BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028162
(212 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2
PE=1 SV=1
Length = 273
Score = 345 bits (884), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 171/199 (85%), Positives = 179/199 (89%), Gaps = 2/199 (1%)
Query: 1 MKLDTSGLESTSPF--FGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTT 58
MKLDTSGLE+T P FGS E+ S+APSF LP +TDFD FQK +K AKGTTT
Sbjct: 1 MKLDTSGLETTMPVIGFGSNSEMLDGFSSAPSFDLPRTTDFDGFQKKAVEMVKPAKGTTT 60
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC
Sbjct: 61 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 120
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178
RLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG
Sbjct: 121 RLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKG 180
Query: 179 TRFSVGSGSPYAYGVLDSG 197
RFSVGSGSPYAYGVLDSG
Sbjct: 181 DRFSVGSGSPYAYGVLDSG 199
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 345 bits (884), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/199 (84%), Positives = 179/199 (89%), Gaps = 2/199 (1%)
Query: 1 MKLDTSGLESTSPF--FGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTT 58
MKLDTSG E++ P FGS ++ ELS+ PSF LP + +FD FQK K LKHAKGTTT
Sbjct: 1 MKLDTSGFETSMPMIGFGSSSDMLDELSSVPSFDLPRTKEFDGFQKKAKDMLKHAKGTTT 60
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC
Sbjct: 61 LAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 120
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178
RLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLKG
Sbjct: 121 RLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKG 180
Query: 179 TRFSVGSGSPYAYGVLDSG 197
RFSVGSGSPYAYGVLDSG
Sbjct: 181 DRFSVGSGSPYAYGVLDSG 199
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 343 bits (879), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 169/197 (85%), Positives = 175/197 (88%)
Query: 1 MKLDTSGLESTSPFFGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLA 60
MKLDTSGLEST+P F D + L PSF LP TDFD FQK+ +K AKGTTTLA
Sbjct: 1 MKLDTSGLESTAPIFRRSDFVFDGLQMTPSFDLPNPTDFDGFQKEAVQMVKPAKGTTTLA 60
Query: 61 FIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL 120
FIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL
Sbjct: 61 FIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL 120
Query: 121 HELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTR 180
HELANKRRISVTGASKLLANILY+YRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG R
Sbjct: 121 HELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMR 180
Query: 181 FSVGSGSPYAYGVLDSG 197
FSVGSGSPYAYGVLD+G
Sbjct: 181 FSVGSGSPYAYGVLDNG 197
>sp|Q32KL2|PSB5_BOVIN Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1
Length = 263
Score = 224 bits (571), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 133/171 (77%), Gaps = 11/171 (6%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F+ GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEILH--GTTTLAFKFRHGVIVAADSRATAGAYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G FSVGSGS YAYGV+D G
Sbjct: 151 GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRG 201
>sp|O55234|PSB5_MOUSE Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3
Length = 264
Score = 224 bits (570), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 133/171 (77%), Gaps = 11/171 (6%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEMLH--GTTTLAFKFLHGVIVAADSRATAGAYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YAYGV+D G
Sbjct: 151 GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRG 201
>sp|P28075|PSB5_RAT Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1
SV=3
Length = 263
Score = 223 bits (568), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 110/171 (64%), Positives = 134/171 (78%), Gaps = 11/171 (6%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F+ GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEMLH--GTTTLAFKFQHGVIVAADSRATAGPYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YA+GV+D G
Sbjct: 151 GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRG 201
>sp|Q5R8S2|PSB5_PONAB Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3
Length = 263
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/171 (63%), Positives = 130/171 (76%), Gaps = 11/171 (6%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAP + +P + ++ GTTTLAF F+ GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPGWGVP-----------EEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G FSVGSGS YAYGV+D G
Sbjct: 151 GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRG 201
>sp|P28074|PSB5_HUMAN Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3
Length = 263
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/171 (63%), Positives = 130/171 (76%), Gaps = 11/171 (6%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAP + +P + ++ GTTTLAF F+ GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPGWGVP-----------EEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G FSVGSGS YAYGV+D G
Sbjct: 151 GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRG 201
>sp|Q54BC8|PSB5_DICDI Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5
PE=1 SV=1
Length = 272
Score = 217 bits (552), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/205 (53%), Positives = 144/205 (70%), Gaps = 10/205 (4%)
Query: 1 MKLDTSGLESTSPFFGSGDELCPELS--AAPSFSLPLSTDFDEFQKDT------KATLKH 52
+ +D +E + P D L ++ P F LP + + +F ++T L+
Sbjct: 2 INIDFDNIEQSQPTLY--DTLASDVKFLNTPHFELPPNANPGDFLRETFDHPSAPKALEF 59
Query: 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHR 112
A GTTTLAF++ G++V+ DS+++ G Y++S+SVKK+IEI P +LGTMAGGAADC FW R
Sbjct: 60 AHGTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWER 119
Query: 113 NLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSE 172
LG +CRL+EL NK ISV ASK+LANI+YSY+G GLS+GTMI GWD+TGP LYYVD++
Sbjct: 120 ELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPQLYYVDND 179
Query: 173 GGRLKGTRFSVGSGSPYAYGVLDSG 197
G RL G RFS GSGS YAYGVLD+G
Sbjct: 180 GTRLHGQRFSCGSGSTYAYGVLDTG 204
>sp|P34065|PSB5_CHICK Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5
PE=2 SV=2
Length = 256
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 119/148 (80%)
Query: 50 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109
L+ GTTTLAF F GV+VA DSRA+ G YI+SQ+V+K+IEINP +LGTMAGGAADC F
Sbjct: 50 LQLLHGTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSF 109
Query: 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYV 169
W R L +CR++EL NK ISV ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYV
Sbjct: 110 WERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYV 169
Query: 170 DSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
DSEG R+ G F+VGSGS YAYGVLD G
Sbjct: 170 DSEGTRIPGEAFAVGSGSSYAYGVLDGG 197
>sp|P28064|PSB8_RAT Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1
SV=3
Length = 276
Score = 207 bits (527), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/176 (57%), Positives = 126/176 (71%), Gaps = 6/176 (3%)
Query: 28 APSFSLPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYI 81
AP +LP EF ++ K ++ A GTTTLAF F+ GV+VA DSRAS G YI
Sbjct: 39 APELALPRGMQPTEFLRSFGDDQERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYI 98
Query: 82 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141
++ V K+IEINPY+LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+N+
Sbjct: 99 ATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 142 LYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
+ YRGMGLS+G+MI GWD+ GPGLYYVD G RL G FS GSG+ YAYGV+DSG
Sbjct: 159 MLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSG 214
>sp|P30655|PSB5_SCHPO Probable proteasome subunit beta type-5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pts1 PE=3 SV=3
Length = 272
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/174 (59%), Positives = 130/174 (74%), Gaps = 1/174 (0%)
Query: 24 ELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISS 83
++ P SL L DE K+ +K GTTTLAF ++ G++V DSRAS G I+S
Sbjct: 31 DVVPVPQSSLYLRNLTDE-TKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIAS 89
Query: 84 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILY 143
Q+VKK+IEINPY+LGT+AGGAADCQFW LG++CRLH+L NK ISV+ ASK+L+NI Y
Sbjct: 90 QTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITY 149
Query: 144 SYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
SY+G GLS+GTM+AG + G LYY+DS+G RLKG FSVGSGS +AYGVLDSG
Sbjct: 150 SYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSG 203
>sp|P28062|PSB8_HUMAN Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3
Length = 276
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 132/199 (66%), Gaps = 10/199 (5%)
Query: 9 ESTSPFFGSGDELCPELSA----APSFSLPLSTDFDEFQK------DTKATLKHAKGTTT 58
ES P GSG P + +P +LP EF + + ++ A GTTT
Sbjct: 16 ESALPVAGSGRRSDPGHYSFSMRSPELALPRGMQPTEFFQSLGGDGERNVQIEMAHGTTT 75
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAF F+ GV+ A DSRAS G YIS+ V K+IEINPY+LGTM+G AADCQ+W R L +C
Sbjct: 76 LAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKEC 135
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178
RL+ L N RISV+ ASKLL+N++ YRGMGLS+G+MI GWD+ GPGLYYVD G RL G
Sbjct: 136 RLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSG 195
Query: 179 TRFSVGSGSPYAYGVLDSG 197
FS GSG+ YAYGV+DSG
Sbjct: 196 NMFSTGSGNTYAYGVMDSG 214
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1
SV=1
Length = 276
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/178 (57%), Positives = 125/178 (70%), Gaps = 10/178 (5%)
Query: 28 APSFSLPLSTDFDEF--------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGG 79
AP ++P EF +K+ + + H GTTTLAF F+ GV+VA DSRA+ G
Sbjct: 39 APELAVPRGMQPTEFFQSLGENGEKNIRKEMVH--GTTTLAFKFQHGVIVAVDSRATAGN 96
Query: 80 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLA 139
YISS V K+IEINP +LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+
Sbjct: 97 YISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLS 156
Query: 140 NILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
N++Y YRGM LS+G+MI GWD+ GPGLYYVD G RL G FS GSGS YAYGV+DSG
Sbjct: 157 NMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSG 214
>sp|P28063|PSB8_MOUSE Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2
Length = 276
Score = 203 bits (516), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 125/178 (70%), Gaps = 6/178 (3%)
Query: 26 SAAPSFSLPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGG 79
+ AP +LP F ++ ++ A GTTTLAF F+ GV+VA DSRA+ G
Sbjct: 37 AQAPELALPRGMQPTAFLRSFGGDQERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGS 96
Query: 80 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLA 139
YISS + K+IEINPY+LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+
Sbjct: 97 YISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLS 156
Query: 140 NILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
N++ YRGMGLS+G+MI GWD+ GPGLYYVD G RL G FS GSG+ YAYGV+DSG
Sbjct: 157 NMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSG 214
>sp|P30656|PSB5_YEAST Proteasome subunit beta type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE2 PE=1 SV=3
Length = 287
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/182 (57%), Positives = 131/182 (71%), Gaps = 8/182 (4%)
Query: 20 ELCPELS----AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRA 75
L P L+ A+P L TD D D K + H GTTTLAF F+ G++VA DSRA
Sbjct: 39 RLAPSLTVPPIASPQQFLRAHTD-DSRNPDCKIKIAH--GTTTLAFRFQGGIIVAVDSRA 95
Query: 76 SMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135
+ G +++SQ+VKK+IEINP++LGTMAGGAADCQFW LG +CRLHEL K RISV AS
Sbjct: 96 TAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 155
Query: 136 KLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVL 194
K+L+N++Y Y+G GLS+GTMI G+ + GP +YYVDS+G RLKG F VGSG +AYGVL
Sbjct: 156 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVL 215
Query: 195 DS 196
DS
Sbjct: 216 DS 217
>sp|Q3T112|PSB8_BOVIN Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2
Length = 276
Score = 201 bits (510), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 126/176 (71%), Gaps = 6/176 (3%)
Query: 28 APSFSLPLSTDFDEFQK------DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYI 81
+P +LP EF + ++K ++ A GTTTLAF F+ GV+VA DSRAS G YI
Sbjct: 39 SPELALPRGMQPTEFFRSLGGNGESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYI 98
Query: 82 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141
++ V K+IEINPY+LGTM+G AADC +W R L +CRL+ L N RISV+ ASKLL+N+
Sbjct: 99 ATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 142 LYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
+ YRGMGLS+G+MI GWD+ GPGLYYVD G RL G FS GSG+ +AYGV+DSG
Sbjct: 159 MCQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSG 214
>sp|A5LHX3|PSB11_HUMAN Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1
Length = 300
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Query: 23 PELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYIS 82
P L A +++P D F + L H GTTTLAF F+ GV+ AAD+R+S G Y++
Sbjct: 19 PHLPRAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVA 76
Query: 83 SQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANIL 142
+ K+I ++ ++LGT +G +ADC W+R L + RL EL + SV A+KLL+ ++
Sbjct: 77 CPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMM 136
Query: 143 YSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
YRG+ L V T + GWD +GP L+YV S+G RL+G FSVGSGSPYAYGVLD G
Sbjct: 137 SQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRG 191
>sp|Q8BG41|PSB11_MOUSE Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1
Length = 302
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 111/174 (63%), Gaps = 2/174 (1%)
Query: 24 ELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISS 83
L A +++P D F + L H GTTTLAF F+ GV+ AAD+R+S G Y++
Sbjct: 20 HLPQAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVAC 77
Query: 84 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILY 143
+ +K+I ++ +LGT +G +ADC W+R L + RL EL + SV G +KLLA ++
Sbjct: 78 PASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMS 137
Query: 144 SYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197
YRG+ L V T + GWD +GP L+YV S+G L+G FSVGSGSPYAYGVLD G
Sbjct: 138 CYRGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRG 191
>sp|Q2FQL8|PSB_METHJ Proteasome subunit beta OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=psmB PE=3 SV=1
Length = 209
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ +F+ GV++A++ RA+MG IS+++ KKI +I P + T AGG D Q R
Sbjct: 9 KGTTTVGIVFETGVVLASEKRATMGYLISNKTAKKIYQIAPRIGLTTAGGVGDAQQLARL 68
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ ++ L+E+ +RISV AS LL+NIL+ R V +I G DETGP L+ VD+ G
Sbjct: 69 MTVEANLYEIRRGKRISVQAASTLLSNILHGNRMFPFYVQLLIGGVDETGPVLFSVDAVG 128
Query: 174 GRLKGTRF-SVGSGSPYAYGVLD 195
G K + GSGSP AYGVL+
Sbjct: 129 GTGKEDGIVATGSGSPMAYGVLE 151
>sp|Q12YV7|PSB_METBU Proteasome subunit beta OS=Methanococcoides burtonii (strain DSM
6242) GN=psmB PE=3 SV=1
Length = 210
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
KH KGTTT+ + +GV++A + RA+MG +I+S++ KKI +I+ + T AG D Q
Sbjct: 5 KHLKGTTTVGIVCTDGVVLATEQRATMGHFIASKTAKKIYQIDDLVGMTTAGSVGDAQQI 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L ++ + I++ G + LL+N+L R L V +I G D+ GP +Y +D
Sbjct: 65 VRIISVESKLFKMRRQESITIKGITTLLSNMLSGQRYYPLMVQLLIGGVDKNGPAIYSLD 124
Query: 171 SEGGRLKGTR-FSVGSGSPYAYGVLD 195
+ GG ++ TR S GSGSP AYGVL+
Sbjct: 125 ALGGNIEETRAVSTGSGSPMAYGVLE 150
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ +FK+G+++A + RA+MG I+S+ KK+ ++ + T AGG D Q R
Sbjct: 8 KGTTTIGIVFKDGIILATEKRATMGSMIASKRAKKVYQVADRIGMTTAGGVGDAQQLARI 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ ++C L+++ R ISV +S LL+N L RG V ++ G D TGP +Y VD+ G
Sbjct: 68 MSVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYVQLLVGGVDATGPSVYSVDAMG 127
Query: 174 GRLKGTRF-SVGSGSPYAYGVLD 195
G + + + GSGSP AYGVL+
Sbjct: 128 GATRESDIVATGSGSPMAYGVLE 150
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGNFIASKTAKKVYQIDDLVAMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ +++ G + L++N L S R + V +I G D+ GPG+Y +D
Sbjct: 65 VRLVNVESQLYKMRRNESMTIKGIATLMSNFLNSNRYYPMMVQLLIGGVDKNGPGIYSLD 124
Query: 171 SEGGRLKGTRFS-VGSGSPYAYGVLD 195
+ GG ++ TR S GSGSP AYGVL+
Sbjct: 125 ALGGSIEETRISATGSGSPMAYGVLE 150
>sp|Q29576|PSB8_PIG Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8
PE=1 SV=1
Length = 104
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 62/79 (78%)
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178
RL+ L N RISV+ ASKL +N++Y YRGMGLS+G+MI GWD+ GPGLYYVD G RL G
Sbjct: 1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSG 60
Query: 179 TRFSVGSGSPYAYGVLDSG 197
FS GSG+ YAYGV+DSG
Sbjct: 61 NMFSTGSGNTYAYGVMDSG 79
>sp|D5EAS6|PSB_METMS Proteasome subunit beta OS=Methanohalophilus mahii (strain ATCC
35705 / DSM 5219 / SLP) GN=psmB PE=3 SV=1
Length = 210
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
KH KGTTT+ + +GV++A + RA+MG +I+S++ KKI +I+ + T AG D Q
Sbjct: 5 KHLKGTTTVGIVCSDGVVLATEKRATMGNFIASKTAKKIYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ + I++ G + LL+NIL R L V ++ G D+ GP ++ +D
Sbjct: 65 VRMISVESKLYKMRRQESITIKGLTTLLSNILGGQRYFPLMVQLLVGGVDKNGPAIFSLD 124
Query: 171 SEGGRLKGTR-FSVGSGSPYAYGVLD 195
+ GG ++ T+ + GSGSP AYGVL+
Sbjct: 125 AMGGNIEETKAVATGSGSPMAYGVLE 150
>sp|A3CUS9|PSB_METMJ Proteasome subunit beta OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmB PE=3 SV=1
Length = 214
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ IF GV++A + RA+MG I+S+ KKI +I P + T AGG D Q R
Sbjct: 10 KGTTTVGLIFDGGVVLATEMRATMGNMIASKRAKKIYQITPRIGLTTAGGVGDAQQLVRI 69
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
L ++C L E+ + +SV AS LL+N L R V ++ G+D+ GP +Y VD+ G
Sbjct: 70 LQVECNLFEMRRGKTMSVGAASTLLSNYLNQNRYYPYYVQLLMGGFDDEGPSVYSVDAMG 129
Query: 174 GRLKGTRF-SVGSGSPYAYGVLD 195
G K + GSGSP+AYGVL+
Sbjct: 130 GATKEEDIVATGSGSPFAYGVLE 152
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ I +GV++A + RA+MG +I+S+ +KI I T+AG D Q
Sbjct: 5 KQYKGTTTIGIICDQGVVLATERRATMGNFIASRDAQKIYRITDNAAMTIAGSVGDGQRL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R L ++ +L EL +S+ S LL+NIL R V +I G D+ GP +Y +D
Sbjct: 65 ARILQVEAKLFELRRHGSMSINALSMLLSNILAEMRYAPYYVQVLIGGLDKAGPKIYSLD 124
Query: 171 SEGGRLKGTRF-SVGSGSPYAYGVLD 195
GGR++ +F S GSGSP AYGVL+
Sbjct: 125 PLGGRIEEEKFVSTGSGSPIAYGVLE 150
>sp|Q9P992|PSB_METTE Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3
SV=1
Length = 210
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ +++ G + L++N L R + V +I G D+ GPG+Y +D
Sbjct: 65 VRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLD 124
Query: 171 SEGGRLKGTRFS-VGSGSPYAYGVLD 195
+ GG ++ TR S GSGSP AYGVL+
Sbjct: 125 AMGGSIEETRISATGSGSPMAYGVLE 150
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ + K+GV++A + RA+MG +I+S+ KKI I + T AG D QF
Sbjct: 8 KVYKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFL 67
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+E+ + + +V + LL+NIL S R V ++ G D+ GP +Y +D
Sbjct: 68 ARLISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFVQLLVGGVDKRGPSIYSID 127
Query: 171 SEGGRLKGTRF-SVGSGSPYAYGVLD 195
GG ++ + GSGSP AYGVL+
Sbjct: 128 LLGGAIEEIDIVATGSGSPTAYGVLE 153
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 103 bits (258), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ +++ G + L++N L + R + V +I G D+ GP +Y +D
Sbjct: 65 VRLVSVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGPAIYSLD 124
Query: 171 SEGGRLKGTRFS-VGSGSPYAYGVLD 195
+ GG ++ TR S GSGSP AYGVL+
Sbjct: 125 AMGGSIEETRISATGSGSPMAYGVLE 150
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + ++ +L+++ +++ G + L++N L + R + V +I G D+ GP +Y +D
Sbjct: 65 VRLVSVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGPAIYSLD 124
Query: 171 SEGGRLKGTRFS-VGSGSPYAYGVLD 195
GG ++ TR S GSGSP AYGVL+
Sbjct: 125 PMGGSIEETRISATGSGSPMAYGVLE 150
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ +F GV++A + RA+MG I+S+ KK+ +I + T+AGG D Q R +
Sbjct: 11 GTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARII 70
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 174
++C L+++ R I+V AS LL+N L R V ++ G D+ GP +Y VD+ GG
Sbjct: 71 TVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYVQLLVGGIDDHGPSVYSVDAMGG 130
Query: 175 RLKGTRF-SVGSGSPYAYGVLD 195
K S GSGSP AYGVL+
Sbjct: 131 ATKEEDIVSTGSGSPMAYGVLE 152
>sp|D3E0A3|PSB_METRM Proteasome subunit beta OS=Methanobrevibacter ruminantium (strain
ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=psmB PE=3
SV=1
Length = 207
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 3/142 (2%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
+GTTT+ K+GV+ A++ RASMG ++ + +KI +I+ ++ T+AG AD Q +
Sbjct: 8 EGTTTVGITCKDGVVFASERRASMGNLVAHKVAEKIFKIDNHIAATIAGSVADAQTLMKV 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ + L+ L N + IS+ A+ + +NIL+S V T+I G D+TG +Y +D+ G
Sbjct: 68 ISAETSLYRLRNGKDISLEAAAAVSSNILHSSPAY---VQTLIGGVDDTGASIYSLDAAG 124
Query: 174 GRLKGTRFSVGSGSPYAYGVLD 195
G +K T S GSGS +AYGVL+
Sbjct: 125 GMIKDTFISTGSGSTFAYGVLE 146
>sp|O27270|PSB_METTH Proteasome subunit beta OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmB PE=3 SV=1
Length = 210
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 84/142 (59%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ K+GV+ A + RASMG I+ ++ KI +I+ ++ T+AG AD Q +
Sbjct: 8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKY 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
L + L+ + N +IS+ A+ L ANIL+S R V T++ G DE G +Y +D G
Sbjct: 68 LKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSG 127
Query: 174 GRLKGTRFSVGSGSPYAYGVLD 195
G + S GSGSP AYGVL+
Sbjct: 128 GMIPDKFVSTGSGSPVAYGVLE 149
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ + K+GV++A + RA+MG +I+S++ KKI +I M T AG D QF
Sbjct: 7 KIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFL 66
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R + I+ L+E+ +R+ +V + L +N+L SYR V +I G D G +Y +D
Sbjct: 67 ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSID 126
Query: 171 SEGGRLKGTRF-SVGSGSPYAYGVLD 195
GG ++ + GSGS AYGVL+
Sbjct: 127 PIGGAIEEKDIVATGSGSLTAYGVLE 152
>sp|D1Z199|PSB_METPS Proteasome subunit beta OS=Methanocella paludicola (strain DSM
17711 / JCM 13418 / NBRC 101707 / SANAE) GN=psmB PE=3
SV=1
Length = 205
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 3/146 (2%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ I G+++A + RA+MG I+S+ +KI ++ + T+AG D Q
Sbjct: 4 KQYKGTTTVGIICNNGLVLATERRATMGNLIASRDAQKIYQLTDNIAMTIAGSVGDGQRL 63
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
R L + +L EL +S+ S LL+N+L+ YR + V ++ G D++GP L+ +D
Sbjct: 64 ARMLQAESKLFELRRHGPMSINALSMLLSNLLWEYRIFYIQV--LVGGVDKSGPKLFSLD 121
Query: 171 SEGGRLKGTRF-SVGSGSPYAYGVLD 195
GGR+ +F S GSGSP AYGVL+
Sbjct: 122 PAGGRITEVKFSSTGSGSPLAYGVLE 147
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RASMG I+ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRA 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSE 172
L + RL+++ + IS + LL+NIL+S R +I G+D T GP L+ +D
Sbjct: 65 LIAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLTDGPKLFSLDPL 124
Query: 173 GGRLKGTRF-SVGSGSPYAYGVLDS 196
GG + F S GSGSP AYGVL++
Sbjct: 125 GGMNEEKTFTSTGSGSPIAYGVLEA 149
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 50 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109
L+ KGTTT+ +F++ V++AAD RA+ G +++ + KKII+I YM T AG AD Q
Sbjct: 10 LRALKGTTTVGIVFRDFVVLAADRRATAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQM 69
Query: 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYV 169
L +E+ NKRR+S+ A++ L+ IL+S + V ++ G+D T P LY +
Sbjct: 70 LAEWLANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKFYPYIVQLLLGGYD-TQPRLYNI 128
Query: 170 DSEGGRLKGTRFSVGSGSPYAYGVLD 195
D G + + GSGSP A GV++
Sbjct: 129 DWFGSVTEEKYVATGSGSPTAIGVIE 154
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + K+GV++A + RA+MG +I+S+ KKI +I + T AG D QF R
Sbjct: 8 KGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYKITDRIAMTTAGSVGDAQFLARL 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ ++ L+ + + +V + L++N+L S R V +I G D+TG +Y +D G
Sbjct: 68 IKVETNLYTIRKEEEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGVDKTGAKIYSIDPIG 127
Query: 174 GRLKGTRF-SVGSGSPYAYGVLDSG 197
G ++ + GSGSP AYGVL+
Sbjct: 128 GAIEEIDIVATGSGSPMAYGVLEDN 152
>sp|A5UM14|PSB_METS3 Proteasome subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmB PE=3 SV=1
Length = 204
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K +GTTT+ K+GV+ A++ RASMG ++ + +KI +IN +++ T+AG D Q
Sbjct: 4 KILEGTTTVGITCKDGVVFASERRASMGNLVAHKVAEKIFKINDHIVTTIAGSVGDAQNL 63
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
+ + + L+++ N +ISV A+ + ANIL R + V T++ G D P LY +D
Sbjct: 64 MKIIEAEVSLYQMRNNDKISVKAAASVTANIL---RSGPMYVQTLLGGMDGDKPSLYSLD 120
Query: 171 SEGGRLKGTRFSVGSGSPYAYGVLD 195
GG ++ T S GSGS AYGVL+
Sbjct: 121 PAGGMIEDTYISTGSGSIVAYGVLE 145
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ +F GV++A + RA+MG I+S+ KK+ I + T+AGG D Q R +
Sbjct: 11 GTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDAQQLVRII 70
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 174
++C L+E+ ++ISV A+ +L+N L R V ++ G D +GP +Y VD+ GG
Sbjct: 71 NVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYVQLLVGGVDTSGPSVYSVDAAGG 130
Query: 175 -RLKGTRFSVGSGSPYAYGVLD 195
L+ S GSGS AYGVL+
Sbjct: 131 ATLEENFVSTGSGSLTAYGVLE 152
>sp|B1L6S7|PSB1_KORCO Proteasome subunit beta 1 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB1 PE=3 SV=1
Length = 206
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 83/144 (57%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ FK GV+VA+D RA+ G +++S+S K ++I Y + T++G AD Q+ N
Sbjct: 4 KGTTTVGVKFKNGVIVASDKRATSGTFVASKSAVKTLKITDYAVATISGLVADGQYLVNN 63
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ L+ L +R +SV G +++LA +L YR L ++ G D G L+ VD G
Sbjct: 64 VRTIADLYSLDTERPLSVRGIARILAFLLRRYRPYFLLAQLIVGGVDREGAHLFNVDPFG 123
Query: 174 GRLKGTRFSVGSGSPYAYGVLDSG 197
+ + GSGSP A V++SG
Sbjct: 124 TLTEEDYLATGSGSPVAISVIESG 147
>sp|A0B5B1|PSB_METTP Proteasome subunit beta OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=psmB PE=3 SV=1
Length = 207
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + GV++A++SRA+MG +I+S++ KKI +I+ + T AG D Q R
Sbjct: 6 KGTTTVGIVCDGGVVLASESRATMGSFIASRTAKKIYQIDDLVGLTTAGVVGDAQALVRM 65
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
+ + RL+ + +++ + LL+NIL + R V ++ G D+ GP ++ +D+ G
Sbjct: 66 IQAEARLYRMQRGEPLTIKAITSLLSNILSARRYFPFLVQLVVGGVDKMGPKIFSLDALG 125
Query: 174 GRLKGTRF-SVGSGSPYAYGVLDS 196
G+++ S GSGSP AYGVL+S
Sbjct: 126 GQIEEHDIVSTGSGSPIAYGVLES 149
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ ++ V++AAD RA+ G +I + V+KI++I+ YM T AG AD Q
Sbjct: 12 KGTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADV 71
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 173
L ++ + +EL +K+R+SV A+ L+N+L+S R V ++ G+D T P LY +D G
Sbjct: 72 LRMEVKNYELFHKKRMSVKAAATFLSNVLHSARFYPYIVQLLVGGFD-TAPRLYSLDWFG 130
Query: 174 GRLKGTRFSVGSGSPYAYGVLDS 196
+ GSGSP A GV+++
Sbjct: 131 TVAEEEFLVTGSGSPMAVGVIEA 153
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ I + V++AAD RA+ G I+S+ VKKI+ ++ Y+ T++G AD Q L
Sbjct: 25 GTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDVL 84
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 174
+ RL+E+ NK + SV + LL+NIL+S + V ++ G+D T P LY +D G
Sbjct: 85 REEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYIVQLIVGGYD-TQPRLYTLDLFGS 143
Query: 175 RLKGTRFSVGSGSPYAYGVLD 195
+ + GSGSP AYGVL+
Sbjct: 144 ITEDKYTATGSGSPIAYGVLE 164
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + +GV++AAD RA MG I+ + VKKI I+ Y+ T AG AD Q
Sbjct: 9 KGTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIVDL 68
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYS----YRGMGLSVGTMIAGWDETGPGLYYV 169
+ + RL+EL + R IS + +++++L+S +R V ++ G+++ P LY +
Sbjct: 69 MRAEARLYELRHNRMISARALANMISHVLHSSLKAFRPY--LVQLIVGGFNDDDPALYNL 126
Query: 170 DSEGGRLKGTRFSVGSGSPYAYGVLDS 196
D G ++ + GSGSP AYGVL++
Sbjct: 127 DPSGSIIEEDYTATGSGSPTAYGVLEA 153
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RASMG ++ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASMGNLVADKEAKKLYKIDDYIALTIAGSVGDAQAIVRL 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSE 172
L + +L+++ + IS + LL+NIL+S R +I G+D G L+ +D
Sbjct: 65 LTAEAKLYKMRTGKNISPLACATLLSNILHSNRYFPFLTQLIIGGYDLLEGAKLFSLDPL 124
Query: 173 GGRLKGTRFS-VGSGSPYAYGVLDSG 197
GG + F+ GSGSP AYGVL++G
Sbjct: 125 GGMNEEKTFTATGSGSPIAYGVLEAG 150
>sp|D3S8M7|PSB_METSF Proteasome subunit beta OS=Methanocaldococcus sp. (strain FS406-22)
GN=psmB PE=3 SV=1
Length = 224
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RAS+G ++ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSE 172
L + +L+++ R I + LL+NIL+S R +I G+D G L+ +D
Sbjct: 65 LTAEAKLYKMRTGRNIPPLACATLLSNILHSSRVFPFLTQIIIGGYDLLEGAKLFSLDPL 124
Query: 173 GGRLKGTRFS-VGSGSPYAYGVLDSG 197
GG + F+ GSGSP AYGVL++G
Sbjct: 125 GGMNEEKTFTATGSGSPIAYGVLEAG 150
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 90.5 bits (223), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RAS+G ++ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSE 172
L + +L+++ R I + LL+NIL+S R +I G+D G L+ +D
Sbjct: 65 LIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPL 124
Query: 173 GGRLKGTRFS-VGSGSPYAYGVLDSG 197
GG + F+ GSGSP AYGVL++G
Sbjct: 125 GGMNEEKTFTATGSGSPIAYGVLEAG 150
>sp|Q2NI68|PSB_METST Proteasome subunit beta OS=Methanosphaera stadtmanae (strain DSM
3091) GN=psmB PE=3 SV=1
Length = 205
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 88/145 (60%), Gaps = 3/145 (2%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
++ +GTTT+ F+ +GV++A ++RA+MG +++++ K+ +I+ + T+AG + Q
Sbjct: 5 ENMEGTTTVGFVCTDGVVLATETRATMGSLVANKNADKLFQIDDKIGATIAGTVSHAQSL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVD 170
L + L++L N++ +S+ + L +NIL + V T++AG D+ G LY +D
Sbjct: 65 MDILKAEISLYKLRNEKDMSIDALAVLTSNIL---KSRPYYVQTILAGVDKDGAKLYTLD 121
Query: 171 SEGGRLKGTRFSVGSGSPYAYGVLD 195
G + T S GSGSPYA+GVL+
Sbjct: 122 PSGSYIPDTFTSTGSGSPYAFGVLE 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,047,099
Number of Sequences: 539616
Number of extensions: 3158731
Number of successful extensions: 7424
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 6912
Number of HSP's gapped (non-prelim): 439
length of query: 212
length of database: 191,569,459
effective HSP length: 112
effective length of query: 100
effective length of database: 131,132,467
effective search space: 13113246700
effective search space used: 13113246700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)