Query 028165
Match_columns 212
No_of_seqs 55 out of 57
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 11:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r9z_A WHY2 protein; stwhy2, s 100.0 2.2E-69 7.4E-74 455.0 16.0 155 50-204 2-158 (178)
2 1l3a_A PBF-2, P24: plant trans 100.0 6.5E-65 2.2E-69 440.5 18.1 153 52-204 31-185 (227)
3 1aoc_A Coagulogen; coagulation 84.9 0.45 1.6E-05 39.3 2.4 53 60-119 78-130 (175)
4 1vq8_1 50S ribosomal protein L 27.4 19 0.00066 25.2 0.9 14 103-116 42-55 (57)
5 2q3l_A Uncharacterized protein 22.4 1.5E+02 0.0051 22.1 5.1 42 156-208 10-51 (126)
6 1ylx_A Hypothetical protein AP 20.5 1.7E+02 0.0057 22.6 5.0 41 54-97 39-79 (103)
7 2quo_A Heat-labIle enterotoxin 20.1 94 0.0032 24.1 3.6 61 107-174 36-100 (126)
8 3j21_e 50S ribosomal protein L 19.6 30 0.001 24.6 0.6 14 103-116 42-55 (62)
9 2ook_A Hypothetical protein; s 18.2 2.2E+02 0.0075 21.1 5.3 41 156-207 10-52 (127)
10 3iz5_l 60S ribosomal protein L 14.7 48 0.0016 25.3 0.7 14 103-116 40-53 (94)
No 1
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=100.00 E-value=2.2e-69 Score=454.97 Aligned_cols=155 Identities=68% Similarity=1.074 Sum_probs=140.6
Q ss_pred ccCCCCCceeeeceeeeecceeEEEeecCCceeecCCCCeeEeeeceEEEEeeecccCcccccccceeEeeChhhhhhhh
Q 028165 50 SAKGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLL 129 (212)
Q Consensus 50 ~~~~~~~~rvy~~ysVYkgKaAls~~p~~PtF~~~~sG~~kv~R~G~vlLeFAPavG~RqYDW~kKq~FsLS~tEvG~Ll 129 (212)
+++|.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+||||||||+|+|||||+|||+|+|||+|||+||
T Consensus 2 ~~~~~~~~rvy~~~sVYkgkAAl~v~pi~Ptf~~~~sg~~~v~R~G~ilLefapa~g~rqYDW~kK~~FsLS~tEvG~Ll 81 (178)
T 3r9z_A 2 ADAGKREGRVFAPYSVFKGAAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLI 81 (178)
T ss_dssp -----CTTCCCCCEEEECSSEEEEEEEECCCEEECTTSSEEECSCCEEEEEEEEEEETTEECGGGCEEEEECHHHHHHHH
T ss_pred CCCCCCCCccccCeeEECCceEEEEEecCCcceEcCCCCEEEeeCCEEEEEEeecccccccccccCeEEEeCHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcceeeeCccCcCCCccccceeeEEeeCCCC--ceEEEEEeecccCCCceeeeccchhHHHHHHHHHHHHHc
Q 028165 130 TMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTACICIAS 204 (212)
Q Consensus 130 slg~~~s~EffHDP~~g~S~~G~v~K~LkIep~~dG--~F~nLsV~n~~~~~~~~~~vPVt~aEfavlrsl~~f~l~ 204 (212)
+++++++|||||||+||+|++|+|+|+|||||++|| +||||||+|++++.+++++||||+|||+||+++|+|+|-
T Consensus 82 sl~~~~s~effHDP~~g~s~~g~v~K~Lkiep~~dgsG~f~~Lsv~n~~~~~~~~~~vpvt~gEfav~~~~~~~~lP 158 (178)
T 3r9z_A 82 SMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALP 158 (178)
T ss_dssp TCCTTCCEEEEECC--------CEEEEEEEEECTTSSEEEEEEEEEETTTTEEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HhcccCcceeEeCcccCCCccCCceeEEEEEECCCCcceEEEEEEecccccccccEEEEecHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999999984
No 2
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=100.00 E-value=6.5e-65 Score=440.51 Aligned_cols=153 Identities=44% Similarity=0.835 Sum_probs=147.1
Q ss_pred CCCCCceeeeceeeeecceeEEEeecCCceeecCCCCeeEeeeceEEEEeeecccCcccccccceeEeeChhhhhhhhhc
Q 028165 52 KGSLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFALSPTEVGSLLTM 131 (212)
Q Consensus 52 ~~~~~~rvy~~ysVYkgKaAls~~p~~PtF~~~~sG~~kv~R~G~vlLeFAPavG~RqYDW~kKq~FsLS~tEvG~Llsl 131 (212)
++.+++|||++|+||||||||+|+|++|+|+.++||+++++|+|+|||||||++|+|||||+|||+|+||++|||+||++
T Consensus 31 a~~~~~Rvf~~ysVYkgkAALsv~pi~PtF~~l~sG~~kv~R~G~ILLEFAPa~g~RqYDW~kKq~FsLS~tEvG~LLsl 110 (227)
T 1l3a_A 31 QGASTPKVFVGYSIYKGKAALTVEPRSPEFSPLDSGAFKLSREGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISL 110 (227)
T ss_dssp ----CCCEECCEEEECSSEEEEEEEECCEEEECSTTEEEEEECCEEEEEEEEBCSTTCBCGGGCEEEEECHHHHHHHHTC
T ss_pred CCCCCCeeecceeEEccceEEEEEecCCcceEcCCCcEEEeeCCEEEEEEeeccCccccccccceEEEeCHHHHhHHHhc
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeCccCcCCCccccceeeEEeeCCCC--ceEEEEEeecccCCCceeeeccchhHHHHHHHHHHHHHc
Q 028165 132 GPRDSSEFFHDPAMLSSNAGQMRKSLSIKANADG--FFISLNVANNILKTNERFVVPVSTAEFAVMKTACICIAS 204 (212)
Q Consensus 132 g~~~s~EffHDP~~g~S~~G~v~K~LkIep~~dG--~F~nLsV~n~~~~~~~~~~vPVt~aEfavlrsl~~f~l~ 204 (212)
+++++|||||||+||+|++|+++|+|+|||+||| +||||+|+|++.+.+++++||||+|||+|||++|+|+|-
T Consensus 111 ~~~~s~effHdP~~g~s~~g~v~K~LkIep~pdGsG~f~nLSV~nk~~~~de~~~VpVs~gEfaV~rsl~~f~LP 185 (227)
T 1l3a_A 111 GTKDSCEFFHDPNKGRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVMP 185 (227)
T ss_dssp CTTCCEEEEECSCCSSSCCCCCEEEEEEEECTTSSEEEEEEEEEEGGGTEEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEecCCcCCcccccceeEEEEeecCCCcccEEEEEeeecccCCcceEEEechHHHHHHHHHHHHhhch
Confidence 9999999999999999999999999999999997 999999999999999999999999999999999999984
No 3
>1aoc_A Coagulogen; coagulation factor, clottable protein, cystine knot superfamily; 2.00A {Tachypleus tridentatus} SCOP: g.17.1.5
Probab=84.91 E-value=0.45 Score=39.28 Aligned_cols=53 Identities=26% Similarity=0.570 Sum_probs=46.7
Q ss_pred eeceeeeecceeEEEeecCCceeecCCCCeeEeeeceEEEEeeecccCcccccccceeEe
Q 028165 60 FAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVILLTFAPAIGERKYDWAKKQHFA 119 (212)
Q Consensus 60 y~~ysVYkgKaAls~~p~~PtF~~~~sG~~kv~R~G~vlLeFAPavG~RqYDW~kKq~Fs 119 (212)
|+||+-|++.+-.+.+..-|.|.-.-+|.++ |++| ||.+|-||--|+.|-.|.
T Consensus 78 f~pf~hf~secpvstrdcepvfgyt~a~efr------vivq-apragfrqcvwqhkcryg 130 (175)
T 1aoc_A 78 FPPFTHFKSECPVSTRDCEPVFGYTVAGEFR------VIVQ-APRAGFRQCVWQHKCRFG 130 (175)
T ss_dssp STTCCCCSSBCCEEEECCCCSEEEBTTCCEE------EECC-BTTTTBCBCCCEEEETTS
T ss_pred CCCcccccccCCcccccccccccceecceEE------EEEe-CchhhhHHHHHhhhcccc
Confidence 6999999999999999999999998888776 4455 999999999999997653
No 4
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=27.39 E-value=19 Score=25.25 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=11.7
Q ss_pred ecccCcccccccce
Q 028165 103 PAIGERKYDWAKKQ 116 (212)
Q Consensus 103 PavG~RqYDW~kKq 116 (212)
|+.--|+|+|+.|-
T Consensus 42 pa~r~R~ynWs~Ka 55 (57)
T 1vq8_1 42 KSAKRRDYEWQSKA 55 (57)
T ss_dssp TCSSCCCCGGGSCT
T ss_pred chhhhcCcchhhhh
Confidence 77778999999883
No 5
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=22.41 E-value=1.5e+02 Score=22.05 Aligned_cols=42 Identities=10% Similarity=0.292 Sum_probs=32.5
Q ss_pred eeEEeeCCCCceEEEEEeecccCCCceeeeccchhHHHHHHHHHHHHHccCCC
Q 028165 156 SLSIKANADGFFISLNVANNILKTNERFVVPVSTAEFAVMKTACICIASSHGL 208 (212)
Q Consensus 156 ~LkIep~~dG~F~nLsV~n~~~~~~~~~~vPVt~aEfavlrsl~~f~l~~~~~ 208 (212)
.|.|+|.+++..+.+.+.. .+|.+|+..+..+++-++..||-
T Consensus 10 mi~i~~~~~~~vl~v~~~G-----------~lt~~d~~~l~~~l~~~l~~~~~ 51 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVG-----------KLTHEDYEQMTPLLESALAGIKT 51 (126)
T ss_dssp EEEEEEETTEEEEEEEEEE-----------EECHHHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEEcCCCCEEEEEEEe-----------eECHHHHHHHHHHHHHHHHhCCC
Confidence 4667777777766665554 47899999999999999998873
No 6
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=20.45 E-value=1.7e+02 Score=22.63 Aligned_cols=41 Identities=22% Similarity=0.501 Sum_probs=30.2
Q ss_pred CCCceeeeceeeeecceeEEEeecCCceeecCCCCeeEeeeceE
Q 028165 54 SLGGRIFAPYYVYKGKAAFSVDPVLPTFMKLDSGDLKVKRKGVI 97 (212)
Q Consensus 54 ~~~~rvy~~ysVYkgKaAls~~p~~PtF~~~~sG~~kv~R~G~v 97 (212)
.+..|.|.+|+|=|-.-++.+.- | |.+...|.+.+.+.+|-
T Consensus 39 Gegn~YY~GYTVkKdd~~~~ih~--P-fikdedG~La~ekqeWT 79 (103)
T 1ylx_A 39 GEGNRYYVGYTINKDDEMITIHM--P-FVKNERGELALEKQEWT 79 (103)
T ss_dssp CSTTEEEEEEEEEETTEEEEEEE--E-EEECTTSCEEECCSCEE
T ss_pred CCCceEEEEEEEccCCeEEEEec--c-ceecCCCceeeecceeE
Confidence 56789999999999887776653 2 66677777766665553
No 7
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=20.08 E-value=94 Score=24.14 Aligned_cols=61 Identities=15% Similarity=0.363 Sum_probs=42.5
Q ss_pred CcccccccceeEeeChhhhhhhhhcCCCCcceeeeCccCcCCCccccceeeEEee-CCCC---ceEEEEEee
Q 028165 107 ERKYDWAKKQHFALSPTEVGSLLTMGPRDSSEFFHDPAMLSSNAGQMRKSLSIKA-NADG---FFISLNVAN 174 (212)
Q Consensus 107 ~RqYDW~kKq~FsLS~tEvG~Llslg~~~s~EffHDP~~g~S~~G~v~K~LkIep-~~dG---~F~nLsV~n 174 (212)
...|-|.+|...-|+.+.-|.--.+.+.+-+.|-.- ..+.....|+|. ++|| +|+.+|...
T Consensus 36 snsypwtqklnlhltitatgqkyrilaskivdfniy-------snnfnnlvkleqslgdgvkdhyvdislda 100 (126)
T 2quo_A 36 SNSYPWTQKLNLHLTITATGQKYRILASKIVDFNIY-------SNNFNNLVKLEQSLGDGVKDHYVDISLDA 100 (126)
T ss_dssp SSCBCTTCCEEEEEEECSSSEEEEEEECTTEEEEEE-------ECTTSSCEEEEEECCCSSSCEEEEEEECS
T ss_pred cCCCcchheeeeEEEEEecCcEEeeeeeeeeeeEee-------ccchhHHHHHHHHhcccchhceEEEEecC
Confidence 457999999999999888888777766666666321 122334566776 6777 998888643
No 8
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=19.61 E-value=30 Score=24.63 Aligned_cols=14 Identities=43% Similarity=0.677 Sum_probs=11.0
Q ss_pred ecccCcccccccce
Q 028165 103 PAIGERKYDWAKKQ 116 (212)
Q Consensus 103 PavG~RqYDW~kKq 116 (212)
|+.--|+|+|+.|-
T Consensus 42 ps~r~R~YnWs~Ka 55 (62)
T 3j21_e 42 RSRRLRKYRWSKKW 55 (62)
T ss_dssp TCSSCCCCTTCSHH
T ss_pred hhhhhccccHHHHh
Confidence 66667999999874
No 9
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=18.21 E-value=2.2e+02 Score=21.11 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=31.6
Q ss_pred eeEEeeCCCCceEEEEEeecccCCCceeeeccchhHHHHHHHHHHHHHcc--CC
Q 028165 156 SLSIKANADGFFISLNVANNILKTNERFVVPVSTAEFAVMKTACICIASS--HG 207 (212)
Q Consensus 156 ~LkIep~~dG~F~nLsV~n~~~~~~~~~~vPVt~aEfavlrsl~~f~l~~--~~ 207 (212)
.+.|+|..++..+.+.+.. .+|.+|+..+..+++-++.. ||
T Consensus 10 mi~i~~~~~~~vl~v~~~G-----------~lt~eD~~~l~~~i~~~l~~~~~~ 52 (127)
T 2ook_A 10 SIGINRIESVFFVTLKAIG-----------TLTHEDYLVITPMLEGALSQVDQP 52 (127)
T ss_dssp EEEEEEETTEEEEEEEEEE-----------EECHHHHHHHHHHHHHHHTTCCCS
T ss_pred eEEEEEcCCCCEEEEEEee-----------eECHHHHHHHHHHHHHHHhhccCC
Confidence 4566677777766665554 47899999999999999998 66
No 10
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=14.72 E-value=48 Score=25.32 Aligned_cols=14 Identities=50% Similarity=0.952 Sum_probs=11.7
Q ss_pred ecccCcccccccce
Q 028165 103 PAIGERKYDWAKKQ 116 (212)
Q Consensus 103 PavG~RqYDW~kKq 116 (212)
|+.--|+|+|+.|-
T Consensus 40 ps~r~R~YnWs~Ka 53 (94)
T 3iz5_l 40 PAARIRKYNWSVKA 53 (94)
T ss_dssp SCSSCCCCSSSCHH
T ss_pred chhhcccccHHHhh
Confidence 66778999999884
Done!