~~~~ni~~n~g~~agq~v~HlH~HiiPr~~~d~~~~~~v~~~~~~~~~~~~~~~~~~~~e~~~~a~~lr~~l~ 147 (147)
T 1fit_A 72 HFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEMAAEAAALRVYFQ 147 (147)
T ss_dssp HTTCSEEEEEECCSGGGTCCSSSCCEEEEEECTTC--------------------CCCCCHHHHHHHHHHHHHTTC
T ss_pred hcCCCCEEEEEecCCccCCCccEEEEEEECCcCCCCCCcchHHHHhhhcccccccccCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999877765433 1 1112247899999999998763
No 15
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=99.96 E-value=2.9e-30 Score=198.80 Aligned_cols=112 Identities=28% Similarity=0.448 Sum_probs=93.5
Q ss_pred CCCC-CcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 47 HEND-CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 47 ~~~~-C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
.|.+ |+||+|+++|.+.++|||+|+++||+|.+|.+|||+ ||||| +|+.++.||+ +++...+.++++.+
T Consensus 4 ~m~~~CiFC~i~~~e~~~~iv~e~~~~~af~d~~P~~pgH~-------LViPk-~H~~~l~dL~--~~e~~~l~~l~~~~ 73 (117)
T 3oj7_A 4 SMADSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHI-------LVIPK-QHIASLNEIT--EENEAFIGKVLYKV 73 (117)
T ss_dssp -----CHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEE-------EEEES-SCCCSGGGCC--TTTHHHHHHHHHHH
T ss_pred ccCCCCcccccccCCCCCCEEEECCcEEEEECCCCCCCceE-------EEEec-hHhCCHHHCC--HHHHHHHHHHHHHH
Confidence 3555 999999999999999999999999999999999999 99999 9999999999 77666666666644
Q ss_pred HHHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCcc
Q 028160 126 SNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 171 (212)
Q Consensus 126 ~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~ 171 (212)
.+.+++.++ ++||+++|+|+.+||+++|+|+|||||+.- .||.
T Consensus 74 ~~~~~~~~~-~g~ni~~n~g~~agq~v~H~H~Hiipr~~~--~~~~ 116 (117)
T 3oj7_A 74 SLIGKKECP-EGYRVVNNIGEDAGQTVKHIHFHILGGKKL--AWDK 116 (117)
T ss_dssp HHHHHHHCT-TCEEEECCCSTTTTCCSSSCCEEEEESSCC--CCCC
T ss_pred HHHHHhcCC-CCeEEEEcCCCCCCeeeeEEEEEEeCCCCC--CCCC
Confidence 444444454 499999999999999999999999999753 3653
No 16
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=99.96 E-value=3.5e-30 Score=198.68 Aligned_cols=108 Identities=31% Similarity=0.505 Sum_probs=94.0
Q ss_pred CCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISN 127 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~ 127 (212)
.++|+||+|+++|.+.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ +++...+.++++. ++
T Consensus 3 ~~~C~FC~i~~~e~~~~iv~e~e~~~af~d~~P~~pgH~-------LViPk-~H~~~l~dL~--~~e~~~l~~~~~~-~~ 71 (119)
T 4egu_A 3 RMDCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHI-------LVVPK-KHYDSLIDIP--DKEMDIVSHIHVV-IN 71 (119)
T ss_dssp CTTCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEE-------EEEES-SCCSSGGGSC--GGGTHHHHHHHHH-HH
T ss_pred CCCccCeecccCCCCCCEEEECCCEEEEECCCCCCCceE-------EEEec-hhhCCHhHCC--HhHHHHHHHHHHH-HH
Confidence 367999999999999999999999999999999999999 99999 9999999999 7766666666653 34
Q ss_pred HHHHHc--CCCceeEEEecCCCCCCccceEEEEEeccCCCC
Q 028160 128 AIMKAT--DADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHD 166 (212)
Q Consensus 128 ~l~~~~--~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d 166 (212)
++.+.+ ++++||+++|+|+.+||+++|+|+|||||+..+
T Consensus 72 ~~~~~~~~~~~~~ni~~n~g~~agq~v~HlH~Hiip~~~~~ 112 (119)
T 4egu_A 72 KIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLP 112 (119)
T ss_dssp HHHHHHTHHHHCEEEEEEETTTTTCCSCSCCEEEEESSCCC
T ss_pred HHHHHhCCCCCCEEEEEeCCCCCCCCcCEEEEEEeCCcccC
Confidence 444443 467999999999999999999999999998643
No 17
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=99.96 E-value=3.7e-29 Score=201.29 Aligned_cols=111 Identities=28% Similarity=0.448 Sum_probs=96.6
Q ss_pred CCCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISN 127 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~ 127 (212)
|++|+||+|+++|.+.++|||++.++||+|.+|.+|||+ ||||| +|+.++.||+ +++..++.++++ +++
T Consensus 34 m~~CiFC~ii~~e~~~~iV~e~e~~~af~d~~P~~pgH~-------LViPk-rHv~~l~dL~--~~e~~~l~~l~~-~~~ 102 (147)
T 1xqu_A 34 LENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHV-------LIIPK-EHIANVKEIN--ESNAQILIDIHK-AAN 102 (147)
T ss_dssp CTTCHHHHHHTTSSCBCEEEECSSEEEEECSSCSSSEEE-------EEEES-SCCSSGGGCC--TTTTTHHHHHHH-HHH
T ss_pred cCCCcccccccCCCCcEEEEECCcEEEEEecCCCCccEE-------EEEeC-cccCChhHCC--HHHHHHHHHHHH-HHH
Confidence 568999999999999999999999999999999999999 99999 9999999999 766666666666 444
Q ss_pred HHHHHcC--CCceeEEEecCCCCCCccceEEEEEeccCCCCCCCcc
Q 028160 128 AIMKATD--ADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTS 171 (212)
Q Consensus 128 ~l~~~~~--~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~ 171 (212)
++.+.++ +++||+++|+|+.+||+++|+|+|||||+. ..||.
T Consensus 103 ~v~~~~~~~~~gyni~~n~g~~aGq~v~HlHlHiiP~~~--~~wp~ 146 (147)
T 1xqu_A 103 KVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVD--MGPKI 146 (147)
T ss_dssp HHHHHTTCTTTCEEEECCCSTTTTCCSCSCCEEEEESSC--CCSCC
T ss_pred HHHHHhCCCCCCEEEEEecCcccCCCccEEEEEEeCCCc--CCCCC
Confidence 5555555 569999999999999999999999999975 55753
No 18
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=99.95 E-value=2.5e-28 Score=224.14 Aligned_cols=135 Identities=21% Similarity=0.321 Sum_probs=116.2
Q ss_pred CCCCcccccccCCCCc-eEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160 48 ENDCVFCKIIRGESPA-VKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS 126 (212)
Q Consensus 48 ~~~C~FC~ii~~e~p~-~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~ 126 (212)
.+.|+||+ +|.|. ++|||++++++|+|.+|.+|||+ ||||| +|+.++.||+ ++++.+|+..+++++
T Consensus 296 ~~~c~fc~---~e~p~~~iv~e~~~~~a~~~~~p~~pgh~-------lviPk-~h~~~~~~l~--~~~~~~l~~~~~~v~ 362 (440)
T 1ems_A 296 TGGLKFAR---FNIPADHIFYSTPHSFVFVNLKPVTDGHV-------LVSPK-RVVPRLTDLT--DAETADLFIVAKKVQ 362 (440)
T ss_dssp SSCCEETT---EECCGGGEEEECSSEEEEECSSCSSTTCE-------EEEES-SCCSCGGGSC--HHHHHHHHHHHHHHH
T ss_pred cCceeeec---cccCCceEEEECCCEEEEEcCCcCCCCeE-------EEEEc-cccCChhHCC--HHHHHHHHHHHHHHH
Confidence 67899999 56665 68999999999999999999999 99999 9999999999 999999999999999
Q ss_pred HHHHHHcCCCceeEEEecCCCCCCccceEEEEEeccCCCCCCCcccccc---------CCCCCChHHHHHHHHHHHHHH
Q 028160 127 NAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLR---------RRPLKIDQETSQLADQVREKL 196 (212)
Q Consensus 127 ~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~---------~~~~~~~~e~~~la~~lr~al 196 (212)
+++.+.+++++||+++|+|+.+||+|+|+|+|||||+.+|..|+ ..|. .++..+++|+++++++||++|
T Consensus 363 ~~l~~~~~~~~~n~~~~~g~~~gq~v~HlH~Hiipr~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (440)
T 1ems_A 363 AMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDN-EIYQKLASHDKEPERKPRSNEQMAEEAVVYRNLM 440 (440)
T ss_dssp HHHHHHTTCSEEEEECCCSGGGTCCSSSCCEEEEEECSSCC--------------------CCCHHHHHHHHHHHHTTC
T ss_pred HHHHhhcCCCCeEEEEecCCCCCCCccEEEEEEeCCCCCCCCcc-hhHHHhhhcccccccCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999997776 3341 122234789999999999754
No 19
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=99.95 E-value=2e-27 Score=189.01 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=111.3
Q ss_pred CceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Q 028160 62 PAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLL 141 (212)
Q Consensus 62 p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~ 141 (212)
...+|++++.+.++++.+|.+|||+ ||+|| +|+.++.||+ +++..+++..+.++++++.+.++++++|++
T Consensus 12 d~~~v~~~~~~~v~l~~~p~~pGh~-------lV~~k-~h~~~l~dl~--~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~ 81 (137)
T 3ohe_A 12 DTHKLGESRLCDVLLMNDNTWPWVI-------LVPRV-SGIREIYELP--NEQQQRLLFESSALSEGMMELFGGDKMNVA 81 (137)
T ss_dssp HEEEEEECSSEEEEEESCTTSCEEE-------EEESC-TTCCSGGGSC--HHHHHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEECCcEEEEEcCCCCCCEEE-------EEecc-cccCChHHCC--HHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 3578999999999999999999999 99999 9999999999 999999999999999999999999999987
Q ss_pred EecCCCCCCccceEEEEEeccCCCCCCCcccccc---CCCCCChHHHHHHHHHHHHHHHhh
Q 028160 142 VNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLR---RRPLKIDQETSQLADQVREKLSNI 199 (212)
Q Consensus 142 ~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~---~~~~~~~~e~~~la~~lr~al~~~ 199 (212)
.+||+|+|+|+|||||+.+|..||...|. +.++ +++|+++++++||++|+.+
T Consensus 82 -----~aGq~V~HlH~HviPR~~~D~~~p~~vw~~~~~~~~-~~eel~~~~~~ir~~L~~~ 136 (137)
T 3ohe_A 82 -----ALGNMVPQLHLHHIVRYQGDPAWPGPVWGKQPPVPY-TEEQQASVKAKLQPLLEQL 136 (137)
T ss_dssp -----ECCSSCCSCCEEEEEECTTSTTTTSCCTTSSCCCCC-CHHHHHHHHHHHHHHHHHT
T ss_pred -----eccCcCCEEEEEEeCCCCCCCCCCcccccCCCCCCC-CHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999876773 2233 3889999999999999754
No 20
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=99.94 E-value=1.4e-26 Score=186.87 Aligned_cols=125 Identities=19% Similarity=0.292 Sum_probs=112.4
Q ss_pred CceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Q 028160 62 PAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLL 141 (212)
Q Consensus 62 p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~ 141 (212)
...+|++++.++|+++.+|.+|||+ ||+|| +|+.++.||+ +++..+++..+..++++|.+.++++++|++
T Consensus 12 d~~~v~~~~~~~v~L~~~p~~pGh~-------LV~pk-~Hv~~l~dL~--~e~~~~l~~~~~~va~al~~~~~~~~~Ni~ 81 (149)
T 3i24_A 12 DCIVLGNLPLCKVLLIKEDIGPWLI-------LVPRI-EELKEIHHMT--DEQQIQFIKESSAVAQLLEDNFSPDKINIG 81 (149)
T ss_dssp HEEEEEECSSEEEEEECBSSTTEEE-------EEESC-TTCSSGGGSC--HHHHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCEEEEECCCEEEEEcCCCCCCEEE-------EEeCc-cccCChhHCC--HHHHHHHHHHHHHHHHHHHHhhCCCeEEEh
Confidence 3579999999999999999999999 99999 9999999999 999999999999999999999999999997
Q ss_pred EecCCCCCCccceEEEEEeccCCCCCCCccccccC--CCCCChHHHHHHHHHHHHHHHhhhh
Q 028160 142 VNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRR--RPLKIDQETSQLADQVREKLSNICE 201 (212)
Q Consensus 142 ~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~--~~~~~~~e~~~la~~lr~al~~~~~ 201 (212)
.+||+|+|+|+|||||+.+|..||...|.. +...+++|+++++++||++|+.+..
T Consensus 82 -----~aGq~V~HlH~HvIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~a~kIr~~L~~~~~ 138 (149)
T 3i24_A 82 -----ALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLVDLLRDKLSNISG 138 (149)
T ss_dssp -----ECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHHHHHHHHHTTSTT
T ss_pred -----hhhCCCCEEEEEEeCCccCCCCCCcceecCCCCCCCCHHHHHHHHHHHHHHHHhccc
Confidence 389999999999999999999998776642 2223488999999999999976544
No 21
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=99.92 E-value=5.6e-25 Score=174.38 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=105.4
Q ss_pred CceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Q 028160 62 PAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLL 141 (212)
Q Consensus 62 p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~ 141 (212)
...+|++++.+.++++.+|.+||+ +||||++|+.++.||+ +++..+++..+.++++++++.++++++|++
T Consensus 14 ~~~~v~~~~~~~v~l~~~~~~p~~--------lvVpkr~h~~~l~dl~--~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~ 83 (135)
T 3nrd_A 14 DGIPIGTLGLCQMRLMNDRRWPWL--------ILVPQRADIKEVFELT--PLDQAMLTFETNLVAAGLKKATGAEKINIG 83 (135)
T ss_dssp HEEEEEECSSEEEEEESCTTSCEE--------EEEECCTTCCSGGGSC--HHHHHHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCEEEEECCcEEEEEcCCCCCCEE--------EEEcCccccCChHHCC--HHHHHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 357999999999999999999965 6677636999999999 999999999999999999999999999986
Q ss_pred EecCCCCCCccceEEEEEeccCCCCCCCccccccC--CCCCChHHHHHHHHHHHHHH
Q 028160 142 VNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRR--RPLKIDQETSQLADQVREKL 196 (212)
Q Consensus 142 ~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~--~~~~~~~e~~~la~~lr~al 196 (212)
.+||+|+|+|+|||||+.+|..||...|.. +...+++|+++++++||++|
T Consensus 84 -----~aGq~V~HlH~HviPR~~~D~~~~~~~~~~~~~~~~~~~el~~~a~~i~~~L 135 (135)
T 3nrd_A 84 -----ALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFAARIMENL 135 (135)
T ss_dssp -----ECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCCCCHHHHHHHHHHHHHHC
T ss_pred -----eccCCCCEEEEEEecCCCCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHhhC
Confidence 589999999999999999999998877732 12224889999999999875
No 22
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=99.92 E-value=5.1e-26 Score=205.14 Aligned_cols=138 Identities=10% Similarity=0.106 Sum_probs=118.7
Q ss_pred CCCcccccccCCCCc--eEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHH
Q 028160 49 NDCVFCKIIRGESPA--VKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLIS 126 (212)
Q Consensus 49 ~~C~FC~ii~~e~p~--~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~ 126 (212)
++|+||+|+++|.+. ++|||+++|+||+|++|.+|||+ ||||| +|+.++.||+ ++++.+|+.++++++
T Consensus 194 ~~Cifc~ii~~E~~~~~~iV~E~e~~~af~~~~p~~pgh~-------lViPK-~Hv~~l~dL~--~~e~~~La~~l~~v~ 263 (348)
T 1gup_A 194 KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFET-------LLLPK-AHVLRITDLT--DAQRSDLALALKKLT 263 (348)
T ss_dssp SSCHHHHHHHHHHHHCTTEEEECSSEEEECCTTCCSTTCE-------EEEES-SCCSSGGGCC--HHHHHHHHHHHHHHH
T ss_pred CCCchhHHHhhccccCceEEEeCCcEEEEEccCCCCceEE-------EEEeC-cccCChHHCC--HHHHHHHHHHHHHHH
Confidence 789999999998765 99999999999999999999999 99999 9999999999 999999999999999
Q ss_pred HHHHHHcCCC-ceeEEEecCCCC--CCccceEEEEEec---cCCCCCCCcccc-ccCCCCCChHHHHHHHHHHHHHHH
Q 028160 127 NAIMKATDAD-SFNLLVNNGAAA--GQVIFHTHIHIIP---RKAHDCLWTSES-LRRRPLKIDQETSQLADQVREKLS 197 (212)
Q Consensus 127 ~~l~~~~~~~-~~ni~~n~g~~a--gq~v~HlHiHIIP---R~~~d~~w~~~~-~~~~~~~~~~e~~~la~~lr~al~ 197 (212)
+++.+.++++ +||+++|.++.. +|+++|+|+|||| |+.++..|..+. +..... .+...+++|++||+++.
T Consensus 264 ~~l~~~~~~~~~Yn~g~~~~p~~g~~q~v~HlHiHiiPpl~R~~~~~~~~~g~e~~~~~~-~~~~pE~~A~~Lr~~~~ 340 (348)
T 1gup_A 264 SRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQ-RDLTAEQAAERLRAVSD 340 (348)
T ss_dssp HHHHHHHTSCCCEEEEEECCCSSSSCCTTCCCEEEEECCBCSSSSCBCCCCTHHHHTCCE-ESSCHHHHHHHHHTSCS
T ss_pred HHHHHHhCCCCCeEEEEEeCCCCCCCCcccEEEEEEecchhccCCcccceeeEecccCCC-CCCCHHHHHHHHHhhhh
Confidence 9999999997 999999999875 4899999999999 998875444322 111111 13458899999998763
No 23
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=99.92 E-value=4.6e-25 Score=199.39 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCCcccccccCCCCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHH
Q 028160 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNA 128 (212)
Q Consensus 49 ~~C~FC~ii~~e~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~ 128 (212)
++|+||+|+++|. +|||+++|+||+|++|.+|||+ ||||| +|+.++.||+ ++++.+|+.++++++++
T Consensus 214 ~~ciFc~ii~~E~---iV~E~e~~~af~~~~p~~P~h~-------lViPk-~Hv~~l~dl~--~~e~~~La~~l~~v~~~ 280 (351)
T 1z84_A 214 GKCCLCEAKSKHF---VIDESSHFVSVAPFAATYPFEI-------WIIPK-DHSSHFHHLD--DVKAVDLGGLLKLMLQK 280 (351)
T ss_dssp SSCTTTTHHHHSE---EEEECSSEEEEECTTCSSTTCE-------EEEES-SCCSCGGGCC--HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhcCe---EEecCCcEEEEeccCCCCCeEE-------EEEec-cccCChHHCC--HHHHHHHHHHHHHHHHH
Confidence 6899999999886 9999999999999999999999 99999 9999999999 99999999999999999
Q ss_pred HHHHcCCCceeEEEecCCCCC----CccceEEEEEeccCCCCCCCccccccCCCCCChHHHHHHHHHHHHH
Q 028160 129 IMKATDADSFNLLVNNGAAAG----QVIFHTHIHIIPRKAHDCLWTSESLRRRPLKIDQETSQLADQVREK 195 (212)
Q Consensus 129 l~~~~~~~~~ni~~n~g~~ag----q~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~~~~e~~~la~~lr~a 195 (212)
+.+.+++++||+++|+|+.+| |.++|+|+||+||+.....+-.. .+.... +.+.+++|++||++
T Consensus 281 l~~~~~~~~yn~~~n~gp~~g~~~~q~v~HlHiHiiPR~~~~~Gfe~~--~~~~i~-~~~pE~~A~~LR~~ 348 (351)
T 1z84_A 281 IAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEIG--TGCYIN-PVFPEDVAKVMREV 348 (351)
T ss_dssp HHHHTTSCCEEEEEECCCTTCCGGGGGGCCCEEEEEECCCCCCHHHHH--HSCCEE-SSCHHHHHHHHHHC
T ss_pred HHHhcCCCCEEEEEeCCCccCCCCCCccceEEEEEEccCCCcCccccc--cCcccC-CccHHHHHHHHHhc
Confidence 999999999999999999887 79999999999999754321100 111111 34678889999863
No 24
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=99.91 E-value=1.2e-23 Score=169.85 Aligned_cols=119 Identities=17% Similarity=0.278 Sum_probs=105.5
Q ss_pred ceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcc-cccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEE
Q 028160 63 AVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSS-IVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLL 141 (212)
Q Consensus 63 ~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~r-Hv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~ 141 (212)
..++++.+.+.|++...| +++|+ ||||| + |+.++.||+ ++++.+++..++++++++.+.+++++||++
T Consensus 18 ~~~~~e~p~~~v~l~~~~-~~~H~-------LVIPk-~~H~~~l~dL~--~e~~~~l~~~~~~va~~l~~~~~~~g~N~~ 86 (149)
T 3i4s_A 18 TIDIGDLPLSKVLVIKDA-NYPWL-------LLVPR-RPDAVEIIDLD--EVQQAQLMTEISRVSRALKEITKCDKLNIA 86 (149)
T ss_dssp EEEEEECSSEEEEEESCT-TSCEE-------EEEEC-CTTCCSGGGSC--HHHHHHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CEEEEEcCceEEEECCCC-CCCEE-------EEEec-ccccCChhHCC--HHHHHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 578999999999998665 56689 99999 8 999999999 999999999999999999999999999986
Q ss_pred EecCCCCCCccceEEEEEeccCCCCCCCccccccCC--CCCChHHHHHHHHHHHHHHH
Q 028160 142 VNNGAAAGQVIFHTHIHIIPRKAHDCLWTSESLRRR--PLKIDQETSQLADQVREKLS 197 (212)
Q Consensus 142 ~n~g~~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~--~~~~~~e~~~la~~lr~al~ 197 (212)
.+||+|+|+|+|||||+.+|..||...|... ...+++|+++++++||++|.
T Consensus 87 -----~aGq~V~HlH~HvIPR~~~D~~~p~pvw~~~~~~~~~~eel~~~a~~Ir~~L~ 139 (149)
T 3i4s_A 87 -----ALGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFISALRRKIW 139 (149)
T ss_dssp -----ECCSSCCSCCEEEEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHHHHHHHHHC
T ss_pred -----ecCCcCCEEEEEEECCcCCCCCCCccccCCCcCCCCCHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999988777422 22247899999999999885
No 25
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=99.35 E-value=2.4e-13 Score=114.72 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=59.7
Q ss_pred EEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCC----CHHHHHHHHHHHH-HHHHHHHH-------H
Q 028160 65 KLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPF----QNEVVAAMCAKVP-LISNAIMK-------A 132 (212)
Q Consensus 65 iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~----~~ee~~~l~~~~~-~v~~~l~~-------~ 132 (212)
+|||+|.++||.|++|.+|||+ ||||| +|+.++.++.. +.+.+..|..++. .+.+.+.. .
T Consensus 23 ~v~edd~~~af~D~~P~a~~H~-------LVIPk-~h~~~~~~p~~al~d~~~Ll~~m~~la~~~~l~~~~~~~~~~~~~ 94 (204)
T 3sp4_A 23 VIYYDDDVVLVRDMFPKSKMHL-------LLMTR-DPHLTHVHPLEIMMKHRSLVEKLVSYVQGDLSGLIFDEARNCLSQ 94 (204)
T ss_dssp EEEECSSEEEEECSSCSSSSEE-------EEEEC-CTTTTTSCHHHHHHHCHHHHHHHHHHHHTTTHHHHHHHHHHHSCT
T ss_pred EEEEcCCEEEEeCCCCCCCccE-------EEEec-cccCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 9999999999999999999999 99999 99999887640 0122333333333 21111111 0
Q ss_pred c-CCCceeEEEecCCCCCCccceEEEEEeccC
Q 028160 133 T-DADSFNLLVNNGAAAGQVIFHTHIHIIPRK 163 (212)
Q Consensus 133 ~-~~~~~ni~~n~g~~agq~v~HlHiHIIPR~ 163 (212)
+ +..+|...++.|..+++++.|+|+|||-+.
T Consensus 95 ~~~~~~~~~~i~~GfHa~PSm~HLHLHVIS~D 126 (204)
T 3sp4_A 95 QLTNEALCNYIKVGFHAGPSMNNLHLHIMTLD 126 (204)
T ss_dssp TCCHHHHHTTEEEEEESSCSSSSCCEEEEESC
T ss_pred cCCcCCeeeeEeccCCCCCcccceeEEEeccC
Confidence 1 111222233444457889999999999764
No 26
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Probab=98.64 E-value=1.1e-07 Score=85.72 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=79.7
Q ss_pred CCCcccccccCCCCceEEE-----ECCeEEEEEcCCCCCc------------e-----------eeeeeeeeEEEEeCcc
Q 028160 49 NDCVFCKIIRGESPAVKLY-----EYDTCLCILDTNPLSL------------G-----------RFRLRLVVVAIISLSS 100 (212)
Q Consensus 49 ~~C~FC~ii~~e~p~~iv~-----e~d~~~a~ld~~P~~~------------G-----------h~~~~~~~~lVIPk~r 100 (212)
..|+||.-.....+..+.. .+-.+++|.+.+|..+ | ++ +|.+. +
T Consensus 61 ~~CpfCpg~~~~t~~e~~~~~~~~~~~~~~v~~N~fP~l~~~~~~~~~~~~~~l~~~~~~~G~~~V-------ii~sp-~ 132 (351)
T 1z84_A 61 SSCPFCIGREQECAPELFRVPDHDPNWKLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDV-------VIESP-V 132 (351)
T ss_dssp CCCTTSTTCGGGSSCEEEEESTTCSSCSEEEEECSSCSSBGGGTTTC--------CEEECBCEEEE-------EECCS-S
T ss_pred CCCcCCCCCcccCCcccccccccCCCceEEEEcCCCccccCCCCCcccccccchhhccccCcceEE-------EEeCC-C
Confidence 3699998554443433332 3456899999999983 4 44 88888 9
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEe
Q 028160 101 IVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 101 Hv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
|..++.+|+ .+++.++......-.+.|.+..+...+++..|.|+.+|.+++|.|.||+
T Consensus 133 H~~~l~~ls--~~e~~~vi~~~~~~~~~L~~~~~~~yv~iF~N~G~~aGaSl~HpH~QI~ 190 (351)
T 1z84_A 133 HSIQLSDID--PVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMM 190 (351)
T ss_dssp SSCCGGGSC--HHHHHHHHHHHHHHHHHHTTCTTCCEEEEEEEESGGGTCCCSSCEEEEE
T ss_pred CCCCcHHCC--HHHHHHHHHHHHHHHHHHhcccCCCEEEEEEEcCcccCCCCcCccceeE
Confidence 999999999 9999888888777666666555566788999999999999999999997
No 27
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Probab=98.62 E-value=1e-07 Score=84.46 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=72.1
Q ss_pred ccccC-CCCceEEEECCe----EEEEEcCC----CCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 55 KIIRG-ESPAVKLYEYDT----CLCILDTN----PLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 55 ~ii~~-e~p~~iv~e~d~----~~a~ld~~----P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
+|+.+ +.+.+++||++. |+++.|.. |...-|+ |+||+++++.++.||. .+.+.-|-.+....
T Consensus 142 nIl~~~~E~e~ilyeD~d~~~gFvllpDlkWd~~~~~~lhl-------LaI~~~~~I~SlrdL~--~~HlpLL~~M~~~~ 212 (301)
T 3bl9_A 142 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYL-------IAICHRRGIRSLRDLT--PEHLPLLRNILHQG 212 (301)
T ss_dssp HHHTTSSSGGGCCEEECCTTTCEEEEECTTCCSSCSTTCEE-------EEEESSSCCCSGGGCC--GGGHHHHHHHHHHH
T ss_pred HHhhCCCccccEEEecCCCCcCEEEeccCccCCCcccccEE-------EEEecccCCCChHHCC--HhHHHHHHHHHHHH
Confidence 45555 356799999988 99999987 7789999 9999933499999999 65544444444444
Q ss_pred HHHHHHHcC--CCceeEEEecCCCCCCccceEEEEEec-cCCC
Q 028160 126 SNAIMKATD--ADSFNLLVNNGAAAGQVIFHTHIHIIP-RKAH 165 (212)
Q Consensus 126 ~~~l~~~~~--~~~~ni~~n~g~~agq~v~HlHiHIIP-R~~~ 165 (212)
.+++.+.+| .+.+.++++.-| +++|+|+|||. .+.+
T Consensus 213 ~~~i~~~y~~~~~~~rlgfHy~P----S~yHLHlHvis~~~~s 251 (301)
T 3bl9_A 213 QEAILQRYRMKGDHLRVYLHYLP----SYYHLHVHFTALGFEA 251 (301)
T ss_dssp HHHHHHHHCCCGGGEEEEEESSC----SSSSCEEEEEETTSCC
T ss_pred HHHHHHhcCCChHHeEEEecCCC----CcceEEEEEEecCCCC
Confidence 555666655 456889988654 78999999994 4444
No 28
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Probab=98.56 E-value=1.5e-07 Score=84.70 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=70.6
Q ss_pred ccccC-CCCceEEEECCe----EEEEEcCC----CCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHH
Q 028160 55 KIIRG-ESPAVKLYEYDT----CLCILDTN----PLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLI 125 (212)
Q Consensus 55 ~ii~~-e~p~~iv~e~d~----~~a~ld~~----P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v 125 (212)
+|+.+ +.+.++||+++. |+++.|.. |...-|+ |+||+++++.++.||. .+.+.-|-.+....
T Consensus 189 nIl~~~~E~e~vlyeD~d~~~gFvllpDlKWd~~~~~~lhl-------LaI~~~~dI~SlRdL~--~~HlpLL~~M~~~~ 259 (350)
T 1vlr_A 189 NILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYL-------IAICHRRGIRSLRDLT--PEHLPLLRNILREG 259 (350)
T ss_dssp HHHTC----CCCSEEECCTTTCEEEEECTTCCSSCSTTCEE-------EEEESSSCCCSGGGCC--GGGHHHHHHHHHHH
T ss_pred HHhhCCCccccEEEecCCCCCCeEEeccCccCCCccccceE-------EEEecccCCCChHHCC--HhHHHHHHHHHHHH
Confidence 45544 356789999988 99999987 7789999 9999933499999999 65554444444445
Q ss_pred HHHHHHHcC--CCceeEEEecCCCCCCccceEEEEEec-cCCC
Q 028160 126 SNAIMKATD--ADSFNLLVNNGAAAGQVIFHTHIHIIP-RKAH 165 (212)
Q Consensus 126 ~~~l~~~~~--~~~~ni~~n~g~~agq~v~HlHiHIIP-R~~~ 165 (212)
.+++.+.+| .+.+.++++.-| +++|+|+|||. .+.+
T Consensus 260 ~~ii~~~yg~~~~~lRlgfHy~P----S~yHLHlHvis~~~~s 298 (350)
T 1vlr_A 260 QEAILKRYQVTGDRLRVYLHYLP----SYYHLHVHFTALGFEA 298 (350)
T ss_dssp HHHHHHHHCCCGGGEEEEEESSC----SSSSCEEEEEETTSCC
T ss_pred HHHHHHhcCCChHHeEEEecCCC----CcceEEEEEEeccCCC
Confidence 556666655 456888888654 78999999994 4444
No 29
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=96.08 E-value=0.02 Score=50.98 Aligned_cols=62 Identities=18% Similarity=0.075 Sum_probs=47.2
Q ss_pred EEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEecCCCCCCccceEEEEEe
Q 028160 94 AIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 94 lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
+|-.. +|-.++.+|+ .+++..+......-...|... ..-+.+.-|.|+.+|.+..|-|..|+
T Consensus 109 Ii~sp-~H~~~l~~l~--~~~~~~vi~~~~~r~~~l~~~--~~yV~iF~N~G~~~G~Sl~HpH~Qi~ 170 (348)
T 1gup_A 109 ICFSP-DHSKTLPELS--VAALTEIVKTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPGGQIW 170 (348)
T ss_dssp EESCS-CTTCCGGGSC--HHHHHHHHHHHHHHHHHHHHH--CSEEEEEEEESGGGTCSCCSSEEEEE
T ss_pred EEcCC-cccCChhhCC--HHHHHHHHHHHHHHHHHHhhc--CCEEEEecccCCcCCcCCCCCceeEE
Confidence 55566 8999999999 998888777776655555521 22234566999999999999999997
No 30
>2pof_A CDP-diacylglycerol pyrophosphatase; NYSGXRC, PFAM02611, PSI-2, phospholipid biosynthesis structural genomics, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.13.1.4
Probab=93.10 E-value=0.11 Score=44.23 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=51.0
Q ss_pred eEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCcee
Q 028160 64 VKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMKATD----ADSFN 139 (212)
Q Consensus 64 ~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~----~~~~n 139 (212)
..|.....++++-|. .-|.|. |+||. .-++-+.+=.-....--.++..++.....+.+.+| .+.+.
T Consensus 32 ~~Vd~~~gyvvlKD~--~Gp~qy-------LLmPt-~rItGIEsP~Ll~~~~pnYf~~AW~aR~~v~~~~g~pipd~~ls 101 (227)
T 2pof_A 32 AEVKPNAGYVVLKDL--NGPLQY-------LLMPT-YRINGTESPLLTDPSTPNFFWLAWQARDFMSKKYGQPVPDRAVS 101 (227)
T ss_dssp SEEETTTTEEEEECS--SSSSCE-------EEEES-SCCCSTTCGGGGSTTSCCHHHHHHHTTHHHHHHHTSCCCGGGEE
T ss_pred ceEccCCCEEEEeCC--CCCceE-------EEecc-ccccCccChhhcCCCCCcHHHHHHHHhHHHHHhhCCCCCccceE
Confidence 344455666777774 467888 99998 66766654110001112344444444444455554 34577
Q ss_pred EEEecCCCCCCccceEEEEEe
Q 028160 140 LLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 140 i~~n~g~~agq~v~HlHiHII 160 (212)
+.+|. ..|-+-.|+||||-
T Consensus 102 LaINS--~~gRSQnQLHIHIs 120 (227)
T 2pof_A 102 LAINS--RTGRTQNHFHIHIS 120 (227)
T ss_dssp EEEBC--GGGCSCCSCCEEEE
T ss_pred EEecC--CCCccccceeeehh
Confidence 88874 46788899999995
No 31
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=91.78 E-value=0.093 Score=39.45 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.7
Q ss_pred eEEeecccCCCCCCCCCCCCc--cchhhhhhhccC
Q 028160 9 AVLSSHLLPTGPAPCSSSSGV--SASFCAQQRLSH 41 (212)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 41 (212)
++.++|++|.+.|+-++.+|+ +|..||..+.+.
T Consensus 49 ~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~~~ 83 (112)
T 2qgp_A 49 ELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYL 83 (112)
T ss_dssp GEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHHTC
T ss_pred CcEEEEEeehhcCCCCChhhChhhCHHHHHHHccC
Confidence 589999999999999999998 999999988753
No 32
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=59.56 E-value=9.6 Score=28.69 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=20.7
Q ss_pred CCceeEEEecCCCCCCccceEEEEEe
Q 028160 135 ADSFNLLVNNGAAAGQVIFHTHIHII 160 (212)
Q Consensus 135 ~~~~ni~~n~g~~agq~v~HlHiHII 160 (212)
.+..++.+| +...|-.++|.|||+.
T Consensus 76 vDHVdi~~~-~gHpGve~PHyhI~l~ 100 (116)
T 3vg8_G 76 IDHVNMIPS-GPHPGVSEPHYHIELV 100 (116)
T ss_dssp CCEEEEEEC-CCCTTCCSCEEEEEEE
T ss_pred cceEEEecC-CCCCCcccCceEEEEE
Confidence 467899886 5568999999999986
No 33
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=33.91 E-value=1.5e+02 Score=22.26 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=44.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHcCCC--ceeEEE-ecCC-CCCCccceEEEEEeccCCCCCCCccccccCCCCC
Q 028160 105 TKELPFQNEVVAAMCAKVPLISNAIMKATDAD--SFNLLV-NNGA-AAGQVIFHTHIHIIPRKAHDCLWTSESLRRRPLK 180 (212)
Q Consensus 105 l~dL~~~~ee~~~l~~~~~~v~~~l~~~~~~~--~~ni~~-n~g~-~agq~v~HlHiHIIPR~~~d~~w~~~~~~~~~~~ 180 (212)
+..++ .+.+ ..+.+.+...|.+.++++ .|.+-. +.-. ..|+..|-+|+.+++|.
T Consensus 21 ~rgi~--~e~v---~~lS~~Lid~La~i~~~~~e~fTle~i~s~~i~~G~~MP~VeV~~fgRt----------------- 78 (122)
T 1u9d_A 21 FRAVE--AHIV---ESLVPTLLNELSSLLSTARNAFTFELINTQYFAEGGVYPMVEVLWFGRE----------------- 78 (122)
T ss_dssp EESSC--HHHH---HHHHHHHHHHHHHHHTCCGGGCEEEECCCCCCCTTCCCCEEEEEESCCC-----------------
T ss_pred ECCCC--HHHH---HHHhHHHHHHHHHHHCCCcccEEEEEeeeEEEecCCCCCEEEEEEcCCC-----------------
Confidence 34455 5544 445556677777777765 455532 2111 23466666777666431
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 028160 181 IDQETSQLADQVREKLSNI 199 (212)
Q Consensus 181 ~~~e~~~la~~lr~al~~~ 199 (212)
++..+++++.|.+++.+.
T Consensus 79 -~EqK~~la~~IT~av~~~ 96 (122)
T 1u9d_A 79 -QQTQDQIAQVITDQIRQL 96 (122)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHh
Confidence 677899999999999877
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=31.30 E-value=41 Score=23.28 Aligned_cols=38 Identities=26% Similarity=0.487 Sum_probs=25.7
Q ss_pred cccCC-CCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCccccccc
Q 028160 56 IIRGE-SPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVST 105 (212)
Q Consensus 56 ii~~e-~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l 105 (212)
+..|+ ..+++.+.|.+|+++.+.+ ++. .+|.| .++..+
T Consensus 30 L~tGd~l~G~i~WQD~~cl~L~~~~----~~~-------~LI~R-~AI~~I 68 (72)
T 3hfn_A 30 LVTGDAITGRVLWQDPTCVCIADEN----SRQ-------TTIWK-QAIAYL 68 (72)
T ss_dssp ETTSCEEEEEEEEECSSEEEEEC-------CE-------EEEEG-GGEEEE
T ss_pred ecCCCEEEEEEEEECCCEEEEEcCC----CCe-------EEEEe-eeeEEE
Confidence 34444 3578999999999999766 566 77778 776554
No 35
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=25.27 E-value=72 Score=21.89 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=25.8
Q ss_pred ccCC-CCceEEEECCeEEEEEcCCCCCceeeeeeeeeEEEEeCccccccc
Q 028160 57 IRGE-SPAVKLYEYDTCLCILDTNPLSLGRFRLRLVVVAIISLSSIVVST 105 (212)
Q Consensus 57 i~~e-~p~~iv~e~d~~~a~ld~~P~~~Gh~~~~~~~~lVIPk~rHv~~l 105 (212)
.+|+ ..+++.+.|.+|+++.+.+ ++. .+|.| .++..+
T Consensus 29 ~tG~~l~G~i~WQD~~cl~L~~~~----~~~-------~LI~r-~AI~~I 66 (70)
T 3hfo_A 29 LTGDSLFGTIRWQDTDGLGLVDDS----ERS-------TIVRL-AAIAYI 66 (70)
T ss_dssp TTSCEEEEEEEEECSSEEEEECTT----CCE-------EEEEG-GGEEEE
T ss_pred cCCCEEEEEEEEeCCCEEEEEcCC----CCe-------EEEEe-eeeEEE
Confidence 4444 3578999999999998764 566 67777 665443
No 36
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=24.53 E-value=59 Score=25.98 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhhcccccC
Q 028160 181 IDQETSQLADQVREKLSNICECSSKGQESS 210 (212)
Q Consensus 181 ~~~e~~~la~~lr~al~~~~~~~~~~~~~~ 210 (212)
+++|.++.++.++++++.+..+.++.|+.+
T Consensus 97 Se~eA~~F~~~~~~ale~l~~~~~~~~~~~ 126 (168)
T 1i2h_A 97 SEHHLSKFAEKFQEFKEAARLAKEKSQEKM 126 (168)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC--CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 478999999999999999999999988853
No 37
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A* 1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Probab=24.35 E-value=1.1e+02 Score=26.21 Aligned_cols=36 Identities=14% Similarity=-0.064 Sum_probs=20.3
Q ss_pred EEEeCcccccccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 028160 94 AIISLSSIVVSTKELPFQNEVVAAMCAKVPLISNAIMK 131 (212)
Q Consensus 94 lVIPk~rHv~~l~dL~~~~ee~~~l~~~~~~v~~~l~~ 131 (212)
.=.|| . ++=+.-+..++....+..+.++.....|.+
T Consensus 88 FsaPK-S-vSila~~~~d~~i~~Ah~~AV~~al~~lE~ 123 (293)
T 1omh_A 88 FSAPK-S-VSLQALVAGDAEIIKAHDRAVARTLEQAEA 123 (293)
T ss_dssp EECCH-H-HHHHHHTSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EeCCc-c-HHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 44566 2 322233322356666777777777777776
No 38
>2czs_A DHC2, cytochrome C, putative; diheme, C-type cytochrome, electron transport; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=23.74 E-value=21 Score=25.26 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=18.7
Q ss_pred cchhhh--hhhccCCccCCC------CCCCccccccc
Q 028160 30 SASFCA--QQRLSHSQESGH------ENDCVFCKIIR 58 (212)
Q Consensus 30 ~~~~~~--~~~~~~~~~~~~------~~~C~FC~ii~ 58 (212)
-|..|+ ......|+.... .+.|+||....
T Consensus 36 ~C~~CH~~~~~giplP~~HPvkPk~gp~rCLFCHk~~ 72 (80)
T 2czs_A 36 QCVECHHEKPGGIPFPKNHPVKPADGPMRCLFCHKFK 72 (80)
T ss_dssp HHTTTSCSSSSSCCCCTTCCCCCSSSCCCHHHHSCBS
T ss_pred cchhhcccCCCCCCCCCCCCCCCccCCceeeeecCcc
Confidence 588898 444456666332 23799998653
Done!