BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028167
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P71|C Chain C, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
Length = 304
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 114/157 (72%), Gaps = 24/157 (15%)
Query: 16 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQI 75
+ I QL +CK LSE QVK+LCEKAKEIL +ESNVQ V+ PVT+CGD+HGQFHDL ELF+I
Sbjct: 12 QWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRI 71
Query: 76 GGK------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYD 111
GGK LLVALKVRY +RITILRGNHESRQITQVYGFYD
Sbjct: 72 GGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYD 131
Query: 112 ECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
ECLRKYGNAN+WK FTDLFDY PLTAL C+ G
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHG 168
>pdb|2NYL|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 293
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 114/157 (72%), Gaps = 24/157 (15%)
Query: 16 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQI 75
+ I QL +CK LSE QVK+LCEKAKEIL +ESNVQ V+ PVT+CGD+HGQFHDL ELF+I
Sbjct: 11 QWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRI 70
Query: 76 GGK------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYD 111
GGK LLVALKVRY +RITILRGNHESRQITQVYGFYD
Sbjct: 71 GGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYD 130
Query: 112 ECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
ECLRKYGNAN+WK FTDLFDY PLTAL C+ G
Sbjct: 131 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHG 167
>pdb|3FGA|C Chain C, Structural Basis Of Pp2a And Sgo Interaction
Length = 309
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 114/157 (72%), Gaps = 24/157 (15%)
Query: 16 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQI 75
+ I QL +CK LSE QVK+LCEKAKEIL +ESNVQ V+ PVT+CGD+HGQFHDL ELF+I
Sbjct: 12 QWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRI 71
Query: 76 GGK------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYD 111
GGK LLVALKVRY +RITILRGNHESRQITQVYGFYD
Sbjct: 72 GGKSPDTNYLFMGDYVNRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYD 131
Query: 112 ECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
ECLRKYGNAN+WK FTDLFDY PLTAL C+ G
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHG 168
>pdb|2IE4|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|C Chain C, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|F Chain F, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3DW8|C Chain C, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|F Chain F, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3K7V|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 309
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 114/157 (72%), Gaps = 24/157 (15%)
Query: 16 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQI 75
+ I QL +CK LSE QVK+LCEKAKEIL +ESNVQ V+ PVT+CGD+HGQFHDL ELF+I
Sbjct: 12 QWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRI 71
Query: 76 GGK------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYD 111
GGK LLVALKVRY +RITILRGNHESRQITQVYGFYD
Sbjct: 72 GGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYD 131
Query: 112 ECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
ECLRKYGNAN+WK FTDLFDY PLTAL C+ G
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHG 168
>pdb|2IE3|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
Length = 309
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 114/157 (72%), Gaps = 24/157 (15%)
Query: 16 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQI 75
+ I QL +CK LSE QVK+LCEKAKEIL +ESNVQ V+ PVT+CGD+HGQFHDL ELF+I
Sbjct: 12 QWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRI 71
Query: 76 GGK------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYD 111
GGK LLVALKVRY +RITILRGNHESRQITQVYGFYD
Sbjct: 72 GGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYD 131
Query: 112 ECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
ECLRKYGNAN+WK FTDLFDY PLTAL C+ G
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHG 168
>pdb|3C5W|C Chain C, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 114/157 (72%), Gaps = 24/157 (15%)
Query: 16 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQI 75
+ I QL +CK LSE QVK+LCEKAKEIL +ESNVQ V+ PVT+CGD+HGQFHDL ELF+I
Sbjct: 13 QWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRI 72
Query: 76 GGK------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYD 111
GGK LLVALKVRY +RITILRGNHESRQITQVYGFYD
Sbjct: 73 GGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYD 132
Query: 112 ECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
ECLRKYGNAN+WK FTDLFDY PLTAL C+ G
Sbjct: 133 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHG 169
>pdb|2IAE|C Chain C, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|F Chain F, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 309
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 114/157 (72%), Gaps = 24/157 (15%)
Query: 16 EQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQI 75
+ I QL +CK LSE QVK+LCEKAKEIL +ESNVQ V+ PVT+CGD+HGQFHDL ELF+I
Sbjct: 12 QWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRI 71
Query: 76 GGK------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYD 111
GGK LLVALKVRY +RITILRGNHESRQITQVYGFYD
Sbjct: 72 GGKSPDTNYLFMGDYVNRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYD 131
Query: 112 ECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
ECLRKYGNAN+WK FTDLFDY PLTAL C+ G
Sbjct: 132 ECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHG 168
>pdb|3N5U|A Chain A, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
pdb|3N5U|B Chain B, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
Length = 300
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L+E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 30 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 89
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 90 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 148
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 149 WKTFTDCFNCLPIAAIVDEKIFCCHG 174
>pdb|3E7A|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7A|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7B|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
pdb|3E7B|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
Length = 299
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L+E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 29 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 88
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 89 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 147
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 148 WKTFTDCFNCLPIAAIVDEKIFCCHG 173
>pdb|3V4Y|A Chain A, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|C Chain C, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|E Chain E, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|G Chain G, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
Length = 306
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L+E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 29 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 88
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 89 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 147
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 148 WKTFTDCFNCLPIAAIVDEKIFCCHG 173
>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
pdb|1FJM|B Chain B, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
Length = 330
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L+E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 30 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 89
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 90 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 148
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 149 WKTFTDCFNCLPIAAIVDEKIFCCHG 174
>pdb|4G9J|A Chain A, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
pdb|4G9J|B Chain B, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
Length = 331
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L+E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 31 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 90
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 91 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 149
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 150 WKTFTDCFNCLPIAAIVDEKIFCCHG 175
>pdb|1U32|A Chain A, Crystal Structure Of A Protein Phosphatase-1: Calcineurin
Hybrid Bound To Okadaic Acid
Length = 293
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 25 LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 84
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 85 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 143
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 144 WKTFTDCFNCLPIAAIVDEKIFCCHG 169
>pdb|3EGG|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGH|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3HVQ|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 329
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L+E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 29 LTENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 88
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 89 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 147
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 148 WKTFTDCFNCLPIAAIVDEKIFCCHG 173
>pdb|1JK7|A Chain A, Crystal Structure Of The Tumor-Promoter Okadaic Acid Bound
To Protein Phosphatase-1
pdb|1IT6|A Chain A, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|1IT6|B Chain B, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|2BCD|A Chain A, X-Ray Crystal Structure Of Protein Phosphatase-1 With The
Marine Toxin Motuporin Bound
pdb|2BDX|A Chain A, X-Ray Crystal Structure Of Dihydromicrocystin-La Bound To
Protein Phosphatase-1
Length = 323
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 30 LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 89
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 90 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 148
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 149 WKTFTDCFNCLPIAAIVDEKIFCCHG 174
>pdb|2O8A|A Chain A, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8A|B Chain B, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8G|A Chain A, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
pdb|2O8G|B Chain B, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
Length = 329
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 25/146 (17%)
Query: 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------- 78
L E +++ LC K++EI + + + +++P+ ICGDIHGQ++DL LF+ GG
Sbjct: 36 LQENEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 95
Query: 79 ----------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANI 122
LL+A K++YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 96 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 154
Query: 123 WKIFTDLFDYFPLTALSQKYSVCMVG 148
WK FTD F+ P+ A+ + C G
Sbjct: 155 WKTFTDCFNCLPIAAIVDEKIFCCHG 180
>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 330
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 92/163 (56%), Gaps = 33/163 (20%)
Query: 18 ISQLMQ---CKP-----LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDL 69
I++L++ C+P ++E +V+ LC K++EI + + + +++P+ ICGDIHGQ+ DL
Sbjct: 15 ITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDL 74
Query: 70 AELFQIGGK------------------------LLVALKVRYPQRITILRGNHESRQITQ 105
LF+ GG LL+A K++YP+ +LRGNHE I +
Sbjct: 75 LRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINR 134
Query: 106 VYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
+YGFYDEC R++ N +WK FTD F+ P+ A+ + C G
Sbjct: 135 IYGFYDECKRRF-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHG 176
>pdb|3LL8|A Chain A, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|C Chain C, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 357
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 19 SQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK 78
+ LM+ L E + + IL +E N+ + +PVT+CGDIHGQF DL +LF++GG
Sbjct: 35 AHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGS 94
Query: 79 ------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114
L ALK+ YP+ + +LRGNHE R +T+ + F EC
Sbjct: 95 PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 154
Query: 115 RKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
KY + ++ D FD PL AL + +C+ G
Sbjct: 155 IKY-SERVYDACMDAFDCLPLAALMNQQFLCVHG 187
>pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|E Chain E, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 372
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 19 SQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK 78
+ LM+ L E + + IL +E N+ + +PVT+CGDIHGQF DL +LF++GG
Sbjct: 48 AHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGS 107
Query: 79 ------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114
L ALK+ YP+ + +LRGNHE R +T+ + F EC
Sbjct: 108 PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 167
Query: 115 RKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
KY + ++ D FD PL AL + +C+ G
Sbjct: 168 IKY-SERVYDACMDAFDCLPLAALMNQQFLCVHG 200
>pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 373
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 19 SQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK 78
+ LM+ L E + + IL +E N+ + +PVT+CGDIHGQF DL +LF++GG
Sbjct: 29 AHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGS 88
Query: 79 ------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114
L ALK+ YP+ + +LRGNHE R +T+ + F EC
Sbjct: 89 PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 148
Query: 115 RKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
KY + ++ D FD PL AL + +C+ G
Sbjct: 149 IKY-SERVYDACMDAFDCLPLAALMNQQFLCVHG 181
>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer
Length = 521
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 19 SQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK 78
+ LM+ L E + + IL +E N+ + +PVT+CGDIHGQF DL +LF++GG
Sbjct: 48 AHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGS 107
Query: 79 ------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114
L ALK+ YP+ + +LRGNHE R +T+ + F EC
Sbjct: 108 PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 167
Query: 115 RKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
KY + ++ D FD PL AL + +C+ G
Sbjct: 168 IKY-SERVYDACMDAFDCLPLAALMNQQFLCVHG 200
>pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 375
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 19 SQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK 78
+ LM+ L E + + IL +E N+ + +PVT+CGDIHGQF DL +LF++GG
Sbjct: 31 AHLMKEGRLEETVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGS 90
Query: 79 ------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114
L ALK+ YP+ + +LRGNHE R +T+ + F EC
Sbjct: 91 PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 150
Query: 115 RKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
KY + ++ D FD PL AL + +C+ G
Sbjct: 151 IKY-SERVYDACMDAFDCLPLAALMNQQFLCVHG 183
>pdb|2P6B|A Chain A, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|C Chain C, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 383
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 19 SQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK 78
+ LM+ L E + + IL +E N+ + +PVT+CGDIHGQF DL +LF++GG
Sbjct: 51 AHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGS 110
Query: 79 ------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114
L ALK+ YP+ + +LRGNHE R +T+ + F EC
Sbjct: 111 PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 170
Query: 115 RKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
KY + ++ D FD PL AL + +C+ G
Sbjct: 171 IKY-SERVYDACMDAFDCLPLAALMNQQFLCVHG 203
>pdb|2JOG|A Chain A, Structure Of The Calcineurin-Nfat Complex
Length = 327
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 25/154 (16%)
Query: 19 SQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK 78
+ LM+ L E + + IL +E N+ + +PVT+CGDIHGQF DL +LF++GG
Sbjct: 28 AHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGS 87
Query: 79 ------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114
L ALK+ YP+ + +LRGNHE R +T+ + F EC
Sbjct: 88 PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECK 147
Query: 115 RKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148
KY + ++ D FD PL AL + +C+ G
Sbjct: 148 IKY-SERVYDACMDAFDCLPLAALMNQQFLCVHG 180
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 38/133 (28%)
Query: 56 VTICGDIHGQFHDLAELFQIGG-------------------------KLLVALKVRYPQR 90
+T+CGD HGQF+DL +F++ G L K+ YP
Sbjct: 215 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 274
Query: 91 ITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVGCP 150
+LRGNHE+ + Q+YGF E KY A ++++F+++F++ PL + C+ G
Sbjct: 275 FHLLRGNHETDNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPL-------AQCING-- 324
Query: 151 LQLKLLIISGTLI 163
K+LI+ G L
Sbjct: 325 ---KVLIMHGGLF 334
>pdb|1S95|A Chain A, Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5
pdb|1S95|B Chain B, Structure Of SerineTHREONINE PROTEIN PHOSPHATASE 5
Length = 333
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 38/133 (28%)
Query: 56 VTICGDIHGQFHDLAELFQIGG-------------------------KLLVALKVRYPQR 90
+T+CGD HGQF+DL +F++ G L K+ YP
Sbjct: 71 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 130
Query: 91 ITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVGCP 150
+LRGNHE+ + Q+YGF E KY A ++++F+++F++ PL C+ G
Sbjct: 131 FHLLRGNHETDNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQ-------CING-- 180
Query: 151 LQLKLLIISGTLI 163
K+LI+ G L
Sbjct: 181 ---KVLIMHGGLF 190
>pdb|3H60|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Mn2+ Atoms
pdb|3H60|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Mn2+ Atoms
pdb|3H61|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Norcantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H61|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Norcantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H62|C Chain C, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H62|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H63|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H63|C Chain C, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H64|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Endothall
pdb|3H64|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Mn2+ Atoms Complexed With Endothall
pdb|3H66|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms
pdb|3H66|B Chain B, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms
pdb|3H67|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H67|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Complexed With Cantharidic
Acid
pdb|3H68|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H68|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c)with Two Zn2+ Atoms Originally Soaked With
Cantharidin (Which Is Present In The Structure In The
Hydrolyzed Form)
pdb|3H69|A Chain A, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms Complexed With Endothall
pdb|3H69|D Chain D, Catalytic Domain Of Human SerineTHREONINE PHOSPHATASE 5
(Pp5c) With Two Zn2+ Atoms Complexed With Endothall
Length = 315
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 38/133 (28%)
Query: 56 VTICGDIHGQFHDLAELFQIGG-------------------------KLLVALKVRYPQR 90
+T+CGD HGQF+DL +F++ G L K+ YP
Sbjct: 62 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDH 121
Query: 91 ITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVGCP 150
+LRGNHE+ + Q+YGF E KY A ++++F+++F++ PL C+ G
Sbjct: 122 FHLLRGNHETDNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQ-------CING-- 171
Query: 151 LQLKLLIISGTLI 163
K+LI+ G L
Sbjct: 172 ---KVLIMHGGLF 181
>pdb|3ICF|A Chain A, Structure Of Protein SerineTHREONINE PHOSPHATASE FROM
SACCHAROMYCES Cerevisiae With Similarity To Human
Phosphatase Pp5
pdb|3ICF|B Chain B, Structure Of Protein SerineTHREONINE PHOSPHATASE FROM
SACCHAROMYCES Cerevisiae With Similarity To Human
Phosphatase Pp5
Length = 335
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 34/157 (21%)
Query: 37 EKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK------------------ 78
++ + +E ++ VK +++CGD HGQF+D+ LF+ GK
Sbjct: 49 QEPSXVELENNSTPDVK--ISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGS 106
Query: 79 -------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFD 131
L LK+ +P + RGNHES ++YGF DEC KY + I+ F F+
Sbjct: 107 WSCEVALLFYCLKILHPNNFFLNRGNHESDNXNKIYGFEDECKYKY-SQRIFNXFAQSFE 165
Query: 132 YFPLTAL-SQKYSVCMVGCPLQLKLLIISGTLIVFKR 167
PL L + Y V G P S TL FK
Sbjct: 166 SLPLATLINNDYLVXHGGLPSD-----PSATLSDFKN 197
>pdb|2Q3N|B Chain B, Agglutinin From Abrus Precatorius (Apa-I)
pdb|2ZR1|B Chain B, Agglutinin From Abrus Precatorius
pdb|2ZR1|D Chain D, Agglutinin From Abrus Precatorius
Length = 267
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 70 AELFQIGGKLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDL 129
AE +GG L V K Y R GN S +T + GF+ C+ +GN+ ++ D+
Sbjct: 114 AESSSMGGTLTVQ-KNDYRMRQGWRTGNDTSPFVTSIAGFFKLCMEAHGNS----MWLDV 168
Query: 130 FDYFPLTALSQKYSV 144
D +T Q+++V
Sbjct: 169 CD---ITKEEQQWAV 180
>pdb|1ABR|B Chain B, Crystal Structure Of Abrin-A
Length = 267
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 70 AELFQIGGKLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIW 123
AE +GG L V Y R GN+ S +T + G+ D C++ G +N+W
Sbjct: 114 AESSSMGGTLTVQTN-EYLMRQGWRTGNNTSPFVTSISGYSDLCMQAQG-SNVW 165
>pdb|1VP5|A Chain A, Crystal Structure Of 2,5-diketo-d-gluconic Acid Reductase
(tm1009) From Thermotoga Maritima At 2.40 A Resolution
pdb|1VP5|B Chain B, Crystal Structure Of 2,5-diketo-d-gluconic Acid Reductase
(tm1009) From Thermotoga Maritima At 2.40 A Resolution
Length = 298
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 29 EPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKLLVALKVRYP 88
E KA + K++ +E ++ + P GD+H + + E+++ G + + YP
Sbjct: 100 ESTKKAFEKSLKKLQLEYIDLYLIHQPF---GDVHCAWKAMEEMYKDGLVRAIGVSNFYP 156
Query: 89 QRITILRGNHE---SRQITQVYGFYD-----ECLRKYG-NANIWKIFTD----LFDYFPL 135
R+ L +HE + +++ FY E +R Y W F + +F L
Sbjct: 157 DRLMDLMVHHEIVPAVNQIEIHPFYQRQEEIEFMRNYNIQPEAWGPFAEGRKNIFQNGVL 216
Query: 136 TALSQKYS 143
++++KY
Sbjct: 217 RSIAEKYG 224
>pdb|2VEQ|A Chain A, Insights Into Kinetochore-Dna Interactions From The
Structure Of Cep3p
Length = 565
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 116 KYGNANIWKIFTDLFDYFPLTALSQKYSV 144
KY +A IW +FT Y P+ L++ +SV
Sbjct: 114 KYWDALIWSVFTMCIYYMPVEKLAEIFSV 142
>pdb|2QUQ|A Chain A, Crystal Structure Of The Essential Inner Kinetochore
Protein Cep3p
Length = 562
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 116 KYGNANIWKIFTDLFDYFPLTALSQKYSV 144
KY +A IW +FT Y P+ L++ +SV
Sbjct: 111 KYWDALIWSVFTMCIYYMPVEKLAEIFSV 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,527,202
Number of Sequences: 62578
Number of extensions: 208945
Number of successful extensions: 659
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 57
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)