Query 028162
Match_columns 212
No_of_seqs 189 out of 1341
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_B 20S proteasome; cell cy 100.0 1.2E-43 4E-48 298.6 21.7 181 28-211 4-193 (233)
2 1yar_A Proteasome alpha subuni 100.0 1.5E-43 5E-48 297.9 22.1 181 28-211 7-196 (233)
3 1ryp_D 20S proteasome; multica 100.0 1.9E-43 6.4E-48 298.8 22.3 173 37-211 11-196 (241)
4 1ryp_A 20S proteasome; multica 100.0 9.7E-44 3.3E-48 300.9 19.2 171 38-211 13-200 (243)
5 1iru_G 20S proteasome; cell cy 100.0 2.5E-43 8.7E-48 300.5 21.3 182 27-211 5-196 (254)
6 1ryp_C 20S proteasome; multica 100.0 3.5E-43 1.2E-47 297.5 21.6 181 29-211 5-195 (244)
7 1iru_D 20S proteasome; cell cy 100.0 3.5E-43 1.2E-47 298.6 20.9 180 29-211 3-194 (248)
8 3h4p_A Proteasome subunit alph 100.0 7.8E-44 2.7E-48 305.5 16.7 181 28-211 11-200 (264)
9 1iru_C 20S proteasome; cell cy 100.0 4.8E-43 1.6E-47 299.8 21.5 183 27-211 3-196 (261)
10 1iru_E 20S proteasome; cell cy 100.0 3.1E-43 1E-47 297.5 19.9 181 28-211 7-201 (241)
11 3nzj_F Proteasome component C1 100.0 5.5E-43 1.9E-47 303.7 21.3 182 27-211 6-199 (288)
12 1j2p_A Alpha-ring, proteasome 100.0 1E-42 3.4E-47 295.3 22.1 180 28-211 7-195 (246)
13 3nzj_K Proteasome component PR 100.0 4.1E-43 1.4E-47 304.3 19.6 182 28-211 41-235 (287)
14 1ryp_G 20S proteasome; multica 100.0 1E-42 3.5E-47 295.1 21.6 181 28-211 3-195 (244)
15 1iru_A 20S proteasome; cell cy 100.0 6.7E-43 2.3E-47 296.2 20.0 181 28-211 8-201 (246)
16 1ryp_E 20S proteasome; multica 100.0 4.9E-43 1.7E-47 296.3 18.4 171 38-211 10-195 (242)
17 1ryp_B 20S proteasome; multica 100.0 5.1E-42 1.7E-46 291.6 21.9 182 27-211 3-195 (250)
18 1ryp_F 20S proteasome; multica 100.0 3E-42 1E-46 290.1 19.7 168 38-210 15-194 (233)
19 1iru_F 20S proteasome; cell cy 100.0 5.2E-42 1.8E-46 293.9 19.3 179 28-211 5-194 (263)
20 1yar_H Proteasome beta subunit 100.0 7.4E-41 2.5E-45 279.0 19.7 157 54-211 7-166 (217)
21 1iru_L 20S proteasome; cell cy 100.0 1.2E-40 4E-45 274.7 20.0 156 56-211 1-159 (204)
22 3h4p_a Proteasome subunit beta 100.0 1.4E-40 4.6E-45 277.8 18.1 157 55-211 1-162 (219)
23 1j2q_H Proteasome beta subunit 100.0 3.4E-40 1.2E-44 271.6 19.5 156 56-211 1-160 (202)
24 1ryp_H 20S proteasome; multica 100.0 4E-40 1.4E-44 271.9 18.3 161 47-211 3-167 (205)
25 3nzj_H Proteasome component PU 100.0 6.4E-40 2.2E-44 280.9 19.5 163 46-211 22-187 (261)
26 1iru_N 20S proteasome; cell cy 100.0 2.1E-40 7E-45 276.2 15.3 162 48-211 3-172 (219)
27 1ryp_L 20S proteasome; multica 100.0 9.7E-40 3.3E-44 270.9 19.3 156 56-211 1-160 (212)
28 1iru_M 20S proteasome; cell cy 100.0 1.6E-39 5.5E-44 269.6 20.6 158 54-211 8-178 (213)
29 1q5q_A Proteasome alpha-type s 100.0 1.4E-39 4.6E-44 278.4 20.5 171 31-211 1-187 (259)
30 3mi0_A Proteasome subunit alph 100.0 2.8E-39 9.7E-44 275.0 20.3 171 31-211 1-187 (248)
31 1ryp_M 20S proteasome; multica 100.0 3.2E-39 1.1E-43 269.9 19.7 158 54-211 8-187 (222)
32 1iru_H 20S proteasome; cell cy 100.0 2.3E-39 7.8E-44 267.2 18.3 155 56-211 1-159 (205)
33 1iru_J 20S proteasome; cell cy 100.0 2.9E-39 1E-43 266.6 18.9 159 53-211 6-170 (205)
34 1ryp_N 20S proteasome; multica 100.0 1.4E-39 4.9E-44 273.7 16.5 162 48-211 3-180 (233)
35 3unf_H Proteasome subunit beta 100.0 6.5E-39 2.2E-43 270.6 19.2 155 56-211 1-158 (234)
36 1ryp_J 20S proteasome; multica 100.0 1.2E-38 3.9E-43 262.8 20.0 157 54-211 7-169 (204)
37 1ryp_K 20S proteasome; multica 100.0 7E-39 2.4E-43 262.8 18.0 156 56-211 2-164 (198)
38 1q5r_H Proteasome beta-type su 100.0 7.3E-39 2.5E-43 278.5 18.2 164 46-211 58-235 (294)
39 1ryp_I 20S proteasome; multica 100.0 3.5E-38 1.2E-42 263.8 19.3 155 56-211 1-158 (222)
40 1g0u_M Proteasome component PR 100.0 8.1E-39 2.8E-43 274.5 15.0 164 46-211 34-213 (266)
41 1iru_I 20S proteasome; cell cy 100.0 9.8E-38 3.3E-42 263.1 20.2 155 56-211 1-158 (234)
42 1iru_K 20S proteasome; cell cy 100.0 5E-38 1.7E-42 258.4 17.5 156 56-211 2-163 (201)
43 1q5q_H Proteasome beta-type su 100.0 5.8E-38 2E-42 264.5 17.6 156 56-211 1-170 (235)
44 2jay_A Proteasome; hydrolase; 100.0 9.2E-38 3.1E-42 271.2 17.1 163 46-211 51-227 (291)
45 3unf_N Proteasome subunit beta 100.0 2.1E-37 7E-42 254.3 16.5 153 56-211 1-158 (199)
46 1g3k_A ATP-dependent protease 100.0 3.1E-33 1.1E-37 225.4 15.7 147 56-211 1-152 (174)
47 1m4y_A ATP-dependent protease 100.0 4.2E-33 1.4E-37 223.9 16.0 146 56-211 1-151 (171)
48 2z3b_A ATP-dependent protease 100.0 1.7E-32 6E-37 222.5 15.8 147 53-209 3-157 (180)
49 1yx3_A Hypothetical protein DS 21.6 1E+02 0.0035 22.9 4.0 36 103-142 62-97 (132)
No 1
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.2e-43 Score=298.55 Aligned_cols=181 Identities=18% Similarity=0.205 Sum_probs=166.8
Q ss_pred CCCcCCCC-CCCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChh
Q 028162 28 APSFSLPL-STDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (212)
Q Consensus 28 ~~~~~~p~-~~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 105 (212)
.+..+++. .++.++||+| |.++++ +|+|+|||+++||||||+|+|.+ ++++.+++.+||++|+++|++++||..+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 80 (233)
T 1iru_B 4 GYSFSLTTFSPSGKLVQIEYALAAVA--GGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGP 80 (233)
T ss_dssp CCCSBSCCCCTTSCCHHHHHHHHHHH--TSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHH
T ss_pred CccCCceeECCCCeEehhHhHHHHHH--cCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccH
Confidence 34455544 2355699999 999999 99999999999999999999999 5899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCce
Q 028162 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
|++.+.++++.+++.|+++++++++++.+|+++++++|.|++ +||++++||||||++||+||++||+|++.+++++
T Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~ 160 (233)
T 1iru_B 81 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKAT 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999998865 4999999999999889999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
|+|+|+.+++++||+.|+++ +|++++++.+
T Consensus 161 aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~a 193 (233)
T 1iru_B 161 AMGKNYVNGKTFLEKRYNEDLELEDAIHTAILT 193 (233)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999999999999999988 7788888753
No 2
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.5e-43 Score=297.95 Aligned_cols=181 Identities=23% Similarity=0.331 Sum_probs=163.5
Q ss_pred CCCcCCCC-CCCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChh
Q 028162 28 APSFSLPL-STDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (212)
Q Consensus 28 ~~~~~~p~-~~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 105 (212)
.+..+++. .++.++||+| |.++++ +|||+|||+++||||||+|+|.+.+ ++.+++.+||++|+++|++++||..+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~a 83 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQVEYAREAVK--KGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVA 83 (233)
T ss_dssp ------CCCCTTSCCHHHHHHHHHHT--TSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHH
T ss_pred cCCCCCceECcCCeeHHHHhHHHHHh--cCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHH
Confidence 34555544 2245599999 999999 9999999999999999999999995 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCce
Q 028162 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
|++.+.++++.+++.|+++++++++++.+|+++++++|.|++ .||++++||||||++||+||++||+|++.+++++
T Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~ 163 (233)
T 1yar_A 84 DARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKAT 163 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeEE
Confidence 999999999999999999999999999999999999998875 4999999999999989999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
|+|+|+.+++++||+.|+++ +|++++++.+
T Consensus 164 aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~a 196 (233)
T 1yar_A 164 AIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 196 (233)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999999999999999998 7788887753
No 3
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.9e-43 Score=298.81 Aligned_cols=173 Identities=19% Similarity=0.267 Sum_probs=163.4
Q ss_pred CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 37 TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 37 ~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
++.++||+| |.+|++ +|||+|||+++||||||+|+|.+.|.++.+++++||++|+++|++++||+.+|++.+.++++
T Consensus 11 p~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~ 88 (241)
T 1ryp_D 11 PDGHIFQVEYALEAVK--RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKAR 88 (241)
T ss_dssp TTTBCHHHHHHHHHHT--TSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHH--cCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHH
Confidence 356799999 999999 99999999999999999999999988888779999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCC----CceEEEEEEEEcC--CCCeEEEEeCCCceeecCceEEcCChHH
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSYRGM----GLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGTRFSVGSGSPY 189 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~----p~~v~~ivaG~D~--~gp~Ly~vDp~G~~~~~~~~aiGsgs~~ 189 (212)
.+++.|+++++++++++.+|+++++++|.|+++ ||++++||||||+ +||+||++||+|++.++++.|+|+|+.+
T Consensus 89 ~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~ 168 (241)
T 1ryp_D 89 VEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKT 168 (241)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHH
Confidence 999999999999999999999999999998643 9999999999998 7899999999999999999999999999
Q ss_pred HHHHHHccC---cCc---hhHHHHHhcc
Q 028162 190 AYGVLDSGC---VSI---SHVFMLLLNG 211 (212)
Q Consensus 190 a~~~Le~~y---~~~---~~~~~~~~~~ 211 (212)
++++||+.| +++ +|+++|++.+
T Consensus 169 a~~~Le~~~~~~~~~ms~eea~~l~~~a 196 (241)
T 1ryp_D 169 VREFLEKNYDRKEPPATVEECVKLTVRS 196 (241)
T ss_dssp HHHHHHTTCCTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCCCCHHHHHHHHHHH
Confidence 999999999 887 7888888754
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=9.7e-44 Score=300.89 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=161.2
Q ss_pred CcchhhHH-HHhhcccCC-CceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHH
Q 028162 38 DFDEFQKD-TKATLKHAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (212)
Q Consensus 38 ~~~~~q~e-a~~ai~~~~-GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~ 115 (212)
+.++||+| |.+||+ + |+|+|||+++||||||+|+|.+ +.++.+++++||++|+++|+|++||+.+|++.+.++++
T Consensus 13 ~Grl~QvEYA~~av~--~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r 89 (243)
T 1ryp_A 13 EGRLYQVEYAFKATN--QTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAK 89 (243)
T ss_dssp TSCCHHHHHHHHHTT--TTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHH
T ss_pred CCeeHHHHHHHHHHh--cCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHH
Confidence 55699999 999999 9 9999999999999999999999 79999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcCCHHHHHHHHHHHHHhh--c--CCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHH
Q 028162 116 IKCRLHELANKRRISVTGASKLLANILYSY--R--GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYA 190 (212)
Q Consensus 116 ~~~~~~~~~~~~~isv~~la~~ls~~l~~~--r--~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a 190 (212)
.+++.|+++++++++++.+|+++++++|.| | .+||+|++||||||+ +||+||++||+|++.+++++|+|+|++++
T Consensus 90 ~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a 169 (243)
T 1ryp_A 90 AEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEI 169 (243)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHH
Confidence 999999999999999999999999999554 4 359999999999997 78999999999999999999999999999
Q ss_pred HHHHHccCcC-------c---hhHHHHHhcc
Q 028162 191 YGVLDSGCVS-------I---SHVFMLLLNG 211 (212)
Q Consensus 191 ~~~Le~~y~~-------~---~~~~~~~~~~ 211 (212)
+++||+.|++ + +|+++|++.+
T Consensus 170 ~~~Le~~~~~~~~~~~~~ms~eea~~l~~~a 200 (243)
T 1ryp_A 170 TTNLENHFKKSKIDHINEESWEKVVEFAITH 200 (243)
T ss_dssp HHHHHHHHHHHCSSSCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccCCCHHHHHHHHHHH
Confidence 9999999998 6 7888888754
No 5
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.5e-43 Score=300.48 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=166.7
Q ss_pred CCCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCCh
Q 028162 27 AAPSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (212)
Q Consensus 27 ~~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~ 104 (212)
+.+.++++.+ ++.++||+| |.++|+ +|+|+|||+++||||||+|+|.+.|.++. ++++||++|+++|+|++||+.
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~ 81 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAMKAVE--NSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLL 81 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECH
T ss_pred cccCCCCccCCcCCccHHHHhHHHHHh--cCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecCh
Confidence 4456665542 245699999 999999 99999999999999999999999987774 899999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEc-CCCCeEEEEeCCCceeecC
Q 028162 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGT 179 (212)
Q Consensus 105 aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D-~~gp~Ly~vDp~G~~~~~~ 179 (212)
+|++.+.++++.+++.|+++++++++++.+|+++++++|.||+ +||+|++|||||| ++||+||++||+|++.+++
T Consensus 82 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 161 (254)
T 1iru_G 82 ADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYW 161 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeee
Confidence 9999999999999999999999999999999999999999874 5999999999999 6789999999999999999
Q ss_pred ceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 180 RFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 180 ~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
++|+|+|+.+++++||+.|+++ +|++++++.+
T Consensus 162 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~a 196 (254)
T 1iru_G 162 GCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKI 196 (254)
T ss_dssp EEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred eEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 9999999999999999999987 7888877653
No 6
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=3.5e-43 Score=297.47 Aligned_cols=181 Identities=19% Similarity=0.217 Sum_probs=165.6
Q ss_pred CCcCCCC-CCCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhH
Q 028162 29 PSFSLPL-STDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (212)
Q Consensus 29 ~~~~~p~-~~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 106 (212)
+.++++. .++.++||+| |.++++ +|||+|||+++||||||+|+|.+.|.++.+++++||++|+++|++++||+.+|
T Consensus 5 yd~~~t~fsp~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 5 YDSRTTIFSPEGRLYQVEYALESIS--HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GCCCTTCBCTTSCBHHHHHHHHHHT--TSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred cCCCCceECcCCeeHHHHhHHHHHh--cCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 4444444 2245599999 999999 99999999999999999999999987766899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----CCCceEEEEEEEEc-CCCCeEEEEeCCCceeecCce
Q 028162 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r----~~p~~v~~ivaG~D-~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
++.+.++++.+++.|+++++++++++.+|+++++++|.|+ ..||++++|||||| ++||+||++||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 9999999999999999999999999999999999998874 34999999999999 678999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
|+|+|+.+++++||+.|+++ +|++++++.+
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~a 195 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMDYKDDMKVDDAIELALKT 195 (244)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 99999999999999999998 7888888753
No 7
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.5e-43 Score=298.57 Aligned_cols=180 Identities=19% Similarity=0.325 Sum_probs=165.0
Q ss_pred CCcCCCC-CCCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhH
Q 028162 29 PSFSLPL-STDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (212)
Q Consensus 29 ~~~~~p~-~~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 106 (212)
+.++++. .++.++||+| |.++++ +|||+|||+++||||||+|+|.+.| ++..++++||++|+++|++++||+.+|
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD 79 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVK--KGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTAD 79 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHH--TSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHH--cCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHH
Confidence 4444444 2345699999 999999 9999999999999999999999996 788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCC----CceEEEEEEEEc-CCCCeEEEEeCCCceeecCce
Q 028162 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGM----GLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~----p~~v~~ivaG~D-~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
++.+.++++.+++.|+++++++++++.+|+++++++|.|++. ||+|++|||||| ++||+||++||+|++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 159 (248)
T 1iru_D 80 ARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKAN 159 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEE
Confidence 999999999999999999999999999999999999998653 999999999999 678999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcCch-----hHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSGCVSIS-----HVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~~~-----~~~~~~~~~ 211 (212)
|+|+|+.+++++||+.|++++ |+++|++.+
T Consensus 160 aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~a 194 (248)
T 1iru_D 160 AIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKA 194 (248)
T ss_dssp EESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHH
Confidence 999999999999999999876 777777653
No 8
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.8e-44 Score=305.54 Aligned_cols=181 Identities=21% Similarity=0.342 Sum_probs=164.8
Q ss_pred CCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChh
Q 028162 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (212)
Q Consensus 28 ~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 105 (212)
.+.++++.+ ++.++||+| |.+||+ +|+|+|||+++||||||+|+|.+.+ ++.+++++||++|+++|+|++||+.+
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA~~av~--~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~a 87 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYAREAVR--RGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVA 87 (264)
T ss_dssp -----CCCCCSSSSCHHHHHHHHHHH--HSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSH
T ss_pred ccCCCcceECCCCeeHHHHhHHHHHh--cCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchH
Confidence 455565552 355599999 999999 9999999999999999999999985 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCce
Q 028162 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
|++.+.++++.+++.|+++++++++++.+|++|++++|.|++ +||+|++||||||++||+||++||+|++.+++++
T Consensus 88 D~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~ 167 (264)
T 3h4p_A 88 DARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKAT 167 (264)
T ss_dssp HHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEE
T ss_pred HHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeE
Confidence 999999999999999999999999999999999999998864 4999999999999989999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
|+|+|+.+++++||+.|+++ +++++|++.+
T Consensus 168 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~a 200 (264)
T 3h4p_A 168 AIGSGRPVVMELLEKEYRDDITLDEGLELAITA 200 (264)
T ss_dssp EESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 99999999999999999998 7888888754
No 9
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=4.8e-43 Score=299.84 Aligned_cols=183 Identities=20% Similarity=0.223 Sum_probs=168.3
Q ss_pred CCCCcCCCC-CCCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCCh
Q 028162 27 AAPSFSLPL-STDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (212)
Q Consensus 27 ~~~~~~~p~-~~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~ 104 (212)
..+.++++. +++.++||+| |.++++ +|||+|||+++||||||+|+|.+.|.++.+++++||++|+++|++++||+.
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~--~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~ 80 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIG--HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGIT 80 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHT--TSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHh--cCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcH
Confidence 355666654 2245599999 999999 999999999999999999999999988888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCeEEEEeCCCceeecC
Q 028162 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGT 179 (212)
Q Consensus 105 aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~ 179 (212)
+|++.+.++++.+++.|+++++++++++.+|+++++++|.||+ .||+|++||||||+ +||+||++||+|++.+++
T Consensus 81 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (261)
T 1iru_C 81 SDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWK 160 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeee
Confidence 9999999999999999999999999999999999999999874 49999999999995 689999999999999999
Q ss_pred ceEEcCChHHHHHHHHccCcC-c---hhHHHHHhcc
Q 028162 180 RFSVGSGSPYAYGVLDSGCVS-I---SHVFMLLLNG 211 (212)
Q Consensus 180 ~~aiGsgs~~a~~~Le~~y~~-~---~~~~~~~~~~ 211 (212)
++|+|+|+.+++++||+.|++ + +|++++++.+
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~a 196 (261)
T 1iru_C 161 ATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKV 196 (261)
T ss_dssp EEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHH
T ss_pred eEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 999999999999999999999 7 7788888753
No 10
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3.1e-43 Score=297.50 Aligned_cols=181 Identities=20% Similarity=0.241 Sum_probs=165.4
Q ss_pred CCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChh
Q 028162 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (212)
Q Consensus 28 ~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 105 (212)
.+..++..+ ++.++||+| |.++++ +|||+|||+++||||||+|+|.+.|.++ +++.+||++|+++|++++||..+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~a 83 (241)
T 1iru_E 7 EYDRGVNTFSPEGRLFQVEYDIEAIK--LGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIA 83 (241)
T ss_dssp -CCCCTTCBCTTSCBHHHHHHHHHHT--TSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHH
T ss_pred CCCCCCceECCCCccHHHHHHHHHHH--cCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChH
Confidence 455555542 245599999 999999 9999999999999999999999998776 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC---------CCceEEEEEEEEcCCCCeEEEEeCCCcee
Q 028162 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG---------MGLSVGTMIAGWDETGPGLYYVDSEGGRL 176 (212)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~---------~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~ 176 (212)
|++.+.++++.+++.|+++++++++++.+|+++++++|.|++ .||++++||||||++||+||++||+|++.
T Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~ 163 (241)
T 1iru_E 84 DAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFV 163 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcEE
Confidence 999999999999999999999999999999999999987743 39999999999998889999999999999
Q ss_pred ecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 177 KGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 177 ~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++|+|+|+.+++++||+.|+++ +|++++++.+
T Consensus 164 ~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~a 201 (241)
T 1iru_E 164 QCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLII 201 (241)
T ss_dssp EBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred ecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999999999999999999999998 7778888753
No 11
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=5.5e-43 Score=303.67 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=167.5
Q ss_pred CCCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCCh
Q 028162 27 AAPSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (212)
Q Consensus 27 ~~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~ 104 (212)
..+.++++.+ ++.++||+| |.+||+ +|+|+|||+++||||||+|+|.+.|.++.+ +++||++|+++|+|++||+.
T Consensus 6 ~~yd~~~t~fSP~Grl~QvEYA~kAv~--~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~ 82 (288)
T 3nzj_F 6 TGYDLSNSVFSPDGRNFQVEYAVKAVE--NGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLI 82 (288)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECH
T ss_pred CCccCCcccCCCCCchHHHHHHHHHHh--cCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcH
Confidence 3466666653 356699999 999999 999999999999999999999999876654 78999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCc
Q 028162 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTR 180 (212)
Q Consensus 105 aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~ 180 (212)
+|++.|.++++.+++.|++++++++++..+|+++++++|.|++ +||+|++||||||++||+||++||+|++.++++
T Consensus 83 aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~ 162 (288)
T 3nzj_F 83 PDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKG 162 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCE
Confidence 9999999999999999999999999999999999999999865 499999999999999999999999999999999
Q ss_pred eEEcCChHHHHHHHHcc---CcCc---hhHHHHHhcc
Q 028162 181 FSVGSGSPYAYGVLDSG---CVSI---SHVFMLLLNG 211 (212)
Q Consensus 181 ~aiGsgs~~a~~~Le~~---y~~~---~~~~~~~~~~ 211 (212)
+|+|+|+++++++||+. |+++ +|+++|++.+
T Consensus 163 ~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~a 199 (288)
T 3nzj_F 163 AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKI 199 (288)
T ss_dssp EEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred EEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHH
Confidence 99999999999999999 9998 7888888754
No 12
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1e-42 Score=295.28 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=165.4
Q ss_pred CCCcCCCC-CCCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChh
Q 028162 28 APSFSLPL-STDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (212)
Q Consensus 28 ~~~~~~p~-~~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 105 (212)
.+..+++. +++.++||+| |.++++ +|||+|||+++||||||+|+|.+.+ ++.+++.+||++|+++|++++||..+
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~a 83 (246)
T 1j2p_A 7 GYDRAITVFSPDGRLFQVEYAREAVK--RGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVA 83 (246)
T ss_dssp TSSSCTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHH
T ss_pred CcCCCCceECCCCeehHHHhHHHHHH--cCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccH
Confidence 45666654 2245599999 999999 9999999999999999999999984 66688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCC----CceEEEEEEEEcCCCCeEEEEeCCCceeecCce
Q 028162 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGM----GLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~----p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
|++.+.++++.+++.|+++++++++|+.+|+++++++|.|++. ||++++|||||| +||+||++||+|++.+++++
T Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~ 162 (246)
T 1j2p_A 84 DARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKAT 162 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEE
Confidence 9999999999999999999999999999999999999988643 999999999999 89999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
|+|+|+.+++++||+.|+++ +|++++++.+
T Consensus 163 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~a 195 (246)
T 1j2p_A 163 AIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVA 195 (246)
T ss_dssp EESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999999999999999998 7788888753
No 13
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=4.1e-43 Score=304.30 Aligned_cols=182 Identities=55% Similarity=0.944 Sum_probs=151.3
Q ss_pred CCCcCCCCCCCcchhhHH---------HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEE
Q 028162 28 APSFSLPLSTDFDEFQKD---------TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLG 98 (212)
Q Consensus 28 ~~~~~~p~~~~~~~~q~e---------a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~ 98 (212)
++.|.+|+..+|..|..+ +..+|+ +|||+|||+++||||||+|+|.+.|.++.+++++||++|+++|++
T Consensus 41 ~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~v~--~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~ 118 (287)
T 3nzj_K 41 APSLTVPPIASPQQFLRAHTDDSRNPDCKIKIA--HGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLG 118 (287)
T ss_dssp -------------------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEE
T ss_pred CcccccCCCCCHHHHHHHhcccccccchhhhec--cCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEE
Confidence 678999999999988776 244666 999999999999999999999999999999999999999999999
Q ss_pred EecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEc-CCCCeEEEEeCCCceee
Q 028162 99 TMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLK 177 (212)
Q Consensus 99 ~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D-~~gp~Ly~vDp~G~~~~ 177 (212)
++||..+|++.|.++++.+++.|+++++++++++.+++++++++|.||++|+++++|||||| ++||+||++||+|++.+
T Consensus 119 ~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~ 198 (287)
T 3nzj_K 119 TMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLK 198 (287)
T ss_dssp ECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEE
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 57899999999999999
Q ss_pred cCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 178 GTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 178 ~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
++++|+|+|+.+++++||+.|+++ +|+++|++.+
T Consensus 199 ~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~a 235 (287)
T 3nzj_K 199 GDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS 235 (287)
T ss_dssp CSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHH
T ss_pred cCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999998 7888888754
No 14
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1e-42 Score=295.11 Aligned_cols=181 Identities=16% Similarity=0.141 Sum_probs=165.0
Q ss_pred CCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChh
Q 028162 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (212)
Q Consensus 28 ~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 105 (212)
.+.++++.+ ++.++||+| |.++++ +|||+|||+++||||||+|+|.+.|.++.++ .+||++|+++|++++||+.+
T Consensus 3 ~yd~~~t~fsp~Grl~QvEya~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~a 79 (244)
T 1ryp_G 3 GYDLSNSVFSPDGRNFQVEYAVKAVE--NGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIP 79 (244)
T ss_dssp CTTSSTTCCCTTSCCHHHHHHHHHHH--TSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHH
T ss_pred CccCCcccCCcCCchHHHHhHHHHHH--CCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHH
Confidence 355555552 355699999 999999 9999999999999999999999998777654 59999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCeEEEEeCCCceeecCce
Q 028162 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
|++.+.++++.+++.|++++++++++..+|+++++++|.|++ .||++++||||||++||+||++||+|++.+++++
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ 159 (244)
T 1ryp_G 80 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGA 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999998843 5999999999999989999999999999999999
Q ss_pred EEcCChHHHHHHHHcc---CcCc---hhHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSG---CVSI---SHVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~---y~~~---~~~~~~~~~~ 211 (212)
|+|+|+.+++++||+. |+++ +|++++++.+
T Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~a 195 (244)
T 1ryp_G 160 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKI 195 (244)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHH
Confidence 9999999999999997 9997 7888887653
No 15
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=6.7e-43 Score=296.23 Aligned_cols=181 Identities=17% Similarity=0.173 Sum_probs=165.8
Q ss_pred CCCcCCCC-CCCcchhhHH-HHhhcccCC-CceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCCh
Q 028162 28 APSFSLPL-STDFDEFQKD-TKATLKHAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (212)
Q Consensus 28 ~~~~~~p~-~~~~~~~q~e-a~~ai~~~~-GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~ 104 (212)
.+..+++. .++.++||+| |.++|+ + |+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++|++++||+.
T Consensus 8 ~yd~~~t~fsp~Grl~QvEya~~av~--~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~ 84 (246)
T 1iru_A 8 GFDRHITIFSPEGRLYQVEYAFKAIN--QGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMT 84 (246)
T ss_dssp TTTTTSSCCCTTSCCHHHHHHHHHHH--TTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECH
T ss_pred CcCCCCccCCCCCeehHHHHHHHHHh--cCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccH
Confidence 45555554 2345699999 999999 8 9999999999999999999999 689999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----CCCceEEEEEEEEcC-CCCeEEEEeCCCceeecC
Q 028162 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGT 179 (212)
Q Consensus 105 aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r----~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~ 179 (212)
+|++.+.++++.+++.|+++++++++++.+|+++++++|.|+ .+||+|++||||||+ +||+||++||+|++.+++
T Consensus 85 aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 164 (246)
T 1iru_A 85 ADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFK 164 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEee
Confidence 999999999999999999999999999999999999987664 359999999999997 789999999999999999
Q ss_pred ceEEcCChHHHHHHHHccCcC--c---hhHHHHHhcc
Q 028162 180 RFSVGSGSPYAYGVLDSGCVS--I---SHVFMLLLNG 211 (212)
Q Consensus 180 ~~aiGsgs~~a~~~Le~~y~~--~---~~~~~~~~~~ 211 (212)
++|+|+|+.+++++||+.|++ + +|+++|++.+
T Consensus 165 ~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~a 201 (246)
T 1iru_A 165 ATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITC 201 (246)
T ss_dssp EEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHH
T ss_pred EEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHH
Confidence 999999999999999999999 6 7888887754
No 16
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=4.9e-43 Score=296.26 Aligned_cols=171 Identities=25% Similarity=0.303 Sum_probs=160.7
Q ss_pred CcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHH
Q 028162 38 DFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGI 116 (212)
Q Consensus 38 ~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~ 116 (212)
+.++||+| |.++++ +|||+|||+++||||||+|+|.+.|.++ +++.+||++|+++|++++||+.+|++.+.++++.
T Consensus 10 ~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~ 86 (242)
T 1ryp_E 10 EGRLFQVEYSLEAIK--LGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHART 86 (242)
T ss_dssp TSCBHHHHHHHHHHT--TSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHH
T ss_pred CCcChHHHhHHHHHH--cCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHH
Confidence 55699999 999999 9999999999999999999999998766 8899999999999999999999999999999999
Q ss_pred HHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----------CCCceEEEEEEEEc-CCCCeEEEEeCCCceeecCceEEcC
Q 028162 117 KCRLHELANKRRISVTGASKLLANILYSYR----------GMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGS 185 (212)
Q Consensus 117 ~~~~~~~~~~~~isv~~la~~ls~~l~~~r----------~~p~~v~~ivaG~D-~~gp~Ly~vDp~G~~~~~~~~aiGs 185 (212)
+++.|+++++++++++.+|+++++++|.|+ .+||++++|||||| ++||+||++||+|++.+++++|+|+
T Consensus 87 ~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGs 166 (242)
T 1ryp_E 87 AAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGS 166 (242)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEST
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECC
Confidence 999999999999999999999999999864 33899999999999 6789999999999999999999999
Q ss_pred ChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 186 GSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 186 gs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
|+.+++++||+.|+++ +|++++++.+
T Consensus 167 gs~~a~~~Le~~~~~~ms~eea~~la~~a 195 (242)
T 1ryp_E 167 GSEGAQAELLNEWHSSLTLKEAELLVLKI 195 (242)
T ss_dssp THHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 9999999999999998 7777787653
No 17
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=5.1e-42 Score=291.59 Aligned_cols=182 Identities=21% Similarity=0.207 Sum_probs=165.9
Q ss_pred CCCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCCh
Q 028162 27 AAPSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (212)
Q Consensus 27 ~~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~ 104 (212)
..+.++++.+ ++.++||+| |.++++ +|||+|||+++||||||+|+|.+ +.++.+++.+||++|+++|+|++||..
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~ 79 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVK--QGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMG 79 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHH--TSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECH
T ss_pred CcccCCceeECCCCccHHHHhHHHHHH--cCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCH
Confidence 3456666552 245599999 999999 99999999999999999999998 799999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhh-hhhhcCCcCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCeEEEEeCCCceeec
Q 028162 105 ADCQFWHRNLGIKCRL-HELANKRRISVTGASKLLANILYSYRG----MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKG 178 (212)
Q Consensus 105 aD~~~l~~~l~~~~~~-~~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~ 178 (212)
+|++.+.++++.+++. |+..++++++++.+++.++++++.++. +||++++||||||+ +||+||++||+|++.++
T Consensus 80 aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (250)
T 1ryp_B 80 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPW 159 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEee
Confidence 9999999999999999 999999999999999999999887643 49999999999997 57999999999999999
Q ss_pred CceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 179 TRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 179 ~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++|+|+|+.+++++||+.|+++ +|+++|++.+
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~a 195 (250)
T 1ryp_B 160 KATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLT 195 (250)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred ceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99999999999999999999998 7888888753
No 18
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=3e-42 Score=290.12 Aligned_cols=168 Identities=22% Similarity=0.245 Sum_probs=155.8
Q ss_pred CcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHH
Q 028162 38 DFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGI 116 (212)
Q Consensus 38 ~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~ 116 (212)
+.++||+| |.++++ +|||+|||+++||||||+|+|.+.|. . ++.+||++|+++|++++||+.+|++.+.++++.
T Consensus 15 ~Grl~QvEyA~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~~l-~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~ 89 (233)
T 1ryp_F 15 TGRLFQVEYALEAIK--QGSVTVGLRSNTHAVLVALKRNADEL-S--SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQ 89 (233)
T ss_dssp TSCCHHHHHHHHHHH--TSCCEEEEECSSEEEEEEECCCSSTT-B--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHH
T ss_pred CCeehHHHHHHHHHH--cCCCEEEEEcCCEEEEEEEecccccc-c--cccCcEEEEcCCEEEEEEechHHHHHHHHHHHH
Confidence 45699999 999999 99999999999999999999999863 2 478999999999999999999999999999999
Q ss_pred HHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----CCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHH
Q 028162 117 KCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYG 192 (212)
Q Consensus 117 ~~~~~~~~~~~~isv~~la~~ls~~l~~~r----~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~ 192 (212)
+++.|+++++++++++.+|+++++++|.|+ .+||++++||||||++||+||++||+|++.+++++|+|+|+.++++
T Consensus 90 ~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~ 169 (233)
T 1ryp_F 90 QCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKT 169 (233)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEESTTHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEECCCcHHHHH
Confidence 999999999999999999999999998763 3499999999999998999999999999999999999999999999
Q ss_pred HHHccCcC--c-----hhHHHHHhc
Q 028162 193 VLDSGCVS--I-----SHVFMLLLN 210 (212)
Q Consensus 193 ~Le~~y~~--~-----~~~~~~~~~ 210 (212)
+||+.|++ + +|++++++.
T Consensus 170 ~Le~~~~~~~~m~~s~eea~~~a~~ 194 (233)
T 1ryp_F 170 YLERTLDTFIKIDGNPDELIKAGVE 194 (233)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHhccccccCCCHHHHHHHHHH
Confidence 99999997 3 566666654
No 19
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=5.2e-42 Score=293.90 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=162.8
Q ss_pred CCCcCCCCC-CCcchhhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChh
Q 028162 28 APSFSLPLS-TDFDEFQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAA 105 (212)
Q Consensus 28 ~~~~~~p~~-~~~~~~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~a 105 (212)
.+.++++.+ ++.++||+| |.++|+ +|||+|||+++||||||+|+|.+.|. . ++.+||++|+++|+|++||+.+
T Consensus 5 ~yd~~~t~fsP~Grl~QvEYA~~av~--~Gtt~vgi~~~dgVVlaaD~r~~~gl-~--~~~~KI~~i~~~i~~~~aG~~a 79 (263)
T 1iru_F 5 QYDNDVTVWSPQGRIHQIEYAMEAVK--QGSATVGLKSKTHAVLVALKRAQSEL-A--AHQKKILHVDNHIGISIAGLTA 79 (263)
T ss_dssp TTTSCTTCCCTTSCCHHHHHHHHHHH--HSCCEEEEECSSEEEEEEECCCSSTT-B--CCCCCEEEEETTEEEEEEECHH
T ss_pred CCCCCCccCCCCCeehHHHHHHHHHH--cCCcEEEEEeCCEEEEEEeccccccc-c--cchhcEEEEcCCEEEEEeCCHH
Confidence 455555552 245599999 999999 99999999999999999999999863 2 5889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHHHhhc----CCCceEEEEEEEEcCCCCeEEEEeCCCceeecCce
Q 028162 106 DCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF 181 (212)
Q Consensus 106 D~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l~~~r----~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~ 181 (212)
|++.|.++++.+++.|+++++++++++.+++++++++|.|+ ..||+|++||||||++||+||++||+|++.+++++
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 80 DARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999774 24999999999999989999999999999999999
Q ss_pred EEcCChHHHHHHHHccCcC--c---hhHHHHHhcc
Q 028162 182 SVGSGSPYAYGVLDSGCVS--I---SHVFMLLLNG 211 (212)
Q Consensus 182 aiGsgs~~a~~~Le~~y~~--~---~~~~~~~~~~ 211 (212)
|+|+|+.+++++||+.|++ + +|+.+|++.+
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~a 194 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRA 194 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 9999999999999999997 5 8888888753
No 20
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=7.4e-41 Score=278.95 Aligned_cols=157 Identities=30% Similarity=0.500 Sum_probs=150.2
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~ 133 (212)
+|||+|||+++||||||+|+|.+.|+++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 86 (217)
T 1yar_H 7 TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEA 86 (217)
T ss_dssp --CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhc
Q 028162 134 ASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLN 210 (212)
Q Consensus 134 la~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~ 210 (212)
+|+++++++|.+|.+||++++|||||| +||+||++||+|++.+++++|+|+|+.+++++||+.|+++ +|++++++.
T Consensus 87 la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~ 165 (217)
T 1yar_H 87 VATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIR 165 (217)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 999999999999888999999999999 8999999999999999999999999999999999999998 778888865
Q ss_pred c
Q 028162 211 G 211 (212)
Q Consensus 211 ~ 211 (212)
+
T Consensus 166 a 166 (217)
T 1yar_H 166 A 166 (217)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.2e-40 Score=274.73 Aligned_cols=156 Identities=67% Similarity=1.117 Sum_probs=151.1
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++++|.+|++|+++++||||||++||+||++||+|++.+++++|+|+|+.+++++||+.|+++ +|+.++++.+
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~a 159 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRA 159 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998999999999999999999999999999999999999997 7888887653
No 22
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-40 Score=277.85 Aligned_cols=157 Identities=34% Similarity=0.492 Sum_probs=150.7
Q ss_pred CceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHH
Q 028162 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (212)
Q Consensus 55 GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~l 134 (212)
|||+|||+++||||||+|+|.+.|.++.+++++||++|+++|+|++||+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEEEcC-CCCeEEEEeCCCceeecC-ceEEcCChHHHHHHHHccCcCc---hhHHHHHh
Q 028162 135 SKLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGT-RFSVGSGSPYAYGVLDSGCVSI---SHVFMLLL 209 (212)
Q Consensus 135 a~~ls~~l~~~r~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~-~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~ 209 (212)
|+++++++|.+|.+||++++||||||+ +||+||++||+|++.+++ +.|+|+|+++++++||+.|+++ +|++++++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999999999889999999999998 789999999999999999 9999999999999999999998 77888887
Q ss_pred cc
Q 028162 210 NG 211 (212)
Q Consensus 210 ~~ 211 (212)
.+
T Consensus 161 ~a 162 (219)
T 3h4p_a 161 NA 162 (219)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.4e-40 Score=271.61 Aligned_cols=156 Identities=35% Similarity=0.549 Sum_probs=150.4
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecC-ceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT-RFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~-~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++++|.+|.+||++++||||||++||+||++||+|++.+++ ++|+|+|+.+++++||+.|+++ +|++++++.+
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~a 160 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRA 160 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHH
Confidence 99999999998889999999999999899999999999999999 9999999999999999999998 7788888653
No 24
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=4e-40 Score=271.89 Aligned_cols=161 Identities=24% Similarity=0.380 Sum_probs=153.3
Q ss_pred HhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcC
Q 028162 47 KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK 126 (212)
Q Consensus 47 ~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~ 126 (212)
.++++ +|||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|+++++
T Consensus 3 ~~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 80 (205)
T 1ryp_H 3 KGEVS--LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYG 80 (205)
T ss_dssp TTCCB--CCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCc--CCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35677 9999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---h
Q 028162 127 RRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---S 202 (212)
Q Consensus 127 ~~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~ 202 (212)
+ ++|+.+|+++++++|.+|++ +++++||||||+ +||+||++||+|++.++++.|+|+|+.+++++||+.|+++ +
T Consensus 81 ~-~~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~e 158 (205)
T 1ryp_H 81 T-PSTETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKE 158 (205)
T ss_dssp S-CCHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHH
T ss_pred C-CCHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHH
Confidence 9 99999999999999999987 999999999997 6899999999999999999999999999999999999987 6
Q ss_pred hHHHHHhcc
Q 028162 203 HVFMLLLNG 211 (212)
Q Consensus 203 ~~~~~~~~~ 211 (212)
|+.++++.+
T Consensus 159 ea~~l~~~a 167 (205)
T 1ryp_H 159 ETVDFIKHS 167 (205)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888754
No 25
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6.4e-40 Score=280.85 Aligned_cols=163 Identities=29% Similarity=0.431 Sum_probs=149.2
Q ss_pred HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhc
Q 028162 46 TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELAN 125 (212)
Q Consensus 46 a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~ 125 (212)
..++++ +|||+|||+++||||||+|+|.+.|.++.+++++||++|+++|+|++||+.+|++.+.++++.+++.|++++
T Consensus 22 ~~kav~--~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~ 99 (261)
T 3nzj_H 22 QPKATS--TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYT 99 (261)
T ss_dssp ----------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccc--cCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhh
Confidence 467888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---h
Q 028162 126 KRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---S 202 (212)
Q Consensus 126 ~~~isv~~la~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~ 202 (212)
++++++..+++++++++|.|+. ||++++||||||++||+||++||+|++.++++.|+|+|+.+++++||+.|+++ +
T Consensus 100 ~~~~~v~~~a~~l~~~l~~~~~-~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~e 178 (261)
T 3nzj_H 100 SREPRVVSALQMLKQHLFKYQG-HIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKE 178 (261)
T ss_dssp TSCCCHHHHHHHHHHHHHHTTT-CSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-cccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHH
Confidence 9999999999999999998864 79999999999999999999999999999999999999999999999999998 7
Q ss_pred hHHHHHhcc
Q 028162 203 HVFMLLLNG 211 (212)
Q Consensus 203 ~~~~~~~~~ 211 (212)
|+++|++.+
T Consensus 179 EA~~la~~a 187 (261)
T 3nzj_H 179 EAIKLASDA 187 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788888753
No 26
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.1e-40 Score=276.20 Aligned_cols=162 Identities=24% Similarity=0.289 Sum_probs=154.3
Q ss_pred hhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhh-hcC
Q 028162 48 ATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL-ANK 126 (212)
Q Consensus 48 ~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~-~~~ 126 (212)
++|+ +|||+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++++||..+|++.+.++++.+++.|++ +++
T Consensus 3 ~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (219)
T 1iru_N 3 NPMV--TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDG 80 (219)
T ss_dssp SCCS--EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCcc--CCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4676 9999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred CcCCHHHHHHHHHHHHHhhc--CCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcC--c-
Q 028162 127 RRISVTGASKLLANILYSYR--GMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVS--I- 201 (212)
Q Consensus 127 ~~isv~~la~~ls~~l~~~r--~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~--~- 201 (212)
++++++.+|+++++++|.+| .+||++++||||||++||+||++||+|++.++++.|+|+|+.+++++||+.|++ +
T Consensus 81 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~m 160 (219)
T 1iru_N 81 HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred CCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCC
Confidence 99999999999999999887 569999999999998899999999999999999999999999999999999999 6
Q ss_pred --hhHHHHHhcc
Q 028162 202 --SHVFMLLLNG 211 (212)
Q Consensus 202 --~~~~~~~~~~ 211 (212)
+|+++|++.+
T Consensus 161 t~eea~~l~~~a 172 (219)
T 1iru_N 161 SQTEARDLVERC 172 (219)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 7888888753
No 27
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=9.7e-40 Score=270.88 Aligned_cols=156 Identities=59% Similarity=1.014 Sum_probs=150.3
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEc-CCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D-~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++++|.||++||++++|||||| ++||+||++||+|++.+++++|+|+|+.+++++||+.|+++ +|+.++++.+
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~a 160 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRS 160 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999 56899999999999999999999999999999999999997 7888888653
No 28
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.6e-39 Score=269.58 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=150.7
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~ 133 (212)
+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+++++++++++.
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 87 (213)
T 1iru_M 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGA 87 (213)
T ss_dssp CCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEEEEcCCC-CeEEEEeCCCceeecCceEEcCChHHHHHHHHcc---------CcCc--
Q 028162 134 ASKLLANILYSYRGMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG---------CVSI-- 201 (212)
Q Consensus 134 la~~ls~~l~~~r~~p~~v~~ivaG~D~~g-p~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~---------y~~~-- 201 (212)
+|+++++++|.+|.+||++++||||||++| |+||++||+|++.++++.|+|+|+.+++++||+. |+++
T Consensus 88 la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s 167 (213)
T 1iru_M 88 IAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLS 167 (213)
T ss_dssp HHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCC
T ss_pred HHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCC
Confidence 999999999988878999999999999765 9999999999999999999999999999999999 7777
Q ss_pred -hhHHHHHhcc
Q 028162 202 -SHVFMLLLNG 211 (212)
Q Consensus 202 -~~~~~~~~~~ 211 (212)
+|+.++++.+
T Consensus 168 ~eea~~l~~~a 178 (213)
T 1iru_M 168 LDRAMRLVKDV 178 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7888888653
No 29
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.4e-39 Score=278.40 Aligned_cols=171 Identities=12% Similarity=0.227 Sum_probs=150.2
Q ss_pred cCCCCCCCcch---hhHH-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhH
Q 028162 31 FSLPLSTDFDE---FQKD-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (212)
Q Consensus 31 ~~~p~~~~~~~---~q~e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 106 (212)
++.|++++|+. .|+| |.++|+ +|+|+|||+++||||||+|+| +++++||++|+++|+|++||+.+|
T Consensus 1 ~~~p~~~sPe~~~~~qvEYA~~av~--~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD 70 (259)
T 1q5q_A 1 MTMPYYASAEQIMRDRSELARKGIA--RGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNE 70 (259)
T ss_dssp --------CHHHHHHHHHHHHHHHH--TSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHh--cCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHH
Confidence 35688888983 3899 999999 999999999999999999999 368899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcC-CcCCHHHHHHHHHHH---HHhhcCCCceEEEEEEEEc----CCCCeEEEEeCCCcee-e
Q 028162 107 CQFWHRNLGIKCRLHELANK-RRISVTGASKLLANI---LYSYRGMGLSVGTMIAGWD----ETGPGLYYVDSEGGRL-K 177 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~-~~isv~~la~~ls~~---l~~~r~~p~~v~~ivaG~D----~~gp~Ly~vDp~G~~~-~ 177 (212)
++.|.++++.+++.|++.++ ++++++.+|++++++ .|.++.+||+|++|||||| +.||+||++||+|++. +
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~ 150 (259)
T 1q5q_A 71 FENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDE 150 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeC
Confidence 99999999999999999987 499999999999995 3545667999999999999 6789999999999999 8
Q ss_pred cCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 178 GTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 178 ~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++.|+|+|++.++++||++|+++ +|+++|++.+
T Consensus 151 ~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~a 187 (259)
T 1q5q_A 151 QHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNA 187 (259)
T ss_dssp SSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 899999999999999999999998 7888888754
No 30
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=2.8e-39 Score=274.97 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=150.6
Q ss_pred cCCCCCCCcchhhH---H-HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhH
Q 028162 31 FSLPLSTDFDEFQK---D-TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106 (212)
Q Consensus 31 ~~~p~~~~~~~~q~---e-a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD 106 (212)
++.|.+.+|+++.. | |.+||+ +|+|+|||+++||||||+|+| +++++||++|++||+|++||+.+|
T Consensus 1 ~~~~~~~~p~~~~~~r~EYA~~av~--~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD 70 (248)
T 3mi0_A 1 MSFPYFISPEQAMRERSELARKGIA--RAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNE 70 (248)
T ss_dssp -------CHHHHHHHHHHHHHHHHH--TSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHH
T ss_pred CCCCccCCHHHhcccchHHHHHHHh--CCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHH
Confidence 35677888887765 4 999999 999999999999999999999 358899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcC-CcCCHHHHHHHHH-HHHHhh--cCCCceEEEEEEEEcC----CCCeEEEEeCCCceee-
Q 028162 107 CQFWHRNLGIKCRLHELANK-RRISVTGASKLLA-NILYSY--RGMGLSVGTMIAGWDE----TGPGLYYVDSEGGRLK- 177 (212)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~-~~isv~~la~~ls-~~l~~~--r~~p~~v~~ivaG~D~----~gp~Ly~vDp~G~~~~- 177 (212)
++.+.+.++.++++|+++++ ++++++.++++++ ++.+.| +.+||+|++||||||+ +||+||++||+|++.+
T Consensus 71 ~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e 150 (248)
T 3mi0_A 71 FDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADE 150 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeec
Confidence 99999999999999999999 8999999999999 555555 3569999999999998 7899999999999995
Q ss_pred cCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 178 GTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 178 ~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++.|+|+|++.++++||++|+++ +|+++|++.+
T Consensus 151 ~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~a 187 (248)
T 3mi0_A 151 PHFVVMGGTTEPIANALKESYAENASLTDALRIAVAA 187 (248)
T ss_dssp SSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred ccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999998 7888888754
No 31
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=3.2e-39 Score=269.92 Aligned_cols=158 Identities=22% Similarity=0.285 Sum_probs=150.9
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcC-CcCCHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK-RRISVT 132 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~-~~isv~ 132 (212)
+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+++++ ++++++
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~ 87 (222)
T 1ryp_M 8 NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSIN 87 (222)
T ss_dssp CCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHH
T ss_pred CCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEEEEcCCC-CeEEEEeCCCceeecCceEEcCChHHHHHHHHcc--------------
Q 028162 133 GASKLLANILYSYRGMGLSVGTMIAGWDETG-PGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG-------------- 197 (212)
Q Consensus 133 ~la~~ls~~l~~~r~~p~~v~~ivaG~D~~g-p~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~-------------- 197 (212)
.+|+++++++|.+|.+||++++||||||++| |+||++||+|++.++++.|+|+|+.+++++||+.
T Consensus 88 ~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~ 167 (222)
T 1ryp_M 88 SAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGK 167 (222)
T ss_dssp HHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTC
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccc
Confidence 9999999999998888999999999999765 9999999999999999999999999999999998
Q ss_pred ---CcCc---hhHHHHHhcc
Q 028162 198 ---CVSI---SHVFMLLLNG 211 (212)
Q Consensus 198 ---y~~~---~~~~~~~~~~ 211 (212)
|+++ +|+++|++.+
T Consensus 168 ~~~~~~~~s~eeA~~la~~a 187 (222)
T 1ryp_M 168 VKKPLKYLSVEEVIKLVRDS 187 (222)
T ss_dssp SBCCCCCCCHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHH
Confidence 7777 7788888654
No 32
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2.3e-39 Score=267.21 Aligned_cols=155 Identities=30% Similarity=0.466 Sum_probs=149.0
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||+.+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++++|.||+ ||++++||||||+ +||+||++||+|++.++++.++|+|+.+++++||+.|+++ +|++++++.+
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~a 159 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA 159 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999997 9999999999997 6899999999999999999999999999999999999997 7888887653
No 33
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.9e-39 Score=266.57 Aligned_cols=159 Identities=25% Similarity=0.275 Sum_probs=150.2
Q ss_pred CCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHH
Q 028162 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (212)
Q Consensus 53 ~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~ 132 (212)
.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|+++++++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 85 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPY 85 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred CCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 38999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEEEEcC--CCCeEEEEeCCCceeecCc-eEEcCChHHHHHHHHccCcCc---hhHHH
Q 028162 133 GASKLLANILYSYRGMGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGTR-FSVGSGSPYAYGVLDSGCVSI---SHVFM 206 (212)
Q Consensus 133 ~la~~ls~~l~~~r~~p~~v~~ivaG~D~--~gp~Ly~vDp~G~~~~~~~-~aiGsgs~~a~~~Le~~y~~~---~~~~~ 206 (212)
.+|+++++++|.+|..||++++||||||+ +||+||++||+|++.++.. .|+|+|+.+++++||+.|+++ +|+++
T Consensus 86 ~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 165 (205)
T 1iru_J 86 TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFE 165 (205)
T ss_dssp HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHH
Confidence 99999999999988789999999999995 6899999999999987766 789999999999999999998 77888
Q ss_pred HHhcc
Q 028162 207 LLLNG 211 (212)
Q Consensus 207 ~~~~~ 211 (212)
+++.+
T Consensus 166 l~~~a 170 (205)
T 1iru_J 166 TISQA 170 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 34
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.4e-39 Score=273.71 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=153.6
Q ss_pred hhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhh----
Q 028162 48 ATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL---- 123 (212)
Q Consensus 48 ~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~---- 123 (212)
++|+ +|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|++
T Consensus 3 ~av~--~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (233)
T 1ryp_N 3 QPIV--TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL 80 (233)
T ss_dssp CCCE--EECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccc--CCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccch
Confidence 5677 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hcCCcCCHHHHHHHHHHHHHhhc--CCCceEEEEEEEEcCC-CCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCc
Q 028162 124 -ANKRRISVTGASKLLANILYSYR--GMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCV 199 (212)
Q Consensus 124 -~~~~~isv~~la~~ls~~l~~~r--~~p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~ 199 (212)
+++++++++.+|+++++++|.+| .+||++++||||||++ ||+||++||+|++.++++.|+|+|+.+++++||+.|+
T Consensus 81 ~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 160 (233)
T 1ryp_N 81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 160 (233)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhc
Confidence 89999999999999999999887 4699999999999986 8999999999999999999999999999999999999
Q ss_pred C-----c---hhHHHHHhcc
Q 028162 200 S-----I---SHVFMLLLNG 211 (212)
Q Consensus 200 ~-----~---~~~~~~~~~~ 211 (212)
+ + +|+++|++.+
T Consensus 161 ~~~~~~~ms~eea~~la~~a 180 (233)
T 1ryp_N 161 RESDIPKTTVQVAEEAIVNA 180 (233)
T ss_dssp SGGGGGGCCHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHH
Confidence 9 7 7788888753
No 35
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=6.5e-39 Score=270.58 Aligned_cols=155 Identities=29% Similarity=0.430 Sum_probs=148.8
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++++||++|+++|+|++||..||++.+.++++.++++|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++++|.|++ ||++++||||||++||+||++||+|++.++++.|+|+|+.+++++||+.|+++ +|+.+|++.+
T Consensus 81 ~~l~~~l~~~~~-p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~a 158 (234)
T 3unf_H 81 RILRQTLFRYQG-HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEA 158 (234)
T ss_dssp HHHHHHHHHTTT-CSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHH
Confidence 999999998865 79999999999999999999999999999999999999999999999999998 7788888753
No 36
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.2e-38 Score=262.81 Aligned_cols=157 Identities=22% Similarity=0.222 Sum_probs=148.8
Q ss_pred CCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHH
Q 028162 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (212)
Q Consensus 54 ~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~ 133 (212)
+|||+|||+++||||||+|+|.+.|.++.+++.+||++|+ ++++++||..+|++.+.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 85 (204)
T 1ryp_J 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPET 85 (204)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 8999999999999999999999999999888999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEEEEcC--CCCeEEEEeCCCceeecCc-eEEcCChHHHHHHHHccCcCc---hhHHHH
Q 028162 134 ASKLLANILYSYRGMGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGTR-FSVGSGSPYAYGVLDSGCVSI---SHVFML 207 (212)
Q Consensus 134 la~~ls~~l~~~r~~p~~v~~ivaG~D~--~gp~Ly~vDp~G~~~~~~~-~aiGsgs~~a~~~Le~~y~~~---~~~~~~ 207 (212)
+|+++++++|.+|..||++++||||||+ +||+||++||+|++.++.. .|+|+|+.+++++||+.|+++ +|++++
T Consensus 86 la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 165 (204)
T 1ryp_J 86 FTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFET 165 (204)
T ss_dssp HHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHH
Confidence 9999999999888789999999999996 6899999999999977765 789999999999999999998 778888
Q ss_pred Hhcc
Q 028162 208 LLNG 211 (212)
Q Consensus 208 ~~~~ 211 (212)
++.+
T Consensus 166 ~~~a 169 (204)
T 1ryp_J 166 ISQA 169 (204)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 37
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=7e-39 Score=262.80 Aligned_cols=156 Identities=20% Similarity=0.249 Sum_probs=148.3
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|+++++++++++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 79999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC--CCceEEEEEEEEcC--CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHH
Q 028162 136 KLLANILYSYRG--MGLSVGTMIAGWDE--TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLL 208 (212)
Q Consensus 136 ~~ls~~l~~~r~--~p~~v~~ivaG~D~--~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~ 208 (212)
+++++++|.+++ .||++++||||||+ +||+||++||+|++.++++.|+|+|+.+++++||+.|+++ +|+++++
T Consensus 82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~ 161 (198)
T 1ryp_K 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLL 161 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 999999999854 49999999999996 6899999999999999999999999999999999999998 7788888
Q ss_pred hcc
Q 028162 209 LNG 211 (212)
Q Consensus 209 ~~~ 211 (212)
+.+
T Consensus 162 ~~a 164 (198)
T 1ryp_K 162 KLC 164 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 38
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=7.3e-39 Score=278.47 Aligned_cols=164 Identities=25% Similarity=0.345 Sum_probs=154.3
Q ss_pred HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhc
Q 028162 46 TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELAN 125 (212)
Q Consensus 46 a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~ 125 (212)
|.+|++ +|||+|||+++||||||+|+|.+.|+++.+++++||++|+++|+|++||..+|++.+.++++.+++.|++++
T Consensus 58 a~~Av~--~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~ 135 (294)
T 1q5r_H 58 SGDLAP--HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIE 135 (294)
T ss_dssp --CCSC--BCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--cCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhh
Confidence 788888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHhhcC---CCceEEEEEEEEcCC-C-----CeEEEEeCCCceeec--CceEEcCChHHHHHHH
Q 028162 126 KRRISVTGASKLLANILYSYRG---MGLSVGTMIAGWDET-G-----PGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVL 194 (212)
Q Consensus 126 ~~~isv~~la~~ls~~l~~~r~---~p~~v~~ivaG~D~~-g-----p~Ly~vDp~G~~~~~--~~~aiGsgs~~a~~~L 194 (212)
+++++++.+|++|++++|.+++ .||+|++||||||++ | |+||++||+|+++++ ++.|+|+|+.+++++|
T Consensus 136 g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 136 GVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 9999999999999999998865 599999999999986 6 899999999999999 8999999999999999
Q ss_pred HccCcCc---hhHHHHHhcc
Q 028162 195 DSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 195 e~~y~~~---~~~~~~~~~~ 211 (212)
|+.|+++ +|++++++.+
T Consensus 216 e~~y~~~ms~eEAi~la~~a 235 (294)
T 1q5r_H 216 KKIYSPDSDEETALRAAIES 235 (294)
T ss_dssp HHHCCSSCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHH
Confidence 9999998 7788887653
No 39
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=3.5e-38 Score=263.76 Aligned_cols=155 Identities=30% Similarity=0.421 Sum_probs=148.6
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++++||++|+++|++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++.+|.|+ .||++++||||||++||+||++||+|++.++++.|+|+|+.+++++||+.|+++ +|++++++.+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~a 158 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDA 158 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Confidence 99999999986 489999999999999999999999999999999999999999999999999998 7788888653
No 40
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=8.1e-39 Score=274.46 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=155.5
Q ss_pred HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhh--
Q 028162 46 TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL-- 123 (212)
Q Consensus 46 a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~-- 123 (212)
++++++ +|||+|||+++||||||+|+|.+.|.++.+++++||++|+++|+|++||+.+|++.+.++++.+++.|++
T Consensus 34 ~~~av~--~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~ 111 (266)
T 1g0u_M 34 TQQPIV--TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDN 111 (266)
T ss_dssp CCCCCE--EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hccCcc--cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 577888 9999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---hcCCcCCHHHHHHHHHHHHHhhc--CCCceEEEEEEEEcCC-CCeEEEEeCCCceeecCceEEcCChHHHHHHHHcc
Q 028162 124 ---ANKRRISVTGASKLLANILYSYR--GMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSG 197 (212)
Q Consensus 124 ---~~~~~isv~~la~~ls~~l~~~r--~~p~~v~~ivaG~D~~-gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~ 197 (212)
+++++++++.+|+++++++|.+| .+||++++||||||++ ||+||++||+|++.++++.|+|+|+.+++++||+.
T Consensus 112 ~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~ 191 (266)
T 1g0u_M 112 PLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKV 191 (266)
T ss_dssp TTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTT
T ss_pred chhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHh
Confidence 89999999999999999999887 4699999999999986 89999999999999999999999999999999999
Q ss_pred CcC-----c---hhHHHHHhcc
Q 028162 198 CVS-----I---SHVFMLLLNG 211 (212)
Q Consensus 198 y~~-----~---~~~~~~~~~~ 211 (212)
|++ + +|+++|++.+
T Consensus 192 ~~~~~~~~~ms~eeA~~la~~a 213 (266)
T 1g0u_M 192 VDRESDIPKTTVQVAEEAIVNA 213 (266)
T ss_dssp CSSGGGGGGCCHHHHHHHHHHH
T ss_pred hcccccCCCCCHHHHHHHHHHH
Confidence 999 6 7788888753
No 41
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=9.8e-38 Score=263.12 Aligned_cols=155 Identities=29% Similarity=0.425 Sum_probs=148.5
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++|+|++||..||++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 69999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHhcc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~~~ 211 (212)
+++++.+|.|++ |+++++||||||++||+||++||+|++.++++.|+|+|+..++++||+.|+++ +|+.++++.+
T Consensus 81 ~~l~~~l~~~~~-~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~a 158 (234)
T 1iru_I 81 RMLKQMLFRYRG-YIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEA 158 (234)
T ss_dssp HHHHHHHHHTTT-CSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHH
T ss_pred HHHHHHHHhcCC-CCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 999999999875 79999999999999999999999999999999999999999999999999987 7888888653
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=5e-38 Score=258.43 Aligned_cols=156 Identities=22% Similarity=0.261 Sum_probs=146.3
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhhcC-CCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceEEcCChHHHHHHHHccCcCc---hhHHHHHh
Q 028162 136 KLLANIL-YSYRG-MGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGCVSI---SHVFMLLL 209 (212)
Q Consensus 136 ~~ls~~l-~~~r~-~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~aiGsgs~~a~~~Le~~y~~~---~~~~~~~~ 209 (212)
+++++.+ +.++. .||++++||||||+ +||+||++||+|++.++++.|+|+|+++++++||+.|+++ +|++++++
T Consensus 82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~ 161 (201)
T 1iru_K 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLR 161 (201)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 9998765 55444 59999999999997 6899999999999999999999999999999999999997 78888876
Q ss_pred cc
Q 028162 210 NG 211 (212)
Q Consensus 210 ~~ 211 (212)
.+
T Consensus 162 ~a 163 (201)
T 1iru_K 162 KC 163 (201)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 43
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=5.8e-38 Score=264.45 Aligned_cols=156 Identities=26% Similarity=0.362 Sum_probs=148.2
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|+++.+++++||++|+++++|++||+.+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC---CCceEEEEEEEEcCC-C-----CeEEEEeCCCceeec--CceEEcCChHHHHHHHHccCcCc---
Q 028162 136 KLLANILYSYRG---MGLSVGTMIAGWDET-G-----PGLYYVDSEGGRLKG--TRFSVGSGSPYAYGVLDSGCVSI--- 201 (212)
Q Consensus 136 ~~ls~~l~~~r~---~p~~v~~ivaG~D~~-g-----p~Ly~vDp~G~~~~~--~~~aiGsgs~~a~~~Le~~y~~~--- 201 (212)
++|++++|.+++ .||+|++||||||++ | |+||++||+|+++++ ++.|+|+|+.+++++||+.|+++
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~ 160 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE 160 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCH
Confidence 999999998763 489999999999986 7 899999999999999 89999999999999999999998
Q ss_pred hhHHHHHhcc
Q 028162 202 SHVFMLLLNG 211 (212)
Q Consensus 202 ~~~~~~~~~~ 211 (212)
+|++++++.+
T Consensus 161 eeA~~la~~a 170 (235)
T 1q5q_H 161 ETALRAAIES 170 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788887653
No 44
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=9.2e-38 Score=271.23 Aligned_cols=163 Identities=24% Similarity=0.320 Sum_probs=140.0
Q ss_pred HHhhcccCCCceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhc
Q 028162 46 TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELAN 125 (212)
Q Consensus 46 a~~ai~~~~GtTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~ 125 (212)
|.+ ++ +|||+|||+++||||||+|+|.+.|.++.+++++||++|+++|+|++||..+|++.+.++++.+++.|++.+
T Consensus 51 a~~-v~--~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~ 127 (291)
T 2jay_A 51 DAQ-LP--HGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLE 127 (291)
T ss_dssp ----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cc--CCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhc
Confidence 555 66 999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHhhcCC---CceEEEEEEEEcCC-C-----CeEEEEeCCCcee--ecCceEEcCChHHHHHHH
Q 028162 126 KRRISVTGASKLLANILYSYRGM---GLSVGTMIAGWDET-G-----PGLYYVDSEGGRL--KGTRFSVGSGSPYAYGVL 194 (212)
Q Consensus 126 ~~~isv~~la~~ls~~l~~~r~~---p~~v~~ivaG~D~~-g-----p~Ly~vDp~G~~~--~~~~~aiGsgs~~a~~~L 194 (212)
+++++++.+++++++++|.+++. ||+|++||||||++ + |+||++||+|+++ ++++.|+|+|+.+++++|
T Consensus 128 ~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~L 207 (291)
T 2jay_A 128 GVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSM 207 (291)
T ss_dssp SSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHH
Confidence 99999999999999999998652 89999999999985 4 8999999999999 888999999999999999
Q ss_pred HccCcCc---hhHHHHHhcc
Q 028162 195 DSGCVSI---SHVFMLLLNG 211 (212)
Q Consensus 195 e~~y~~~---~~~~~~~~~~ 211 (212)
|+.|+++ +|++++++.+
T Consensus 208 e~~~~~~ms~eEAi~la~~a 227 (291)
T 2jay_A 208 KKLYSQVTDGDSGLRVAVEA 227 (291)
T ss_dssp HHHGGGCCSHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHH
Confidence 9999998 7777787654
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.1e-37 Score=254.25 Aligned_cols=153 Identities=31% Similarity=0.472 Sum_probs=144.6
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeeecCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la 135 (212)
||+|||+++||||||+|+|.+.|.++.+++++||++|++++++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEcC-CCCeEEEEeCCCceeecCceE-EcCChHHHHHHHHccCcCc---hhHHHHHhc
Q 028162 136 KLLANILYSYRGMGLSVGTMIAGWDE-TGPGLYYVDSEGGRLKGTRFS-VGSGSPYAYGVLDSGCVSI---SHVFMLLLN 210 (212)
Q Consensus 136 ~~ls~~l~~~r~~p~~v~~ivaG~D~-~gp~Ly~vDp~G~~~~~~~~a-iGsgs~~a~~~Le~~y~~~---~~~~~~~~~ 210 (212)
+++++++|.+|. ||++++||||||+ +||+||+ |+|++.+++.++ +|+|+++++++||+.|+++ +|++++++.
T Consensus 81 ~~l~~~l~~~~~-p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~ 157 (199)
T 3unf_N 81 NVVKNISYKYRE-DLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTN 157 (199)
T ss_dssp HHHHHHHHHTTT-TCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 999999999875 8999999999998 5799999 999988888776 5999999999999999998 778888875
Q ss_pred c
Q 028162 211 G 211 (212)
Q Consensus 211 ~ 211 (212)
+
T Consensus 158 a 158 (199)
T 3unf_N 158 A 158 (199)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=3.1e-33 Score=225.42 Aligned_cols=147 Identities=19% Similarity=0.227 Sum_probs=131.3
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeee-cCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~l 134 (212)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++++++++||+.+|++.|.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6999999999999999999999989999999999999 9999999999999999999999999999985 45566
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEEEcCCCCeEEEEeCCCceeecC---ceEEcCChHHHHHHHHccCc-CchhHHHHHhc
Q 028162 135 SKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGT---RFSVGSGSPYAYGVLDSGCV-SISHVFMLLLN 210 (212)
Q Consensus 135 a~~ls~~l~~~r~~p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~---~~aiGsgs~~a~~~Le~~y~-~~~~~~~~~~~ 210 (212)
+..|++.++.+|..| .++.+++|+| ||+||++||+|++.+++ +.|+|+|+++|+++||+.|+ +++.+.+|++.
T Consensus 75 ~~~l~~~~~~~~~~r-~~~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~~l~~~ 151 (174)
T 1g3k_A 75 AVELAKDWRTDRALR-KLEAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEK 151 (174)
T ss_dssp HHHHHHHHHHSTTGG-GCCCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHhccCcC-cceEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 777888888776654 2567899998 79999999999999988 89999999999999999999 88666677654
Q ss_pred c
Q 028162 211 G 211 (212)
Q Consensus 211 ~ 211 (212)
+
T Consensus 152 a 152 (174)
T 1g3k_A 152 S 152 (174)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=4.2e-33 Score=223.93 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=130.0
Q ss_pred ceEEEEEeCCeEEEEEecCccCCceeecCCccceeee-cCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHH
Q 028162 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (212)
Q Consensus 56 tTvigi~~~dGVVlaaD~r~s~g~~i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~l 134 (212)
||+|||+++||||||+|+|.+.|.++.+++++||++| ++++++++||..+|++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999999999855 26666
Q ss_pred HHHHHHHHHhhcCC-CceEEEEEEEEcCCCCeEEEEeCCCceeecC--ceEEcCChHHHHHHHHccCc-CchhHHHHHhc
Q 028162 135 SKLLANILYSYRGM-GLSVGTMIAGWDETGPGLYYVDSEGGRLKGT--RFSVGSGSPYAYGVLDSGCV-SISHVFMLLLN 210 (212)
Q Consensus 135 a~~ls~~l~~~r~~-p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~~~--~~aiGsgs~~a~~~Le~~y~-~~~~~~~~~~~ 210 (212)
+++. +.++.++.. |+++++|++ | ||+||++||+|++.+++ +.|+|+|+++++++||+.|+ +++.+.+|++.
T Consensus 76 ~~l~-~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~~~l~~~ 150 (171)
T 1m4y_A 76 VELA-KDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEK 150 (171)
T ss_dssp HHHH-HHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHH-HHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 6664 466666654 599988888 6 89999999999999987 99999999999999999999 88777777664
Q ss_pred c
Q 028162 211 G 211 (212)
Q Consensus 211 ~ 211 (212)
+
T Consensus 151 a 151 (171)
T 1m4y_A 151 A 151 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.7e-32 Score=222.45 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=128.2
Q ss_pred CCCceEEEEEeCCeEEEEEecCccCCce-eecCCccceeee-cCcEEEEecCChhHHHHHHHHHHHHHhhhhhhcCCcCC
Q 028162 53 AKGTTTLAFIFKEGVMVAADSRASMGGY-ISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRIS 130 (212)
Q Consensus 53 ~~GtTvigi~~~dGVVlaaD~r~s~g~~-i~~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~is 130 (212)
.+|||+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++++++++||..+|++.|.++++.+++.|+ + ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 4899999999999999999999999988 999999999999 999999999999999999999999999998 3 33
Q ss_pred HHHHHHHHHHHHHhhcCC-CceEEEEEEEEcCCCCeEEEEeCCCceee--cCceEEcCChHHHHHHHHccCcC---chhH
Q 028162 131 VTGASKLLANILYSYRGM-GLSVGTMIAGWDETGPGLYYVDSEGGRLK--GTRFSVGSGSPYAYGVLDSGCVS---ISHV 204 (212)
Q Consensus 131 v~~la~~ls~~l~~~r~~-p~~v~~ivaG~D~~gp~Ly~vDp~G~~~~--~~~~aiGsgs~~a~~~Le~~y~~---~~~~ 204 (212)
++.++ .+++.++.++.. ||++++||| | ||+||++||+|++.+ +++.|+|+|+.+|+++||+.|++ ++.+
T Consensus 78 ~~~~~-~l~~~~~~~~~~rp~~~~~lva--d--~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ 152 (180)
T 2z3b_A 78 KRAAV-ELAKEWRSDKVLRKLEAMLIVM--N--QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSA 152 (180)
T ss_dssp HHHHH-HHHHHHHHCTTGGGCCCCEEEE--C--SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCH
T ss_pred HHHHH-HHHHHHHhhhCcCcceEEEEEE--c--CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCH
Confidence 44444 456666666544 899999999 4 799999999999998 48899999999999999999998 7555
Q ss_pred HHHHh
Q 028162 205 FMLLL 209 (212)
Q Consensus 205 ~~~~~ 209 (212)
.++++
T Consensus 153 eel~~ 157 (180)
T 2z3b_A 153 SEIAR 157 (180)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 49
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=21.60 E-value=1e+02 Score=22.91 Aligned_cols=36 Identities=14% Similarity=-0.140 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHHHHhhhhhhcCCcCCHHHHHHHHHHHH
Q 028162 103 GAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANIL 142 (212)
Q Consensus 103 ~~aD~~~l~~~l~~~~~~~~~~~~~~isv~~la~~ls~~l 142 (212)
++.|--.+++.+ |.|..+++..++++.+.+.+...+
T Consensus 62 LTe~HWeVI~fl----R~fY~e~~~sP~iR~L~K~~~~~~ 97 (132)
T 1yx3_A 62 LTEEHWDIINFL----REYYEEYQIAPAVRVLTKAVGKKL 97 (132)
T ss_dssp CCHHHHHHHHHH----HHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH----HHHHHHHCCCChHHHHHHHHHHHh
Confidence 455666666666 556677888899999999885443
Done!