Query 028162
Match_columns 212
No_of_seqs 189 out of 1341
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0175 20S proteasome, regula 100.0 4.5E-49 9.8E-54 328.1 13.8 181 31-211 41-230 (285)
2 COG0638 PRE1 20S proteasome, a 100.0 1.1E-43 2.3E-48 301.5 21.4 173 38-211 13-191 (236)
3 cd03752 proteasome_alpha_type_ 100.0 8.1E-43 1.8E-47 291.5 21.2 180 30-211 4-193 (213)
4 cd03750 proteasome_alpha_type_ 100.0 7.4E-43 1.6E-47 294.4 20.5 172 37-211 10-189 (227)
5 cd03751 proteasome_alpha_type_ 100.0 1.5E-42 3.2E-47 290.1 20.5 178 29-209 4-190 (212)
6 cd03755 proteasome_alpha_type_ 100.0 1.6E-42 3.5E-47 288.5 20.5 172 37-211 10-190 (207)
7 cd03753 proteasome_alpha_type_ 100.0 7.4E-42 1.6E-46 285.6 21.3 178 31-211 3-194 (213)
8 PTZ00246 proteasome subunit al 100.0 7.6E-42 1.7E-46 292.6 21.1 184 26-211 2-195 (253)
9 cd03749 proteasome_alpha_type_ 100.0 7.1E-42 1.5E-46 285.6 20.3 170 37-211 10-189 (211)
10 PTZ00488 Proteasome subunit be 100.0 1.3E-41 2.7E-46 290.5 21.8 186 26-211 3-198 (247)
11 cd03756 proteasome_alpha_arche 100.0 1.1E-41 2.3E-46 284.2 20.4 179 30-211 3-190 (211)
12 TIGR03633 arc_protsome_A prote 100.0 3.3E-41 7.2E-46 283.6 20.5 180 29-211 3-191 (224)
13 cd03761 proteasome_beta_type_5 100.0 4.2E-41 9.1E-46 276.2 20.2 155 56-210 1-158 (188)
14 cd03754 proteasome_alpha_type_ 100.0 4.5E-41 9.9E-46 281.6 19.8 173 37-211 11-196 (215)
15 PRK03996 proteasome subunit al 100.0 7.2E-41 1.6E-45 284.5 20.7 181 28-211 9-198 (241)
16 cd01911 proteasome_alpha prote 100.0 1.4E-40 3.1E-45 276.9 20.0 172 37-211 10-190 (209)
17 cd03759 proteasome_beta_type_3 100.0 6.2E-40 1.4E-44 270.7 19.7 159 53-211 1-164 (195)
18 KOG0176 20S proteasome, regula 100.0 1.2E-40 2.7E-45 268.8 14.7 170 37-209 17-199 (241)
19 cd03758 proteasome_beta_type_2 100.0 2.6E-39 5.7E-44 266.6 19.6 155 56-210 2-162 (193)
20 TIGR03634 arc_protsome_B prote 100.0 3.5E-39 7.6E-44 263.5 20.2 156 55-210 1-159 (185)
21 cd03757 proteasome_beta_type_1 100.0 3.5E-39 7.6E-44 269.5 18.4 158 54-211 7-177 (212)
22 cd03760 proteasome_beta_type_4 100.0 1.2E-38 2.6E-43 263.2 19.5 158 54-211 1-167 (197)
23 cd03764 proteasome_beta_archea 100.0 2.5E-38 5.4E-43 259.2 20.1 155 56-210 1-158 (188)
24 cd03763 proteasome_beta_type_7 100.0 2.9E-38 6.3E-43 259.3 20.0 154 56-210 1-157 (189)
25 cd03762 proteasome_beta_type_6 100.0 1.1E-37 2.5E-42 255.3 19.9 155 56-211 1-159 (188)
26 TIGR03690 20S_bact_beta protea 100.0 2.5E-37 5.4E-42 259.6 19.8 157 54-210 1-166 (219)
27 cd01912 proteasome_beta protea 100.0 6.1E-37 1.3E-41 250.6 19.9 156 56-211 1-160 (189)
28 cd01906 proteasome_protease_Hs 100.0 5.3E-36 1.1E-40 242.8 19.7 156 56-211 1-162 (182)
29 TIGR03691 20S_bact_alpha prote 100.0 8.8E-36 1.9E-40 251.8 19.7 169 32-210 2-184 (228)
30 PF00227 Proteasome: Proteasom 100.0 9.9E-36 2.2E-40 242.8 18.7 158 54-211 3-170 (190)
31 KOG0184 20S proteasome, regula 100.0 4.5E-36 9.8E-41 245.9 16.2 170 29-201 8-183 (254)
32 KOG0181 20S proteasome, regula 100.0 2.4E-36 5.3E-41 243.4 11.0 174 28-205 5-185 (233)
33 KOG0183 20S proteasome, regula 100.0 9.8E-36 2.1E-40 242.9 11.8 178 29-209 4-193 (249)
34 KOG0178 20S proteasome, regula 100.0 5.7E-35 1.2E-39 237.9 16.0 171 37-209 14-194 (249)
35 cd03765 proteasome_beta_bacter 100.0 1.9E-34 4E-39 244.6 19.1 154 56-211 1-177 (236)
36 KOG0174 20S proteasome, regula 100.0 4.1E-34 8.9E-39 230.3 11.6 158 52-211 16-178 (224)
37 KOG0182 20S proteasome, regula 100.0 5.7E-32 1.2E-36 220.5 15.1 171 38-210 19-200 (246)
38 PRK05456 ATP-dependent proteas 100.0 3.9E-31 8.5E-36 214.5 16.8 147 55-211 1-152 (172)
39 KOG0863 20S proteasome, regula 100.0 1.4E-31 2.9E-36 220.7 13.2 159 38-201 16-179 (264)
40 KOG0173 20S proteasome, regula 100.0 1.3E-31 2.9E-36 223.1 13.1 161 48-211 32-195 (271)
41 cd01913 protease_HslV Protease 100.0 6.3E-31 1.4E-35 212.6 16.0 146 56-211 1-151 (171)
42 TIGR03692 ATP_dep_HslV ATP-dep 100.0 2.1E-30 4.5E-35 209.5 15.9 146 56-211 1-151 (171)
43 KOG0179 20S proteasome, regula 100.0 3.7E-30 8E-35 209.5 13.9 153 37-198 20-173 (235)
44 cd01901 Ntn_hydrolase The Ntn 100.0 3E-28 6.5E-33 190.9 19.8 155 56-210 1-160 (164)
45 KOG0177 20S proteasome, regula 100.0 1.2E-28 2.6E-33 197.9 13.8 152 57-208 3-160 (200)
46 KOG0180 20S proteasome, regula 100.0 2.7E-27 5.8E-32 187.8 14.6 156 53-208 6-166 (204)
47 KOG0185 20S proteasome, regula 99.9 2.1E-27 4.6E-32 196.3 12.5 156 54-209 40-205 (256)
48 COG5405 HslV ATP-dependent pro 99.4 4.5E-12 9.7E-17 100.3 9.6 147 54-209 3-153 (178)
49 COG3484 Predicted proteasome-t 98.9 2.1E-08 4.6E-13 82.4 11.2 151 56-208 2-175 (255)
50 PF10584 Proteasome_A_N: Prote 87.8 0.35 7.6E-06 26.3 1.3 13 37-49 10-23 (23)
51 PF09894 DUF2121: Uncharacteri 57.2 8.1 0.00018 32.0 2.1 54 56-140 2-55 (194)
52 COG4079 Uncharacterized protei 43.7 83 0.0018 27.3 6.1 55 56-141 2-56 (293)
53 PF14593 PH_3: PH domain; PDB: 36.6 35 0.00076 25.3 2.6 17 162-178 36-52 (104)
54 KOG3571 Dishevelled 3 and rela 33.2 1.4E+02 0.0031 28.6 6.5 43 128-175 312-355 (626)
55 COG4537 ComGC Competence prote 31.7 77 0.0017 23.6 3.6 28 107-134 49-77 (107)
56 PF12385 Peptidase_C70: Papain 24.9 2.1E+02 0.0046 23.1 5.4 44 132-175 95-148 (166)
57 COG4728 Uncharacterized protei 24.8 57 0.0012 24.4 1.9 36 89-124 10-48 (124)
58 KOG3652 Uncharacterized conser 24.4 1.4E+02 0.003 29.8 4.9 86 85-176 177-262 (1215)
59 PF04539 Sigma70_r3: Sigma-70 23.8 1.2E+02 0.0026 20.3 3.4 28 112-139 4-31 (78)
60 PRK11508 sulfur transfer prote 23.1 1.4E+02 0.0031 22.4 3.8 35 103-141 39-73 (109)
61 KOG0083 GTPase Rab26/Rab37, sm 22.3 97 0.0021 24.6 2.9 38 54-95 8-45 (192)
62 cd01262 PH_PDK1 3-Phosphoinosi 21.6 64 0.0014 23.4 1.6 16 162-177 24-39 (89)
63 PF06018 CodY: CodY GAF-like d 21.4 4.5E+02 0.0099 21.4 7.3 63 124-207 16-78 (177)
64 KOG2449 Methylmalonate semiald 20.8 2.3E+02 0.0049 22.5 4.7 76 104-181 5-86 (157)
No 1
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-49 Score=328.12 Aligned_cols=181 Identities=65% Similarity=1.034 Sum_probs=171.6
Q ss_pred cCCCCCCCcchhhHH------HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCCh
Q 028162 31 FSLPLSTDFDEFQKD------TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (212)
Q Consensus 31 ~~~p~~~~~~~~q~e------a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~ 104 (212)
..+|+..+|..|.-. +...|++.||||++|++|++|||+|+|+|+|.|++|.+++++||++||++++.+++|.+
T Consensus 41 ~~~P~~~~p~~~l~~~~~~~~~~~~i~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgA 120 (285)
T KOG0175|consen 41 LALPPGESPQTFLFAITDDETAGVLIKFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGA 120 (285)
T ss_pred ccCCCCCCchhhhhhccCCCcccceeeecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcc
Confidence 668887776644332 66688899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEc
Q 028162 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVG 184 (212)
Q Consensus 105 aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiG 184 (212)
||||+|.+.+.++|++|+++++++|+|.+++++|+|++|+||++++++++||||||+.||+||+||..|++.+.+.|++|
T Consensus 121 ADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVG 200 (285)
T KOG0175|consen 121 ADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVG 200 (285)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEcCCCCEecCceEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 185 SGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 185 sgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
||+.+|+++||++||+| +|+..|+|.|
T Consensus 201 SGs~yAYGVLDsgYr~dls~eEA~~L~rrA 230 (285)
T KOG0175|consen 201 SGSTYAYGVLDSGYRYDLSDEEAYDLARRA 230 (285)
T ss_pred CCCceeEEeeccCCCCCCCHHHHHHHHHHH
Confidence 99999999999999998 9999999865
No 2
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-43 Score=301.46 Aligned_cols=173 Identities=35% Similarity=0.447 Sum_probs=164.7
Q ss_pred CcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHH
Q 028162 38 DFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGI 116 (212)
Q Consensus 38 ~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~ 116 (212)
+.+++|+| +.++++ .+|+|+|||+++||||||+|+|.++|.++.+++++||++|+|||+|++||+.+|++.++++++.
T Consensus 13 ~g~l~q~e~a~~a~~-~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~ 91 (236)
T COG0638 13 EGRLFQVEYALEAVK-RGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARA 91 (236)
T ss_pred CCchHHHHHHHHHHH-cCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHH
Confidence 56799999 899888 3359999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC--CCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHH
Q 028162 117 KCRLHELANKRRISVTGASKLLANILYSYRG--MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVL 194 (212)
Q Consensus 117 ~~~~~~~~~~~~isv~~la~~ls~~l~~~r~--~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~L 194 (212)
+++.|++.++++|+++.+++++++++|.||+ +||+|+++|||+|+++|+||++||+|++.+++++|+|+|++.|+++|
T Consensus 92 ~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~L 171 (236)
T COG0638 92 EAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFL 171 (236)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcCCcHHHHHHH
Confidence 9999999999999999999999999999999 89999999999999779999999999999999999999999999999
Q ss_pred HccCcCc---hhHHHHHhcc
Q 028162 195 DSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 195 e~~y~~~---~~~~~~~~~~ 211 (212)
|++|+++ +|+++|+..|
T Consensus 172 e~~y~~~m~~eeai~la~~a 191 (236)
T COG0638 172 EKEYREDLSLEEAIELAVKA 191 (236)
T ss_pred HhhccCCCCHHHHHHHHHHH
Confidence 9999997 8888887654
No 3
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-43 Score=291.48 Aligned_cols=180 Identities=19% Similarity=0.232 Sum_probs=165.0
Q ss_pred CcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHH
Q 028162 30 SFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADC 107 (212)
Q Consensus 30 ~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~ 107 (212)
++.+..+ ++.++||+| |.+|++ +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++|+|++||+.+|+
T Consensus 4 d~~~~~fsp~Grl~Qveya~~a~~--~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (213)
T cd03752 4 DSRTTIFSPEGRLYQVEYAMEAIS--HAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDA 81 (213)
T ss_pred CCCCceECCCCEEhHHHhHHHHHh--cCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhH
Confidence 3444332 356699999 999999 999999999999999999999999777777799999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceE
Q 028162 108 QFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFS 182 (212)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~a 182 (212)
+.+.++++.+++.|+++++++|+++.+|+.|+.++|.|++ +||+|++|++|||+ .||+||.+||+|++.+++++|
T Consensus 82 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a 161 (213)
T cd03752 82 NILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATA 161 (213)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEE
Confidence 9999999999999999999999999999999999888743 49999999999995 689999999999999999999
Q ss_pred EcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 183 VGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 183 iGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+|+|+..++++||+.|+|+ +|+++|++++
T Consensus 162 ~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~a 193 (213)
T cd03752 162 IGNNNQAAQSLLKQDYKDDMTLEEALALAVKV 193 (213)
T ss_pred ECCCcHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 9999999999999999998 8888888764
No 4
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-43 Score=294.40 Aligned_cols=172 Identities=21% Similarity=0.282 Sum_probs=162.3
Q ss_pred CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 37 ~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
++.++||+| |.+|++ +|+|+|||+++||||||+|+|.+ ++++.+++.+||++|+++++|++||+.+|++.+.++++
T Consensus 10 p~Grl~QveyA~~av~--~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r 86 (227)
T cd03750 10 PSGKLVQIEYALAAVS--SGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKAR 86 (227)
T ss_pred CCCeEhHHHHHHHHHH--cCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHH
Confidence 467799999 999999 99999999999999999999998 58888899999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----CCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHH
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAY 191 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~r----~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~ 191 (212)
.+++.|+++++++++++.++++|++++|.|+ .+|++|++||+|||++||+||++||+|++.+++++|+|+|+..++
T Consensus 87 ~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~ 166 (227)
T cd03750 87 KIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAK 166 (227)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECCCCHHHH
Confidence 9999999999999999999999999998773 359999999999998899999999999999999999999999999
Q ss_pred HHHHccCcCc---hhHHHHHhcc
Q 028162 192 GVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 192 ~~Le~~y~~~---~~~~~~~~~~ 211 (212)
++||++|+++ +|+.+|++++
T Consensus 167 ~~Le~~~~~~ms~eeai~l~~~~ 189 (227)
T cd03750 167 TFLEKRYNEDLELEDAIHTAILT 189 (227)
T ss_pred HHHHhhccCCCCHHHHHHHHHHH
Confidence 9999999998 7777777653
No 5
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-42 Score=290.10 Aligned_cols=178 Identities=18% Similarity=0.183 Sum_probs=163.1
Q ss_pred CCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhH
Q 028162 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (212)
Q Consensus 29 ~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 106 (212)
+.+.++.+ ++.++||+| |.+|++ +|+|+|||+++||||||+|+|.+. .++..++++||++|++++++++||+.+|
T Consensus 4 yd~~~t~fsp~Grl~Qveya~~a~~--~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 4 YDLSASTFSPDGRVFQVEYANKAVE--NSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred ccCCCceECCCCcchHHHHHHHHHh--cCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHh
Confidence 44555443 356699999 999999 999999999999999999999986 7777789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCceE
Q 028162 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS 182 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~a 182 (212)
++.+.++++.+++.|+++++++++|+.++++|++++|.|++ +||+|++||+|||++||+||++||+|++.+++++|
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a 160 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCA 160 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEE
Confidence 99999999999999999999999999999999999998854 49999999999998899999999999999999999
Q ss_pred EcCChHHHHHHHHccCcCc---hhHHHHHh
Q 028162 183 VGSGSPYAYGVLDSGCVSI---SHVFMLLL 209 (212)
Q Consensus 183 iGsgs~~a~~~Le~~y~~~---~~~~~~~~ 209 (212)
+|+|+..++++||++|+++ +|+.++++
T Consensus 161 ~G~g~~~a~~~Lek~~~~dms~eeai~l~~ 190 (212)
T cd03751 161 IGKGKQAAKTELEKLKFSELTCREAVKEAA 190 (212)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 9999999999999999998 66666554
No 6
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=288.51 Aligned_cols=172 Identities=20% Similarity=0.315 Sum_probs=160.7
Q ss_pred CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 37 ~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
++.++||+| |.+|++ +|+|+|||+++||||||+|+|.+. .++.+++.+||++|++++++++||+.+|++.+.++++
T Consensus 10 p~Gr~~Qveya~~av~--~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r 86 (207)
T cd03755 10 PDGHLFQVEYAQEAVR--KGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRAR 86 (207)
T ss_pred CCCeEeHHHHHHHHHH--cCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHH
Confidence 356799999 999999 999999999999999999999875 6777788999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----CCCceEEEEEEEEcCC-CCeEEEEeCCCceeecCceEEcCChHHH
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYA 190 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~r----~~p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~~~aiGsgs~~a 190 (212)
.+++.|+++++++|+++.++++|++++|.|+ .+||+|++||+|||++ ||+||++||+|++.+++++|+|+|+..+
T Consensus 87 ~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~ 166 (207)
T cd03755 87 LECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTV 166 (207)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHH
Confidence 9999999999999999999999999998774 3499999999999964 8999999999999999999999999999
Q ss_pred HHHHHccCcCc---hhHHHHHhcc
Q 028162 191 YGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 191 ~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++||++|+|+ +|++++++.+
T Consensus 167 ~~~Le~~~~~~ms~eeai~l~~~~ 190 (207)
T cd03755 167 REFLEKNYKEEMTRDDTIKLAIKA 190 (207)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHH
Confidence 99999999998 8888887653
No 7
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-42 Score=285.59 Aligned_cols=178 Identities=24% Similarity=0.312 Sum_probs=164.4
Q ss_pred cCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHH
Q 028162 31 FSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQ 108 (212)
Q Consensus 31 ~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~ 108 (212)
++.+.+ ++.+++|+| |.++++ +|+|+|||+++||||||+|+|.+. .++..++++||++|+++++|++||+.+|++
T Consensus 3 ~~~~~f~p~G~~~Q~eya~~a~~--~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 3 RGVNTFSPEGRLFQVEYAIEAIK--LGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCccCCCCCeEhHHHHHHHHHh--cCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 444442 355699999 999999 999999999999999999999986 677788999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC---------CCceEEEEEEEEcCCCCeEEEEeCCCceeecC
Q 028162 109 FWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG---------MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT 179 (212)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~---------~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~ 179 (212)
.+.+.++.+++.|+++++++++++.++++|++++|.|++ +||+|++||||||++||+||.+||+|++.+++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~ 159 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCD 159 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeeccc
Confidence 999999999999999999999999999999999998743 59999999999999999999999999999999
Q ss_pred ceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 180 RFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 180 ~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
++|+|+|++.++++||++|+++ +|+.+|++++
T Consensus 160 ~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~ 194 (213)
T cd03753 160 AKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSI 194 (213)
T ss_pred EEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 9999999999999999999998 8888888764
No 8
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=7.6e-42 Score=292.58 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=168.7
Q ss_pred cCCCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCC
Q 028162 26 SAAPSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGG 103 (212)
Q Consensus 26 ~~~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~ 103 (212)
+..++++++.+ ++.++||+| |++|++ +|+|+|||+++||||||+|+|.+.+.++.+++++||++|+++|++++||+
T Consensus 2 ~~~yd~~~~~fsp~Grl~QvEYA~~av~--~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~ 79 (253)
T PTZ00246 2 SRRYDSRTTTFSPEGRLYQVEYALEAIN--NASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGL 79 (253)
T ss_pred CCccCCCCceECCCCEEhHHHHHHHHHH--hCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEc
Confidence 34566666654 466799999 999999 99999999999999999999999987777778999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCeEEEEeCCCceeec
Q 028162 104 AADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKG 178 (212)
Q Consensus 104 ~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~ 178 (212)
.+|++.+.+.++.+++.|++.+++++++..+++.+++++|.|++ +||+|++||+|||+ .||+||++||+|++.++
T Consensus 80 ~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~ 159 (253)
T PTZ00246 80 TADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGW 159 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecc
Confidence 99999999999999999999999999999999999999998753 49999999999995 68999999999999999
Q ss_pred CceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 179 TRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 179 ~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++|+|+|+..++++||++|+++ +++.+|++++
T Consensus 160 ~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a 195 (253)
T PTZ00246 160 KATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKV 195 (253)
T ss_pred eEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 99999999999999999999998 7888887654
No 9
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.1e-42 Score=285.59 Aligned_cols=170 Identities=23% Similarity=0.259 Sum_probs=156.7
Q ss_pred CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 37 ~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
++.++||+| |+++++ +|+|+|||+++||||||+|+|.+.+ + .++.+||++|+++++|++||+.+|++.+.++++
T Consensus 10 p~Grl~Qveya~~av~--~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r 84 (211)
T cd03749 10 PQGRLFQVEYAMEAVK--QGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMR 84 (211)
T ss_pred CCCeEeHHHHHHHHHh--cCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHH
Confidence 356799999 999999 9999999999999999999998763 3 356799999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----CCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHH
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAY 191 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~r----~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~ 191 (212)
.+++.|+++++++++++.+|+.+++++|.++ .+||+|++||+|||++||+||++||+|++.+++++|+|+|+..++
T Consensus 85 ~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~ 164 (211)
T cd03749 85 QECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARSQSAR 164 (211)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCCcHHHH
Confidence 9999999999999999999999999988753 459999999999998899999999999999999999999999999
Q ss_pred HHHHccCcC--c---hhHHHHHhcc
Q 028162 192 GVLDSGCVS--I---SHVFMLLLNG 211 (212)
Q Consensus 192 ~~Le~~y~~--~---~~~~~~~~~~ 211 (212)
++||++|++ + +|+.++++++
T Consensus 165 ~~Le~~~~~~~~ms~ee~i~~~~~~ 189 (211)
T cd03749 165 TYLERHFEEFEDCSLEELIKHALRA 189 (211)
T ss_pred HHHHHhhccccCCCHHHHHHHHHHH
Confidence 999999993 4 7888887653
No 10
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.3e-41 Score=290.50 Aligned_cols=186 Identities=54% Similarity=0.916 Sum_probs=173.6
Q ss_pred cCCCCcCCCCCCCcchhhHH-------HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEE
Q 028162 26 SAAPSFSLPLSTDFDEFQKD-------TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLG 98 (212)
Q Consensus 26 ~~~~~~~~p~~~~~~~~q~e-------a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~ 98 (212)
..++.|..|+...|.-|..| +.++..+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~ 82 (247)
T PTZ00488 3 CGPEHFEHPPGAHPGDFLAEYTFDHGDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLG 82 (247)
T ss_pred CCccccccCCCCCHHHHHHHhhhccccCCcccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEE
Confidence 34567888888888888877 45566677999999999999999999999999999999999999999999999
Q ss_pred EecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeec
Q 028162 99 TMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 178 (212)
Q Consensus 99 ~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~ 178 (212)
++||+.+|++.+.++++.+++.|+++++++|+++.+|++|++++|.+|++|+.+++||||||++||+||++||+|++.++
T Consensus 83 ~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~ 162 (247)
T PTZ00488 83 TMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHG 162 (247)
T ss_pred EeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEcCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 179 TRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 179 ~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++|+|+|+.+++++||+.|+++ +|+++|++.+
T Consensus 163 ~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~ka 198 (247)
T PTZ00488 163 NMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRA 198 (247)
T ss_pred CCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHH
Confidence 99999999999999999999998 7888887653
No 11
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-41 Score=284.23 Aligned_cols=179 Identities=24% Similarity=0.354 Sum_probs=164.5
Q ss_pred CcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHH
Q 028162 30 SFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADC 107 (212)
Q Consensus 30 ~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~ 107 (212)
.+++..+ ++.++||+| |.++++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||+.+|+
T Consensus 3 ~~~~~~fsp~G~l~Q~eya~~av~--~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 3 DRAITVFSPDGRLYQVEYAREAVK--RGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCceECCCCeEhHHHHHHHHHH--cCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 3344442 366799999 999999 99999999999999999999998 477878899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEE
Q 028162 108 QFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV 183 (212)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~ai 183 (212)
+.+.+.++.+++.|+++++++++++.++++|++++|.|++ +|+++++||+|||++||+||++||+|++.+++++++
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~ 159 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAI 159 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEE
Confidence 9999999999999999999999999999999999988743 499999999999998999999999999999999999
Q ss_pred cCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 184 GSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 184 Gsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
|+|+..++++||+.|+|+ +|+++|++.+
T Consensus 160 G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~ 190 (211)
T cd03756 160 GSGRQAVTEFLEKEYKEDMSLEEAIELALKA 190 (211)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 999999999999999998 7888887653
No 12
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.3e-41 Score=283.63 Aligned_cols=180 Identities=23% Similarity=0.347 Sum_probs=165.5
Q ss_pred CCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhH
Q 028162 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (212)
Q Consensus 29 ~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 106 (212)
++++.+.+ ++.+++|+| |.++++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||+.+|
T Consensus 3 ~~~~~~~f~p~Grl~Qieya~~av~--~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 79 (224)
T TIGR03633 3 YDRAITVFSPDGRLYQVEYAREAVK--RGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVAD 79 (224)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHH--cCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHh
Confidence 34444443 466799999 999999 99999999999999999999998 57888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----CCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceE
Q 028162 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS 182 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r----~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~a 182 (212)
++.+.+.++.++..|+++++++++++.++++|++++|.|+ .+||+|++||||||++||+||.+||.|++.++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a 159 (224)
T TIGR03633 80 ARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATA 159 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEE
Confidence 9999999999999999999999999999999999998874 349999999999998899999999999999999999
Q ss_pred EcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 183 VGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 183 iGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+|+|+..++++||+.|+++ +|+++|++.+
T Consensus 160 ~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~a 191 (224)
T TIGR03633 160 IGAGRQAVTEFLEKEYREDLSLDEAIELALKA 191 (224)
T ss_pred ECCCCHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 9999999999999999998 7888887653
No 13
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.2e-41 Score=276.17 Aligned_cols=155 Identities=71% Similarity=1.158 Sum_probs=150.3
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLN 210 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~ 210 (212)
+++++++|.+|++||+|++||||||++||+||++||+|++.+++++|+|+|+.+++++||+.|+|+ +|+.+|++.
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 158 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARR 158 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998999999999999999999999999999999999999998 777777754
No 14
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.5e-41 Score=281.56 Aligned_cols=173 Identities=20% Similarity=0.191 Sum_probs=157.3
Q ss_pred CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 37 ~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
++.++||+| |++|++ .+|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|++||+.+|++.+.++++
T Consensus 11 p~Grl~Qveya~~a~~-~~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r 88 (215)
T cd03754 11 PEGRLYQVEYAFKAVK-NAGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRAR 88 (215)
T ss_pred CCCeEeHHHhHHHHHh-cCCccEEEEEeCCEEEEEEeccccc-cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHH
Confidence 356799999 999997 2488999999999999999999987 5666668999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHH
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYA 190 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a 190 (212)
.+++.|+++++++|+++.+|+++++++|.|+. +||++++||||||+ +||+||++||+|++.+++++|+|+|+..+
T Consensus 89 ~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~ 168 (215)
T cd03754 89 YEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEA 168 (215)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHH
Confidence 99999999999999999999999999776632 39999999999996 68999999999999999999999999999
Q ss_pred HHHHHccCcCc-------hhHHHHHhcc
Q 028162 191 YGVLDSGCVSI-------SHVFMLLLNG 211 (212)
Q Consensus 191 ~~~Le~~y~~~-------~~~~~~~~~~ 211 (212)
+++||+.|+++ +|+.+|++.+
T Consensus 169 ~~~Le~~~~~~~~~~~s~eeai~l~~~a 196 (215)
T cd03754 169 TNFLEKKLKKKPDLIESYEETVELAISC 196 (215)
T ss_pred HHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 99999999993 6777777653
No 15
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=7.2e-41 Score=284.53 Aligned_cols=181 Identities=23% Similarity=0.347 Sum_probs=165.9
Q ss_pred CCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChh
Q 028162 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (212)
Q Consensus 28 ~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 105 (212)
.+.++...+ ++.+++|+| |.++++ +|+|+|||+++||||||+|+|.+ +.++..++.+||++|++++++++||..+
T Consensus 9 ~y~~~~~~fsp~Gr~~Q~eya~~av~--~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 85 (241)
T PRK03996 9 GYDRAITIFSPDGRLYQVEYAREAVK--RGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVA 85 (241)
T ss_pred ccCCCCceECCCCeEhHHHHHHHHHH--hCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHH
Confidence 344444442 356699999 999999 99999999999999999999998 5788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCce
Q 028162 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
|++.+.++++.+++.|+++++++++++.+|+++++++|.|++ +||+|++||||||++||+||++||+|++.+++++
T Consensus 86 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~ 165 (241)
T PRK03996 86 DARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKAT 165 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999988853 4999999999999989999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
|+|+|+..++++||+.|+++ +|+.+|++.+
T Consensus 166 a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~a 198 (241)
T PRK03996 166 AIGAGRDTVMEFLEKNYKEDLSLEEAIELALKA 198 (241)
T ss_pred EECCCcHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 99999999999999999998 7888887653
No 16
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.4e-40 Score=276.94 Aligned_cols=172 Identities=24% Similarity=0.333 Sum_probs=160.8
Q ss_pred CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 37 ~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
++.+++|+| |.++++ +|+|+|||+++||||||+|+|.+. +++..++.+||++|++++++++||..+|++.+.+.++
T Consensus 10 ~~G~~~q~eya~~~~~--~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~ 86 (209)
T cd01911 10 PEGRLFQVEYALEAVK--NGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRAR 86 (209)
T ss_pred CCCEEeHHHHHHHHHH--cCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHH
Confidence 467799999 999998 999999999999999999999996 5677789999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCC-CCeEEEEeCCCceeecCceEEcCChHHH
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYA 190 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~~~aiGsgs~~a 190 (212)
.+++.|+++++++++++.+|+++++++|.|+. .|++|++||+|||++ ||+||.+||.|++.+++++++|+|+.++
T Consensus 87 ~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~ 166 (209)
T cd01911 87 VEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEA 166 (209)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHH
Confidence 99999999999999999999999999987743 499999999999976 8999999999999999999999999999
Q ss_pred HHHHHccCcCc---hhHHHHHhcc
Q 028162 191 YGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 191 ~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++||+.|+|+ +|+++|++.+
T Consensus 167 ~~~L~~~~~~~ms~~ea~~l~~~~ 190 (209)
T cd01911 167 KTFLEKRYKKDLTLEEAIKLALKA 190 (209)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHH
Confidence 99999999998 7888887653
No 17
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.2e-40 Score=270.65 Aligned_cols=159 Identities=24% Similarity=0.261 Sum_probs=149.3
Q ss_pred CCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHH
Q 028162 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (212)
Q Consensus 53 ~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~ 132 (212)
++|+|+|||+++||||||+|+|.+.+.++..++++||++|++++++++||..+|++.+.++++.+++.|+++++++++++
T Consensus 1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 80 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK 80 (195)
T ss_pred CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 37999999999999999999999997777788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEEEEcCC-CCeEEEEeCCCceeecC-ceEEcCChHHHHHHHHccCcCc---hhHHHH
Q 028162 133 GASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGT-RFSVGSGSPYAYGVLDSGCVSI---SHVFML 207 (212)
Q Consensus 133 ~la~~ls~~l~~~r~~p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~-~~aiGsgs~~a~~~Le~~y~~~---~~~~~~ 207 (212)
.+|++|++++|.+|..||+|++||||||++ ||+||++||+|++..++ ++|+|+|++.++++||+.|+|+ +|+.+|
T Consensus 81 ~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 160 (195)
T cd03759 81 TFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFET 160 (195)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 999999999999888899999999999964 59999999999998888 7799999999999999999998 788888
Q ss_pred Hhcc
Q 028162 208 LLNG 211 (212)
Q Consensus 208 ~~~~ 211 (212)
++.+
T Consensus 161 ~~~~ 164 (195)
T cd03759 161 ISQA 164 (195)
T ss_pred HHHH
Confidence 7653
No 18
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=268.77 Aligned_cols=170 Identities=26% Similarity=0.356 Sum_probs=159.4
Q ss_pred CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 37 ~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
+..|+||+| |.+||| .|+|.|||+.++|||||++||+++ .+..+.++.||++|++||+|++||+.||++.++++.|
T Consensus 17 pEGRlfQVEYaieAik--LGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~ar 93 (241)
T KOG0176|consen 17 PEGRLFQVEYAIEAIK--LGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERAR 93 (241)
T ss_pred CCceeeehhhHHHHHh--cCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHH
Confidence 346799999 999999 999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhhc---------CCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCC
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSYR---------GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSG 186 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~r---------~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsg 186 (212)
.+|++|.+.|+++|+|+.+.+.++++...+- .+||+|++++||+|++||+||+.||+|+++.+++-|+|||
T Consensus 94 v~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~AKAIGSg 173 (241)
T KOG0176|consen 94 VETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYKAKAIGSG 173 (241)
T ss_pred HHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEEecceecccc
Confidence 9999999999999999999999999987662 2499999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCcCc---hhHHHHHh
Q 028162 187 SPYAYGVLDSGCVSI---SHVFMLLL 209 (212)
Q Consensus 187 s~~a~~~Le~~y~~~---~~~~~~~~ 209 (212)
+.-|++.|++.|+++ +|...++|
T Consensus 174 sEga~~~L~~e~~~~ltL~ea~~~~L 199 (241)
T KOG0176|consen 174 SEGAESSLQEEYHKDLTLKEAEKIVL 199 (241)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHH
Confidence 999999999999998 55555544
No 19
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-39 Score=266.63 Aligned_cols=155 Identities=23% Similarity=0.283 Sum_probs=146.8
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
+|+|||+++||||||+|+|.+.|.++.+++++||++|++++++++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-C-CCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHh
Q 028162 136 KLLANILYSYR-G-MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLL 209 (212)
Q Consensus 136 ~~ls~~l~~~r-~-~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~ 209 (212)
+++++++|.|+ . +||++++||+|||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+|+ +|+.++++
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~ 161 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMK 161 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 99999998763 3 49999999999996 6899999999999999999999999999999999999998 77777775
Q ss_pred c
Q 028162 210 N 210 (212)
Q Consensus 210 ~ 210 (212)
.
T Consensus 162 ~ 162 (193)
T cd03758 162 K 162 (193)
T ss_pred H
Confidence 4
No 20
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.5e-39 Score=263.51 Aligned_cols=156 Identities=40% Similarity=0.587 Sum_probs=150.5
Q ss_pred CceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHH
Q 028162 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (212)
Q Consensus 55 GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~l 134 (212)
|+|+|||+++||||||+|+|.+.|.++.+++++||++|++++++++||..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhc
Q 028162 135 SKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLN 210 (212)
Q Consensus 135 a~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~ 210 (212)
+++|++++|.++..|++|++|+||||++||+||++||+|++.+++++++|+|+.+++++||+.|+++ +|+..|++.
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~ 159 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVR 159 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999999988899999999999999999999999999999999999999999999999999998 777777654
No 21
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-39 Score=269.54 Aligned_cols=158 Identities=25% Similarity=0.274 Sum_probs=150.1
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~ 133 (212)
+|+|+|||+++||||||+|+|.+.|.++.+++++||++|++++++++||..+|++.+.+.++.+++.|+++++++++++.
T Consensus 7 ~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~ 86 (212)
T cd03757 7 NGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEA 86 (212)
T ss_pred CCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHH
Confidence 89999999999999999999999988888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEEEEcCC-CCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCc---------Cc--
Q 028162 134 ASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCV---------SI-- 201 (212)
Q Consensus 134 la~~ls~~l~~~r~~p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~---------~~-- 201 (212)
+++++++++|.+|.+||++++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.|+ ++
T Consensus 87 la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms 166 (212)
T cd03757 87 IAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLS 166 (212)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCC
Confidence 99999999999888899999999999965 5999999999999999999999999999999999985 65
Q ss_pred -hhHHHHHhcc
Q 028162 202 -SHVFMLLLNG 211 (212)
Q Consensus 202 -~~~~~~~~~~ 211 (212)
+|+.+|++.+
T Consensus 167 ~eea~~l~~~~ 177 (212)
T cd03757 167 LEEAVSLVKDA 177 (212)
T ss_pred HHHHHHHHHHH
Confidence 8888887653
No 22
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-38 Score=263.23 Aligned_cols=158 Identities=25% Similarity=0.307 Sum_probs=147.8
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHh-hhhhhcCCcCCHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCR-LHELANKRRISVT 132 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~-~~~~~~~~~isv~ 132 (212)
+|+|+|||+++||||||+|+|.+.|.++.+++++||++|+++++++++|+.+|++.+.++++.+++ .|+++++++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 589999999999999999999998899999999999999999999999999999999999999987 4667899999999
Q ss_pred HHHHHHHHHHHhhc--CCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcC--c---hhH
Q 028162 133 GASKLLANILYSYR--GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVS--I---SHV 204 (212)
Q Consensus 133 ~la~~ls~~l~~~r--~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~--~---~~~ 204 (212)
.+|+++++++|.+| .+||+|++|+||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|++ + +|+
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea 160 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEA 160 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHH
Confidence 99999999999876 469999999999997 689999999999999999999999999999999999998 6 777
Q ss_pred HHHHhcc
Q 028162 205 FMLLLNG 211 (212)
Q Consensus 205 ~~~~~~~ 211 (212)
.+|++.+
T Consensus 161 ~~l~~~~ 167 (197)
T cd03760 161 RALIEEC 167 (197)
T ss_pred HHHHHHH
Confidence 7777653
No 23
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-38 Score=259.21 Aligned_cols=155 Identities=41% Similarity=0.579 Sum_probs=149.3
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|+.+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLN 210 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~ 210 (212)
+++++++|.+|.+||+|++||||||++||+||++||+|++.+++++|+|+|+++++++||+.|+++ +++.++++.
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~ 158 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIR 158 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 999999999998899999999999998899999999999999999999999999999999999998 777777654
No 24
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-38 Score=259.32 Aligned_cols=154 Identities=31% Similarity=0.428 Sum_probs=147.6
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++++|||+|++++++++||..+|++.+.+.++.+++.|+++++++++++.+|
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLN 210 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~ 210 (212)
++|++++|.|++ |++|++||||||++||+||.+||+|++.+++++|+|+|+..++++||++|+|+ +|+.+|++.
T Consensus 81 ~~l~~~l~~~~~-p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~ 157 (189)
T cd03763 81 TMLKQHLFRYQG-HIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCE 157 (189)
T ss_pred HHHHHHHHHcCC-ccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 999999999876 89999999999998999999999999999999999999999999999999998 777777654
No 25
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-37 Score=255.33 Aligned_cols=155 Identities=29% Similarity=0.464 Sum_probs=147.0
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
+|+|||+++||||||+|+|.+.|.++.+++++||++|++++++++||+.+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++++|.+|. ||++++||||||+ +||+||++||.|++.++++.++|+|+.+++++||+.|+++ +|+.+|++.+
T Consensus 81 ~~l~~~~~~~~~-~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~a 159 (188)
T cd03762 81 SLFKNLCYNYKE-MLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNA 159 (188)
T ss_pred HHHHHHHHhccc-cceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 999999999874 6999999999996 7899999999999999998888999999999999999998 7777777643
No 26
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.5e-37 Score=259.63 Aligned_cols=157 Identities=26% Similarity=0.361 Sum_probs=146.2
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~ 133 (212)
+|+|+|||+++||||||+|+|.+.|.++.+++++||++|+++++|++||+.+|++.+.++++.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC---CCceEEEEEEEEcC--CCCeEEEEeCCCc-eeecCceEEcCChHHHHHHHHccCcCc---hhH
Q 028162 134 ASKLLANILYSYRG---MGLSVGTMIAGWDE--TGPGLYYVDSEGG-RLKGTRFSVGSGSPYAYGVLDSGCVSI---SHV 204 (212)
Q Consensus 134 la~~ls~~l~~~r~---~p~~v~~ivaG~D~--~gp~Ly~vDp~G~-~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~ 204 (212)
+|++|++++|.++. .||+|++||||||+ .+|+||++||+|+ +..++++|+|+|+.+++++||++|+++ +++
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea 160 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA 160 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence 99999999987642 48999999999996 4699999999995 666789999999999999999999998 777
Q ss_pred HHHHhc
Q 028162 205 FMLLLN 210 (212)
Q Consensus 205 ~~~~~~ 210 (212)
.+|++.
T Consensus 161 i~l~~~ 166 (219)
T TIGR03690 161 LRVAVE 166 (219)
T ss_pred HHHHHH
Confidence 777654
No 27
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.1e-37 Score=250.56 Aligned_cols=156 Identities=43% Similarity=0.615 Sum_probs=149.4
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++..++.+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++++|.+|+.|+++++||||||+ ++|+||.+||+|++.+++++++|+++++++++||+.|+|+ ++++++++++
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~ 160 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKA 160 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 99999999999899999999999997 6899999999999999999999999999999999999998 7888887653
No 28
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=5.3e-36 Score=242.84 Aligned_cols=156 Identities=37% Similarity=0.493 Sum_probs=149.1
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|..+..++.+|||+|++++++++||..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHh
Q 028162 136 KLLANILYSYRG--MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLL 209 (212)
Q Consensus 136 ~~ls~~l~~~r~--~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~ 209 (212)
++|++++|.+|+ .|+++++|+||||+ .+|+||.+||+|++.+++++|+|+|+.+++++||+.|+++ +++.++++
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~ 160 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELAL 160 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 999999999998 89999999999997 7899999999999999999999999999999999999998 77888776
Q ss_pred cc
Q 028162 210 NG 211 (212)
Q Consensus 210 ~~ 211 (212)
++
T Consensus 161 ~~ 162 (182)
T cd01906 161 KA 162 (182)
T ss_pred HH
Confidence 53
No 29
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=8.8e-36 Score=251.76 Aligned_cols=169 Identities=14% Similarity=0.211 Sum_probs=149.9
Q ss_pred CCCCCCCcchhhHH----HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHH
Q 028162 32 SLPLSTDFDEFQKD----TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADC 107 (212)
Q Consensus 32 ~~p~~~~~~~~q~e----a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~ 107 (212)
.+|..+.|...-.+ |.+|++ +|+|+|||+++||||||+|++. ++.+||++|+++|+|++||+.+|+
T Consensus 2 ~~~~~~~~~~~~~~~~EYA~kav~--~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~ 71 (228)
T TIGR03691 2 TMPFYVSPEQIMRDRAELARKGIA--RGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEF 71 (228)
T ss_pred CcCcccCHHHHHhhHHHHHHHHHH--cCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHH
Confidence 56777777754333 999998 9999999999999999999972 468999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcC-CcCCHHHHHHHHHHHHHhh---cCCCceEEEEEEEEcC--CCCeEEEEeCCCceeecC-c
Q 028162 108 QFWHRNLGIKCRLHELANK-RRISVTGASKLLANILYSY---RGMGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGT-R 180 (212)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~-~~isv~~la~~ls~~l~~~---r~~p~~v~~ivaG~D~--~gp~Ly~vDp~G~~~~~~-~ 180 (212)
+.++++.+.+++.|++.++ .+++++.+|+.+++.++.+ +.+||+|++|++|||+ .||+||.+||+|++.+++ +
T Consensus 72 ~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~ 151 (228)
T TIGR03691 72 ENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGF 151 (228)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccce
Confidence 9999999999999999998 6899999999888877643 4569999999999984 689999999999999977 7
Q ss_pred eEEcCChHHHHHHHHccCcCc---hhHHHHHhc
Q 028162 181 FSVGSGSPYAYGVLDSGCVSI---SHVFMLLLN 210 (212)
Q Consensus 181 ~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~ 210 (212)
+|+|+|++.++++||++|+++ +|+.+||++
T Consensus 152 ~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~ 184 (228)
T TIGR03691 152 VVMGGTTEPIATALKESYRDGLSLADALGLAVQ 184 (228)
T ss_pred EEECCChHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999998 777777665
No 30
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=9.9e-36 Score=242.77 Aligned_cols=158 Identities=32% Similarity=0.423 Sum_probs=143.7
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCC-ccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQS-VKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~-~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~ 132 (212)
+|+|+|||+++||||||+|+|.+.|+.+..++ .+||++|++++++++||..+|++.+.++++.+++.|++.++++++++
T Consensus 3 ~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (190)
T PF00227_consen 3 NGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPE 82 (190)
T ss_dssp TSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHH
T ss_pred CCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccch
Confidence 99999999999999999999999888885555 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----hhcCCCceEEEEEEEEcCCC-CeEEEEeCCCceeec-CceEEcCChHHHHHHHHccCcCc---hh
Q 028162 133 GASKLLANILY----SYRGMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKG-TRFSVGSGSPYAYGVLDSGCVSI---SH 203 (212)
Q Consensus 133 ~la~~ls~~l~----~~r~~p~~v~~ivaG~D~~g-p~Ly~vDp~G~~~~~-~~~aiGsgs~~a~~~Le~~y~~~---~~ 203 (212)
.+++.+++.++ ..+..|+++++|+||||+++ |+||.+||+|++.++ .++|+|+|+..++++||+.|+++ +|
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~e 162 (190)
T PF00227_consen 83 YLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEE 162 (190)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHH
T ss_pred hhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHH
Confidence 66666665554 33557999999999999876 999999999999999 59999999999999999999998 88
Q ss_pred HHHHHhcc
Q 028162 204 VFMLLLNG 211 (212)
Q Consensus 204 ~~~~~~~~ 211 (212)
++++++.+
T Consensus 163 a~~~~~~~ 170 (190)
T PF00227_consen 163 AIELALKA 170 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887753
No 31
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-36 Score=245.94 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=157.6
Q ss_pred CCcC-CCCCCCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhH
Q 028162 29 PSFS-LPLSTDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (212)
Q Consensus 29 ~~~~-~p~~~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 106 (212)
+.++ ....++.++||+| |.||++ +++|+||||++||||++++|-.++ ++...+..+||+.|++||+|+++|+.+|
T Consensus 8 yDls~s~fSpdGrvfQveYA~KAve--n~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~D 84 (254)
T KOG0184|consen 8 YDLSASTFSPDGRVFQVEYAQKAVE--NSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPD 84 (254)
T ss_pred ccccceeeCCCCceehHHHHHHHHh--cCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccc
Confidence 3444 2234577899999 999999 999999999999999999999997 8888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCC----CceEEEEEEEEcCCCCeEEEEeCCCceeecCceE
Q 028162 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGM----GLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS 182 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~----p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~a 182 (212)
.+.+..+++.++..|+-+++.++|...+|.++++++|.++.+ ||++++++++||.+||+||.+||+|..+.++++|
T Consensus 85 g~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aa 164 (254)
T KOG0184|consen 85 GRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAA 164 (254)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeee
Confidence 999999999999999999999999999999999999998753 9999999999999999999999999999999999
Q ss_pred EcCChHHHHHHHHccCcCc
Q 028162 183 VGSGSPYAYGVLDSGCVSI 201 (212)
Q Consensus 183 iGsgs~~a~~~Le~~y~~~ 201 (212)
+|.|.+.|...||++--..
T Consensus 165 iGKgrq~aKtElEKL~~~~ 183 (254)
T KOG0184|consen 165 IGKGRQAAKTELEKLKIDE 183 (254)
T ss_pred ccchhHHHHHHHHhccccc
Confidence 9999999999999975543
No 32
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=243.37 Aligned_cols=174 Identities=22% Similarity=0.263 Sum_probs=164.5
Q ss_pred CCCcCCCCCCCcc--hhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCCh
Q 028162 28 APSFSLPLSTDFD--EFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (212)
Q Consensus 28 ~~~~~~p~~~~~~--~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~ 104 (212)
.++|++++ ++|+ +-|+| |+.|++ +|.|.|||+..||||||++++..+ .+....+++||+.|.++|+|.+||+.
T Consensus 5 ~y~fslTt-FSpsGKL~QieyAL~Av~--~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmg 80 (233)
T KOG0181|consen 5 GYSFSLTT-FSPSGKLVQIEYALTAVV--NGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMG 80 (233)
T ss_pred ccceeeEE-EcCCCceehHHHHHHHHh--CCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCC
Confidence 67899988 4566 89999 999999 999999999999999999998876 88889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCc
Q 028162 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTR 180 (212)
Q Consensus 105 aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~ 180 (212)
+|++.+++..++.++.|...++++|++..+.+.++..+|+|++ +||+++++|||||+.+|.||++||+|++..|++
T Consensus 81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wka 160 (233)
T KOG0181|consen 81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKA 160 (233)
T ss_pred CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhh
Confidence 9999999999999999999999999999999999999999986 399999999999999999999999999999999
Q ss_pred eEEcCChHHHHHHHHccCcCchhHH
Q 028162 181 FSVGSGSPYAYGVLDSGCVSISHVF 205 (212)
Q Consensus 181 ~aiGsgs~~a~~~Le~~y~~~~~~~ 205 (212)
+|.|.+...+.++||++|.++.||-
T Consensus 161 tA~Gkn~v~aktFlEkR~~edleld 185 (233)
T KOG0181|consen 161 TAMGKNYVNAKTFLEKRYNEDLELD 185 (233)
T ss_pred hhhccCcchHHHHHHHHhccccccc
Confidence 9999999999999999999985543
No 33
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-36 Score=242.88 Aligned_cols=178 Identities=20% Similarity=0.302 Sum_probs=163.9
Q ss_pred CCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhH
Q 028162 29 PSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (212)
Q Consensus 29 ~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 106 (212)
+..+++.+ +|.++||+| |.+|++ +|+|+||++++|+|||+.+++... .+...+.+.||..+++|+++++||+.||
T Consensus 4 ydraltvFSPDGhL~QVEYAqEAvr--kGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQEAVR--KGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred cccceEEECCCCCEEeeHhHHHHHh--cCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCcc
Confidence 44444442 356699999 999999 999999999999999999998775 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCC-CeEEEEeCCCceeecCce
Q 028162 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~g-p~Ly~vDp~G~~~~~~~~ 181 (212)
++.++++.+.+|+.|+++...+++++.++++|+.+.|.|++ +||+++++|+|+|++| |.||.+||+|.+.+|++.
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~ 160 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKAN 160 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhcc
Confidence 99999999999999999999999999999999999999975 4999999999999987 999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcCc-----hhHHHHHh
Q 028162 182 SVGSGSPYAYGVLDSGCVSI-----SHVFMLLL 209 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~~-----~~~~~~~~ 209 (212)
|+|.++..+..+||++|++. .++.+|+.
T Consensus 161 aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~i 193 (249)
T KOG0183|consen 161 AIGRSSKTVREFLEKNYKEEAIATEGETIKLAI 193 (249)
T ss_pred ccccccHHHHHHHHHhcccccccccccHHHHHH
Confidence 99999999999999999987 66666654
No 34
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-35 Score=237.92 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=158.5
Q ss_pred CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 37 ~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
+.+|+|||| |+++|. +.+|+|||..+||||||+++|.++.-+-.+..++||++|+|+|+|+.+|+.+|+..+++++|
T Consensus 14 pEGRLyQVEyAmeais--~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aR 91 (249)
T KOG0178|consen 14 PEGRLYQVEYAMEAIS--HAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYAR 91 (249)
T ss_pred CCcchHHHHHHHHHHh--hhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHH
Confidence 457899999 999998 99999999999999999999999744445678999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCC----CceEEEEEEEEcCC-CCeEEEEeCCCceeecCceEEcCChHHH
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSYRGM----GLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYA 190 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~----p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~~~aiGsgs~~a 190 (212)
..++.|.++++++||++.|.+.++++.|.|+++ ||+|+++.+|||.. |.+||+.||+|++-.|++.++|..+..|
T Consensus 92 i~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa 171 (249)
T KOG0178|consen 92 IIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAA 171 (249)
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHH
Confidence 999999999999999999999999999999875 99999999999984 7999999999999999999999999999
Q ss_pred HHHHHccCcCc----hhHHHHHh
Q 028162 191 YGVLDSGCVSI----SHVFMLLL 209 (212)
Q Consensus 191 ~~~Le~~y~~~----~~~~~~~~ 209 (212)
+.+|.+.|+++ +++..||+
T Consensus 172 ~s~Lkqdykdd~~~~~eA~~lai 194 (249)
T KOG0178|consen 172 QSMLKQDYKDDENDLEEAKALAI 194 (249)
T ss_pred HHHHHhhhccccccHHHHHHHHH
Confidence 99999999998 45555554
No 35
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-34 Score=244.60 Aligned_cols=154 Identities=20% Similarity=0.243 Sum_probs=137.4
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeec----CcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCC-cCC
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEIN----PYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR-RIS 130 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~----~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~-~is 130 (212)
|-+|||+++||||||+|+|.+.+ ++..++.+||++|+ +||+|+.||+.||++.+++++|.+++.|++++++ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 46899999999999999999875 44445899999998 8999999999999999999999999999999999 799
Q ss_pred HHHHHHHHHHHHHhh----c------CCCceEEEEEEEEc-CCCCeEEEEeCCCceeecCc----eEEcCChHHHHHHHH
Q 028162 131 VTGASKLLANILYSY----R------GMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTR----FSVGSGSPYAYGVLD 195 (212)
Q Consensus 131 v~~la~~ls~~l~~~----r------~~p~~v~~ivaG~D-~~gp~Ly~vDp~G~~~~~~~----~aiGsgs~~a~~~Le 195 (212)
|+.+|++++++++.+ . .+||+|++|||||| +.||+||++||+|++.++++ +|+|+ +.+++++||
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999986652 2 36999999999999 46899999999999999954 79996 799999999
Q ss_pred ccCcCc---hhHHHHHhcc
Q 028162 196 SGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 196 ~~y~~~---~~~~~~~~~~ 211 (212)
++|+++ +|+.+||+.+
T Consensus 159 k~yk~~ms~eeai~la~~a 177 (236)
T cd03765 159 RVITPDTSLEDAAKCALVS 177 (236)
T ss_pred HhcCCCCCHHHHHHHHHHH
Confidence 999998 7777777653
No 36
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-34 Score=230.27 Aligned_cols=158 Identities=32% Similarity=0.541 Sum_probs=145.0
Q ss_pred cCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCH
Q 028162 52 HAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV 131 (212)
Q Consensus 52 ~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv 131 (212)
.+.|||++|++|+|||||++|+|.+.|.+|.++..+|+.+|+|+|+||-||.+||.|.+.+.++.++..|..+++++++|
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEE-cCChHHHHHHHHccCcCc---hhHHH
Q 028162 132 TGASKLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGCVSI---SHVFM 206 (212)
Q Consensus 132 ~~la~~ls~~l~~~r~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~ai-Gsgs~~a~~~Le~~y~~~---~~~~~ 206 (212)
...|+.+++++|+||.. +..++||||||+ +|.++|.+ |.|..+..+.+|+ ||||.++++++|.+|||+ ||..+
T Consensus 96 ~~aA~l~r~~~Y~~re~-L~AgliVAGwD~~~gGqVY~i-plGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~ 173 (224)
T KOG0174|consen 96 HTAASLFREICYNYREM-LSAGLIVAGWDEKEGGQVYSI-PLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVR 173 (224)
T ss_pred HHHHHHHHHHHHhCHHh-hhcceEEeecccccCceEEEe-ecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHH
Confidence 99999999999999987 889999999998 46789998 7777766667776 899999999999999999 55555
Q ss_pred HHhcc
Q 028162 207 LLLNG 211 (212)
Q Consensus 207 ~~~~~ 211 (212)
+..||
T Consensus 174 fvk~A 178 (224)
T KOG0174|consen 174 FVKNA 178 (224)
T ss_pred HHHHH
Confidence 55543
No 37
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.7e-32 Score=220.51 Aligned_cols=171 Identities=16% Similarity=0.161 Sum_probs=161.0
Q ss_pred CcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHH
Q 028162 38 DFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGI 116 (212)
Q Consensus 38 ~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~ 116 (212)
..+|||+| |++||+ ..|-|+||++++|++|+++.++.+. +++.+.++..+|+|+++|+|+++|..+|.++.+++++.
T Consensus 19 eGrLyQVEYafkAin-~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~ 96 (246)
T KOG0182|consen 19 EGRLYQVEYAFKAIN-QAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARY 96 (246)
T ss_pred CceEEeeehHHHHhh-cCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHH
Confidence 45699999 999998 3389999999999999999999986 99999999999999999999999999999999999999
Q ss_pred HHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCC-CCeEEEEeCCCceeecCceEEcCChHHHH
Q 028162 117 KCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYAY 191 (212)
Q Consensus 117 ~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~ 191 (212)
++..+++.||.+||++.||++++++.|.|++ +|++|.+++.|+|++ ||.+|.+||.|-+..+++.|.|.....+.
T Consensus 97 eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~t 176 (246)
T KOG0182|consen 97 EAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEAT 176 (246)
T ss_pred HHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHH
Confidence 9999999999999999999999999999976 399999999999975 79999999999999999999999999999
Q ss_pred HHHHccCcCc-----hhHHHHHhc
Q 028162 192 GVLDSGCVSI-----SHVFMLLLN 210 (212)
Q Consensus 192 ~~Le~~y~~~-----~~~~~~~~~ 210 (212)
.+||++||++ ++++++|.-
T Consensus 177 sfLEKk~Kk~~~~t~~e~ve~ai~ 200 (246)
T KOG0182|consen 177 SFLEKKYKKDIDLTFEETVETAIS 200 (246)
T ss_pred HHHHHhhccCccchHHHHHHHHHH
Confidence 9999999997 788888753
No 38
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=3.9e-31 Score=214.51 Aligned_cols=147 Identities=20% Similarity=0.225 Sum_probs=128.4
Q ss_pred CceEEEEEeCCeEEEEEecCccCCceeecCCccceeee-cCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHH
Q 028162 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (212)
Q Consensus 55 GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~ 133 (212)
|||++||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..||+|.|.+.++.++++|+... ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHH
Confidence 79999999999999999999999999999999999999 999999999999999999999999999998321 466
Q ss_pred HHHHHHHHHHhhcC-CCceEEEEEEEEcCCCCeEEEEeCCCceeec--CceEEcCChHHHHHHHHccCc-CchhHHHHHh
Q 028162 134 ASKLLANILYSYRG-MGLSVGTMIAGWDETGPGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVLDSGCV-SISHVFMLLL 209 (212)
Q Consensus 134 la~~ls~~l~~~r~-~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~--~~~aiGsgs~~a~~~Le~~y~-~~~~~~~~~~ 209 (212)
+|+.+..+ ..++. .|+.+++|++ |. |+||++|+.|+..+. ++.++|||+.+++++||++|| |++|..+|+.
T Consensus 76 ~a~l~~~l-~~~~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~meA~~la~ 150 (172)
T PRK05456 76 AVELAKDW-RTDRYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDLSAEEIAE 150 (172)
T ss_pred HHHHHHHH-HhccCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCCCHHHHHH
Confidence 67666444 32332 3677988884 43 699999999999877 799999999999999999999 9999988887
Q ss_pred cc
Q 028162 210 NG 211 (212)
Q Consensus 210 ~~ 211 (212)
+|
T Consensus 151 ka 152 (172)
T PRK05456 151 KA 152 (172)
T ss_pred HH
Confidence 65
No 39
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=220.66 Aligned_cols=159 Identities=25% Similarity=0.294 Sum_probs=147.4
Q ss_pred CcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHH
Q 028162 38 DFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGI 116 (212)
Q Consensus 38 ~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~ 116 (212)
..++||+| |++|+| +|+++||+|.++-.||++=+|..+ .+ +...+|||+|++|++++++|+++|++.+.++++.
T Consensus 16 qGrl~QvEya~Eavk--qGsatVGLks~thaVLvAl~r~~s-eL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ 90 (264)
T KOG0863|consen 16 QGRLHQVEYAMEAVK--QGSATVGLKSRTHAVLVALKRAQS-EL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQ 90 (264)
T ss_pred cceehHHHHHHHHHh--cccceEeecccceEEEeeeccchh-HH--HHhhheeEecccccceEEeccCcchHHHHHHHHH
Confidence 56799999 999999 999999999999999999888765 33 3567999999999999999999999999999999
Q ss_pred HHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHH
Q 028162 117 KCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYG 192 (212)
Q Consensus 117 ~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~ 192 (212)
+|..+++.++++++|.-+...|.+.+|..++ +||+|+++++|||+.||+||.++|+|.+.++++.++|+.|+.+.+
T Consensus 91 ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsART 170 (264)
T KOG0863|consen 91 ECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSART 170 (264)
T ss_pred HHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchhhHHH
Confidence 9999999999999999999999999887644 499999999999999999999999999999999999999999999
Q ss_pred HHHccCcCc
Q 028162 193 VLDSGCVSI 201 (212)
Q Consensus 193 ~Le~~y~~~ 201 (212)
+||++..+.
T Consensus 171 yLEr~~e~f 179 (264)
T KOG0863|consen 171 YLERNLEEF 179 (264)
T ss_pred HHHHHHHHH
Confidence 999987653
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-31 Score=223.09 Aligned_cols=161 Identities=32% Similarity=0.472 Sum_probs=153.0
Q ss_pred hhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCC
Q 028162 48 ATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 127 (212)
Q Consensus 48 ~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~ 127 (212)
++.+ .|||++|++++||||+++|+|++.|.++..++.+||+.|.++|+||.+|-++|...+.+.+..+.++|+++.++
T Consensus 32 ~~tk--TGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R 109 (271)
T KOG0173|consen 32 KATK--TGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGR 109 (271)
T ss_pred cccc--cCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCC
Confidence 3455 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhH
Q 028162 128 RISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHV 204 (212)
Q Consensus 128 ~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~ 204 (212)
++.|-.+-+++.+.++.|.++ .+..+|++|+|+.||+||.+.|.|+.....+.+.|||+..|+.+||..|+|| +|.
T Consensus 110 ~~rVv~A~~mlkQ~LFrYqG~-IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea 188 (271)
T KOG0173|consen 110 KPRVVTALRMLKQHLFRYQGH-IGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEA 188 (271)
T ss_pred CCceeeHHHHHHHHHHHhcCc-ccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHH
Confidence 999999999999999999987 8899999999999999999999999999999999999999999999999999 777
Q ss_pred HHHHhcc
Q 028162 205 FMLLLNG 211 (212)
Q Consensus 205 ~~~~~~~ 211 (212)
..|+..|
T Consensus 189 ~~Lv~eA 195 (271)
T KOG0173|consen 189 IKLVCEA 195 (271)
T ss_pred HHHHHHH
Confidence 7777543
No 41
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=6.3e-31 Score=212.56 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=127.0
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecC-cEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINP-YMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~l 134 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++ +++|++||..+|+|.+.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999988774 44
Q ss_pred HHHHHHHH-HhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecC--ceEEcCChHHHHHHHHccCcCc-hhHHHHHhc
Q 028162 135 SKLLANIL-YSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT--RFSVGSGSPYAYGVLDSGCVSI-SHVFMLLLN 210 (212)
Q Consensus 135 a~~ls~~l-~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~--~~aiGsgs~~a~~~Le~~y~~~-~~~~~~~~~ 210 (212)
++.+..++ ++++++ +.+.+++++|| +||.+||.|+..+.+ +.++|||+.+|+++||.+||++ +...+||.+
T Consensus 76 a~l~~~l~~~~~~~~-l~a~~iv~~~~----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms~~~la~~ 150 (171)
T cd01913 76 VELAKDWRTDRYLRR-LEAMLIVADKE----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLSAEEIARK 150 (171)
T ss_pred HHHHHHHHhccCcCc-eEEEEEEeCCC----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 55544442 444443 45777776664 899999999999985 8899999999999999999995 677788876
Q ss_pred c
Q 028162 211 G 211 (212)
Q Consensus 211 ~ 211 (212)
|
T Consensus 151 A 151 (171)
T cd01913 151 A 151 (171)
T ss_pred H
Confidence 5
No 42
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=2.1e-30 Score=209.55 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=126.9
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeee-cCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~l 134 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..||+|.+.++++.++++|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999998743 4677
Q ss_pred HHHHHHH-HHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeec--CceEEcCChHHHHHHHHccCc-CchhHHHHHhc
Q 028162 135 SKLLANI-LYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVLDSGCV-SISHVFMLLLN 210 (212)
Q Consensus 135 a~~ls~~-l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~--~~~aiGsgs~~a~~~Le~~y~-~~~~~~~~~~~ 210 (212)
++.++++ .|.|+++ +.+.++++||| +||.+||.|...+. ++.++|||+.+|+++||.+|| ++++..+||.+
T Consensus 76 a~l~~~~~~~~~~~~-l~a~~iv~~~~----~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~sa~~la~~ 150 (171)
T TIGR03692 76 VELAKDWRTDRYLRR-LEAMLIVADKE----TSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLSAEEIARE 150 (171)
T ss_pred HHHHHHHhhcccccc-cEEEEEEEcCC----CEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCCHHHHHHH
Confidence 7777774 2333332 55777777554 89999999999996 588999999999999999995 77788888877
Q ss_pred c
Q 028162 211 G 211 (212)
Q Consensus 211 ~ 211 (212)
|
T Consensus 151 A 151 (171)
T TIGR03692 151 A 151 (171)
T ss_pred H
Confidence 5
No 43
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=209.54 Aligned_cols=153 Identities=27% Similarity=0.329 Sum_probs=145.5
Q ss_pred CCcchhhHHHHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHH
Q 028162 37 TDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGI 116 (212)
Q Consensus 37 ~~~~~~q~ea~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~ 116 (212)
.+|++|-- +|+|+|||.+.|+.|+|+|+|.+.|--|.+++..|||+++|+++++.||..||+..+...++.
T Consensus 20 ~~f~PY~~---------NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~ 90 (235)
T KOG0179|consen 20 ERFSPYED---------NGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKS 90 (235)
T ss_pred ccCCcccc---------CCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHH
Confidence 35666655 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCC-CeEEEEeCCCceeecCceEEcCChHHHHHHHH
Q 028162 117 KCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLD 195 (212)
Q Consensus 117 ~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D~~g-p~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le 195 (212)
..+.|+..+++.|++..+|++|++++|.+|.|||.+..+++|+|++| +.+|+.||.|++.+..+.|-|+++.+++++||
T Consensus 91 r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLD 170 (235)
T KOG0179|consen 91 RIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLD 170 (235)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999977 67999999999999999999999999999999
Q ss_pred ccC
Q 028162 196 SGC 198 (212)
Q Consensus 196 ~~y 198 (212)
+..
T Consensus 171 nQi 173 (235)
T KOG0179|consen 171 NQI 173 (235)
T ss_pred hhc
Confidence 854
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.96 E-value=3e-28 Score=190.92 Aligned_cols=155 Identities=32% Similarity=0.341 Sum_probs=146.4
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
+|+||++++||||+|+|++.+.+........+|++.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999998777688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC-CCceEEEEEEEEcCCCCeEEEEeCCCceeec-CceEEcCChHHHHHHHHccCcCc---hhHHHHHhc
Q 028162 136 KLLANILYSYRG-MGLSVGTMIAGWDETGPGLYYVDSEGGRLKG-TRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLN 210 (212)
Q Consensus 136 ~~ls~~l~~~r~-~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~-~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~ 210 (212)
+.+++.++.+|+ .|+.+++|++|+|+++|+||++||.|.+.+. .++++|+++..++++|++.|+++ ++++++++.
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALK 160 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999987 6899999999999988999999999999999 89999999999999999999985 777777654
No 45
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-28 Score=197.88 Aligned_cols=152 Identities=22% Similarity=0.280 Sum_probs=144.3
Q ss_pred eEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHH
Q 028162 57 TTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASK 136 (212)
Q Consensus 57 Tvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~ 136 (212)
|++||++.|+|++|+|+....+-++..++.+|++.|+++++|+++|..+|+..+.+++.+.+++|++++|.++|++++|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 79999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-c-CCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHH
Q 028162 137 LLANILYSY-R-GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLL 208 (212)
Q Consensus 137 ~ls~~l~~~-r-~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~ 208 (212)
++++.+.++ | ..||.|++++||+|+ .||.||++|..|+..+.++++.|.|+.++.++||+.|+|| +|+.+|.
T Consensus 83 FtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 83 FTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHH
Confidence 999999876 5 459999999999997 4799999999999999999999999999999999999999 6776664
No 46
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-27 Score=187.82 Aligned_cols=156 Identities=23% Similarity=0.247 Sum_probs=146.9
Q ss_pred CCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHH
Q 028162 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (212)
Q Consensus 53 ~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~ 132 (212)
.+|++++|++++++|.||+|.|........+.+.+|||+|.|+++++.+|++.|.|.+.++++...++|+++.++.|.++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 48999999999999999999999887888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEEEEcCC-CCeEEEEeCCCceeecC-ceEEcCChHHHHHHHHccCcCc---hhHHHH
Q 028162 133 GASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGT-RFSVGSGSPYAYGVLDSGCVSI---SHVFML 207 (212)
Q Consensus 133 ~la~~ls~~l~~~r~~p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~-~~aiGsgs~~a~~~Le~~y~~~---~~~~~~ 207 (212)
.++.++|+++|++|.-||.+..+|||+|++ .|+|..+|..|+...-+ +.++|.+++..++++|..|+|| ++||+.
T Consensus 86 ~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFet 165 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFET 165 (204)
T ss_pred HHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999999999985 49999999999997554 5578999999999999999999 788875
Q ss_pred H
Q 028162 208 L 208 (212)
Q Consensus 208 ~ 208 (212)
.
T Consensus 166 i 166 (204)
T KOG0180|consen 166 I 166 (204)
T ss_pred H
Confidence 3
No 47
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-27 Score=196.26 Aligned_cols=156 Identities=26% Similarity=0.357 Sum_probs=143.5
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhh-hhcCCcCCHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE-LANKRRISVT 132 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~-~~~~~~isv~ 132 (212)
+||++||+||+||||||+|+..++|++...++++||++|++++++++||..+|.|.+.+.+.......+ +..++.+.|+
T Consensus 40 TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk 119 (256)
T KOG0185|consen 40 TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPK 119 (256)
T ss_pred ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChH
Confidence 899999999999999999999999999999999999999999999999999999999999998877654 5567899999
Q ss_pred HHHHHHHHHHHhhcCC--CceEEEEEEEEcCCC-CeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc------hh
Q 028162 133 GASKLLANILYSYRGM--GLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI------SH 203 (212)
Q Consensus 133 ~la~~ls~~l~~~r~~--p~~v~~ivaG~D~~g-p~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~------~~ 203 (212)
.+.++|.+.+|.+|.. |+...++|||+|.+| |.|-++|..|..++.+..|+|.|.+.|.++|++.|+.. +|
T Consensus 120 ~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~ee 199 (256)
T KOG0185|consen 120 AIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREE 199 (256)
T ss_pred HHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHH
Confidence 9999999999999875 999999999999955 99999999999999999999999999999999999843 45
Q ss_pred HHHHHh
Q 028162 204 VFMLLL 209 (212)
Q Consensus 204 ~~~~~~ 209 (212)
+-+|++
T Consensus 200 A~~li~ 205 (256)
T KOG0185|consen 200 AEALIE 205 (256)
T ss_pred HHHHHH
Confidence 554544
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.5e-12 Score=100.32 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=113.4
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeec-CcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEIN-PYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~-~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~ 132 (212)
++||+++++-++-|+||.|.+.|.|+.+...+.+|+.+|. .+++.+++|.+||+..+.+.+..+++.|.-.--+ .+-
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--aav 80 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--AAV 80 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--HHH
Confidence 7999999999999999999999999999999999998885 5999999999999999999999999998622111 344
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeec--CceEEcCChHHHHHHHHccCcC-chhHHHHHh
Q 028162 133 GASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVLDSGCVS-ISHVFMLLL 209 (212)
Q Consensus 133 ~la~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~--~~~aiGsgs~~a~~~Le~~y~~-~~~~~~~~~ 209 (212)
++|+-.+.--+.+| +...++|+ |+ -.++-+...|..++- ...+||||..||++.-...++. +....++|+
T Consensus 81 elaKdwr~Dk~lr~---LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa~ 153 (178)
T COG5405 81 ELAKDWRTDKYLRK---LEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREIAE 153 (178)
T ss_pred HHHHhhhhhhHHHH---HhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHHHH
Confidence 56665554333333 33445665 54 358888888888754 3579999999999998888876 444444443
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.1e-08 Score=82.37 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=114.2
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeee----cCcEEEEecCChhHHHHHHHHHHHHHhhhhhh-cCCcCC
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI----NPYMLGTMAGGAADCQFWHRNLGIKCRLHELA-NKRRIS 130 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I----~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~-~~~~is 130 (212)
|-|||++-+.|.|+++|+|.+.|- -.....+|+|.. +.-++.+.+|..|-.|.+.+.+.+..+..... -.+..+
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGv-D~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGV-DYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCc-hHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 579999999999999999999863 233567887665 45677788999999999999998776532222 223456
Q ss_pred HHHHHHHHHHHHHhh--c--------CCCceEEEEEEEEcCCC-CeEEEEeCCCceeec----CceEEcCChHHHHHHHH
Q 028162 131 VTGASKLLANILYSY--R--------GMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKG----TRFSVGSGSPYAYGVLD 195 (212)
Q Consensus 131 v~~la~~ls~~l~~~--r--------~~p~~v~~ivaG~D~~g-p~Ly~vDp~G~~~~~----~~~aiGsgs~~a~~~Le 195 (212)
+-+++.++.....+- | ..-|.|++|++|.-..+ |.||.|-|.|++++. .++-+|. +.+-+++|+
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhh
Confidence 777888887776543 1 12489999999987755 779999999999864 3568898 568899999
Q ss_pred ccCcCc---hhHHHHH
Q 028162 196 SGCVSI---SHVFMLL 208 (212)
Q Consensus 196 ~~y~~~---~~~~~~~ 208 (212)
+.++-+ ++..+.|
T Consensus 160 R~i~~~~pLeea~kca 175 (255)
T COG3484 160 RTITYDTPLEEAAKCA 175 (255)
T ss_pred hhhhccCCHHHHhhhe
Confidence 999988 4444444
No 50
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=87.84 E-value=0.35 Score=26.26 Aligned_cols=13 Identities=23% Similarity=0.171 Sum_probs=10.5
Q ss_pred CCcchhhHH-HHhh
Q 028162 37 TDFDEFQKD-TKAT 49 (212)
Q Consensus 37 ~~~~~~q~e-a~~a 49 (212)
++.++||+| |.+|
T Consensus 10 p~Grl~QVEYA~~A 23 (23)
T PF10584_consen 10 PDGRLFQVEYAMKA 23 (23)
T ss_dssp TTSSBHHHHHHHHH
T ss_pred CCCeEEeeEeeecC
Confidence 466799999 8875
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=57.24 E-value=8.1 Score=31.97 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=36.1
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
+-+||..+++|.|+|.|+|.- ++-|.-.....+.+.| ..|+--+=++|.
T Consensus 2 SLII~y~GknGaViaGDkR~I----------------------~F~G~~~~re~LEeeL---------YsG~IktdeEL~ 50 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRNI----------------------AFRGDEEKREKLEEEL---------YSGKIKTDEELL 50 (194)
T ss_pred eEEEEEecCCCcEEeccceee----------------------eecCCHHHHHHHHHHH---------hCCccCCHHHHH
Confidence 468999999999999999852 4566666665555543 344444555666
Q ss_pred HHHHH
Q 028162 136 KLLAN 140 (212)
Q Consensus 136 ~~ls~ 140 (212)
+....
T Consensus 51 kkA~E 55 (194)
T PF09894_consen 51 KKAEE 55 (194)
T ss_pred HHHHH
Confidence 65544
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.68 E-value=83 Score=27.26 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=38.7
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
|-+|+..+++|.|+|.|+|.- ++-|.-.|-..+.+. +..|+--+-++|+
T Consensus 2 tLviay~gknGaviaGDrR~i----------------------~frgdee~re~lEek---------LYsGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRREI----------------------TFRGDEEDREKLEEK---------LYSGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceEE----------------------EEecChhHHHHHHHH---------hhcCccccHHHHH
Confidence 468999999999999999852 355666666555444 3456666677777
Q ss_pred HHHHHH
Q 028162 136 KLLANI 141 (212)
Q Consensus 136 ~~ls~~ 141 (212)
+....+
T Consensus 51 r~aeel 56 (293)
T COG4079 51 RKAEEL 56 (293)
T ss_pred HHHHHc
Confidence 776654
No 53
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=36.58 E-value=35 Score=25.34 Aligned_cols=17 Identities=53% Similarity=0.921 Sum_probs=14.6
Q ss_pred CCCeEEEEeCCCceeec
Q 028162 162 TGPGLYYVDSEGGRLKG 178 (212)
Q Consensus 162 ~gp~Ly~vDp~G~~~~~ 178 (212)
++|+|+++||.+...++
T Consensus 36 d~PrL~Yvdp~~~~~KG 52 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLKG 52 (104)
T ss_dssp TTTEEEEEETTTTEEEE
T ss_pred cCCEEEEEECCCCeECc
Confidence 57999999999987664
No 54
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=33.25 E-value=1.4e+02 Score=28.55 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCceEEEEEE-EEcCCCCeEEEEeCCCce
Q 028162 128 RISVTGASKLLANILYSYRGMGLSVGTMIA-GWDETGPGLYYVDSEGGR 175 (212)
Q Consensus 128 ~isv~~la~~ls~~l~~~r~~p~~v~~iva-G~D~~gp~Ly~vDp~G~~ 175 (212)
.++-+.+.+.|++.++..+ | ..+.+| +||++ |+-|.+-|.+..
T Consensus 312 NmSNd~AVrvLREaV~~~g--P--i~ltvAk~~DP~-~q~~fTipr~ep 355 (626)
T KOG3571|consen 312 NMSNDQAVRVLREAVSRPG--P--IKLTVAKCWDPN-PQSYFTIPRGEP 355 (626)
T ss_pred hcCchHHHHHHHHHhccCC--C--eEEEEeeccCCC-CcccccCCCCCc
Confidence 5666777888888877633 4 344555 89986 565555566643
No 55
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=31.67 E-value=77 Score=23.61 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhhhhhcCC-cCCHHHH
Q 028162 107 CQFWHRNLGIKCRLHELANKR-RISVTGA 134 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~-~isv~~l 134 (212)
|..+++.+..+++.|++.+++ ++|.+.|
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 556788899999999999988 6665544
No 56
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=24.94 E-value=2.1e+02 Score=23.09 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhcCC------C---c-eEEEEEEEEcCCCCeEEEEeCCCce
Q 028162 132 TGASKLLANILYSYRGM------G---L-SVGTMIAGWDETGPGLYYVDSEGGR 175 (212)
Q Consensus 132 ~~la~~ls~~l~~~r~~------p---~-~v~~ivaG~D~~gp~Ly~vDp~G~~ 175 (212)
.-.++.++++|.+|-+. | + +=..+|-|+|.+|-.|.+.||.+..
T Consensus 95 ~~t~e~~~~LL~~yGPLwv~~~~P~~~~~~H~~ViTGI~~dg~~i~~~DP~~gP 148 (166)
T PF12385_consen 95 SYTAEGLANLLREYGPLWVAWEAPGDSWVAHASVITGIDGDGDSIHVHDPEQGP 148 (166)
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCcceeeEEEEEeecCCCCeEEecCcccCC
Confidence 34566677777777431 2 1 1235778999888888888997754
No 57
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.76 E-value=57 Score=24.41 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=26.3
Q ss_pred eeeecCcEEEEecCChhHHHHHHHHHHHH---Hhhhhhh
Q 028162 89 IIEINPYMLGTMAGGAADCQFWHRNLGIK---CRLHELA 124 (212)
Q Consensus 89 I~~I~~~i~~~~sG~~aD~~~l~~~l~~~---~~~~~~~ 124 (212)
++.|.++.+..+.|..+|...+.+.++.. ++.|+..
T Consensus 10 ~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~~~A~~YRHY 48 (124)
T COG4728 10 IFKIKDKLGLTFVSKSADMSIQVEKAERLIKKASYYRHY 48 (124)
T ss_pred EEEEhhhcCcEEEEecchhHHHHHHHHHhhccchheEee
Confidence 67888999999999998888777766543 4444433
No 58
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.40 E-value=1.4e+02 Score=29.77 Aligned_cols=86 Identities=22% Similarity=0.245 Sum_probs=61.5
Q ss_pred CccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCC
Q 028162 85 SVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGP 164 (212)
Q Consensus 85 ~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D~~gp 164 (212)
..+.++.-.+..=..-+|-++-|-.++|.+.. ...|++|....+.++.+.++|...-.-|-|-.|+|.+=-+||
T Consensus 177 ~qk~mfdasefpD~~eAGRAaAc~sLcRIfcS------KksgEeIl~a~LS~FY~ll~Q~Lq~kdyvchpmLasl~ln~p 250 (1215)
T KOG3652|consen 177 SQKHMFDASEFPDGVEAGRAAACASLCRIFCS------KKSGEEILNAQLSNFYALLFQCLQEKDYVCHPMLASLFLNGP 250 (1215)
T ss_pred cccCCCchhhCCCchhhhHHHHHHHHHHhhhc------ccCcccccHHHHHHHHHHHHHHHhhcccccchhheeeeecCC
Confidence 34445666666656678888888877776643 346889999999999888887664444555556666655789
Q ss_pred eEEEEeCCCcee
Q 028162 165 GLYYVDSEGGRL 176 (212)
Q Consensus 165 ~Ly~vDp~G~~~ 176 (212)
-||..|-.|.-.
T Consensus 251 ~LFccdLkGId~ 262 (1215)
T KOG3652|consen 251 NLFCCDLKGIDS 262 (1215)
T ss_pred ceeeecCCchhH
Confidence 999999988653
No 59
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=23.76 E-value=1.2e+02 Score=20.28 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=19.4
Q ss_pred HHHHHHHhhhhhhcCCcCCHHHHHHHHH
Q 028162 112 RNLGIKCRLHELANKRRISVTGASKLLA 139 (212)
Q Consensus 112 ~~l~~~~~~~~~~~~~~isv~~la~~ls 139 (212)
+.+++..+......|+.++.+++|+.+.
T Consensus 4 ~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 4 RKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 4455555666777899999999999774
No 60
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=23.09 E-value=1.4e+02 Score=22.37 Aligned_cols=35 Identities=14% Similarity=-0.105 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHH
Q 028162 103 GAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141 (212)
Q Consensus 103 ~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~ 141 (212)
++.|--.+++.+| .|..+++..++++.+.+.+...
T Consensus 39 LT~~HW~VI~~lR----~~y~e~~~~P~~R~l~K~~~~~ 73 (109)
T PRK11508 39 LSPEHWEVVRFVR----DFYLEFNTSPAIRMLVKAMANK 73 (109)
T ss_pred CCHHHHHHHHHHH----HHHHHHCCCCcHHHHHHHHHHH
Confidence 3445556666664 4666788899999999987653
No 61
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=22.31 E-value=97 Score=24.56 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=25.8
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCc
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPY 95 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~ 95 (212)
.|-|++-|+|+||..|+..--.+.| -+--+|++.+++.
T Consensus 8 ~gktcllir~kdgafl~~~fistvg----id~rnkli~~~~~ 45 (192)
T KOG0083|consen 8 TGKTCLLIRFKDGAFLAGNFISTVG----IDFRNKLIDMDDK 45 (192)
T ss_pred cCceEEEEEeccCceecCceeeeee----eccccceeccCCc
Confidence 6889999999999998854433332 2334666666553
No 62
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.56 E-value=64 Score=23.40 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=12.9
Q ss_pred CCCeEEEEeCCCceee
Q 028162 162 TGPGLYYVDSEGGRLK 177 (212)
Q Consensus 162 ~gp~Ly~vDp~G~~~~ 177 (212)
++|+|+++||.-...+
T Consensus 24 d~PrL~yvdp~~~~~K 39 (89)
T cd01262 24 NGPRLIYVDPVKKVVK 39 (89)
T ss_pred cCceEEEEcCCcCeEE
Confidence 5899999999865554
No 63
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=21.36 E-value=4.5e+02 Score=21.39 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=35.6
Q ss_pred hcCCcCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCchh
Q 028162 124 ANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSISH 203 (212)
Q Consensus 124 ~~~~~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~~~ 203 (212)
..+.+++-..+|+.|++++.. -+|-++..|..+.+.. ..+.....+..+++...=|.+.
T Consensus 16 ~~~~~v~F~~ia~vL~dvl~a--------------------NvyIis~kGkiLGy~~-~~~~~~~~~~~~~~~~~fpe~y 74 (177)
T PF06018_consen 16 SAGEPVDFNDIAEVLSDVLEA--------------------NVYIISRKGKILGYSF-IDDFECDRMEEMLEEKRFPEEY 74 (177)
T ss_dssp HTTSS--HHHHHHHHHHHHTS--------------------EEEEEETTSBEEEEE--SS----HHHHHHHHHTB--HHH
T ss_pred cCCCCCCHHHHHHHHHHhhcC--------------------cEEEEeCCccEEEEec-cCCCCcHHHHHHHhcCcCCHHH
Confidence 367899999999999997764 2566666676665532 2344455566677766656544
Q ss_pred HHHH
Q 028162 204 VFML 207 (212)
Q Consensus 204 ~~~~ 207 (212)
.-+|
T Consensus 75 n~~l 78 (177)
T PF06018_consen 75 NERL 78 (177)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 64
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]
Probab=20.82 E-value=2.3e+02 Score=22.54 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcCCcCCH--HHHHHHHHHHHHhhcCCCc-eEEEEEEEEcCC---CCeEEEEeCCCceee
Q 028162 104 AADCQFWHRNLGIKCRLHELANKRRISV--TGASKLLANILYSYRGMGL-SVGTMIAGWDET---GPGLYYVDSEGGRLK 177 (212)
Q Consensus 104 ~aD~~~l~~~l~~~~~~~~~~~~~~isv--~~la~~ls~~l~~~r~~p~-~v~~ivaG~D~~---gp~Ly~vDp~G~~~~ 177 (212)
.+|++.|...+...++.++..-++.+.. .+.+..|.++++. ..|+ ++..-+-||.+. ||.+..+-|.=+++.
T Consensus 5 vg~aksW~~~lve~ak~l~v~~g~kp~tD~~a~~~ri~~liqS--~~~~~~r~~yl~~ya~~~f~~~tiLsvtP~ms~yk 82 (157)
T KOG2449|consen 5 VGAAKSWHPTLVEDAKVLKVNAGEKPQTDKYAPKVRIDKLIQS--EDPLDGRFIYLPGYAEGNFVGPTILSVTPNMSCYK 82 (157)
T ss_pred echhhhhhHHHHHhhhheEeccCCCCCccchhHHHHHHHHhcC--cCccCCceEEeeccccCCcccceEEEecCCcceeH
Confidence 4689999999999999999988887654 4556677777776 2332 334456677653 677777888777765
Q ss_pred cCce
Q 028162 178 GTRF 181 (212)
Q Consensus 178 ~~~~ 181 (212)
...+
T Consensus 83 eeI~ 86 (157)
T KOG2449|consen 83 EEIF 86 (157)
T ss_pred hhhh
Confidence 5443
Done!