Query 028161
Match_columns 212
No_of_seqs 210 out of 1227
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15022 ferritin-like protein 100.0 4.3E-34 9.3E-39 238.1 14.4 112 90-208 1-112 (167)
2 KOG2332 Ferritin [Inorganic io 100.0 1.8E-34 3.9E-39 242.0 9.2 125 80-208 2-126 (178)
3 cd00904 Ferritin Ferritin iron 100.0 3E-32 6.5E-37 223.7 14.2 113 92-208 1-113 (160)
4 PRK10304 ferritin; Provisional 100.0 9.6E-32 2.1E-36 223.1 14.3 112 90-208 1-112 (165)
5 cd01056 Euk_Ferritin eukaryoti 100.0 1E-29 2.2E-34 208.3 14.6 112 92-208 1-113 (161)
6 COG1528 Ftn Ferritin-like prot 100.0 2.5E-29 5.4E-34 208.9 14.0 112 90-208 1-112 (167)
7 cd01055 Nonheme_Ferritin nonhe 99.9 5.8E-26 1.2E-30 183.3 14.2 110 92-208 1-110 (156)
8 PRK10635 bacterioferritin; Pro 99.9 2.7E-22 5.8E-27 165.6 13.9 111 90-208 2-112 (158)
9 TIGR00754 bfr bacterioferritin 99.9 9.4E-21 2E-25 154.3 14.0 110 91-208 3-112 (157)
10 cd00907 Bacterioferritin Bacte 99.8 1.1E-18 2.4E-23 139.7 13.9 109 92-208 3-111 (153)
11 PF00210 Ferritin: Ferritin-li 99.8 5.6E-18 1.2E-22 131.4 11.5 104 96-207 1-109 (142)
12 cd01041 Rubrerythrin Rubreryth 99.8 6.1E-18 1.3E-22 134.4 11.9 103 95-209 2-105 (134)
13 COG2193 Bfr Bacterioferritin ( 99.7 2.2E-16 4.7E-21 129.5 13.5 111 90-208 2-112 (157)
14 cd01052 DPSL DPS-like protein, 99.7 1.4E-15 3.1E-20 121.1 13.3 108 92-206 4-121 (148)
15 cd01046 Rubrerythrin_like rubr 99.6 5.8E-15 1.3E-19 116.7 11.7 92 95-208 2-93 (123)
16 PRK13456 DNA protection protei 99.2 6.8E-10 1.5E-14 94.4 13.1 113 92-207 18-136 (186)
17 cd00657 Ferritin_like Ferritin 98.7 1.4E-07 3E-12 69.1 10.5 98 98-205 2-104 (130)
18 cd01043 DPS DPS protein, ferri 98.7 2.2E-07 4.7E-12 73.8 10.6 104 98-208 2-113 (139)
19 cd07908 Mn_catalase_like Manga 98.6 7.7E-07 1.7E-11 72.0 13.0 111 91-204 10-127 (154)
20 cd01045 Ferritin_like_AB Uncha 98.2 6.6E-06 1.4E-10 62.9 8.2 103 98-205 2-113 (139)
21 PF02915 Rubrerythrin: Rubrery 98.0 4.9E-05 1.1E-09 58.2 9.1 103 97-204 1-110 (137)
22 cd01051 Mn_catalase Manganese 97.9 0.00032 7E-09 58.0 12.7 104 94-206 20-127 (156)
23 COG1633 Uncharacterized conser 97.3 0.0031 6.6E-08 53.3 11.0 107 93-207 23-142 (176)
24 PRK09448 DNA starvation/statio 97.2 0.0085 1.8E-07 49.7 12.0 102 92-201 20-130 (162)
25 cd01044 Ferritin_CCC1_N Ferrit 97.0 0.0021 4.6E-08 50.4 6.4 97 98-202 2-100 (125)
26 COG2406 Protein distantly rela 96.7 0.053 1.1E-06 45.3 12.4 110 93-204 16-130 (172)
27 PF13668 Ferritin_2: Ferritin- 96.6 0.045 9.7E-07 43.1 11.1 104 97-206 4-110 (137)
28 COG1592 Rubrerythrin [Energy p 96.5 0.03 6.6E-07 47.1 10.1 61 94-156 4-64 (166)
29 COG0783 Dps DNA-binding ferrit 96.0 0.19 4.1E-06 41.9 12.0 108 93-208 14-129 (156)
30 PF09537 DUF2383: Domain of un 95.8 0.062 1.4E-06 40.9 8.0 103 94-201 1-109 (111)
31 PRK12775 putative trifunctiona 94.6 0.33 7.3E-06 50.7 11.3 108 93-206 859-969 (1006)
32 TIGR02284 conserved hypothetic 94.5 0.3 6.4E-06 39.5 8.5 99 96-202 2-109 (139)
33 cd01048 Ferritin_like_AB2 Unch 93.5 1.8 3.8E-05 34.6 11.1 100 97-206 3-110 (135)
34 cd01042 DMQH Demethoxyubiquino 92.0 0.56 1.2E-05 39.4 6.5 94 104-203 10-107 (165)
35 PF03232 COQ7: Ubiquinone bios 85.0 3.1 6.6E-05 35.1 6.3 97 103-204 11-111 (172)
36 PF12902 Ferritin-like: Ferrit 83.9 4.7 0.0001 35.3 7.2 62 99-162 1-62 (227)
37 cd01041 Rubrerythrin Rubreryth 83.8 11 0.00023 29.6 8.7 60 93-154 72-132 (134)
38 cd01046 Rubrerythrin_like rubr 83.7 5 0.00011 31.4 6.7 59 93-153 62-120 (123)
39 cd07910 MiaE MiaE tRNA-modifyi 83.7 7.9 0.00017 33.1 8.2 68 94-167 18-85 (180)
40 PF02915 Rubrerythrin: Rubrery 79.3 12 0.00027 28.0 7.3 52 94-150 84-135 (137)
41 cd01045 Ferritin_like_AB Uncha 77.4 10 0.00023 28.3 6.4 56 91-151 83-138 (139)
42 cd01055 Nonheme_Ferritin nonhe 75.2 17 0.00037 28.8 7.4 58 94-153 80-137 (156)
43 cd07908 Mn_catalase_like Manga 75.0 12 0.00025 29.9 6.4 55 92-151 99-153 (154)
44 PF14530 DUF4439: Domain of un 71.3 53 0.0011 26.5 11.7 94 98-201 1-94 (131)
45 cd00907 Bacterioferritin Bacte 70.1 37 0.0008 26.6 8.2 57 94-152 81-137 (153)
46 cd00657 Ferritin_like Ferritin 68.4 33 0.00071 24.2 7.0 53 94-151 77-129 (130)
47 COG2941 CAT5 Ubiquinone biosyn 68.1 27 0.00059 30.4 7.3 54 104-162 51-104 (204)
48 COG1633 Uncharacterized conser 66.6 33 0.00071 28.9 7.5 63 88-155 107-169 (176)
49 PF04305 DUF455: Protein of un 65.4 1E+02 0.0022 27.6 10.8 74 91-168 63-136 (253)
50 PF07875 Coat_F: Coat F domain 61.7 50 0.0011 22.7 7.7 56 98-158 5-60 (64)
51 PF03405 FA_desaturase_2: Fatt 59.5 1.5E+02 0.0033 27.6 11.4 115 90-207 57-181 (330)
52 cd01050 Acyl_ACP_Desat Acyl AC 59.4 1.4E+02 0.0031 27.3 11.1 112 91-204 56-173 (297)
53 PRK10635 bacterioferritin; Pro 56.2 60 0.0013 26.7 7.2 60 91-152 79-138 (158)
54 COG3546 Mn-containing catalase 53.3 57 0.0012 29.8 7.0 65 92-161 18-85 (277)
55 cd07652 F-BAR_Rgd1 The F-BAR ( 51.2 97 0.0021 27.0 8.0 34 126-159 20-53 (234)
56 PF00210 Ferritin: Ferritin-li 48.0 1.1E+02 0.0025 22.7 7.4 59 94-154 80-138 (142)
57 PRK12775 putative trifunctiona 47.9 62 0.0013 34.2 7.3 57 95-155 942-998 (1006)
58 cd07610 FCH_F-BAR The Extended 47.7 69 0.0015 26.0 6.3 35 126-160 15-49 (191)
59 PF11020 DUF2610: Domain of un 46.3 20 0.00043 27.0 2.5 20 192-211 49-68 (82)
60 PF11860 DUF3380: Protein of u 45.9 38 0.00082 28.8 4.5 60 95-156 76-135 (175)
61 cd07648 F-BAR_FCHO The F-BAR ( 44.3 80 0.0017 27.5 6.5 34 126-159 20-53 (261)
62 cd07647 F-BAR_PSTPIP The F-BAR 43.9 68 0.0015 27.8 6.0 31 126-156 20-50 (239)
63 TIGR00754 bfr bacterioferritin 41.3 1.8E+02 0.004 23.1 8.2 59 93-153 81-139 (157)
64 smart00055 FCH Fes/CIP4 homolo 39.7 1.4E+02 0.0029 21.2 7.3 28 127-154 25-52 (87)
65 cd07674 F-BAR_FCHO1 The F-BAR 37.5 96 0.0021 27.3 6.0 31 127-157 21-51 (261)
66 PF00611 FCH: Fes/CIP4, and EF 37.5 73 0.0016 22.5 4.4 31 126-156 24-54 (91)
67 PF05067 Mn_catalase: Manganes 36.2 1.1E+02 0.0023 28.0 6.1 114 92-209 18-169 (283)
68 PRK13456 DNA protection protei 36.0 2.9E+02 0.0062 23.8 8.3 57 94-153 107-163 (186)
69 cd01044 Ferritin_CCC1_N Ferrit 32.8 1.8E+02 0.0039 22.4 6.2 47 96-153 78-124 (125)
70 cd01051 Mn_catalase Manganese 32.7 2.3E+02 0.005 23.2 7.1 60 91-155 96-155 (156)
71 PF06744 DUF1215: Protein of u 31.9 1.7E+02 0.0038 22.6 6.0 79 88-166 24-106 (125)
72 PRK10304 ferritin; Provisional 31.8 2.9E+02 0.0064 22.7 7.9 63 94-156 82-145 (165)
73 PF10097 DUF2335: Predicted me 29.5 1.2E+02 0.0025 20.5 4.0 28 126-153 12-39 (50)
74 PF06175 MiaE: tRNA-(MS[2]IO[6 28.3 3E+02 0.0064 24.7 7.4 73 93-167 26-137 (240)
75 PF11553 DUF3231: Protein of u 27.9 3.2E+02 0.007 22.0 8.6 39 129-167 125-163 (166)
76 cd07673 F-BAR_FCHO2 The F-BAR 27.7 1.9E+02 0.004 25.8 6.2 33 127-159 28-60 (269)
77 cd07651 F-BAR_PombeCdc15_like 26.5 91 0.002 26.8 3.9 33 126-158 20-52 (236)
78 PRK12759 bifunctional gluaredo 25.9 4.5E+02 0.0097 24.8 8.7 76 113-198 255-331 (410)
79 COG2833 Uncharacterized protei 23.5 4.9E+02 0.011 23.6 7.9 73 91-168 72-144 (268)
80 PF05974 DUF892: Domain of unk 23.3 4.1E+02 0.0089 21.6 12.0 109 93-209 4-125 (159)
81 cd07657 F-BAR_Fes_Fer The F-BA 21.8 4.9E+02 0.011 22.8 7.6 28 127-154 21-48 (237)
82 cd07653 F-BAR_CIP4-like The F- 20.3 2.1E+02 0.0044 24.5 4.9 47 113-159 7-53 (251)
No 1
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=4.3e-34 Score=238.14 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=105.9
Q ss_pred cccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCC
Q 028161 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (212)
|.+++++.+||+|||.|++|||+|++||+||+ +.+|||||+||+.||+|||+||+||++||++|||+|.+++|++|+.
T Consensus 1 m~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~ 78 (167)
T PRK15022 1 MATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGE 78 (167)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCcc
Confidence 46789999999999999999999999999998 5699999999999999999999999999999999999999999986
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 170 ~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
+ |++++++|+.+|+|||.||+.|++|+++|.+++
T Consensus 79 ~-----~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~ 112 (167)
T PRK15022 79 K-----LNSLEELFQKTLEEYEQRSSTLAQLADEAKALN 112 (167)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5 456899999999999999999999999998765
No 2
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=241.96 Aligned_cols=125 Identities=54% Similarity=0.800 Sum_probs=119.5
Q ss_pred CCCcchhhhccccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 028161 80 VSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (212)
Q Consensus 80 ~~~~~s~~Rq~~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V 159 (212)
...+.+++||+++++++.++|.|||+|+++||+|++|++||+||+++++||++||.++|+|||+||++||+|+|+|||+|
T Consensus 2 ~~~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i 81 (178)
T KOG2332|consen 2 NTKMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRI 81 (178)
T ss_pred CccchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCcc
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 160 KLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 160 ~l~~I~~P~~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
++++|.+|. ..+|++.+++|+.||.+||.+++.|++||.+|.+.|
T Consensus 82 ~l~~i~~P~----~~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~kn 126 (178)
T KOG2332|consen 82 ELQDIKKPE----LDEWGKGLEALEAALHLEKNVNQSLLELHSLATKKN 126 (178)
T ss_pred ccccccccc----cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999995 478999999999999999999999999999998875
No 3
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=3e-32 Score=223.66 Aligned_cols=113 Identities=53% Similarity=0.851 Sum_probs=107.1
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCC
Q 028161 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (212)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f 171 (212)
+++|+++||+|||.|+++||+|++||+||++++|||||||+||+.+|+|||+||++|++||++|||+|+++.|++|..
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~-- 78 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPS-- 78 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcc--
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 172 ~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
.+|++++++|+.+|++|+.+++.|++++++|.+.+
T Consensus 79 --~~~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~ 113 (160)
T cd00904 79 --DEWGGTLDAMEAALKLEKFVNQALLDLHELASEEK 113 (160)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 23567899999999999999999999999999765
No 4
>PRK10304 ferritin; Provisional
Probab=99.98 E-value=9.6e-32 Score=223.06 Aligned_cols=112 Identities=21% Similarity=0.350 Sum_probs=106.5
Q ss_pred cccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCC
Q 028161 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (212)
+++++++.+||+|||.|++|+|+|++|++||+ ++||+|||+||+.+|.|||+||+||++||++|||+|.+++|++|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 47899999999999999999999999999999 6899999999999999999999999999999999999999999986
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 170 ~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
+| .++.++|+.+|++|+.+++.|++++++|.+.+
T Consensus 79 ~~-----~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~ 112 (165)
T PRK10304 79 EY-----SSLDELFQETYKHEQLITQKINELAHAAMTNQ 112 (165)
T ss_pred cc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 54 56899999999999999999999999999875
No 5
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=99.97 E-value=1e-29 Score=208.25 Aligned_cols=112 Identities=57% Similarity=0.909 Sum_probs=105.3
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCC-CC
Q 028161 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP-SE 170 (212)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~-~~ 170 (212)
+++|+.+||+|||.|++|+|+|++||.||++.++|++|||+||+.+|+|||+||++|++||++|||+|++++|++|. ..
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~ 80 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE 80 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence 46899999999999999999999999999976669999999999999999999999999999999999999999997 43
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 171 f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
|.++.++|+.+|++|+.+++.|++++++|.+.+
T Consensus 81 -----~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~ 113 (161)
T cd01056 81 -----WGSGLEALELALDLEKLVNQSLLDLHKLASEHN 113 (161)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcC
Confidence 467999999999999999999999999999854
No 6
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.5e-29 Score=208.93 Aligned_cols=112 Identities=29% Similarity=0.439 Sum_probs=106.3
Q ss_pred cccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCC
Q 028161 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (212)
+.++++..+||+|||.|++++|+|++||+||+ +.+|||+|+||+.||.||+.||+||++|++.||++|.+..|..|+.
T Consensus 1 mls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~ 78 (167)
T COG1528 1 MLSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPN 78 (167)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCcc
Confidence 36789999999999999999999999999999 5799999999999999999999999999999999999999999998
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 170 ~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
+|. ++.++|+.+|+||+.||..|++|.++|.+.+
T Consensus 79 ~~~-----s~~e~f~~tlehEq~vt~~I~~L~~~a~~~k 112 (167)
T COG1528 79 KFS-----SLKELFEKTLEHEQKVTSSINELAEVAREEK 112 (167)
T ss_pred ccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 764 5899999999999999999999999998765
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=99.94 E-value=5.8e-26 Score=183.29 Aligned_cols=110 Identities=43% Similarity=0.628 Sum_probs=103.6
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCC
Q 028161 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (212)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f 171 (212)
+++|+++||+||+.|+.++|+|++||.||++ +++|||++||+.+|+||++||+++++||++|||+|++++|++|...
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~- 77 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSE- 77 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcc-
Confidence 4789999999999999999999999999995 5999999999999999999999999999999999999999998753
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 172 ~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
|+++.++|+.+|++|+.+++.|++++++|.+.|
T Consensus 78 ----~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~ 110 (156)
T cd01055 78 ----FESLLEVFEAALEHEQKVTESINNLVDLALEEK 110 (156)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999998765
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.89 E-value=2.7e-22 Score=165.58 Aligned_cols=111 Identities=20% Similarity=0.122 Sum_probs=104.9
Q ss_pred cccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCC
Q 028161 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (212)
+.++++...||++++.|+.|+++|+.+|.+|+ +||+++++.+|+.+|.|||+||++|++||+++||.|+++++++|..
T Consensus 2 ~~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~ 79 (158)
T PRK10635 2 KGDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI 79 (158)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 46889999999999999999999999999999 8999999999999999999999999999999999999999988876
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 170 ~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
. .|+.++|+.+|++|+.+++.|++++++|.+.+
T Consensus 80 g------~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~ 112 (158)
T PRK10635 80 G------EDVEEMLRSDLRLELEGAKDLREAIAYADSVH 112 (158)
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4 47899999999999999999999999998643
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.86 E-value=9.4e-21 Score=154.25 Aligned_cols=110 Identities=18% Similarity=0.111 Sum_probs=102.8
Q ss_pred ccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCC
Q 028161 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (212)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~ 170 (212)
-++++.++||+||+.|+.++++|+.|+.|+. +|+++|++.||++++.||++||++|.+||+.+||.|.+++++.|...
T Consensus 3 ~~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~ 80 (157)
T TIGR00754 3 GDPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG 80 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC
Confidence 3689999999999999999999999999996 78999999999999999999999999999999999999999888764
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 171 f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
.++.++++.++++|+.+++.|++++++|.+.+
T Consensus 81 ------~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~ 112 (157)
T TIGR00754 81 ------ETVREMLEADLALELDVLNRLKEAIAYAEEVR 112 (157)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36889999999999999999999999997654
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.80 E-value=1.1e-18 Score=139.74 Aligned_cols=109 Identities=21% Similarity=0.180 Sum_probs=100.8
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCC
Q 028161 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (212)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f 171 (212)
++++++.||++|+.|+.+++.|+.++.+|+ +++++|+++||+.++.||++||+.+.+|++.+||.|.+..++.|...
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~- 79 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG- 79 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC-
Confidence 678999999999999999999999999998 67999999999999999999999999999999999999888777653
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 172 ~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
.++.++++.++++|+.+++.+++++++|++.+
T Consensus 80 -----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~ 111 (153)
T cd00907 80 -----EDVPEMLENDLALEYEAIAALNEAIALCEEVG 111 (153)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 25789999999999999999999999998753
No 11
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.76 E-value=5.6e-18 Score=131.36 Aligned_cols=104 Identities=37% Similarity=0.421 Sum_probs=94.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----ccCCCCC
Q 028161 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSE 170 (212)
Q Consensus 96 e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~-----I~~P~~~ 170 (212)
+++||++++.|+.+++.|+.++.+|+ +.+++|+++||+++++++++|++++++|+..|||.|.... ++.|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 47899999999999999999999999 7899999999999999999999999999999999665544 555553
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028161 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLY 207 (212)
Q Consensus 171 f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~ 207 (212)
|.++.++|+.+++.|+.+.+.+.++++.|.+.
T Consensus 78 -----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~ 109 (142)
T PF00210_consen 78 -----WTDPREALEAALEDEKEIIEEYRELIKLAEKE 109 (142)
T ss_dssp -----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999875
No 12
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.76 E-value=6.1e-18 Score=134.41 Aligned_cols=103 Identities=20% Similarity=0.235 Sum_probs=94.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCCCcc
Q 028161 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (212)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f~~~ 174 (212)
....||+.+..|+.++++|++|+.|++ ++|++|+|+||+.++.+|+.||+++++|++++||.|. .|...
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~---- 70 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIG---- 70 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCC----
Confidence 357899999999999999999999999 5699999999999999999999999999999999999 44433
Q ss_pred ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCc
Q 028161 175 EKGDALYAMELALSLEKL-TNEKLLSLHSVICLYHL 209 (212)
Q Consensus 175 e~~d~lealE~AL~lEK~-vt~~L~~L~~lA~~~~~ 209 (212)
|+++.+.|+.++++|+. +++.|.+++++|.+.|-
T Consensus 71 -~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d 105 (134)
T cd01041 71 -IGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGF 105 (134)
T ss_pred -cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999996 88999999999998874
No 13
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.2e-16 Score=129.51 Aligned_cols=111 Identities=20% Similarity=0.152 Sum_probs=104.8
Q ss_pred cccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCC
Q 028161 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (212)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (212)
+..++++..||+++..||.+.++|+.++..+. |||+..++++|+++|.+|+.||++++++|++.+|.|+++++.+-..
T Consensus 2 kG~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~i 79 (157)
T COG2193 2 KGDPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRI 79 (157)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccccc
Confidence 45689999999999999999999999999999 8999999999999999999999999999999999999999998665
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 170 ~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
+ .++.++++..|.+|..+.+.|.+.+..|++.+
T Consensus 80 G------~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~ 112 (157)
T COG2193 80 G------ETVKEMLEADLALEYEARDALKEAIAYCEEVQ 112 (157)
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 57999999999999999999999999999854
No 14
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.67 E-value=1.4e-15 Score=121.06 Aligned_cols=108 Identities=21% Similarity=0.185 Sum_probs=96.1
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc-------
Q 028161 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI------- 164 (212)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I------- 164 (212)
.+++.+.||++++.|+.++++|+.++.++. +++++++++||++++.||++||+++.+||+.+||+|..+..
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 357899999999999999999999999999 67899999999999999999999999999999999998653
Q ss_pred ---cCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 165 ---MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICL 206 (212)
Q Consensus 165 ---~~P~~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~ 206 (212)
+.|.. .+.++.++++.++++|+.+++.+++++++|.+
T Consensus 82 ~~~~~~~~-----~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~ 121 (148)
T cd01052 82 CKCGYLPP-----DPPDVKGILKVNLKAERCAIKVYKELCDMTHG 121 (148)
T ss_pred ccccCCCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22221 23578999999999999999999999999854
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.62 E-value=5.8e-15 Score=116.66 Aligned_cols=92 Identities=22% Similarity=0.159 Sum_probs=83.9
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCCCcc
Q 028161 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (212)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f~~~ 174 (212)
++..||+|++.|+++++.|++|+.|++ ..|++|+|+||+.++.+|+.||+++.+++ |+ |+
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i~--------- 61 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIAMEEAEHAARFAELL---GK------VS--------- 61 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------Cc---------
Confidence 678999999999999999999999999 56999999999999999999999999966 22 21
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 175 EKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 175 e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
+|+.+.|+.++++|+.+++.|.+++++|.+.|
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~eg 93 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAEG 93 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcC
Confidence 36889999999999999999999999999876
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.16 E-value=6.8e-10 Score=94.36 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=96.1
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecccc--C-CC
Q 028161 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM--Q-PP 168 (212)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~--~-P~ 168 (212)
.+++.+.||+.+..|+.+.|.|..+++... +.--++++.||.+...||+.||+.|.++|.+.||.|.+.+-+ . ..
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 468899999999999999999999999999 677889999999999999999999999999999999887662 1 00
Q ss_pred C---CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028161 169 S---EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLY 207 (212)
Q Consensus 169 ~---~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~ 207 (212)
. +++ .+..|+.++++..|.-|+...+.++++++.+...
T Consensus 96 ~~~~~~p-~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~k 136 (186)
T PRK13456 96 CPDAYLP-ENPTDPKEILKVLLEAERCAIRTYTEICDMTAGK 136 (186)
T ss_pred CccccCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 111 1124799999999999999999999999988743
No 17
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.75 E-value=1.4e-07 Score=69.08 Aligned_cols=98 Identities=24% Similarity=0.231 Sum_probs=83.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----ccCCCCCCC
Q 028161 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSEFD 172 (212)
Q Consensus 98 aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~-----I~~P~~~f~ 172 (212)
.||..+..|+.+.+.|..++..++ .+++..+|...+.+|+.|++.|.+++..+|+.+.... ...+..
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~--- 73 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPK--- 73 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCC---
Confidence 689999999999999999999886 5789999999999999999999999999999987553 111111
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVIC 205 (212)
Q Consensus 173 ~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~ 205 (212)
...+..+++..++..|+.....+..+.+.+.
T Consensus 74 --~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~ 104 (130)
T cd00657 74 --TSDDPAEALRAALEVEARAIAAYRELIEQAD 104 (130)
T ss_pred --CccCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2256789999999999999999998887764
No 18
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=98.69 E-value=2.2e-07 Score=73.80 Aligned_cols=104 Identities=18% Similarity=0.073 Sum_probs=89.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc--------ccCCCC
Q 028161 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------IMQPPS 169 (212)
Q Consensus 98 aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~--------I~~P~~ 169 (212)
.||..+..++..+..|....-+.. +.++..+..+|.+.++++++|+..+.++|...||.|..+. ++.++.
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 588888999988888887666666 7899999999999999999999999999999999998774 554442
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 170 ~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
.+ -++.++++..++.|..+...+++.++.|++.+
T Consensus 80 ~~-----~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~ 113 (139)
T cd01043 80 GV-----LSAKEMVAELLEDYETLIEELREAIELADEAG 113 (139)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 21 35789999999999999999999999998653
No 19
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=98.65 E-value=7.7e-07 Score=71.99 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=88.0
Q ss_pred ccHHHHHHHHhhhh---hhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCC
Q 028161 91 YEDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP 167 (212)
Q Consensus 91 ~s~e~e~aLNeQIn---~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P 167 (212)
-+++.-..|++++. .|+.+..+|+..+.... + +.+.+++.|...+.+|+.|++.|.+++.++||.+.+......
T Consensus 10 ~~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~--~-~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~ 86 (154)
T cd07908 10 PNPRYAELLLDDYAGTNSELTAISQYIYQHLISE--E-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD 86 (154)
T ss_pred CChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc
Confidence 45667788888888 99999999999998876 2 679999999999999999999999999999999875432110
Q ss_pred C-CCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 168 P-SEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVI 204 (212)
Q Consensus 168 ~-~~f~~---~e~~d~lealE~AL~lEK~vt~~L~~L~~lA 204 (212)
. ..|.. ....++.++++.++..|+...+.+.++....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~ 127 (154)
T cd07908 87 KFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI 127 (154)
T ss_pred cCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 00000 0124688999999999999999999987654
No 20
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.23 E-value=6.6e-06 Score=62.92 Aligned_cols=103 Identities=25% Similarity=0.170 Sum_probs=79.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CeeeeccccCCCCCC----
Q 028161 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG--GKVKLHSIMQPPSEF---- 171 (212)
Q Consensus 98 aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RG--G~V~l~~I~~P~~~f---- 171 (212)
.||..|..|..+...|..++..++. +++..+|+..+.+|+.|++.|.+.+..+| +.+.+..-.......
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPE 76 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhh
Confidence 6899999999999999999999873 38999999999999999999999999997 333332111000000
Q ss_pred ---CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 172 ---DHAEKGDALYAMELALSLEKLTNEKLLSLHSVIC 205 (212)
Q Consensus 172 ---~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~ 205 (212)
.-....+..++++.++.+|+.....+..+.+.+.
T Consensus 77 ~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~ 113 (139)
T cd01045 77 FKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAE 113 (139)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0012257899999999999999999998887654
No 21
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.01 E-value=4.9e-05 Score=58.23 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=81.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccC-------CCC
Q 028161 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ-------PPS 169 (212)
Q Consensus 97 ~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~-------P~~ 169 (212)
+.|+..|..|..+...|..++.-+.++ + |.+.+.|+..+.+|++|+..|.+.+..+++.+....... +..
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 368889999999999999999999954 6 889999999999999999999999999987654431111 111
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVI 204 (212)
Q Consensus 170 ~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA 204 (212)
.+... .++..+++.++..|+.....+..+...+
T Consensus 78 ~~~~~--~~~~~~l~~a~~~E~~~~~~Y~~~a~~~ 110 (137)
T PF02915_consen 78 EEETD--ENLEEALEMAIKEEKDAYEFYAELARKA 110 (137)
T ss_dssp CSSHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred hhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 11111 2578999999999999988888876654
No 22
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=97.90 E-value=0.00032 Score=57.98 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=81.5
Q ss_pred HHHHHHHhhh---hhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCC-C
Q 028161 94 ECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP-S 169 (212)
Q Consensus 94 e~e~aLNeQI---n~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~-~ 169 (212)
..-..|.+|+ +-|+.+..+|+..++.++ ..+.+...|...+.||+.|++.|-+.|.+.||.+.- .|- .
T Consensus 20 ~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g----~pw~~ 91 (156)
T cd01051 20 RFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG----VPWTA 91 (156)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcCCC
Confidence 3344555554 369999999999999994 358899999999999999999999999999983322 221 1
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICL 206 (212)
Q Consensus 170 ~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~ 206 (212)
.|.. -.+|+...|...++.|+.....+.++++.+++
T Consensus 92 ~yv~-~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~D 127 (156)
T cd01051 92 AYIQ-SSGNLVADLRSNIAAESRARLTYERLYEMTDD 127 (156)
T ss_pred cccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1111 12689999999999999999999999988764
No 23
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0031 Score=53.28 Aligned_cols=107 Identities=22% Similarity=0.198 Sum_probs=85.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee------------
Q 028161 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK------------ 160 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~------------ 160 (212)
..++.+|+..|..|..+...|..++..++++ -+.+.|...+.+|+.|..+|-+.+-+++++..
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 97 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESE 97 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhh
Confidence 4688999999999999999999999999964 58899999999999999999999999988871
Q ss_pred -eccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028161 161 -LHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLY 207 (212)
Q Consensus 161 -l~~I~~P~~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~ 207 (212)
+..+.. ...+.-. .+.+++++.+...|+...+-+..+.+.....
T Consensus 98 ~~~~~~~-~~~~~~~--~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~ 142 (176)
T COG1633 98 ILEYLQP-GKEMEKS--VSYLEAIEAAMEAEKDTIEFYEELLDELVNE 142 (176)
T ss_pred hccccCc-ccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 111111 0001111 4689999999999999999999888765543
No 24
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=97.20 E-value=0.0085 Score=49.70 Aligned_cols=102 Identities=8% Similarity=0.048 Sum_probs=82.3
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--------cc
Q 028161 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------HS 163 (212)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l--------~~ 163 (212)
.+.+.+.||+.+..++.....|..+.-+-. +.....+..+|.++..++++|+..+.+++...||.|.- ..
T Consensus 20 ~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~ 97 (162)
T PRK09448 20 KKATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTP 97 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCC
Confidence 356889999999999998888888766666 56888999999999999999999999999999999842 33
Q ss_pred ccC-CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 164 IMQ-PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLH 201 (212)
Q Consensus 164 I~~-P~~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~ 201 (212)
|+. |... -+..++++..++.-..+...+++.+
T Consensus 98 i~e~~~~~------~~~~~~l~~l~~d~~~~~~~~r~~i 130 (162)
T PRK09448 98 LKSYPLDI------HNVQDHLKALADRYAIVANDVRKAI 130 (162)
T ss_pred CCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 2222 2456888888888888888888777
No 25
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=97.01 E-value=0.0021 Score=50.43 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=72.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCCCc--cc
Q 028161 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH--AE 175 (212)
Q Consensus 98 aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f~~--~e 175 (212)
.+|+.+..|..+...|..++..... +...+.|...|++|++|++-+-+++..+|+.+. .+.....+.. ..
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence 4788999999999999999998873 358999999999999999999999999998875 1100000000 00
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 176 KGDALYAMELALSLEKLTNEKLLSLHS 202 (212)
Q Consensus 176 ~~d~lealE~AL~lEK~vt~~L~~L~~ 202 (212)
..++..+++.+...|+.....+.++.+
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~ 100 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLLE 100 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhhh
Confidence 123456777788889888887777764
No 26
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=96.70 E-value=0.053 Score=45.27 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=81.4
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee-----eeccccCC
Q 028161 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV-----KLHSIMQP 167 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V-----~l~~I~~P 167 (212)
+++.+.|-.....|+.+.|-|..++.... +..=.|.-.|....-.|-+.|++.+.++|-+.||.+ .|.+|..=
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~--Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC 93 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALK--GLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGC 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCC
Confidence 45667777777889999999998887766 233344556666666778999999999999999987 34455431
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 168 PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVI 204 (212)
Q Consensus 168 ~~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA 204 (212)
...+=..+|.|+.+.++.+++-|+-....+.+++++-
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T 130 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLT 130 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 1111123457899999999999999999999887653
No 27
>PF13668 Ferritin_2: Ferritin-like domain
Probab=96.60 E-value=0.045 Score=43.10 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=80.5
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhccC---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCCCc
Q 028161 97 AAINEQINVEYNVSYVYHALYAYFDRD---NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH 173 (212)
Q Consensus 97 ~aLNeQIn~EL~ASy~YLsmAa~Fdrd---~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f~~ 173 (212)
+.||-.+++|+.....|..-..-+..+ ..-=+..-.+|+.-...|+.|...|-+.+. |+++. +.|..+|..
T Consensus 4 ~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~~ 77 (137)
T PF13668_consen 4 DILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFPF 77 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCcccccc
Confidence 578999999999999999877744210 112344678888999999999999988887 76663 566666644
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 174 AEKGDALYAMELALSLEKLTNEKLLSLHSVICL 206 (212)
Q Consensus 174 ~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~ 206 (212)
+.+.+..+.+..++..|......+..+......
T Consensus 78 ~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~ 110 (137)
T PF13668_consen 78 DPFTDDASFLRLAYTLEDVGVSAYKGAAPQIED 110 (137)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556789999999999999999999988776553
No 28
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=96.52 E-value=0.03 Score=47.13 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RG 156 (212)
..++-|-+...-|=.+-..|+.||...++. |++.+|+.|+..+.+|..||..+.+.+-+.+
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345566667778888999999999999965 9999999999999999999999998887655
No 29
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.19 Score=41.86 Aligned_cols=108 Identities=18% Similarity=0.097 Sum_probs=79.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee--------eccc
Q 028161 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSI 164 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~--------l~~I 164 (212)
.++.+.||+++.-=+.....++ .++.+-.+..+--+..+|.++.++-.+|..-+.+++...||.|. +..|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~--~~HWnV~G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTH--NYHWNVKGPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hcccceeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 5677888877754332222222 22222224556667999999999999999999999999999984 2333
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLYH 208 (212)
Q Consensus 165 ~~P~~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~ 208 (212)
+..+.+ .++.++++..++--+.+.+.+++.+.+|++.|
T Consensus 92 ke~~~~------~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~g 129 (156)
T COG0783 92 KEEPGD------YTAREMLKELVEDYEYLIKELRKGIELADEAG 129 (156)
T ss_pred cccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 333322 46889999999999999999999999998765
No 30
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=95.84 E-value=0.062 Score=40.93 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCC--CCC
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP--SEF 171 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~--~~f 171 (212)
+++..||+.|.....+...|-..+.-+++ +.+..+|.+.+.+...|+..|-.+|...||.|.-..-..-. ..|
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~ 75 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAW 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHH
Confidence 46789999999999999999999988872 68899999999999999999999999999998543211100 011
Q ss_pred Ccc----ccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 172 DHA----EKGDALYAMELALSLEKLTNEKLLSLH 201 (212)
Q Consensus 172 ~~~----e~~d~lealE~AL~lEK~vt~~L~~L~ 201 (212)
.+. .-.+-..+++.+..-|+.+.+.+.+..
T Consensus 76 ~~ik~~~~~~d~~aiL~~~~~gE~~~~~~y~~aL 109 (111)
T PF09537_consen 76 MDIKSALGGDDDEAILEECERGEDMALEAYEDAL 109 (111)
T ss_dssp THHHHS-----H----------------------
T ss_pred HHHHHHhcCCCccchhhhhhhhhhhhhhhccccc
Confidence 100 001111277777788887777766543
No 31
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.63 E-value=0.33 Score=50.72 Aligned_cols=108 Identities=11% Similarity=0.027 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCC-
Q 028161 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF- 171 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f- 171 (212)
....+.|.-.|.+|-..--.|..++.-.. -+.+.++|...+++|++|.+.|.+....--... -.+...+...+
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 932 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAAAPSP-TEGFKIERAAIM 932 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-ccccccchhhhh
Confidence 56788999999999999999999998765 467999999999999999999988764210000 00000000000
Q ss_pred Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 172 DH--AEKGDALYAMELALSLEKLTNEKLLSLHSVICL 206 (212)
Q Consensus 172 ~~--~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~ 206 (212)
.. ..+.++.++++.|+..|+...+-|.++.+.+.+
T Consensus 933 ~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d 969 (1006)
T PRK12775 933 AGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAETPD 969 (1006)
T ss_pred hhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 00 112467899999999999999999988877654
No 32
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=94.52 E-value=0.3 Score=39.47 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=75.2
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccC---------
Q 028161 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ--------- 166 (212)
Q Consensus 96 e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~--------- 166 (212)
+..||+.|...+.+..-|-..+...+ -|.+..+|.+.+.+-..|+..|-.++...||.|.-..--+
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57899999999999999999888665 4689999999999999999999999999999886321111
Q ss_pred CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHS 202 (212)
Q Consensus 167 P~~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~ 202 (212)
...-|.. ++-..+++.+..-|+.+.+.|.+..+
T Consensus 77 lks~~~~---~~d~aiL~~~e~gEd~~~~~y~~aL~ 109 (139)
T TIGR02284 77 IRATLTP---NDDYVVLEEAERGEDRAKKAYDETLA 109 (139)
T ss_pred HHHHHcC---CChHHHHHHHHHhHHHHHHHHHHHHh
Confidence 0011111 12345677788888888888877664
No 33
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=93.45 E-value=1.8 Score=34.64 Aligned_cols=100 Identities=20% Similarity=0.132 Sum_probs=72.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCCC----
Q 028161 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD---- 172 (212)
Q Consensus 97 ~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f~---- 172 (212)
++|.-.+..|..+-..|..++-.|. .-+-|...+..|.+|...+...+.+.|..... .+.+...|.
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~--~~~~~~~f~~~~~ 72 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPV--DPFSGGVFTNPQY 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CccccccccchhH
Confidence 5677889999999999999998773 34567778999999999999888877744311 111111111
Q ss_pred ----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 173 ----HAEKGDALYAMELALSLEKLTNEKLLSLHSVICL 206 (212)
Q Consensus 173 ----~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~ 206 (212)
.....+..++++.+...|+....-|.++..-+.+
T Consensus 73 ~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d 110 (135)
T cd01048 73 NQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERTQN 110 (135)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0112467899999999999999998888776654
No 34
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=91.95 E-value=0.56 Score=39.40 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=69.2
Q ss_pred hhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-ccCCCCCCCc---cccCCH
Q 028161 104 NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-IMQPPSEFDH---AEKGDA 179 (212)
Q Consensus 104 n~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~-I~~P~~~f~~---~e~~d~ 179 (212)
.-|+.|..+|....+.+. .+.+..++++..++|.+|-..+-+.+..+|++|.+-. +=. ...|-- ......
T Consensus 10 AGE~gA~~IY~gQ~~~~~-----~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~-~~gf~lG~~tal~G~ 83 (165)
T cd01042 10 AGEVGAVRIYRGQLAVAR-----DPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWY-VAGFALGALTALLGK 83 (165)
T ss_pred cchHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH-HHHHHHHHHHHhhCh
Confidence 358999999999998887 2899999999999999999999999999999997642 110 000000 000112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 180 LYAMELALSLEKLTNEKLLSLHSV 203 (212)
Q Consensus 180 lealE~AL~lEK~vt~~L~~L~~l 203 (212)
.-+|-...+.|..|.+.|++-.+.
T Consensus 84 ~~a~~~~~avE~~V~~Hy~~ql~~ 107 (165)
T cd01042 84 KAAMACTAAVETVVEEHYNDQLRE 107 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999888876554
No 35
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=84.98 E-value=3.1 Score=35.14 Aligned_cols=97 Identities=20% Similarity=0.105 Sum_probs=68.5
Q ss_pred hhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec-cccCCC---CCCCccccCC
Q 028161 103 INVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH-SIMQPP---SEFDHAEKGD 178 (212)
Q Consensus 103 In~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~-~I~~P~---~~f~~~e~~d 178 (212)
-.-|+.|..+|..-...+.. .+.+..++++..++|.+|-..+-+.+..+|.+|.+- ++=... .++-.. ...
T Consensus 11 HAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~ta-l~G 85 (172)
T PF03232_consen 11 HAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGALTA-LLG 85 (172)
T ss_pred HHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHHHH-hhc
Confidence 35689999999999988873 678999999999999999999999999999998653 111100 000000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 179 ALYAMELALSLEKLTNEKLLSLHSVI 204 (212)
Q Consensus 179 ~lealE~AL~lEK~vt~~L~~L~~lA 204 (212)
..-+|-..-+.|..+.+.|++-.+.-
T Consensus 86 ~~~~~a~t~avE~~V~~Hy~~Ql~~L 111 (172)
T PF03232_consen 86 DKAAMACTAAVETVVEEHYNDQLREL 111 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23466677788888888877765543
No 36
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=83.93 E-value=4.7 Score=35.33 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec
Q 028161 99 INEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (212)
Q Consensus 99 LNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~ 162 (212)
|+..|.+|+...-.||..+.--+. -.-.....-.+.-+.|||-|.....+-+|-.||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~~--~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIKP--GTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS---TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 566789999999999865555542 12233888899999999999999999999999999887
No 37
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=83.82 E-value=11 Score=29.59 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhhhhhh-HHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 93 DECEAAINEQINVEYN-VSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~-ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~ 154 (212)
..+...|...+..|.. +.-.|..++..+.. .+-...+.||.....+|..|+..|=+.+..
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~--e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEE--EGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677888889999986 77999999999995 589999999999999999999988766543
No 38
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=83.67 E-value=5 Score=31.40 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n 153 (212)
..+...|...+..|...+-.|-.++..+.. .|....+.||+.....|..|++.+-+.+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~~--egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAKA--EGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888999999999999999999995 58999999999999999999998877654
No 39
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=83.65 E-value=7.9 Score=33.15 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=55.7
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCC
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP 167 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P 167 (212)
+....|-++.+-|.-|+-.=++|=.-|. ..+++..-+-..+.||+.|-++.++.+.+||. .+..+.++
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~ 85 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKD 85 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCC
Confidence 5667888999999999998777655554 35789999999999999999999999999995 45555554
No 40
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=79.30 E-value=12 Score=27.98 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=46.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFME 150 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLik 150 (212)
....++.-.+..|-.+.-.|..++..+. -+...++|...+.+|..|...|-+
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~l~~~E~~H~~~l~~ 135 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAP-----DPEIRKLFEELAKEEKEHEDLLEK 135 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999998876 467889999999999999998865
No 41
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=77.44 E-value=10 Score=28.33 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=47.2
Q ss_pred ccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 028161 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (212)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY 151 (212)
.......+|...|..|-.+.-.|..++..+.+ +.....|+....+|+.|...|-+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d-----~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAEKAED-----PEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566789999999999999999999987763 368899999999999999988653
No 42
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=75.24 E-value=17 Score=28.83 Aligned_cols=58 Identities=10% Similarity=-0.018 Sum_probs=50.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n 153 (212)
.+...|..-++.|..+...|..+...+.+ .+-+..+.||..--+++.+|.+.+-+++.
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999985 37788999999888888889888877776
No 43
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=75.03 E-value=12 Score=29.95 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=46.5
Q ss_pred cHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 028161 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (212)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY 151 (212)
.......|...+..|-.+...|..++...+ =+..-+.|...+.+|.+|...|-+.
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677999999999999999999999754 2678889999999999999887653
No 44
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=71.25 E-value=53 Score=26.48 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=65.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCCCCCCccccC
Q 028161 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKG 177 (212)
Q Consensus 98 aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~~~f~~~e~~ 177 (212)
+|+..+..|+.+.|.|=..+.+.+-+ ...--.....+.|...+.+...+..+|+.+......-... ....
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~~------~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~lP----~~v~ 70 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDGD------RRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQLP----FPVT 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS---S----S---
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC----CCCC
Confidence 57888999999999999999988732 3444556666788889999999999998875432221110 0225
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 178 DALYAMELALSLEKLTNEKLLSLH 201 (212)
Q Consensus 178 d~lealE~AL~lEK~vt~~L~~L~ 201 (212)
|...+...+..+|..+...+..+.
T Consensus 71 d~~sa~~la~~lE~~~a~aw~~lv 94 (131)
T PF14530_consen 71 DPASAAALAAALEDDCAAAWRALV 94 (131)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999887
No 45
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=70.08 E-value=37 Score=26.60 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=48.8
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~ 152 (212)
.+...|...+..|-.+.-.|..+...++. .+-+..+.+|..-..+|.+|...|=+++
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~~A~~--~~D~~t~~~l~~~~~~e~~h~~~l~~~l 137 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIALCEE--VGDYVSRDLLEEILEDEEEHIDWLETQL 137 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999988874 4678899999999999999998765543
No 46
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=68.43 E-value=33 Score=24.20 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY 151 (212)
.....|-..+..|-.+...|..+...+. -+...++|.....+|..|...+.++
T Consensus 77 ~~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 77 DPAEALRAALEVEARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777778999999999999998876 3568999999999999999988765
No 47
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=68.14 E-value=27 Score=30.39 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=45.7
Q ss_pred hhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeec
Q 028161 104 NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (212)
Q Consensus 104 n~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~ 162 (212)
.-|+.|-++|.--+++.... -+.. -.++..++|-.|--.+-+++.+|+.+|.+-
T Consensus 51 aGE~~A~~iY~GQ~~~~r~~---~~R~--~l~em~d~E~~HL~~f~~~l~e~~vRPsll 104 (204)
T COG2941 51 AGELGAQAIYQGQAAVARSP---EPRI--QLKEMADEEIDHLAWFEQRLLELGVRPSLL 104 (204)
T ss_pred hhHHHHHHHHhhHHHHHcCc---chHH--HHHHHHHHHHHHHHHHHHHHHHccCCccHH
Confidence 35999999999988888743 2233 899999999999999999999999999753
No 48
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=66.58 E-value=33 Score=28.92 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=54.5
Q ss_pred hccccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028161 88 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (212)
Q Consensus 88 Rq~~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~R 155 (212)
.+..+.....+|-..|-.|-.++..|.-+...-.+ ++..+.|+..++.|+.|+..+..+++..
T Consensus 107 ~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~-----~~~~~~~~~~a~~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 107 EMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVN-----EEAKKLFKTIADDEKGHASGLLSLYNRL 169 (176)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999988774 3678899999999999999999887764
No 49
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=65.42 E-value=1e+02 Score=27.56 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=55.3
Q ss_pred ccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCC
Q 028161 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (212)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~ 168 (212)
-.+.-...|....|.|++|...++-...=|.+ +... .|-.=|-+.+.||-.|...+.+++...|. .+++++...
T Consensus 63 ~~~~r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP~-~f~~D~~~va~dEarHf~ll~~rL~~lG~--~yGd~P~h~ 136 (253)
T PF04305_consen 63 TPEGRAALLHAIAHIELNAIDLALDAIYRFHP-NLPR-EFYDDWLRVADDEARHFRLLRERLEELGS--DYGDLPAHD 136 (253)
T ss_pred ChhhHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcchhh
Confidence 33445677888889999999999988888822 2222 34444556788999999999999999994 666666654
No 50
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=61.69 E-value=50 Score=22.73 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=46.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 028161 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (212)
Q Consensus 98 aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~ 158 (212)
.+++.++.+=.++..|.....=+. =|.+=..|.....++.++...+.+|++++|=-
T Consensus 5 i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY 60 (64)
T PF07875_consen 5 IANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGWY 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 466777788888888887777665 46788999999999999999999999999843
No 51
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=59.53 E-value=1.5e+02 Score=27.63 Aligned_cols=115 Identities=16% Similarity=0.195 Sum_probs=70.1
Q ss_pred cccHHHHHHHHh-hhhhhhhHHHHHHHH-HHhhcc---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccc
Q 028161 90 KYEDECEAAINE-QINVEYNVSYVYHAL-YAYFDR---DNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI 164 (212)
Q Consensus 90 ~~s~e~e~aLNe-QIn~EL~ASy~YLsm-Aa~Fdr---d~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I 164 (212)
.++++...+|-- .|.-|---+ |+.+ +.+|.. ++....+.++|...=.-||-.|+.-|-+|+.-.| .|....+
T Consensus 57 ~Lpd~~~~alv~~llTEd~LPs--Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~l 133 (330)
T PF03405_consen 57 TLPDDARVALVGNLLTEDNLPS--YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVAL 133 (330)
T ss_dssp TS-HHHHHHHHHHHHHHHTHHH--HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCCC
T ss_pred cCCHHHHHHHHHHHHhhhhhhH--HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHHH
Confidence 366766555544 444443334 4433 344442 1112456899999999999999999999997644 5655555
Q ss_pred cCCC-----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028161 165 MQPP-----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVICLY 207 (212)
Q Consensus 165 ~~P~-----~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~ 207 (212)
+.-. .+|+...-.++...|--+.-.|+-..-...++-++|.+.
T Consensus 134 E~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~ 181 (330)
T PF03405_consen 134 ERTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQA 181 (330)
T ss_dssp CHCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5322 133322213567788888889998888888888888543
No 52
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=59.40 E-value=1.4e+02 Score=27.29 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=75.5
Q ss_pred ccHHHHHHHHhhhhhhhhHHHHHHH-HHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccC---
Q 028161 91 YEDECEAAINEQINVEYNVSYVYHA-LYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ--- 166 (212)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YLs-mAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~--- 166 (212)
+++....+|---.-.| ...=.|+. +..+|..++..-+++++|...=..||-.|+.-|-+|+..- |++....+..
T Consensus 56 L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~~~ 133 (297)
T cd01050 56 LPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERTRQ 133 (297)
T ss_pred CCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 6777766666555556 33444553 4455543322447899999999999999999999999885 5565554442
Q ss_pred --CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 167 --PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVI 204 (212)
Q Consensus 167 --P~~~f~~~e~~d~lealE~AL~lEK~vt~~L~~L~~lA 204 (212)
...+|+...-.++...|-...-.|+-..-.+.++.++|
T Consensus 134 ~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a 173 (297)
T cd01050 134 YLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLA 173 (297)
T ss_pred HHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11233322223566788888888998888888888877
No 53
>PRK10635 bacterioferritin; Provisional
Probab=56.20 E-value=60 Score=26.72 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=49.4
Q ss_pred ccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152 (212)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~ 152 (212)
..+.+.+.|..-+..|..+.-.|--+..+|.+ .+=+.-..+|..--.+|-+|...|=..+
T Consensus 79 ~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l 138 (158)
T PRK10635 79 IGEDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETEL 138 (158)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999994 3566677788888888889988775543
No 54
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=53.31 E-value=57 Score=29.77 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=52.0
Q ss_pred cHHHHHHHHhhh---hhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 028161 92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL 161 (212)
Q Consensus 92 s~e~e~aLNeQI---n~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l 161 (212)
++...++|.+|+ .-|+.+..+|+.-++-|. + +++-..+..-+-||..|-|.+-.-|+........
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~ 85 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINLLNKGATG 85 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 445667777777 469999999999998777 2 6788889999999999999998887776554444
No 55
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=51.19 E-value=97 Score=26.99 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 028161 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (212)
Q Consensus 126 gL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V 159 (212)
....|+.||++.+.-|.+||..|.+....-.+..
T Consensus 20 ~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~ 53 (234)
T cd07652 20 SAKEFATFLKKRAAIEEEHARGLKKLARTTLDTY 53 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567999999999999999999999766554433
No 56
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=47.99 E-value=1.1e+02 Score=22.73 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~ 154 (212)
.+...|...+..|-.....|..+...++. .+=+....|+...-.++-+|...|-+++..
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~a~~--~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~ 138 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKLAEK--EGDPETADFLDEFLEEEEKHIWMLQAHLTN 138 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999984 356889999988888898898888777754
No 57
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=47.91 E-value=62 Score=34.25 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=48.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028161 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (212)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~R 155 (212)
..++|.-.|..|-.+...|.-++..-++. ....++|...++||++|-..|-+.+...
T Consensus 942 ~~~al~lAm~~Ekdai~fY~~la~~~~d~----e~~k~l~~~LA~EEk~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 942 PGNLFRIAIEFERRAVKFFKERVAETPDG----SVERQLYKELAAEEREHVALLTTEFERW 998 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999987732 1246899999999999999998877653
No 58
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=47.73 E-value=69 Score=25.95 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 028161 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK 160 (212)
Q Consensus 126 gL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~ 160 (212)
-+..++.||++.+.-|.++|.+|-+.-..-.+.+.
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~ 49 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPE 49 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 46679999999999999999999998877666543
No 59
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=46.32 E-value=20 Score=27.02 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhcCcCC
Q 028161 192 LTNEKLLSLHSVICLYHLSF 211 (212)
Q Consensus 192 ~vt~~L~~L~~lA~~~~~~~ 211 (212)
.|.++|..|+++|.++|++|
T Consensus 49 ~V~~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSF 68 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 57788888999999999887
No 60
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=45.87 E-value=38 Score=28.76 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RG 156 (212)
--..||+.-.++=.+.-.+..|++.+. ..|++....|+..+..-|.+|-+.|++||...+
T Consensus 76 ~A~~ld~~AAl~SaSWG~fQIMGfn~~--~~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 76 RARALDEEAALESASWGLFQIMGFNWK--ALGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHHhhCHHHHHHHhhhhHHHHHHHHHH--HcCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 345677777888888889999999999 569999999999999999999999999998854
No 61
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.29 E-value=80 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=28.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 028161 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (212)
Q Consensus 126 gL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V 159 (212)
-+..|+.||++.+.-|.++|..|.+...+-.+..
T Consensus 20 ~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~ 53 (261)
T cd07648 20 AVKELADFLRERATIEETYSKALNKLAKQASNSS 53 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567999999999999999999999887765544
No 62
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.93 E-value=68 Score=27.76 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=26.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 126 gL~GfAkfFr~qS~EEreHAekLikY~n~RG 156 (212)
-...|+.||++.+.-|.++|.+|-+.-..-+
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLak~~~ 50 (239)
T cd07647 20 MCKELEDFLKQRAKAEEDYGKALLKLSKSAG 50 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4667999999999999999999999876643
No 63
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=41.26 E-value=1.8e+02 Score=23.15 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n 153 (212)
..+.+.|...+..|-.++..|.-+...+. +.+=++...+|..-..+|-+|+..|=.++.
T Consensus 81 ~~~~e~l~~~l~~E~~~~~~~~e~i~~A~--~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 81 ETVREMLEADLALELDVLNRLKEAIAYAE--EVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999988887 346788999999999999999988877654
No 64
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=39.70 E-value=1.4e+02 Score=21.19 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 127 LRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 127 L~GfAkfFr~qS~EEreHAekLikY~n~ 154 (212)
+.-+..||++.+.-|.++|.+|-+-..+
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5569999999999999999999988765
No 65
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.49 E-value=96 Score=27.29 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 028161 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (212)
Q Consensus 127 L~GfAkfFr~qS~EEreHAekLikY~n~RGG 157 (212)
-.-|+.||++.|.-|.++|..|.+.-..-++
T Consensus 21 ~kel~~flkeRa~IEe~Yak~L~klak~~~~ 51 (261)
T cd07674 21 TKELADFVRERAAIEETYSKSMSKLSKMASN 51 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4568999999999999999999998854443
No 66
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=37.46 E-value=73 Score=22.46 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=25.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 126 gL~GfAkfFr~qS~EEreHAekLikY~n~RG 156 (212)
-+..+..||++.+.-|.++|..|-+.-..-.
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~ 54 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKFK 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567999999999999999999988655543
No 67
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=36.19 E-value=1.1e+02 Score=28.02 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=73.2
Q ss_pred cHHHHHHHHhhh---hhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc-----
Q 028161 92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS----- 163 (212)
Q Consensus 92 s~e~e~aLNeQI---n~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~----- 163 (212)
++..-..|.+|+ .-|+.++.+|+..+.-|... . .+...+..-+-||..|.|.+-.-|++.-..+....
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~--~--~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~ 93 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGP--E--KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAA 93 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SST--T--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhc
Confidence 344556666666 57999999999999999843 1 13588999999999999998776655433221110
Q ss_pred ------------------ccC-----C----CCCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 028161 164 ------------------IMQ-----P----PSEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVICLYHL 209 (212)
Q Consensus 164 ------------------I~~-----P----~~~f~~---~e~~d~lealE~AL~lEK~vt~~L~~L~~lA~~~~~ 209 (212)
|.. | ...|+- ...||+.--|...+..|..-.-.+.+|++.+++-++
T Consensus 94 ~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mTdDpgv 169 (283)
T PF05067_consen 94 PGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMTDDPGV 169 (283)
T ss_dssp GGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHH
T ss_pred ccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 000 0 112321 134789999999999999999999999888776543
No 68
>PRK13456 DNA protection protein DPS; Provisional
Probab=35.99 E-value=2.9e+02 Score=23.85 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n 153 (212)
++.+.|.+.|..|-.|.-.|.-+--++.. .+--...-... --.+|.+|++.|.+++.
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~~--kDp~T~~l~~~-IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTAG--KDPRTYDLALA-ILQEEIEHEAWFSELLG 163 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999983 34443333333 45567799999999985
No 69
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=32.78 E-value=1.8e+02 Score=22.37 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=36.8
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 96 e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n 153 (212)
..++.-.+..|-.+...|.-++.. -..+.....+|+.|...|.+.+.
T Consensus 78 ~~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 78 TFVLKLLERGEERAIEKYDRLLEE-----------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 356677778999999998887665 23567889999999999987763
No 70
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=32.73 E-value=2.3e+02 Score=23.23 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=48.2
Q ss_pred ccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 028161 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (212)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~R 155 (212)
.+.++.+.|...|..|-.|.-+|--+...-+ | |+.-+-+..-..+|..|.+.|-+.+.+.
T Consensus 96 ~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 96 SSGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888999999999999999999999887 3 4455555556677999999998887654
No 71
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=31.87 E-value=1.7e+02 Score=22.65 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=57.8
Q ss_pred hccccHHHHHHHHhhhhhhhhHHHHHHHHHHh-hc---cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecc
Q 028161 88 RQKYEDECEAAINEQINVEYNVSYVYHALYAY-FD---RDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS 163 (212)
Q Consensus 88 Rq~~s~e~e~aLNeQIn~EL~ASy~YLsmAa~-Fd---rd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~ 163 (212)
...........||.+++.|....|.=..-..| |+ ..|+.+.-|++||.-.-.-..---+.|-.|+..+|+.-....
T Consensus 24 ~~~~~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~~~s~~dv~l~Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~~~ 103 (125)
T PF06744_consen 24 WKLVLQGARSYLNKAWQAEVYPFCRQAIAGRYPFDPDSSRDVSLADFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRWRP 103 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCcceeCC
Confidence 33455677888899988886655542222222 22 457999999999999988888888889999999998877766
Q ss_pred ccC
Q 028161 164 IMQ 166 (212)
Q Consensus 164 I~~ 166 (212)
...
T Consensus 104 ~~~ 106 (125)
T PF06744_consen 104 GDG 106 (125)
T ss_pred CCC
Confidence 554
No 72
>PRK10304 ferritin; Provisional
Probab=31.76 E-value=2.9e+02 Score=22.73 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhccC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 028161 94 ECEAAINEQINVEYNVSYVYHALYAYFDRD-NIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (212)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd-~vgL~GfAkfFr~qS~EEreHAekLikY~n~RG 156 (212)
.+.+.+...+..|..++-.|..+...+... |-.-..|=.||.+.-.||-.|+..+++.+-.-|
T Consensus 82 s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 82 SLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478899999999999999999998888743 223334445666555568889999998877655
No 73
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.48 E-value=1.2e+02 Score=20.53 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=24.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028161 126 ALRGLAKFFKESSEEEREHAEKFMEYQN 153 (212)
Q Consensus 126 gL~GfAkfFr~qS~EEreHAekLikY~n 153 (212)
-+||.|+.+..+++.|.+|-.++-+-.+
T Consensus 12 i~Pg~aerI~~mae~eq~hR~~~e~~~l 39 (50)
T PF10097_consen 12 ILPGAAERIFAMAEKEQEHRHELEKKAL 39 (50)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998855443
No 74
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=28.35 E-value=3e+02 Score=24.72 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHH-HHhhccCccc--hh------------------------------------hHHHH
Q 028161 93 DECEAAINEQINVEYNVSYVYHAL-YAYFDRDNIA--LR------------------------------------GLAKF 133 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YLsm-Aa~Fdrd~vg--L~------------------------------------GfAkf 133 (212)
.+....|-++.|-|.-|+..=++| ..|....+.+ |- .+..-
T Consensus 26 ~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~ 105 (240)
T PF06175_consen 26 ANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDK 105 (240)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 445678889999999999887766 5554221111 21 22233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCC
Q 028161 134 FKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP 167 (212)
Q Consensus 134 Fr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P 167 (212)
+-..+.||+.|-++.++.+.+||.. ++.+.++
T Consensus 106 Ms~LarEEL~HFeqVl~im~~RGi~--l~~~~~d 137 (240)
T PF06175_consen 106 MSRLAREELHHFEQVLEIMKKRGIP--LGPDRKD 137 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCcC
Confidence 4456899999999999999999954 4555554
No 75
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=27.87 E-value=3.2e+02 Score=21.99 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCC
Q 028161 129 GLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP 167 (212)
Q Consensus 129 GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P 167 (212)
-+..+|.+...++.+-.+++.+|+..+|=-..-+.++.|
T Consensus 125 Dl~~~f~~~~~~~~~~~~~~~~l~~~KGwl~~pP~~~~~ 163 (166)
T PF11553_consen 125 DLRAFFMKFLMEALELYDKIVKLMKEKGWLERPPYIPDP 163 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT------B----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCC
Confidence 489999999999999999999999999977665555544
No 76
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.75 E-value=1.9e+02 Score=25.79 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 028161 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (212)
Q Consensus 127 L~GfAkfFr~qS~EEreHAekLikY~n~RGG~V 159 (212)
...|+.||++.|.-|.++|..|.+.-..-++.+
T Consensus 28 ~kel~~f~keRa~iEe~Yak~L~kLak~~~~~~ 60 (269)
T cd07673 28 TKELSDFIRERATIEEAYSRSMTKLAKSASNYS 60 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 456899999999999999999999887665443
No 77
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=26.48 E-value=91 Score=26.79 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=28.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 028161 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (212)
Q Consensus 126 gL~GfAkfFr~qS~EEreHAekLikY~n~RGG~ 158 (212)
-+..+..||++.+.-|.++|.+|-+.-..-.+.
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~~ 52 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLGG 52 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 467899999999999999999999987766543
No 78
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=25.90 E-value=4.5e+02 Score=24.81 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCeeeeccccCCCCCCCccccCCHHHHHHHHHHHHH
Q 028161 113 YHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL-RGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEK 191 (212)
Q Consensus 113 YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~-RGG~V~l~~I~~P~~~f~~~e~~d~lealE~AL~lEK 191 (212)
-+++-.||.+.+ -++|++.-.+--+-+|.-|..-...-++. +...+ .+..+. ....+.++++.|+++|+
T Consensus 255 ~Fa~~~~l~~~g-~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p---~~~~~~------~~~~v~~~~~eave~E~ 324 (410)
T PRK12759 255 SFAMLLNFQRFG-KMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENP---YIVDNE------FKKEIYLMASKAVELED 324 (410)
T ss_pred HHHHHHHHHhcC-CCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh---hhcChH------HHHHHHHHHHHHHHHHH
Confidence 344455676654 59999999999999999999866544332 22222 121111 11347899999999999
Q ss_pred HHHHHHH
Q 028161 192 LTNEKLL 198 (212)
Q Consensus 192 ~vt~~L~ 198 (212)
.-...+.
T Consensus 325 ~~~~~~~ 331 (410)
T PRK12759 325 RFIELAY 331 (410)
T ss_pred HHHHHHc
Confidence 9777554
No 79
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.49 E-value=4.9e+02 Score=23.60 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=55.4
Q ss_pred ccHHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeccccCCC
Q 028161 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (212)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~~P~ 168 (212)
-..--.+.|.-..+.|+||.+.=|-.+.-|. ++.+.=+-.|++ -+.||-.|-.-+-+++...|- ..++.++..
T Consensus 72 t~~g~aallHAiAHIEfNAInLaLDa~~RF~--~~p~~F~~dWm~-VA~EE~~HF~Ll~~~L~~LG~--~YGDfpaHd 144 (268)
T COG2833 72 TTHGRAALLHAIAHIEFNAINLALDAVYRFA--PLPLQFYDDWMR-VADEEAKHFRLLRERLKSLGY--DYGDFPAHD 144 (268)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhc--CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC--CcCCCcccc
Confidence 4445577888888999999999998888888 566654455544 578999999999999999994 445555543
No 80
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=23.25 E-value=4.1e+02 Score=21.57 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecccc-------
Q 028161 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM------- 165 (212)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V~l~~I~------- 165 (212)
+-....|.+....|-+..-.+-.|+.-.. . |.+..-|..+.++-++|.++|=+-+...|+.|.-..-+
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~----~-~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~ 78 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAAS----S-PELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-S----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHH
Confidence 44567888888999999999888887766 2 88999999999999999999999999999998533200
Q ss_pred ---CCCCC-CCccccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCc
Q 028161 166 ---QPPSE-FDHAEKGDALYAM--ELALSLEKLTNEKLLSLHSVICLYHL 209 (212)
Q Consensus 166 ---~P~~~-f~~~e~~d~leal--E~AL~lEK~vt~~L~~L~~lA~~~~~ 209 (212)
.-... ..+ +.+.++. ..+...|..-...|..|..+|...|.
T Consensus 79 e~~~~~~~~~~d---~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG~ 125 (159)
T PF05974_consen 79 EAQELIEEFAED---PAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLGD 125 (159)
T ss_dssp HHHHHHHT-S-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHhcccCC---chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 00000 111 1233433 56778888888889999999888764
No 81
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=21.80 E-value=4.9e+02 Score=22.76 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028161 127 LRGLAKFFKESSEEEREHAEKFMEYQNL 154 (212)
Q Consensus 127 L~GfAkfFr~qS~EEreHAekLikY~n~ 154 (212)
|..+.+||++.+.-|++.|.+|-+-..+
T Consensus 21 Le~i~~F~reRa~iE~EYA~~L~~L~kq 48 (237)
T cd07657 21 LETMKKYMAKRAKSDREYASTLGSLANQ 48 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5568999999999999999999987654
No 82
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=20.25 E-value=2.1e+02 Score=24.55 Aligned_cols=47 Identities=23% Similarity=0.154 Sum_probs=34.1
Q ss_pred HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 028161 113 YHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (212)
Q Consensus 113 YLsmAa~Fdrd~vgL~GfAkfFr~qS~EEreHAekLikY~n~RGG~V 159 (212)
|-.+..+.+..-.-+..|..||++.+.-|.++|.+|-+....-.+..
T Consensus 7 ~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~ 53 (251)
T cd07653 7 FDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKK 53 (251)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444444443345678999999999999999999999876654433
Done!