Query 028167
Match_columns 212
No_of_seqs 176 out of 1262
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:17:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 1.5E-52 3.2E-57 359.2 14.7 179 13-193 2-204 (303)
2 KOG0375 Serine-threonine phosp 100.0 1.8E-47 4E-52 342.0 13.6 184 9-195 43-250 (517)
3 KOG0373 Serine/threonine speci 100.0 1.5E-46 3.2E-51 318.7 14.1 176 10-187 2-201 (306)
4 KOG0371 Serine/threonine prote 100.0 8.3E-44 1.8E-48 307.0 11.0 185 1-187 7-215 (319)
5 KOG0374 Serine/threonine speci 100.0 6.2E-42 1.3E-46 308.0 14.7 177 10-188 5-216 (331)
6 cd07420 MPP_RdgC Drosophila me 100.0 3.2E-41 7E-46 302.5 15.0 176 10-188 3-236 (321)
7 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.3E-39 2.8E-44 288.1 15.3 174 13-188 1-198 (285)
8 PTZ00239 serine/threonine prot 100.0 1.9E-39 4.1E-44 289.2 15.6 173 13-187 2-198 (303)
9 cd07417 MPP_PP5_C PP5, C-termi 100.0 5.5E-39 1.2E-43 287.7 14.3 182 5-188 7-217 (316)
10 cd07416 MPP_PP2B PP2B, metallo 100.0 9.2E-39 2E-43 285.0 15.6 174 13-189 2-199 (305)
11 PTZ00480 serine/threonine-prot 100.0 9.2E-39 2E-43 286.5 15.1 176 9-187 6-213 (320)
12 PTZ00244 serine/threonine-prot 100.0 1.3E-37 2.8E-42 276.4 14.5 172 13-187 3-206 (294)
13 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.4E-37 3.1E-42 276.0 14.3 172 13-187 1-204 (293)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 1.4E-36 3E-41 277.1 15.2 181 9-189 7-257 (377)
15 smart00156 PP2Ac Protein phosp 100.0 9.5E-36 2.1E-40 261.7 13.3 157 27-186 1-181 (271)
16 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1.7E-33 3.6E-38 251.8 13.9 162 25-188 19-218 (311)
17 KOG0376 Serine-threonine phosp 100.0 9.4E-33 2E-37 254.9 7.5 180 9-190 165-373 (476)
18 KOG0377 Protein serine/threoni 100.0 2.1E-29 4.5E-34 230.5 7.3 157 9-168 116-303 (631)
19 cd00144 MPP_PPP_family phospho 99.6 5E-16 1.1E-20 130.5 8.1 96 57-153 1-129 (225)
20 PRK13625 bis(5'-nucleosyl)-tet 99.5 4.7E-14 1E-18 122.1 8.7 99 55-153 2-145 (245)
21 cd07423 MPP_PrpE Bacillus subt 99.4 6.9E-13 1.5E-17 113.8 8.0 98 55-153 2-142 (234)
22 cd07424 MPP_PrpA_PrpB PrpA and 99.3 3.6E-12 7.8E-17 107.2 8.7 99 55-153 2-132 (207)
23 cd07422 MPP_ApaH Escherichia c 99.3 3.9E-12 8.5E-17 111.5 8.2 96 56-153 1-124 (257)
24 TIGR00668 apaH bis(5'-nucleosy 99.3 1.4E-11 2.9E-16 109.2 8.6 97 55-153 2-126 (279)
25 PRK00166 apaH diadenosine tetr 99.2 2.4E-11 5.3E-16 107.4 8.4 97 55-153 2-126 (275)
26 cd07413 MPP_PA3087 Pseudomonas 99.2 4E-11 8.7E-16 102.5 8.7 94 57-151 2-143 (222)
27 PRK11439 pphA serine/threonine 99.2 7.7E-11 1.7E-15 100.3 7.4 97 54-150 17-145 (218)
28 cd07425 MPP_Shelphs Shewanella 99.1 2.7E-10 5.8E-15 96.6 7.0 95 57-152 1-139 (208)
29 PRK09968 serine/threonine-spec 99.0 1.2E-09 2.6E-14 93.1 8.3 97 54-150 15-143 (218)
30 PHA02239 putative protein phos 99.0 1.2E-09 2.6E-14 94.5 8.3 98 55-153 2-168 (235)
31 cd07421 MPP_Rhilphs Rhilph pho 98.9 3E-09 6.6E-14 95.0 8.2 50 55-104 3-83 (304)
32 PF00149 Metallophos: Calcineu 97.7 0.00014 3.1E-09 54.6 7.1 54 55-108 2-85 (200)
33 cd07397 MPP_DevT Myxococcus xa 97.7 0.00021 4.6E-09 62.3 8.9 42 112-153 119-160 (238)
34 cd00841 MPP_YfcE Escherichia c 97.5 0.00033 7.2E-09 55.5 6.8 47 55-101 1-59 (155)
35 COG0639 ApaH Diadenosine tetra 97.4 8.4E-05 1.8E-09 56.5 2.5 85 103-188 3-93 (155)
36 PF08321 PPP5: PPP5 TPR repeat 97.4 0.00023 4.9E-09 53.8 4.6 44 9-52 52-95 (95)
37 TIGR00040 yfcE phosphoesterase 96.8 0.0039 8.4E-08 49.8 6.7 45 55-100 2-63 (158)
38 PF12850 Metallophos_2: Calcin 96.8 0.0037 8E-08 48.7 6.0 45 55-102 2-61 (156)
39 KOG0376 Serine-threonine phosp 95.5 0.0043 9.4E-08 58.7 0.6 121 26-147 14-163 (476)
40 PRK09453 phosphodiesterase; Pr 95.4 0.025 5.5E-07 46.3 4.6 21 55-75 2-22 (182)
41 cd07379 MPP_239FB Homo sapiens 95.3 0.024 5.2E-07 44.1 4.0 10 91-100 53-62 (135)
42 cd00844 MPP_Dbr1_N Dbr1 RNA la 95.2 0.021 4.5E-07 50.4 3.8 17 56-72 1-17 (262)
43 cd07392 MPP_PAE1087 Pyrobaculu 94.9 0.041 8.9E-07 44.1 4.6 48 56-104 1-68 (188)
44 cd07394 MPP_Vps29 Homo sapiens 94.7 0.066 1.4E-06 44.2 5.3 11 90-100 54-64 (178)
45 cd00838 MPP_superfamily metall 93.7 0.15 3.2E-06 37.3 4.9 16 84-99 54-69 (131)
46 cd07388 MPP_Tt1561 Thermus the 92.9 0.16 3.4E-06 43.8 4.5 47 55-101 6-75 (224)
47 cd07391 MPP_PF1019 Pyrococcus 92.6 0.25 5.4E-06 40.1 5.1 70 24-101 18-88 (172)
48 cd07404 MPP_MS158 Microscilla 91.9 0.095 2.1E-06 41.9 1.8 16 86-101 53-68 (166)
49 cd07403 MPP_TTHA0053 Thermus t 91.8 0.2 4.4E-06 39.0 3.5 11 90-100 47-57 (129)
50 COG0622 Predicted phosphoester 91.0 0.6 1.3E-05 38.7 5.7 47 55-101 3-65 (172)
51 TIGR00024 SbcD_rel_arch putati 88.5 1.7 3.7E-05 37.4 6.8 61 25-101 36-102 (225)
52 cd07385 MPP_YkuE_C Bacillus su 87.5 0.69 1.5E-05 38.3 3.7 16 87-102 62-77 (223)
53 cd07380 MPP_CWF19_N Schizosacc 85.2 1.1 2.4E-05 36.3 3.6 19 85-103 54-72 (150)
54 TIGR03729 acc_ester putative p 80.6 2.8 6.2E-05 35.6 4.6 39 56-101 36-74 (239)
55 TIGR00619 sbcd exonuclease Sbc 77.2 5.3 0.00012 34.6 5.3 64 31-102 23-89 (253)
56 PRK05340 UDP-2,3-diacylglucosa 76.2 3.7 8.1E-05 35.0 4.0 13 89-101 71-83 (241)
57 PRK11340 phosphodiesterase Yae 75.0 4.8 0.0001 35.1 4.5 13 89-101 113-125 (271)
58 TIGR01854 lipid_A_lpxH UDP-2,3 73.9 7.1 0.00015 33.1 5.1 14 88-101 68-81 (231)
59 PF13258 DUF4049: Domain of un 72.0 15 0.00032 32.6 6.6 107 31-149 59-183 (318)
60 cd07400 MPP_YydB Bacillus subt 67.4 7.2 0.00016 29.9 3.5 38 55-100 38-80 (144)
61 cd07390 MPP_AQ1575 Aquifex aeo 67.4 6.9 0.00015 31.5 3.5 38 54-102 44-83 (168)
62 cd07384 MPP_Cdc1_like Saccharo 65.8 7.7 0.00017 31.6 3.5 14 88-101 87-100 (171)
63 cd00840 MPP_Mre11_N Mre11 nucl 65.4 16 0.00035 29.8 5.4 65 29-104 23-92 (223)
64 cd07393 MPP_DR1119 Deinococcus 64.7 8.6 0.00019 32.7 3.7 37 56-100 45-83 (232)
65 cd07396 MPP_Nbla03831 Homo sap 64.5 20 0.00044 30.9 6.1 59 32-103 25-88 (267)
66 cd07402 MPP_GpdQ Enterobacter 61.1 11 0.00023 31.5 3.6 38 56-101 44-83 (240)
67 PRK11148 cyclic 3',5'-adenosin 60.9 12 0.00027 32.4 4.1 38 56-101 59-98 (275)
68 PRK04036 DNA polymerase II sma 59.7 23 0.0005 34.1 6.0 17 86-102 328-344 (504)
69 cd00845 MPP_UshA_N_like Escher 59.6 15 0.00033 31.0 4.4 8 94-101 75-82 (252)
70 cd07395 MPP_CSTP1 Homo sapiens 57.7 26 0.00056 29.9 5.5 14 88-101 86-99 (262)
71 COG2908 Uncharacterized protei 57.5 17 0.00037 31.9 4.3 46 87-149 66-114 (237)
72 COG4186 Predicted phosphoester 56.5 19 0.00041 30.1 4.1 50 42-102 35-87 (186)
73 cd07386 MPP_DNA_pol_II_small_a 54.2 18 0.00038 30.8 3.9 18 85-102 78-95 (243)
74 PRK10966 exonuclease subunit S 53.9 28 0.00061 32.5 5.4 14 89-102 75-88 (407)
75 cd00842 MPP_ASMase acid sphing 52.2 68 0.0015 27.9 7.3 69 33-104 52-125 (296)
76 PF07521 RMMBL: RNA-metabolisi 51.5 16 0.00034 23.1 2.4 27 63-99 17-43 (43)
77 cd08165 MPP_MPPE1 human MPPE1 49.5 17 0.00037 29.1 2.9 13 89-101 77-89 (156)
78 cd08166 MPP_Cdc1_like_1 unchar 48.1 26 0.00057 29.6 3.9 69 56-135 46-119 (195)
79 COG0420 SbcD DNA repair exonuc 46.5 60 0.0013 29.6 6.3 64 29-103 22-90 (390)
80 cd07399 MPP_YvnB Bacillus subt 45.2 72 0.0016 26.6 6.2 12 89-100 70-81 (214)
81 cd07412 MPP_YhcR_N Bacillus su 37.9 31 0.00067 30.4 2.9 9 93-101 80-88 (288)
82 cd00839 MPP_PAPs purple acid p 37.8 33 0.00072 29.5 3.1 14 89-102 69-82 (294)
83 COG1407 Predicted ICC-like pho 37.7 51 0.0011 28.8 4.2 12 90-101 99-110 (235)
84 cd07409 MPP_CD73_N CD73 ecto-5 34.0 40 0.00086 29.5 3.0 18 82-101 77-94 (281)
85 COG1768 Predicted phosphohydro 33.9 23 0.00051 30.3 1.4 16 86-101 71-86 (230)
86 PHA02546 47 endonuclease subun 33.5 97 0.0021 28.0 5.5 14 88-101 76-89 (340)
87 PF06874 FBPase_2: Firmicute f 32.9 35 0.00075 34.0 2.6 38 39-76 18-55 (640)
88 PF05413 Peptidase_C34: Putati 32.5 20 0.00043 26.5 0.7 12 88-99 77-88 (92)
89 cd07408 MPP_SA0022_N Staphyloc 29.3 76 0.0017 27.2 3.9 9 93-101 74-82 (257)
90 cd07383 MPP_Dcr2 Saccharomyces 29.3 60 0.0013 26.5 3.1 12 88-99 76-87 (199)
91 COG5526 Lysozyme family protei 28.8 76 0.0017 26.4 3.5 62 6-67 4-69 (191)
92 COG1409 Icc Predicted phosphoh 28.8 88 0.0019 26.2 4.2 43 56-104 37-81 (301)
93 cd07410 MPP_CpdB_N Escherichia 28.4 91 0.002 26.9 4.3 18 82-101 78-95 (277)
94 cd07378 MPP_ACP5 Homo sapiens 24.7 57 0.0012 27.8 2.3 13 89-101 71-83 (277)
95 cd07398 MPP_YbbF-LpxH Escheric 24.3 57 0.0012 26.6 2.1 16 86-101 67-82 (217)
96 cd07405 MPP_UshA_N Escherichia 24.1 1.3E+02 0.0029 26.3 4.6 16 84-101 72-87 (285)
97 PF04282 DUF438: Family of unk 24.0 1.5E+02 0.0032 21.2 3.9 39 6-45 26-64 (71)
98 cd07401 MPP_TMEM62_N Homo sapi 23.2 64 0.0014 27.8 2.3 16 87-102 75-90 (256)
99 cd08163 MPP_Cdc1 Saccharomyces 22.2 2.5E+02 0.0053 24.4 5.8 11 90-100 86-96 (257)
100 COG1408 Predicted phosphohydro 21.2 1.7E+02 0.0036 26.1 4.6 59 33-103 60-120 (284)
101 COG1311 HYS2 Archaeal DNA poly 20.7 81 0.0018 30.5 2.6 79 56-149 285-365 (481)
102 TIGR00583 mre11 DNA repair pro 20.2 1.7E+02 0.0037 27.5 4.6 13 90-102 112-124 (405)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-52 Score=359.16 Aligned_cols=179 Identities=53% Similarity=0.833 Sum_probs=171.2
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc--------------
Q 028167 13 DLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------------- 78 (212)
Q Consensus 13 ~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~-------------- 78 (212)
++|+.++++++++.+++.++..||.+++++|++|+|++.+++|++|||||||||+||+.+|++.|.
T Consensus 2 dldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t~YLFLGDyVD 81 (303)
T KOG0372|consen 2 DLDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPETNYLFLGDYVD 81 (303)
T ss_pred cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCCceEeecchhc
Confidence 689999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ----------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccCceEEEEcC
Q 028167 79 ----------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148 (212)
Q Consensus 79 ----------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~~~ilc~HG 148 (212)
+|+++|++||++++|+|||||+++++++||||+||.+|||+..+|+.+.++|++||+||++++++||+||
T Consensus 82 RG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kifCVHG 161 (303)
T KOG0372|consen 82 RGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIFCVHG 161 (303)
T ss_pred cccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEEEEcC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccchhhhhhhccCCCCCccccccccccceecCceeee
Q 028167 149 CPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVVGVSHLV 193 (212)
Q Consensus 149 G~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~~~~~~~ 193 (212)
|.+|++. ++++|+.++|.++-|..|.|||+||..|-.+.|..+
T Consensus 162 GlSP~i~--~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~ 204 (303)
T KOG0372|consen 162 GLSPSIQ--TLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGL 204 (303)
T ss_pred CCCcchh--hHHHHHHhhccccCCCCCcchheeccCcccCCCccc
Confidence 9888644 589999999999999999999999999988876544
No 2
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.8e-47 Score=341.99 Aligned_cols=184 Identities=29% Similarity=0.481 Sum_probs=172.8
Q ss_pred CCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc----------
Q 028167 9 DTTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK---------- 78 (212)
Q Consensus 9 ~~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~---------- 78 (212)
-++...+-+.+|+.+.+.++++.++.|+.++..+|++|++++++++|++|||||||||+||+++|+.+|.
T Consensus 43 ~gkP~~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t~YLFLG 122 (517)
T KOG0375|consen 43 TGKPRHDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANTRYLFLG 122 (517)
T ss_pred CCCcchHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccceeEeec
Confidence 4566789999999999999999999999999999999999999999999999999999999999999876
Q ss_pred --------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccCceEE
Q 028167 79 --------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSV 144 (212)
Q Consensus 79 --------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~~~il 144 (212)
+|++||+.||+.++|||||||++.++..+.|.+||+.|| ++++|+++.+.|++|||||+.++.++
T Consensus 123 DYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKY-se~vYdaCmesFd~LPLAAlmNqQfl 201 (517)
T KOG0375|consen 123 DYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMESFDCLPLAALMNQQFL 201 (517)
T ss_pred cccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhc-cHHHHHHHHHHhccchHHHHhcCceE
Confidence 899999999999999999999999999999999999999 68999999999999999999999999
Q ss_pred EEcCCCccccccccchhhhhhhccCCCCCccccccccccceecCceeeeee
Q 028167 145 CMVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVVGVSHLVVL 195 (212)
Q Consensus 145 c~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~~~~~~~~~ 195 (212)
|+|||++|.. .+++||++++||++||..|+||||||+.|+.+-|---.+
T Consensus 202 CVHGGlSPEi--~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~ 250 (517)
T KOG0375|consen 202 CVHGGLSPEI--HTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTS 250 (517)
T ss_pred EecCCCCccc--ccHHHHHhhhhccCCCccCcchhhhccChhhhccccccc
Confidence 9999977754 579999999999999999999999999999876644333
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-46 Score=318.70 Aligned_cols=176 Identities=49% Similarity=0.789 Sum_probs=168.0
Q ss_pred CccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc-----------
Q 028167 10 TTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK----------- 78 (212)
Q Consensus 10 ~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~----------- 78 (212)
++.++|+.|+..++++.+++.++..||+-++++|++|.+++++..|++|||||||||+||+++|+.+|.
T Consensus 2 ~~~d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~tnYiFmGD 81 (306)
T KOG0373|consen 2 RKMDLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDTNYIFMGD 81 (306)
T ss_pred CcCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCcceEEecc
Confidence 456899999999999999999999999999999999999999999999999999999999999998865
Q ss_pred -------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccCceEEE
Q 028167 79 -------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVC 145 (212)
Q Consensus 79 -------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~~~ilc 145 (212)
++++||.+||+++.|||||||++++.++||||+||..|||+...|+-+.++|+.|++||+++++++|
T Consensus 82 fVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~vLC 161 (306)
T KOG0373|consen 82 FVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKVLC 161 (306)
T ss_pred ccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccccccccchhhhhhhccCCCCCccccccccccceec
Q 028167 146 MVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVV 187 (212)
Q Consensus 146 ~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~ 187 (212)
+|||.+| +-.++|+|+-++|.++-|..|.+||++|+.|=+
T Consensus 162 VHGGLSP--dirtlDqir~i~R~qEiPh~G~fcDlmWSDPed 201 (306)
T KOG0373|consen 162 VHGGLSP--DIRTLDQIRLIERNQEIPHEGPFCDLMWSDPED 201 (306)
T ss_pred EcCCCCc--cceeHHHHHhHHhhccCCCCCCccceeccChhh
Confidence 9999655 567899999999999999999999999987743
No 4
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-44 Score=307.04 Aligned_cols=185 Identities=58% Similarity=0.862 Sum_probs=176.9
Q ss_pred CCCCCCCCCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc--
Q 028167 1 MGANSLSTDTTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-- 78 (212)
Q Consensus 1 ~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~-- 78 (212)
|.|..+++....+++..|+++.+++++++.++..+|+.|+++|++|.++.+++.|++||||+||||+||+++|+++|.
T Consensus 7 ~ra~~~~~~~i~~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~p 86 (319)
T KOG0371|consen 7 MRARILATALILDVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAP 86 (319)
T ss_pred ccccccccccccccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCC
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ----------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccc
Q 028167 79 ----------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLT 136 (212)
Q Consensus 79 ----------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPla 136 (212)
+++++|++||++|.+||||||++++.++||||+||.+|||+..+|..|.+.|+++|++
T Consensus 87 dtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~t 166 (319)
T KOG0371|consen 87 DTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLT 166 (319)
T ss_pred CcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchH
Confidence 8999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEcCCCccccccccchhhhhhhccCCCCCccccccccccceec
Q 028167 137 ALSQKYSVCMVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVV 187 (212)
Q Consensus 137 avi~~~ilc~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~ 187 (212)
|+++++++|.|||.+|+.+ +++.++.++|.++-|-.|.|||+||..|-+
T Consensus 167 ali~~~ifc~HGgLspsi~--tld~~r~~dr~~evphegpmcDlLwsdpdd 215 (319)
T KOG0371|consen 167 ALIESKIFCLHGGLSPSID--TLDLIRLLDRIQEVPHEGPMCDLLWSDPDD 215 (319)
T ss_pred hhhccceeeccCCcCcccc--hHHHHHHHHHhhcccCCCChhheeccCccc
Confidence 9999999999999877754 689999999999999999999999987643
No 5
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.2e-42 Score=308.04 Aligned_cols=177 Identities=38% Similarity=0.663 Sum_probs=161.3
Q ss_pred CccCHHHHHHHHhcCC----------CCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcC-c
Q 028167 10 TTTDLDEQISQLMQCK----------PLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGG-K 78 (212)
Q Consensus 10 ~~~~l~~~i~~~~~~~----------~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G-~ 78 (212)
....+++++.++.+.. .++++++.+||..+.++|.++|+++++++|++||||+||||.||+++|...| +
T Consensus 5 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~ 84 (331)
T KOG0374|consen 5 ASLDLDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSF 84 (331)
T ss_pred chhhHHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCC
Confidence 3455677777665532 4899999999999999999999999999999999999999999999999998 3
Q ss_pred ------------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccc
Q 028167 79 ------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFP 134 (212)
Q Consensus 79 ------------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LP 134 (212)
+++++|++||++|++||||||++.+|..|||++||.++|+...+|++|+++|++||
T Consensus 85 pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp 164 (331)
T KOG0374|consen 85 PPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLP 164 (331)
T ss_pred CCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999975689999999999999
Q ss_pred cccccCceEEEEcCCCccccccccchhhhhhhccCCCCCccccccccccceecC
Q 028167 135 LTALSQKYSVCMVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVVG 188 (212)
Q Consensus 135 laavi~~~ilc~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~~ 188 (212)
+||+++++++|+|||++|.. .++++|++|+|+.+.++.|+.|||+|..|-.+
T Consensus 165 ~~a~i~~kI~CmhGGlsp~l--~~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~ 216 (331)
T KOG0374|consen 165 LAALIDGKILCMHGGLSPHL--KSLDQIRAIPRPTDSPDKGLLCDLLWSDPDDD 216 (331)
T ss_pred hhheecceEEEecCCCChhh--cChHHHhhccCCcCCCccceeeeeeecCCCCC
Confidence 99999999999999977754 44899999999999999999999999988655
No 6
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=3.2e-41 Score=302.46 Aligned_cols=176 Identities=25% Similarity=0.388 Sum_probs=158.2
Q ss_pred CccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccC----ceeEeccCCCCHHHHHHHHHHcCc-------
Q 028167 10 TTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKS----PVTICGDIHGQFHDLAELFQIGGK------- 78 (212)
Q Consensus 10 ~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~----pi~VvGDiHG~~~dL~~if~~~G~------- 78 (212)
++.+++++|+++.+.+.++++++.+||++|+++|++||+++++++ |++|||||||||+||+++|+..|+
T Consensus 3 ~~~~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~ 82 (321)
T cd07420 3 TKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPY 82 (321)
T ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccceE
Confidence 556799999999999999999999999999999999999999975 899999999999999999987653
Q ss_pred ------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCC--hhhHHHHHhhhcccccccc
Q 028167 79 ------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGN--ANIWKIFTDLFDYFPLTAL 138 (212)
Q Consensus 79 ------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~--~~~~~~~~~~F~~LPlaav 138 (212)
+++++|+.||+++++||||||++.+|..|||++||..+|+. .++|+.++++|++||+||+
T Consensus 83 lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaai 162 (321)
T cd07420 83 VFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATI 162 (321)
T ss_pred EEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceEE
Confidence 88999999999999999999999999999999999999974 6899999999999999999
Q ss_pred cCceEEEEcCCCccccccccchhhhhhhccC-----CCCC----------------------ccccccccccceecC
Q 028167 139 SQKYSVCMVGCPLQLKLLIISGTLIVFKRFL-----MKGP----------------------CVICYGLTQMIDVVG 188 (212)
Q Consensus 139 i~~~ilc~HGG~~~~~~~~~~~~i~~i~R~~-----~p~~----------------------~gi~~dll~~~~~~~ 188 (212)
++++++|+|||+++ ..++++|++++|+. +|+. .++++|+||..|-..
T Consensus 163 i~~~i~cvHGGi~~---~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~ 236 (321)
T cd07420 163 IDNKILVVHGGISD---STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQ 236 (321)
T ss_pred EcCCEEEEeCCCCC---ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccC
Confidence 99999999999875 35789999999963 2332 157899999988653
No 7
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.3e-39 Score=288.11 Aligned_cols=174 Identities=59% Similarity=0.883 Sum_probs=163.0
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc--------------
Q 028167 13 DLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------------- 78 (212)
Q Consensus 13 ~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~-------------- 78 (212)
+++++++++.+.+.++++++.+||++|+++|++||+++++++|++|||||||||.+|.++|+..|.
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVD 80 (285)
T cd07415 1 DLDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVD 80 (285)
T ss_pred CHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECC
Confidence 378999999999999999999999999999999999999999999999999999999999987653
Q ss_pred ----------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccCceEEEEcC
Q 028167 79 ----------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148 (212)
Q Consensus 79 ----------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~~~ilc~HG 148 (212)
+++++|+.+|++++++|||||.+.++..|||++||..+||.+.+|+.++++|++||+||+++++++|+||
T Consensus 81 RG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~cvHg 160 (285)
T cd07415 81 RGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHG 160 (285)
T ss_pred CCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEEEEcC
Confidence 6889999999999999999999999999999999999998668999999999999999999999999999
Q ss_pred CCccccccccchhhhhhhccCCCCCccccccccccceecC
Q 028167 149 CPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVVG 188 (212)
Q Consensus 149 G~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~~ 188 (212)
|+++.. .++++|++++|+.+++..++++|++|..|...
T Consensus 161 Gi~p~~--~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~ 198 (285)
T cd07415 161 GLSPSI--DTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDI 198 (285)
T ss_pred CCCCCc--ccHHHhhcccCCCCCCCCCCccceEecCCCcc
Confidence 977653 46899999999999999999999999998754
No 8
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.9e-39 Score=289.25 Aligned_cols=173 Identities=47% Similarity=0.773 Sum_probs=162.3
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc--------------
Q 028167 13 DLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------------- 78 (212)
Q Consensus 13 ~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~-------------- 78 (212)
++|++++.+++.+.++++++.+||++|+++|++||+++++++|++|||||||||.+|.++|+..|.
T Consensus 2 ~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVD 81 (303)
T PTZ00239 2 DIDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVD 81 (303)
T ss_pred CHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcC
Confidence 589999999999999999999999999999999999999999999999999999999999986543
Q ss_pred ----------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccCceEEEEcC
Q 028167 79 ----------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148 (212)
Q Consensus 79 ----------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~~~ilc~HG 148 (212)
+++++|+.+|++++++|||||.+.++..|||++||..+||...+|+.++++|++||+||+++++++|+||
T Consensus 82 RG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~cvHg 161 (303)
T PTZ00239 82 RGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHG 161 (303)
T ss_pred CCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEEEEcC
Confidence 7889999999999999999999999999999999999998768999999999999999999999999999
Q ss_pred CCccccccccchhhhhhhccCCCCCccccccccccceec
Q 028167 149 CPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVV 187 (212)
Q Consensus 149 G~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~ 187 (212)
|+++. ..++++|++++|+.++|..+++||++|..|..
T Consensus 162 Gi~p~--~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~ 198 (303)
T PTZ00239 162 GLSPD--MRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEE 198 (303)
T ss_pred ccCcc--cccHhhhccccCCCCCCCCCCceeeEecCccc
Confidence 97764 45789999999999999999999999999863
No 9
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=5.5e-39 Score=287.74 Aligned_cols=182 Identities=25% Similarity=0.413 Sum_probs=167.6
Q ss_pred CCCCCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccCc----eeEeccCCCCHHHHHHHHHHcCc--
Q 028167 5 SLSTDTTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSP----VTICGDIHGQFHDLAELFQIGGK-- 78 (212)
Q Consensus 5 ~~~~~~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~p----i~VvGDiHG~~~dL~~if~~~G~-- 78 (212)
+.++.+...++++++++++++.++++++.+||++|.++|++||++++++.| ++|||||||||.+|.++|+..|+
T Consensus 7 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~~g~~~ 86 (316)
T cd07417 7 EDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPS 86 (316)
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHhcCCCC
Confidence 456678888999999999999999999999999999999999999999877 99999999999999999987653
Q ss_pred -----------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhccccc
Q 028167 79 -----------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPL 135 (212)
Q Consensus 79 -----------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPl 135 (212)
+++++|+.+|++++++|||||++.++..|||.+|+..+|+ .++|+.+.++|++||+
T Consensus 87 ~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~-~~l~~~~~~~f~~LPl 165 (316)
T cd07417 87 ETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN-EQMFDLFSEVFNWLPL 165 (316)
T ss_pred ccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc-HHHHHHHHHHHHhchH
Confidence 7889999999999999999999999999999999999995 6899999999999999
Q ss_pred ccccCceEEEEcCCCccccccccchhhhhhhccCCCCCccccccccccceecC
Q 028167 136 TALSQKYSVCMVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVVG 188 (212)
Q Consensus 136 aavi~~~ilc~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~~ 188 (212)
||+++++++|+|||+++. ...+++++++++|+.++++.+++||+||..|...
T Consensus 166 aaii~~~~~~vHgGi~~~-~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~ 217 (316)
T cd07417 166 AHLINGKVLVVHGGLFSD-DGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQ 217 (316)
T ss_pred hheeCCeEEEEccccccC-CCccHHHhhcccCCCCCCccccceeeeecCCCCC
Confidence 999999999999997442 4567999999999999999999999999988754
No 10
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=9.2e-39 Score=285.04 Aligned_cols=174 Identities=33% Similarity=0.546 Sum_probs=162.9
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc--------------
Q 028167 13 DLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-------------- 78 (212)
Q Consensus 13 ~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~-------------- 78 (212)
+++.|++++.+++.++++++.+||++|+++|++||+++++++|++|||||||||.||.++|+..|.
T Consensus 2 ~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVD 81 (305)
T cd07416 2 RIDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVD 81 (305)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccC
Confidence 578999999999999999999999999999999999999999999999999999999999987663
Q ss_pred ----------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccCceEEEEcC
Q 028167 79 ----------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVG 148 (212)
Q Consensus 79 ----------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~~~ilc~HG 148 (212)
+++++|+.+|+++++||||||++.++..|||..|+..+|+ .++|..++++|++||+||+++++++|+||
T Consensus 82 RG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~-~~l~~~~~~~f~~LPlaaii~~~i~~vHG 160 (305)
T cd07416 82 RGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS-ERVYDACMEAFDCLPLAALMNQQFLCVHG 160 (305)
T ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc-HHHHHHHHHHHhhccceeEEcCCEEEEcC
Confidence 7889999999999999999999999999999999999995 68999999999999999999999999999
Q ss_pred CCccccccccchhhhhhhccCCCCCccccccccccceecCc
Q 028167 149 CPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVVGV 189 (212)
Q Consensus 149 G~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~~~ 189 (212)
|+++. ..++++|++++|+.+++..+++||++|..|....
T Consensus 161 Gi~p~--~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~ 199 (305)
T cd07416 161 GLSPE--LKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDF 199 (305)
T ss_pred CCCcc--cccHHHhcccCCCCCCCCCCcceeeeecCccccc
Confidence 97764 3568999999999999999999999999997643
No 11
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=9.2e-39 Score=286.45 Aligned_cols=176 Identities=36% Similarity=0.660 Sum_probs=162.3
Q ss_pred CCccCHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc--
Q 028167 9 DTTTDLDEQISQLMQCK--------PLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK-- 78 (212)
Q Consensus 9 ~~~~~l~~~i~~~~~~~--------~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~-- 78 (212)
.+..+++++|+++.+.+ .++++++.+||++|.++|++||+++++++|++|||||||||.+|.++|+..|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~ 85 (320)
T PTZ00480 6 KGEIDVDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPP 85 (320)
T ss_pred ccCcCHHHHHHHHHhccccCccccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCC
Confidence 34556999999998765 58999999999999999999999999999999999999999999999987653
Q ss_pred ----------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccc
Q 028167 79 ----------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLT 136 (212)
Q Consensus 79 ----------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPla 136 (212)
+++++|+.+|++++++|||||...++..|||+.||..+|+ .++|..++++|++||+|
T Consensus 86 ~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~-~~l~~~~~~~F~~LPla 164 (320)
T PTZ00480 86 ESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT-IKLWKTFTDCFNCLPVA 164 (320)
T ss_pred cceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC-HHHHHHHHHHHHhccHh
Confidence 7789999999999999999999999999999999999995 68999999999999999
Q ss_pred cccCceEEEEcCCCccccccccchhhhhhhccCCCCCccccccccccceec
Q 028167 137 ALSQKYSVCMVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVV 187 (212)
Q Consensus 137 avi~~~ilc~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~ 187 (212)
|+++++++|+|||+++. ..++++|++++|+.+.++.+++||+||..|..
T Consensus 165 AiI~~~i~cvHGGI~p~--~~~l~~i~~i~rp~~~~~~~~~~dllWSDP~~ 213 (320)
T PTZ00480 165 ALIDEKILCMHGGLSPE--LSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDK 213 (320)
T ss_pred heecCcEEEEcCCcCcc--cCCHHHHhcccCCCCCCccchhhheeecCccc
Confidence 99999999999998764 34689999999999999999999999998864
No 12
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.3e-37 Score=276.43 Aligned_cols=172 Identities=28% Similarity=0.499 Sum_probs=157.7
Q ss_pred CHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc------
Q 028167 13 DLDEQISQLMQCK--------PLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK------ 78 (212)
Q Consensus 13 ~l~~~i~~~~~~~--------~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~------ 78 (212)
-+|++|+++.+.. .++++++.+||++|.++|++||+++++++|++|||||||||.+|.++|+..|.
T Consensus 3 ~~~~~i~~~~~~~~~~~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~~~~ 82 (294)
T PTZ00244 3 LVQTLIEKMLTVKGNRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYSNY 82 (294)
T ss_pred hHHHHHHHHHhcccCCCccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCcccE
Confidence 3677888877754 68999999999999999999999999999999999999999999999986643
Q ss_pred ------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccC
Q 028167 79 ------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQ 140 (212)
Q Consensus 79 ------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~ 140 (212)
+++++|+.+|++++++|||||...++..|||++|+..+|+ .++|+.++++|++||+||+++
T Consensus 83 lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~-~~l~~~~~~~f~~lPlaaii~ 161 (294)
T PTZ00244 83 LFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN-IKLFKAFTDVFNTMPVCCVIS 161 (294)
T ss_pred EEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh-HHHHHHHHHHHHhCchheEec
Confidence 6789999999999999999999999999999999999996 689999999999999999999
Q ss_pred ceEEEEcCCCccccccccchhhhhhhccCCCCCccccccccccceec
Q 028167 141 KYSVCMVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVV 187 (212)
Q Consensus 141 ~~ilc~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~ 187 (212)
++++|+|||++|... ++++++.++|+.++++.++.||++|..|-.
T Consensus 162 ~~il~vHgGi~p~~~--~l~~i~~i~rp~~~~~~~~~~dllWsDP~~ 206 (294)
T PTZ00244 162 EKIICMHGGLSPDLT--SLASVNEIERPCDVPDRGILCDLLWADPED 206 (294)
T ss_pred CeeEEEcCCCCchhh--HHHHhhhhccccCCCccchhheeeecCccc
Confidence 999999999877543 589999999999999999999999999864
No 13
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.4e-37 Score=276.02 Aligned_cols=172 Identities=36% Similarity=0.672 Sum_probs=158.6
Q ss_pred CHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc------
Q 028167 13 DLDEQISQLMQCK--------PLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK------ 78 (212)
Q Consensus 13 ~l~~~i~~~~~~~--------~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~------ 78 (212)
++|++|+.+.+.. .++++++.+||++|+++|++||+++++++|+.|||||||||.+|.++|+..|.
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~~~ 80 (293)
T cd07414 1 DIDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNY 80 (293)
T ss_pred CHHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcceE
Confidence 3677888887655 69999999999999999999999999999999999999999999999987654
Q ss_pred ------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccC
Q 028167 79 ------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQ 140 (212)
Q Consensus 79 ------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~ 140 (212)
+++++|+.+|++++++|||||.+.++..|||++||..+|+ .++|..++++|++||+||+++
T Consensus 81 lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~-~~l~~~~~~~f~~lPlaa~i~ 159 (293)
T cd07414 81 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN-IKLWKTFTDCFNCLPVAAIID 159 (293)
T ss_pred EEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh-HHHHHHHHHHHHHhHHHHhhC
Confidence 7889999999999999999999999999999999999995 689999999999999999999
Q ss_pred ceEEEEcCCCccccccccchhhhhhhccCCCCCccccccccccceec
Q 028167 141 KYSVCMVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVV 187 (212)
Q Consensus 141 ~~ilc~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~ 187 (212)
++++|+|||+++. ..++++|++++|+.+.++.++++|++|..|-.
T Consensus 160 ~~i~cvHgGi~p~--~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~ 204 (293)
T cd07414 160 EKIFCMHGGLSPD--LQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDK 204 (293)
T ss_pred CcEEEEccCCCcc--cCcHHHHhcccCCCCCCchhhHhhhhccCccc
Confidence 9999999997764 35689999999999999999999999998864
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.4e-36 Score=277.14 Aligned_cols=181 Identities=28% Similarity=0.344 Sum_probs=159.4
Q ss_pred CCccCHHHHHHHHhcC----------CCCCHHHHHHHHHHHHHHHhhCCCccccc----CceeEeccCCCCHHHHHHHHH
Q 028167 9 DTTTDLDEQISQLMQC----------KPLSEPQVKALCEKAKEILMEESNVQPVK----SPVTICGDIHGQFHDLAELFQ 74 (212)
Q Consensus 9 ~~~~~l~~~i~~~~~~----------~~l~~~~~~~Ll~~a~~il~~ep~ll~i~----~pi~VvGDiHG~~~dL~~if~ 74 (212)
.+...++.||..++.. ..++.+++.+||++|+++|++||++++++ +|++||||||||+.+|+++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~ 86 (377)
T cd07418 7 LTNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLE 86 (377)
T ss_pred cCHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHH
Confidence 3556799999999776 34789999999999999999999999997 899999999999999999998
Q ss_pred HcCc-------------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCC--hhhHHHHH
Q 028167 75 IGGK-------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGN--ANIWKIFT 127 (212)
Q Consensus 75 ~~G~-------------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~--~~~~~~~~ 127 (212)
..|+ +++++|+.+|++++++|||||+..++..|||.+||..+|+. ..+|+.++
T Consensus 87 ~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~ 166 (377)
T cd07418 87 DAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCL 166 (377)
T ss_pred HhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHH
Confidence 6543 77899999999999999999999999999999999999975 37999999
Q ss_pred hhhcccccccccCceEEEEcCCCcc-------------------------ccccccchhhhhhhcc-CCCCCcc---ccc
Q 028167 128 DLFDYFPLTALSQKYSVCMVGCPLQ-------------------------LKLLIISGTLIVFKRF-LMKGPCV---ICY 178 (212)
Q Consensus 128 ~~F~~LPlaavi~~~ilc~HGG~~~-------------------------~~~~~~~~~i~~i~R~-~~p~~~g---i~~ 178 (212)
++|++||+||+++++++|+|||+++ +....++++|++++|+ .+|+..+ ++|
T Consensus 167 ~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~ 246 (377)
T cd07418 167 GCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPG 246 (377)
T ss_pred HHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccce
Confidence 9999999999999999999999854 2234578899999997 5787776 578
Q ss_pred cccccceecCc
Q 028167 179 GLTQMIDVVGV 189 (212)
Q Consensus 179 dll~~~~~~~~ 189 (212)
|+||..|....
T Consensus 247 dlLWSDP~~~~ 257 (377)
T cd07418 247 DVLWSDPSLTP 257 (377)
T ss_pred eeEeeCCccCC
Confidence 99999987543
No 15
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=9.5e-36 Score=261.67 Aligned_cols=157 Identities=41% Similarity=0.696 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcCc------------------------hhhh
Q 028167 27 LSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGGK------------------------LLVA 82 (212)
Q Consensus 27 l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G~------------------------ll~~ 82 (212)
++++++.+||++|.++|++||+++++++|++||||||||+.+|.++|+..|. ++++
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~ 80 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFA 80 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999986543 7789
Q ss_pred hhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccccCceEEEEcCCCccccccccchhh
Q 028167 83 LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVGCPLQLKLLIISGTL 162 (212)
Q Consensus 83 lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi~~~ilc~HGG~~~~~~~~~~~~i 162 (212)
+|+.+|++++++|||||.+.++..|||++|+..+|+ .++|+.+.++|++||+||+++++++|+|||+++. ..++++|
T Consensus 81 lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~-~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~--~~~l~~i 157 (271)
T smart00156 81 LKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG-EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD--LTTLDDI 157 (271)
T ss_pred HHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC-HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCc--cCCHHHH
Confidence 999999999999999999999999999999999996 6899999999999999999999999999997764 4678999
Q ss_pred hhhhccCCCCCcccccccccccee
Q 028167 163 IVFKRFLMKGPCVICYGLTQMIDV 186 (212)
Q Consensus 163 ~~i~R~~~p~~~gi~~dll~~~~~ 186 (212)
++++|+.+++..++++|++|..|.
T Consensus 158 ~~i~r~~~~~~~~~~~dllWsDP~ 181 (271)
T smart00156 158 RKLKRPQEPPDEGLLIDLLWSDPD 181 (271)
T ss_pred hcccCCCCCCchhhhhheeecCCC
Confidence 999999999999999999999884
No 16
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1.7e-33 Score=251.80 Aligned_cols=162 Identities=34% Similarity=0.598 Sum_probs=147.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHcC-------------------c-------
Q 028167 25 KPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIGG-------------------K------- 78 (212)
Q Consensus 25 ~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~G-------------------~------- 78 (212)
..++++++.+||++|.++|++||+++++++|++|||||||||.+|.++|+..| +
T Consensus 19 ~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~ 98 (311)
T cd07419 19 FFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSN 98 (311)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCC
Confidence 35889999999999999999999999999999999999999999999997653 1
Q ss_pred ------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCC-----hhhHHHHHhhhcccccccccCceEEEEc
Q 028167 79 ------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGN-----ANIWKIFTDLFDYFPLTALSQKYSVCMV 147 (212)
Q Consensus 79 ------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~-----~~~~~~~~~~F~~LPlaavi~~~ilc~H 147 (212)
+++++|+.+|++++++|||||.+.++..|||..||..+|+. ..+|..++++|++||++|+++++++|+|
T Consensus 99 s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l~vH 178 (311)
T cd07419 99 SLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMH 178 (311)
T ss_pred hHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEEEEc
Confidence 78889999999999999999999999999999999999974 3699999999999999999999999999
Q ss_pred CCCccccccccchhhhhhhccC-CCCCccccccccccceecC
Q 028167 148 GCPLQLKLLIISGTLIVFKRFL-MKGPCVICYGLTQMIDVVG 188 (212)
Q Consensus 148 GG~~~~~~~~~~~~i~~i~R~~-~p~~~gi~~dll~~~~~~~ 188 (212)
||+++.. .++++|+.++|+. +++..++++|++|..|...
T Consensus 179 gGi~p~~--~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~ 218 (311)
T cd07419 179 GGIGRSI--NHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTEN 218 (311)
T ss_pred cCCCCCC--CcHHHHhhcCCCCCCCCCCcceeeeeccCcccc
Confidence 9977753 4689999999997 6677889999999998754
No 17
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.97 E-value=9.4e-33 Score=254.89 Aligned_cols=180 Identities=26% Similarity=0.408 Sum_probs=166.0
Q ss_pred CCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccccC----ceeEeccCCCCHHHHHHHHHHcCc------
Q 028167 9 DTTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVKS----PVTICGDIHGQFHDLAELFQIGGK------ 78 (212)
Q Consensus 9 ~~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~----pi~VvGDiHG~~~dL~~if~~~G~------ 78 (212)
+++.++..+++.+..++.++...+-+|+..+..+++.+|+++++.. .++||||+||||+|++++|.+.|.
T Consensus 165 vt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ 244 (476)
T KOG0376|consen 165 VTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNP 244 (476)
T ss_pred hhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCccc
Confidence 4566788888999999999999999999999999999999999843 599999999999999999998765
Q ss_pred -------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhccccccccc
Q 028167 79 -------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTALS 139 (212)
Q Consensus 79 -------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaavi 139 (212)
.++++|+.+|+++|++|||||+..||+.|||.+|+..+|+ ++.+..+.++|.+||+|.++
T Consensus 245 ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyt-e~~~~~f~~~f~~LPl~~~i 323 (476)
T KOG0376|consen 245 YLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYT-EEMFNLFSEVFIWLPLAHLI 323 (476)
T ss_pred ccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhH-HHHHHhhhhhhccccchhhh
Confidence 7899999999999999999999999999999999999994 78999999999999999999
Q ss_pred CceEEEEcCCCccccccccchhhhhhhccCCCCCccccccccccceecCce
Q 028167 140 QKYSVCMVGCPLQLKLLIISGTLIVFKRFLMKGPCVICYGLTQMIDVVGVS 190 (212)
Q Consensus 140 ~~~ilc~HGG~~~~~~~~~~~~i~~i~R~~~p~~~gi~~dll~~~~~~~~~ 190 (212)
+++++++||| .|+.++++++|+++|.|+++|++.|+|||++|+.|-...|
T Consensus 324 ~~~~~~~hgg-lf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g 373 (476)
T KOG0376|consen 324 NNKVLVMHGG-LFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANG 373 (476)
T ss_pred cCceEEEecC-cCCCCCccHHHHHhhhhccCCcccccccccccCCCccccC
Confidence 9999999999 5667899999999999999999999999999998754433
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-29 Score=230.52 Aligned_cols=157 Identities=25% Similarity=0.423 Sum_probs=142.5
Q ss_pred CCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccc----cCceeEeccCCCCHHHHHHHHHHcCc------
Q 028167 9 DTTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPV----KSPVTICGDIHGQFHDLAELFQIGGK------ 78 (212)
Q Consensus 9 ~~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i----~~pi~VvGDiHG~~~dL~~if~~~G~------ 78 (212)
-++..++.|||-++..+.+++.+++.|+.+|+++|++.|++-++ ...++||||+||+++||+-+|-.+|.
T Consensus 116 l~~~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~np 195 (631)
T KOG0377|consen 116 LRKNHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLPSSSNP 195 (631)
T ss_pred cCchHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCCCCCCC
Confidence 35667999999999999999999999999999999999999888 34699999999999999998877664
Q ss_pred -------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCC--hhhHHHHHhhhccccccc
Q 028167 79 -------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGN--ANIWKIFTDLFDYFPLTA 137 (212)
Q Consensus 79 -------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~--~~~~~~~~~~F~~LPlaa 137 (212)
+|+++-+.||+.+||.|||||+..||-.|||.+|+..||.. ..+...+.++|.|||+|.
T Consensus 196 YvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~k~Ilr~leevy~WLPi~t 275 (631)
T KOG0377|consen 196 YVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHGKRILRFLEEVYRWLPIGT 275 (631)
T ss_pred eeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcccHHHHHHHHHHHhcchhh
Confidence 88999999999999999999999999999999999999963 578999999999999999
Q ss_pred ccCceEEEEcCCCccccccccchhhhhhhcc
Q 028167 138 LSQKYSVCMVGCPLQLKLLIISGTLIVFKRF 168 (212)
Q Consensus 138 vi~~~ilc~HGG~~~~~~~~~~~~i~~i~R~ 168 (212)
+++.+++++|||++.+ ..++-|.+|+|.
T Consensus 276 iid~~ilvvHGGiSd~---Tdl~ll~kIeR~ 303 (631)
T KOG0377|consen 276 IIDSRILVVHGGISDS---TDLDLLDKIERG 303 (631)
T ss_pred hcccceEEEecCcccc---hhHHHHhhhhcc
Confidence 9999999999997765 445667888877
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.64 E-value=5e-16 Score=130.50 Aligned_cols=96 Identities=42% Similarity=0.709 Sum_probs=75.3
Q ss_pred eEeccCCCCHHHHHHHHHHcCc------------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHH
Q 028167 57 TICGDIHGQFHDLAELFQIGGK------------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDE 112 (212)
Q Consensus 57 ~VvGDiHG~~~dL~~if~~~G~------------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e 112 (212)
+|||||||++.+|.++++..+. ++..++.. |.+++++|||||.+.++..+++..+
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~~ 79 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYDE 79 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcch
Confidence 5899999999999999986542 44445545 8899999999999988877666543
Q ss_pred H--------HHhhCChhhHHHHHhhhcccccccccCc-eEEEEcCCCccc
Q 028167 113 C--------LRKYGNANIWKIFTDLFDYFPLTALSQK-YSVCMVGCPLQL 153 (212)
Q Consensus 113 ~--------~~kyg~~~~~~~~~~~F~~LPlaavi~~-~ilc~HGG~~~~ 153 (212)
. ...+....++..+.++|..||+++.++. +++|+|||+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~ 129 (225)
T cd00144 80 DEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPG 129 (225)
T ss_pred hhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCc
Confidence 2 1222235688889999999999999876 999999997665
No 20
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.51 E-value=4.7e-14 Score=122.13 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=72.3
Q ss_pred ceeEeccCCCCHHHHHHHHHHcC--------------------c-----------hhhhhhhhcCCcEEEecccccccch
Q 028167 55 PVTICGDIHGQFHDLAELFQIGG--------------------K-----------LLVALKVRYPQRITILRGNHESRQI 103 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~G--------------------~-----------ll~~lKl~~P~~v~lLRGNHE~~~~ 103 (212)
++.||||||||++.|.++++..+ + +.+++++..+.+++++|||||.+.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE~~~l 81 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHCNKLY 81 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccHHHHH
Confidence 47899999999999999998632 1 4555666778899999999998866
Q ss_pred hhhcc-------cHHHHHHhhCC------hhhHHHHHhhhccccccccc-CceEEEEcCCCccc
Q 028167 104 TQVYG-------FYDECLRKYGN------ANIWKIFTDLFDYFPLTALS-QKYSVCMVGCPLQL 153 (212)
Q Consensus 104 n~~yg-------F~~e~~~kyg~------~~~~~~~~~~F~~LPlaavi-~~~ilc~HGG~~~~ 153 (212)
+...+ ...+....|.. .++++.+.++|+.||++..+ .++++++|||+.+.
T Consensus 82 ~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~ 145 (245)
T PRK13625 82 RFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQD 145 (245)
T ss_pred HHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChH
Confidence 53321 11222333321 24678899999999999876 46799999997664
No 21
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.40 E-value=6.9e-13 Score=113.75 Aligned_cols=98 Identities=18% Similarity=0.323 Sum_probs=70.6
Q ss_pred ceeEeccCCCCHHHHHHHHHHc---------------------Cc-----------hhhhhhhhcCCcEEEecccccccc
Q 028167 55 PVTICGDIHGQFHDLAELFQIG---------------------GK-----------LLVALKVRYPQRITILRGNHESRQ 102 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~---------------------G~-----------ll~~lKl~~P~~v~lLRGNHE~~~ 102 (212)
++.||||||||+..|.++++.. |+ +.+..++..+.+++++|||||.+.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE~~l 81 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHDNKL 81 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcHHHH
Confidence 6899999999999999999764 11 444444545678999999999976
Q ss_pred hhhh--------cccHHHHHHhhC--ChhhHHHHHhhhcccccccccC-ceEEEEcCCCccc
Q 028167 103 ITQV--------YGFYDECLRKYG--NANIWKIFTDLFDYFPLTALSQ-KYSVCMVGCPLQL 153 (212)
Q Consensus 103 ~n~~--------ygF~~e~~~kyg--~~~~~~~~~~~F~~LPlaavi~-~~ilc~HGG~~~~ 153 (212)
++.. +|+. +....|. ..++.+.+.++|+.||+...++ ++++|+|||+++.
T Consensus 82 ~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 82 YRKLQGRNVKITHGLE-ETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHhcCCCccccCccc-chHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 6532 2232 2223332 2356788899999999998764 5799999996553
No 22
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.34 E-value=3.6e-12 Score=107.24 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=69.8
Q ss_pred ceeEeccCCCCHHHHHHHHHHcC------------c-------hhhhhhhhcCCcEEEecccccccchhhhcc--cHHHH
Q 028167 55 PVTICGDIHGQFHDLAELFQIGG------------K-------LLVALKVRYPQRITILRGNHESRQITQVYG--FYDEC 113 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~G------------~-------ll~~lKl~~P~~v~lLRGNHE~~~~n~~yg--F~~e~ 113 (212)
++.|+|||||++..|.++++..+ + -.-+++.....+++++|||||.+.+....+ +..+.
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~~~~~~v~GNhe~~~~~~~~~~~~~~~~ 81 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLEPWFHAVRGNHEQMAIDALRAEPLDAVR 81 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhcCCEEEeECCChHHHHhHhhCCCcchhH
Confidence 68999999999999999987542 1 122233333357899999999998876544 33344
Q ss_pred HHhhCC--------hhhHHHHHhhhcccccccccC---ceEEEEcCCCccc
Q 028167 114 LRKYGN--------ANIWKIFTDLFDYFPLTALSQ---KYSVCMVGCPLQL 153 (212)
Q Consensus 114 ~~kyg~--------~~~~~~~~~~F~~LPlaavi~---~~ilc~HGG~~~~ 153 (212)
+.++|. .+.++.+.++++.||+...++ ++++++|||+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~ 132 (207)
T cd07424 82 WLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSD 132 (207)
T ss_pred HHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcc
Confidence 444442 125667889999999999753 5799999996543
No 23
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.32 E-value=3.9e-12 Score=111.47 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=67.4
Q ss_pred eeEeccCCCCHHHHHHHHHHcCc-----------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHH
Q 028167 56 VTICGDIHGQFHDLAELFQIGGK-----------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDE 112 (212)
Q Consensus 56 i~VvGDiHG~~~dL~~if~~~G~-----------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e 112 (212)
++|||||||++..|.++++..++ +-++.++. .+++.+|||||...++..+++...
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~--~~v~~VlGNHD~~ll~~~~g~~~~ 78 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG--DSAKTVLGNHDLHLLAVAAGIKKP 78 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC--CCeEEEcCCchHHHHHHhcCcccc
Confidence 47999999999999999987542 22222222 689999999999887766664311
Q ss_pred ----HHHhhCChhhHHHHHhhhcccccccccCc-eEEEEcCCCccc
Q 028167 113 ----CLRKYGNANIWKIFTDLFDYFPLTALSQK-YSVCMVGCPLQL 153 (212)
Q Consensus 113 ----~~~kyg~~~~~~~~~~~F~~LPlaavi~~-~ilc~HGG~~~~ 153 (212)
....+-.....+.+.+++..+|++..+++ +++++|||++|.
T Consensus 79 ~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~ 124 (257)
T cd07422 79 KKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQ 124 (257)
T ss_pred ccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCCCCC
Confidence 11111112234568899999999998764 789999997764
No 24
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.27 E-value=1.4e-11 Score=109.19 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=69.5
Q ss_pred ceeEeccCCCCHHHHHHHHHHcCc----------------------hhhhhhhhcCCcEEEecccccccchhhhcccH--
Q 028167 55 PVTICGDIHGQFHDLAELFQIGGK----------------------LLVALKVRYPQRITILRGNHESRQITQVYGFY-- 110 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~G~----------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~-- 110 (212)
.++||||||||++.|.++++..++ .+-.++ ..++++++++||||...++..+|+.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~-~l~~~~~~VlGNHD~~lL~~~~g~~~~ 80 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVK-SLGDAVRLVLGNHDLHLLAVFAGISRN 80 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHH-hcCCCeEEEEChhHHHHHHHhcCCCcc
Confidence 479999999999999999987642 111121 2346788999999998888777652
Q ss_pred ---HHHHHhhCChhhHHHHHhhhccccccccc-CceEEEEcCCCccc
Q 028167 111 ---DECLRKYGNANIWKIFTDLFDYFPLTALS-QKYSVCMVGCPLQL 153 (212)
Q Consensus 111 ---~e~~~kyg~~~~~~~~~~~F~~LPlaavi-~~~ilc~HGG~~~~ 153 (212)
+....-+ ..+..+.+.++...+|+.... +..++++|||++|.
T Consensus 81 ~~~d~l~~~l-~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~ 126 (279)
T TIGR00668 81 KPKDRLDPLL-EAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQ 126 (279)
T ss_pred CchHHHHHHH-HccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCC
Confidence 2222222 234567789999999999865 34688889998775
No 25
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.24 E-value=2.4e-11 Score=107.39 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=67.7
Q ss_pred ceeEeccCCCCHHHHHHHHHHcCc-----------------------hhhhhhhhcCCcEEEecccccccchhhhcccHH
Q 028167 55 PVTICGDIHGQFHDLAELFQIGGK-----------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYD 111 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~G~-----------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~ 111 (212)
.++|||||||++..|.++++..++ +-+..++ +.+++.+|||||...++..+|+..
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l--~~~~~~VlGNHD~~ll~~~~g~~~ 79 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL--GDSAVTVLGNHDLHLLAVAAGIKR 79 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc--CCCeEEEecChhHHHHHhhcCCcc
Confidence 378999999999999999986531 2222222 567999999999987776666431
Q ss_pred ----HHHHhhCChhhHHHHHhhhccccccccc-CceEEEEcCCCccc
Q 028167 112 ----ECLRKYGNANIWKIFTDLFDYFPLTALS-QKYSVCMVGCPLQL 153 (212)
Q Consensus 112 ----e~~~kyg~~~~~~~~~~~F~~LPlaavi-~~~ilc~HGG~~~~ 153 (212)
+....+-.....+.+.+++..+|+...+ +++++++|||++|.
T Consensus 80 ~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~ 126 (275)
T PRK00166 80 NKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQ 126 (275)
T ss_pred ccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCC
Confidence 1111111123456688999999998875 66788999997664
No 26
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.22 E-value=4e-11 Score=102.51 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=66.1
Q ss_pred eEeccCCCCHHHHHHHHHHcC-------------------c-----------hhhhhhhhcCCcEEEecccccccchhhh
Q 028167 57 TICGDIHGQFHDLAELFQIGG-------------------K-----------LLVALKVRYPQRITILRGNHESRQITQV 106 (212)
Q Consensus 57 ~VvGDiHG~~~dL~~if~~~G-------------------~-----------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ 106 (212)
.||||||||++.|.++++..+ + +.+++++..+.+++++|||||.+.+...
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~ll~~~ 81 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFNAIAWH 81 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHHHHHhh
Confidence 689999999999999987642 1 4555666667789999999998876422
Q ss_pred cc------c-----------HHHHHHhhC-ChhhHHHHHhhhcccccccccCceEEEEcCCCc
Q 028167 107 YG------F-----------YDECLRKYG-NANIWKIFTDLFDYFPLTALSQKYSVCMVGCPL 151 (212)
Q Consensus 107 yg------F-----------~~e~~~kyg-~~~~~~~~~~~F~~LPlaavi~~~ilc~HGG~~ 151 (212)
.+ + ..+..+.|+ ..+.++...+++..||+....+ .++++|||+.
T Consensus 82 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~~ 143 (222)
T cd07413 82 TKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLG-GVRVVHACWD 143 (222)
T ss_pred hCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEEC-CEEEEECCcC
Confidence 11 0 012333343 2356788899999999998664 5666788743
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.16 E-value=7.7e-11 Score=100.25 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=63.5
Q ss_pred CceeEeccCCCCHHHHHHHHHHcCc-------------------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHH
Q 028167 54 SPVTICGDIHGQFHDLAELFQIGGK-------------------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114 (212)
Q Consensus 54 ~pi~VvGDiHG~~~dL~~if~~~G~-------------------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~ 114 (212)
.+++|||||||++..|.++++..+. -.-++.+..-.+++.+|||||.+.++...+-....+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~~~~~v~GNHE~~~l~~~~~~~~~~w 96 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEHWVRAVRGNHEQMALDALASQQMSLW 96 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcCCceEeeCchHHHHHHHHHCCccchh
Confidence 3899999999999999999987532 122222223356889999999887763321100111
Q ss_pred HhhC--------C--hhhHHHHHhhhccccccccc---CceEEEEcCCC
Q 028167 115 RKYG--------N--ANIWKIFTDLFDYFPLTALS---QKYSVCMVGCP 150 (212)
Q Consensus 115 ~kyg--------~--~~~~~~~~~~F~~LPlaavi---~~~ilc~HGG~ 150 (212)
...| . .+.+....++++.||+...+ +++++++|||+
T Consensus 97 ~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~ 145 (218)
T PRK11439 97 LMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADY 145 (218)
T ss_pred hhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCC
Confidence 1111 1 13455667899999999764 45688889885
No 28
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.07 E-value=2.7e-10 Score=96.59 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=61.7
Q ss_pred eEeccCCCCHHHHHHHHHHcC-------------------c-------------hhhhhhh---hcCCcEEEeccccccc
Q 028167 57 TICGDIHGQFHDLAELFQIGG-------------------K-------------LLVALKV---RYPQRITILRGNHESR 101 (212)
Q Consensus 57 ~VvGDiHG~~~dL~~if~~~G-------------------~-------------ll~~lKl---~~P~~v~lLRGNHE~~ 101 (212)
+|||||||+++.|.++++..+ + ++..++. ..+.+++.+|||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 589999999999999997643 1 3333332 2467899999999999
Q ss_pred chhhhcccH--HHHHHhhC----Chhh---HHHHHhhhcccccccccCceEEEEcCCCcc
Q 028167 102 QITQVYGFY--DECLRKYG----NANI---WKIFTDLFDYFPLTALSQKYSVCMVGCPLQ 152 (212)
Q Consensus 102 ~~n~~ygF~--~e~~~kyg----~~~~---~~~~~~~F~~LPlaavi~~~ilc~HGG~~~ 152 (212)
.++..+.+. .+...... .... -..+.+++..+|+...+++ ++++|||+.+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~~-~~fvHag~~~ 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVND-TLFVHGGLGP 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEECC-EEEEeCCcHH
Confidence 887443321 11111000 0111 1245788999999998875 5567888644
No 29
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.01 E-value=1.2e-09 Score=93.15 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=61.6
Q ss_pred CceeEeccCCCCHHHHHHHHHHcC------------c-------hhhhhhhhcCCcEEEecccccccchhhhcccHHHHH
Q 028167 54 SPVTICGDIHGQFHDLAELFQIGG------------K-------LLVALKVRYPQRITILRGNHESRQITQVYGFYDECL 114 (212)
Q Consensus 54 ~pi~VvGDiHG~~~dL~~if~~~G------------~-------ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~ 114 (212)
.++.|+|||||++..|.++++... + -.-++.+..-.+++.+|||||.+.+....+-....+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~~~~~~v~GNHE~~~~~~~~~~~~~~~ 94 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQPWFISVKGNHEAMALDAFETGDGNMW 94 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhhCCcEEEECchHHHHHHHHhcCChhHH
Confidence 489999999999999999987653 1 122233333357899999999987653211000111
Q ss_pred HhhCC----------hhhHHHHHhhhccccccccc---CceEEEEcCCC
Q 028167 115 RKYGN----------ANIWKIFTDLFDYFPLTALS---QKYSVCMVGCP 150 (212)
Q Consensus 115 ~kyg~----------~~~~~~~~~~F~~LPlaavi---~~~ilc~HGG~ 150 (212)
...|. ........+++..||+...+ +++++++|||+
T Consensus 95 ~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~ 143 (218)
T PRK09968 95 LASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADY 143 (218)
T ss_pred HHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCC
Confidence 11111 11333456689999999864 35688889885
No 30
>PHA02239 putative protein phosphatase
Probab=99.00 E-value=1.2e-09 Score=94.51 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=62.0
Q ss_pred ceeEeccCCCCHHHHHHHHHHc-------------Cc-----------hhhhhhh-hcCCcEEEecccccccchhhhcc-
Q 028167 55 PVTICGDIHGQFHDLAELFQIG-------------GK-----------LLVALKV-RYPQRITILRGNHESRQITQVYG- 108 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~-------------G~-----------ll~~lKl-~~P~~v~lLRGNHE~~~~n~~yg- 108 (212)
++++||||||++..|.++++.. |+ +..++++ ..+.+++.++||||.+.+....+
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~~l~~~~~~ 81 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDEFYNIMENV 81 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhCc
Confidence 4789999999999999988654 11 2333333 34678999999999885542110
Q ss_pred ----c---------HHHHHHhhCC------------------------------hhhHHHHHhhhcccccccccCceEEE
Q 028167 109 ----F---------YDECLRKYGN------------------------------ANIWKIFTDLFDYFPLTALSQKYSVC 145 (212)
Q Consensus 109 ----F---------~~e~~~kyg~------------------------------~~~~~~~~~~F~~LPlaavi~~~ilc 145 (212)
. -.+....||. ...+..+.++.+.||+....++ +++
T Consensus 82 ~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~~-~if 160 (235)
T PHA02239 82 DRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKEDK-YIF 160 (235)
T ss_pred hhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEECC-EEE
Confidence 0 0233445541 0133455668889999997655 555
Q ss_pred EcCCCccc
Q 028167 146 MVGCPLQL 153 (212)
Q Consensus 146 ~HGG~~~~ 153 (212)
+|+|+.|.
T Consensus 161 VHAGi~p~ 168 (235)
T PHA02239 161 SHSGGVSW 168 (235)
T ss_pred EeCCCCCC
Confidence 66665543
No 31
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=98.93 E-value=3e-09 Score=95.03 Aligned_cols=50 Identities=34% Similarity=0.517 Sum_probs=39.5
Q ss_pred ceeEeccCCCCHHHHHHHHHHc-----------------Cc-------------hhhhhhhhcCC-cEEEecccccccch
Q 028167 55 PVTICGDIHGQFHDLAELFQIG-----------------GK-------------LLVALKVRYPQ-RITILRGNHESRQI 103 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~-----------------G~-------------ll~~lKl~~P~-~v~lLRGNHE~~~~ 103 (212)
.+++||||||+++.|.++++.. |+ ++..++..+|. .+++||||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 5899999999999999987632 11 66677777776 68899999997754
Q ss_pred h
Q 028167 104 T 104 (212)
Q Consensus 104 n 104 (212)
.
T Consensus 83 ~ 83 (304)
T cd07421 83 A 83 (304)
T ss_pred h
Confidence 3
No 32
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=97.71 E-value=0.00014 Score=54.61 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=37.8
Q ss_pred ceeEeccCCCCHHHH---HHHHHH------------cCc-------------h--hhhhhhhcCCcEEEecccccccchh
Q 028167 55 PVTICGDIHGQFHDL---AELFQI------------GGK-------------L--LVALKVRYPQRITILRGNHESRQIT 104 (212)
Q Consensus 55 pi~VvGDiHG~~~dL---~~if~~------------~G~-------------l--l~~lKl~~P~~v~lLRGNHE~~~~n 104 (212)
++.++||+||..... .+.+.. .|+ . ....+...+..+++++||||....+
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~ 81 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN 81 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence 478999999999987 333221 133 1 2456788899999999999999876
Q ss_pred hhcc
Q 028167 105 QVYG 108 (212)
Q Consensus 105 ~~yg 108 (212)
..+.
T Consensus 82 ~~~~ 85 (200)
T PF00149_consen 82 SFYG 85 (200)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5443
No 33
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.70 E-value=0.00021 Score=62.26 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=33.8
Q ss_pred HHHHhhCChhhHHHHHhhhcccccccccCceEEEEcCCCccc
Q 028167 112 ECLRKYGNANIWKIFTDLFDYFPLTALSQKYSVCMVGCPLQL 153 (212)
Q Consensus 112 e~~~kyg~~~~~~~~~~~F~~LPlaavi~~~ilc~HGG~~~~ 153 (212)
++++.||...+.+++..++++++.+.-....|++.|+++...
T Consensus 119 ~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 119 AVKAVYGVISLEESAQRIIAAAKKAPPDLPLILLAHNGPSGL 160 (238)
T ss_pred HHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEEEeCcCCcCC
Confidence 688888767788999999999985555667899999986443
No 34
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=97.51 E-value=0.00033 Score=55.47 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=31.9
Q ss_pred ceeEeccCCCCHHHHHHHHHHcC---------chhh---hhhhhcCCcEEEeccccccc
Q 028167 55 PVTICGDIHGQFHDLAELFQIGG---------KLLV---ALKVRYPQRITILRGNHESR 101 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~G---------~ll~---~lKl~~P~~v~lLRGNHE~~ 101 (212)
++.+++|+||+...+.++++... ++.. .-+......++.++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGDVDLIIHAGDVLYPGPLNELELKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcCCCEEEECCccccccccchhhcCCcEEEEeCCCCCc
Confidence 36799999999988888777543 2110 01133445699999999975
No 35
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=97.44 E-value=8.4e-05 Score=56.52 Aligned_cols=85 Identities=29% Similarity=0.346 Sum_probs=68.0
Q ss_pred hhhhcccHHHHHHhhCChhhHHH---HHhhhcccccccccCc-eEEEEcCCCccccccccchhhhhhhccC--CCCCccc
Q 028167 103 ITQVYGFYDECLRKYGNANIWKI---FTDLFDYFPLTALSQK-YSVCMVGCPLQLKLLIISGTLIVFKRFL--MKGPCVI 176 (212)
Q Consensus 103 ~n~~ygF~~e~~~kyg~~~~~~~---~~~~F~~LPlaavi~~-~ilc~HGG~~~~~~~~~~~~i~~i~R~~--~p~~~gi 176 (212)
++..+++++++..+++....|.. +.++|+.+|++++.++ ..+|+||+.++. .....+++..+.|.+ ....+|.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~g~ 81 (155)
T COG0639 3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPG-LDRLLDIIEVLDRLRACEVPHAGH 81 (155)
T ss_pred hhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcc-hhhhHHHHHHHhhhhcccCCCccc
Confidence 45678899998888864335766 9999999999999988 999999986664 335677888899888 8999999
Q ss_pred cccccccceecC
Q 028167 177 CYGLTQMIDVVG 188 (212)
Q Consensus 177 ~~dll~~~~~~~ 188 (212)
++++++..+-.|
T Consensus 82 ~~~~~~~~~~~~ 93 (155)
T COG0639 82 THDLLWSDPDGG 93 (155)
T ss_pred cccccCCCCCCC
Confidence 999877755544
No 36
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=97.42 E-value=0.00023 Score=53.76 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=34.7
Q ss_pred CCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCcccc
Q 028167 9 DTTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPV 52 (212)
Q Consensus 9 ~~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i 52 (212)
.+...++.|++++++++.|++.++..|+.+|.++|+++|++++|
T Consensus 52 it~efv~~mie~FK~~K~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 52 ITLEFVKAMIEWFKNQKKLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp --HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred CCHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 44556899999999999999999999999999999999999975
No 37
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=96.84 E-value=0.0039 Score=49.84 Aligned_cols=45 Identities=27% Similarity=0.577 Sum_probs=27.1
Q ss_pred ceeEeccCCCCHHHHH---HHHHHc---------Cch-----hhhhhhhcCCcEEEecccccc
Q 028167 55 PVTICGDIHGQFHDLA---ELFQIG---------GKL-----LVALKVRYPQRITILRGNHES 100 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~---~if~~~---------G~l-----l~~lKl~~P~~v~lLRGNHE~ 100 (212)
++.|++|+||++..+. ++++.. |++ +-.++- ....++.++||||.
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~l~~-~~~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTSPFVLKEFED-LAAKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCCHHHHHHHHH-hCCceEEEccCCCc
Confidence 4788999999986544 333332 231 222221 12348999999997
No 38
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=96.78 E-value=0.0037 Score=48.72 Aligned_cols=45 Identities=24% Similarity=0.534 Sum_probs=24.4
Q ss_pred ceeEeccCCCCHHHHHHHHHHc---------Cc------hhhhhhhhcCCcEEEecccccccc
Q 028167 55 PVTICGDIHGQFHDLAELFQIG---------GK------LLVALKVRYPQRITILRGNHESRQ 102 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~---------G~------ll~~lKl~~P~~v~lLRGNHE~~~ 102 (212)
++.++||+|+....+.++++.. |+ ++-.++-. .++.++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~~~d~vi~~GDi~~~~~~~~~~~~~---~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYINEPDFVIILGDIFDPEEVLELLRDI---PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHTTESEEEEES-SCSHHHHHHHHHHH---EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhcCCCEEEECCCchhHHHHHHHHhcC---CEEEEeCCccccc
Confidence 3667777777777776666653 22 11122222 6999999999543
No 39
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.53 E-value=0.0043 Score=58.67 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCccccc----CceeEeccCCCCHHHHHHHHHHc----------Cc-------------
Q 028167 26 PLSEPQVKALCEKAKEILMEESNVQPVK----SPVTICGDIHGQFHDLAELFQIG----------GK------------- 78 (212)
Q Consensus 26 ~l~~~~~~~Ll~~a~~il~~ep~ll~i~----~pi~VvGDiHG~~~dL~~if~~~----------G~------------- 78 (212)
-|...++..+++-+.+++..+|+...+. .-.+.++|.||+..|+.+..+.- |.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 4667788899999999999999998873 34889999999999999987642 11
Q ss_pred hhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCC--hhhHHHHHhhhcccccccccCceEEEEc
Q 028167 79 LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGN--ANIWKIFTDLFDYFPLTALSQKYSVCMV 147 (212)
Q Consensus 79 ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~--~~~~~~~~~~F~~LPlaavi~~~ilc~H 147 (212)
.+...+..-|+...+.|++||+..+...++|..++...++. ..++..+...+ .-|+++...+.++=.|
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~~~~-~~~i~~~y~g~~le~~ 163 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKIDEED-MDLIESDYSGPVLEDH 163 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCcccccccccccc-ccccccccCCcccccc
Confidence 45567788999999999999999999999999999888853 22333232222 2225555566555554
No 40
>PRK09453 phosphodiesterase; Provisional
Probab=95.37 E-value=0.025 Score=46.27 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=14.8
Q ss_pred ceeEeccCCCCHHHHHHHHHH
Q 028167 55 PVTICGDIHGQFHDLAELFQI 75 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~ 75 (212)
++.|++|+||++..+.++++.
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~ 22 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALEL 22 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHH
Confidence 367788888887777666553
No 41
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=95.30 E-value=0.024 Score=44.06 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=8.4
Q ss_pred EEEecccccc
Q 028167 91 ITILRGNHES 100 (212)
Q Consensus 91 v~lLRGNHE~ 100 (212)
+++++||||.
T Consensus 53 ~~~v~GNHD~ 62 (135)
T cd07379 53 KIVIAGNHDL 62 (135)
T ss_pred EEEEECCCCC
Confidence 6789999995
No 42
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=95.21 E-value=0.021 Score=50.39 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=14.3
Q ss_pred eeEeccCCCCHHHHHHH
Q 028167 56 VTICGDIHGQFHDLAEL 72 (212)
Q Consensus 56 i~VvGDiHG~~~dL~~i 72 (212)
|.|+||+||+|..+.+.
T Consensus 1 i~v~Gd~HG~~~~~~~~ 17 (262)
T cd00844 1 IAVEGCCHGELDKIYET 17 (262)
T ss_pred CEEEecCCccHHHHHHH
Confidence 57999999999888764
No 43
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=94.94 E-value=0.041 Score=44.09 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=27.9
Q ss_pred eeEeccCCCCHHHHHH-HHHH--------cCc-----------hhhhhhhhcCCcEEEecccccccchh
Q 028167 56 VTICGDIHGQFHDLAE-LFQI--------GGK-----------LLVALKVRYPQRITILRGNHESRQIT 104 (212)
Q Consensus 56 i~VvGDiHG~~~dL~~-if~~--------~G~-----------ll~~lKl~~P~~v~lLRGNHE~~~~n 104 (212)
+.+++|+||++..+.. ..+. .|+ .+-.++ ..+..++.++||||.....
T Consensus 1 i~~~sD~H~~~~~~~~~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~-~~~~p~~~v~GNHD~~~~~ 68 (188)
T cd07392 1 ILAISDIHGDVEKLEAIILKAEEADAVIVAGDITNFGGKEAAVEINLLL-AIGVPVLAVPGNCDTPEIL 68 (188)
T ss_pred CEEEEecCCCHHHHHHHHhhccCCCEEEECCCccCcCCHHHHHHHHHHH-hcCCCEEEEcCCCCCHHHH
Confidence 4678888888877764 1111 122 111111 2345589999999986543
No 44
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=94.72 E-value=0.066 Score=44.21 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=9.7
Q ss_pred cEEEecccccc
Q 028167 90 RITILRGNHES 100 (212)
Q Consensus 90 ~v~lLRGNHE~ 100 (212)
.++.+||||+.
T Consensus 54 ~~~~V~GN~D~ 64 (178)
T cd07394 54 DVHIVRGDFDE 64 (178)
T ss_pred ceEEEECCCCc
Confidence 58999999985
No 45
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=93.72 E-value=0.15 Score=37.33 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=12.2
Q ss_pred hhhcCCcEEEeccccc
Q 028167 84 KVRYPQRITILRGNHE 99 (212)
Q Consensus 84 Kl~~P~~v~lLRGNHE 99 (212)
+......++++.||||
T Consensus 54 ~~~~~~~~~~~~GNHD 69 (131)
T cd00838 54 LLLLGIPVYVVPGNHD 69 (131)
T ss_pred hhcCCCCEEEeCCCce
Confidence 4456677888999998
No 46
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=92.89 E-value=0.16 Score=43.85 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=31.7
Q ss_pred ceeEeccCCCCHHHHHHHHHHc-----------Cc----------hhhhhh-h-hcCCcEEEeccccccc
Q 028167 55 PVTICGDIHGQFHDLAELFQIG-----------GK----------LLVALK-V-RYPQRITILRGNHESR 101 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~~if~~~-----------G~----------ll~~lK-l-~~P~~v~lLRGNHE~~ 101 (212)
.+.+++|+||++..+.++++.. |+ +...+. + ..+..++.++|||+..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCChH
Confidence 4789999999999888877643 22 111222 1 2245689999999975
No 47
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=92.63 E-value=0.25 Score=40.11 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccC-CCCHHHHHHHHHHcCchhhhhhhhcCCcEEEeccccccc
Q 028167 24 CKPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDI-HGQFHDLAELFQIGGKLLVALKVRYPQRITILRGNHESR 101 (212)
Q Consensus 24 ~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDi-HG~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~ 101 (212)
+..++..+..+.+++..+++.+.. ...+++.||+ |+............. +.......-.+++++|||+..
T Consensus 18 g~~~p~~~~~~~~~~l~~~~~~~~-----~d~lii~GDl~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 18 GILLPRGQTEDTLERLDRLIEEYG-----PERLIILGDLKHSFGGLSRQEFEEVA---FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred CCcCCcccHHHHHHHHHHHHHhcC-----CCEEEEeCcccccccccCHHHHHHHH---HHHhccCCCeEEEEcccCccc
Confidence 455666666677788777776643 1358899995 432211111111100 111223456799999999964
No 48
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=91.89 E-value=0.095 Score=41.87 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.1
Q ss_pred hcCCcEEEeccccccc
Q 028167 86 RYPQRITILRGNHESR 101 (212)
Q Consensus 86 ~~P~~v~lLRGNHE~~ 101 (212)
..+..+++++||||..
T Consensus 53 ~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 53 KGFEPVIYVPGNHEFY 68 (166)
T ss_pred cCCccEEEeCCCcceE
Confidence 4456799999999986
No 49
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=91.77 E-value=0.2 Score=38.97 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=9.4
Q ss_pred cEEEecccccc
Q 028167 90 RITILRGNHES 100 (212)
Q Consensus 90 ~v~lLRGNHE~ 100 (212)
.++.++||||.
T Consensus 47 ~~~~V~GN~D~ 57 (129)
T cd07403 47 PVYYVHGNHDV 57 (129)
T ss_pred CEEEEeCCCcc
Confidence 48899999994
No 50
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=91.01 E-value=0.6 Score=38.72 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=27.8
Q ss_pred ceeEeccCCCCHHHHH---HHHHH--------cCc-----hhhhhhhhcCCcEEEeccccccc
Q 028167 55 PVTICGDIHGQFHDLA---ELFQI--------GGK-----LLVALKVRYPQRITILRGNHESR 101 (212)
Q Consensus 55 pi~VvGDiHG~~~dL~---~if~~--------~G~-----ll~~lKl~~P~~v~lLRGNHE~~ 101 (212)
.+.|++|+||...+.. +++.. .|+ .+..+.-....+++.+|||.+..
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~~~l~~~~~~~i~~V~GN~D~~ 65 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTLDALEGGLAAKLIAVRGNCDGE 65 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccchHHhhcccccceEEEEccCCCc
Confidence 4789999999995433 33332 133 22222221357788888887653
No 51
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=88.47 E-value=1.7 Score=37.36 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcccccCceeEeccCC------CCHHHHHHHHHHcCchhhhhhhhcCCcEEEecccc
Q 028167 25 KPLSEPQVKALCEKAKEILMEESNVQPVKSPVTICGDIH------GQFHDLAELFQIGGKLLVALKVRYPQRITILRGNH 98 (212)
Q Consensus 25 ~~l~~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiH------G~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNH 98 (212)
-.++..+..+.++++.+++.+.. -..+++.||+- .++..+.++++.. ...++++||||
T Consensus 36 i~~P~~~~~~~l~rl~~li~~~~-----~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~-----------~~~v~~V~GNH 99 (225)
T TIGR00024 36 VMVPGFQFREIIERALSIADKYG-----IEALIINGDLKHEFKKGLEWRFIREFIEVT-----------FRDLILIRGNH 99 (225)
T ss_pred CcCChhHHHHHHHHHHHHHhhcC-----CCEEEEcCccccccCChHHHHHHHHHHHhc-----------CCcEEEECCCC
Confidence 34777777888888888776643 12478999975 1233333333321 14799999999
Q ss_pred ccc
Q 028167 99 ESR 101 (212)
Q Consensus 99 E~~ 101 (212)
+..
T Consensus 100 D~~ 102 (225)
T TIGR00024 100 DAL 102 (225)
T ss_pred CCc
Confidence 964
No 52
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=87.50 E-value=0.69 Score=38.32 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=12.7
Q ss_pred cCCcEEEecccccccc
Q 028167 87 YPQRITILRGNHESRQ 102 (212)
Q Consensus 87 ~P~~v~lLRGNHE~~~ 102 (212)
.+..++.+.||||...
T Consensus 62 ~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 62 APLGVYAVLGNHDYYS 77 (223)
T ss_pred CCCCEEEECCCccccc
Confidence 4556999999999754
No 53
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=85.18 E-value=1.1 Score=36.32 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=13.6
Q ss_pred hhcCCcEEEecccccccch
Q 028167 85 VRYPQRITILRGNHESRQI 103 (212)
Q Consensus 85 l~~P~~v~lLRGNHE~~~~ 103 (212)
..-|--.|++-||||...+
T Consensus 54 ~~~pipTyf~ggn~~~~DI 72 (150)
T cd07380 54 KKVPIPTYFLGGNNPGVDI 72 (150)
T ss_pred ccCCCCEEEECCCCCCCCE
Confidence 3455668999999995544
No 54
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=80.63 E-value=2.8 Score=35.60 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=23.6
Q ss_pred eeEeccCCCCHHHHHHHHHHcCchhhhhhhhcCCcEEEeccccccc
Q 028167 56 VTICGDIHGQFHDLAELFQIGGKLLVALKVRYPQRITILRGNHESR 101 (212)
Q Consensus 56 i~VvGDiHG~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~ 101 (212)
+++.||+-.....-...++.. .+ ..+..++++.||||..
T Consensus 36 vv~~GDl~~~~~~~~~~~~~l------~~-~~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 36 LHIAGDISNDFQRSLPFIEKL------QE-LKGIKVTFNAGNHDML 74 (239)
T ss_pred EEECCccccchhhHHHHHHHH------HH-hcCCcEEEECCCCCCC
Confidence 778899877543333333211 11 1345689999999964
No 55
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.17 E-value=5.3 Score=34.62 Aligned_cols=64 Identities=27% Similarity=0.435 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHHHH---HHHHHHcCchhhhhhhhcCCcEEEecccccccc
Q 028167 31 QVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDL---AELFQIGGKLLVALKVRYPQRITILRGNHESRQ 102 (212)
Q Consensus 31 ~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL---~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~~ 102 (212)
+....+++..+.+.++. + .-+++.||+--....- .++|.. ++-.++-..|-.++++.|||+...
T Consensus 23 ~~~~~l~~l~~~~~~~~----~-D~lli~GDi~d~~~p~~~~~~~~~~---~l~~l~~~~~i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 23 EQKAFLDDLLEFAKAEQ----I-DALLVAGDVFDTANPPAEAQELFNA---FFRNLSDANPIPIVVISGNHDSAQ 89 (253)
T ss_pred HHHHHHHHHHHHHHHcC----C-CEEEECCccCCCCCCCHHHHHHHHH---HHHHHHhcCCceEEEEccCCCChh
Confidence 34445566666655542 1 1378999987654311 111211 111222222356999999999853
No 56
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=76.23 E-value=3.7 Score=35.00 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=11.0
Q ss_pred CcEEEeccccccc
Q 028167 89 QRITILRGNHESR 101 (212)
Q Consensus 89 ~~v~lLRGNHE~~ 101 (212)
-.+++++||||..
T Consensus 71 ~~v~~v~GNHD~~ 83 (241)
T PRK05340 71 VPCYFMHGNRDFL 83 (241)
T ss_pred CeEEEEeCCCchh
Confidence 5799999999963
No 57
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=74.99 E-value=4.8 Score=35.13 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=10.8
Q ss_pred CcEEEeccccccc
Q 028167 89 QRITILRGNHESR 101 (212)
Q Consensus 89 ~~v~lLRGNHE~~ 101 (212)
..+|.+.||||..
T Consensus 113 ~pv~~V~GNHD~~ 125 (271)
T PRK11340 113 APTFACFGNHDRP 125 (271)
T ss_pred CCEEEecCCCCcc
Confidence 4599999999964
No 58
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=73.94 E-value=7.1 Score=33.11 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=11.5
Q ss_pred CCcEEEeccccccc
Q 028167 88 PQRITILRGNHESR 101 (212)
Q Consensus 88 P~~v~lLRGNHE~~ 101 (212)
+..+++++||||..
T Consensus 68 ~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 68 GVPCYFMHGNRDFL 81 (231)
T ss_pred CCeEEEEcCCCchh
Confidence 45799999999963
No 59
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=71.96 E-value=15 Score=32.65 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhhCCCcccc--c--CceeEeccCCCCHHHHHHHHHHcCc--hhhhhhh----------hcCCcEEEe
Q 028167 31 QVKALCEKAKEILMEESNVQPV--K--SPVTICGDIHGQFHDLAELFQIGGK--LLVALKV----------RYPQRITIL 94 (212)
Q Consensus 31 ~~~~Ll~~a~~il~~ep~ll~i--~--~pi~VvGDiHG~~~dL~~if~~~G~--ll~~lKl----------~~P~~v~lL 94 (212)
.+..|+.+---+|.+...-+-+ + .|+++.||--|+-.+- +.|+ .+-+|+- +--++|+.|
T Consensus 59 ~~~~~ln~rdmiln~lh~hvflk~daitpciflgdhtgdrfst-----i~gd~yiltllnsm~nme~nkdsrinknvvvl 133 (318)
T PF13258_consen 59 TLYSLLNTRDMILNELHQHVFLKDDAITPCIFLGDHTGDRFST-----IFGDQYILTLLNSMRNMEGNKDSRINKNVVVL 133 (318)
T ss_pred HHHHHhhHhHHHHHhhhheEEecCCCcccceeecCcccchhhh-----hcchHHHHHHHHHHHhcccccccccccceEEE
Confidence 4445555444444444333333 2 4999999998874432 2333 1111111 234789999
Q ss_pred cccccccchhhhcccHHHH-HHhhCChhhHHHHHhhhccccccccc-CceEEEEcCC
Q 028167 95 RGNHESRQITQVYGFYDEC-LRKYGNANIWKIFTDLFDYFPLTALS-QKYSVCMVGC 149 (212)
Q Consensus 95 RGNHE~~~~n~~ygF~~e~-~~kyg~~~~~~~~~~~F~~LPlaavi-~~~ilc~HGG 149 (212)
.||||.- .|..|. ..+ ..|...++-|..+ ..+|+|--. ..+++..|-|
T Consensus 134 agnhein-~ngny~--arlanhkls~gDTYnlI----KtldVC~YD~erkvltsHHG 183 (318)
T PF13258_consen 134 AGNHEIN-FNGNYM--ARLANHKLSAGDTYNLI----KTLDVCNYDPERKVLTSHHG 183 (318)
T ss_pred ecCceec-cCchHH--HHHhhCCCCccchhhcc----ccccccccCcchhhhhcccC
Confidence 9999963 343332 111 2222223444443 346777653 3345554444
No 60
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=67.40 E-value=7.2 Score=29.93 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=22.9
Q ss_pred ceeEeccCCCC-----HHHHHHHHHHcCchhhhhhhhcCCcEEEecccccc
Q 028167 55 PVTICGDIHGQ-----FHDLAELFQIGGKLLVALKVRYPQRITILRGNHES 100 (212)
Q Consensus 55 pi~VvGDiHG~-----~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~ 100 (212)
-+++.||+=.. +..+.++|+.... .. ..+++++||||.
T Consensus 38 ~vi~~GDl~~~~~~~~~~~~~~~~~~l~~-------~~-~~~~~v~GNHD~ 80 (144)
T cd07400 38 LVVITGDLTQRGLPEEFEEAREFLDALPA-------PL-EPVLVVPGNHDV 80 (144)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHccc-------cC-CcEEEeCCCCeE
Confidence 48899997432 3333444443321 10 368999999997
No 61
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=67.38 E-value=6.9 Score=31.47 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=24.1
Q ss_pred CceeEeccCCCCHHHH--HHHHHHcCchhhhhhhhcCCcEEEecccccccc
Q 028167 54 SPVTICGDIHGQFHDL--AELFQIGGKLLVALKVRYPQRITILRGNHESRQ 102 (212)
Q Consensus 54 ~pi~VvGDiHG~~~dL--~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~~ 102 (212)
.-+++.||+-.....- .+.++ ..+..+++++|||+...
T Consensus 44 d~vi~~GDl~~~~~~~~~~~~l~-----------~~~~~~~~v~GNHD~~~ 83 (168)
T cd07390 44 DTVYHLGDFSFGGKAGTELELLS-----------RLNGRKHLIKGNHDSSL 83 (168)
T ss_pred CEEEEeCCCCCCCChHHHHHHHH-----------hCCCCeEEEeCCCCchh
Confidence 4689999986554322 12221 12346899999999653
No 62
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=65.79 E-value=7.7 Score=31.65 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=11.4
Q ss_pred CCcEEEeccccccc
Q 028167 88 PQRITILRGNHESR 101 (212)
Q Consensus 88 P~~v~lLRGNHE~~ 101 (212)
.-.++.++|||+--
T Consensus 87 ~~~~~~v~GNHD~g 100 (171)
T cd07384 87 DIPVYYVPGNHDIG 100 (171)
T ss_pred CceEEEECCccccC
Confidence 45699999999864
No 63
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=65.41 E-value=16 Score=29.77 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCCHH----HHHHHHHHcCchhhhhhhh-cCCcEEEecccccccch
Q 028167 29 EPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQFH----DLAELFQIGGKLLVALKVR-YPQRITILRGNHESRQI 103 (212)
Q Consensus 29 ~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~~~----dL~~if~~~G~ll~~lKl~-~P~~v~lLRGNHE~~~~ 103 (212)
.++....++++.+...++. ++ -+++.||+-.... .+..+.+.. -++. ..-.++++.||||....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~----~d-~i~~~GD~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 23 REDQFEAFEEIVELAIEEK----VD-FVLIAGDLFDSNNPSPEALELLIEAL------RRLKEAGIPVFIIAGNHDSPSR 91 (223)
T ss_pred hHHHHHHHHHHHHHHHhcC----CC-EEEECCcccCCCCCCHHHHHHHHHHH------HHHHHCCCCEEEecCCCCCccc
Confidence 4556666777666665532 11 3889999754322 122222211 1221 23468999999998765
Q ss_pred h
Q 028167 104 T 104 (212)
Q Consensus 104 n 104 (212)
.
T Consensus 92 ~ 92 (223)
T cd00840 92 L 92 (223)
T ss_pred c
Confidence 4
No 64
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=64.72 E-value=8.6 Score=32.65 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=20.7
Q ss_pred eeEeccCCC--CHHHHHHHHHHcCchhhhhhhhcCCcEEEecccccc
Q 028167 56 VTICGDIHG--QFHDLAELFQIGGKLLVALKVRYPQRITILRGNHES 100 (212)
Q Consensus 56 i~VvGDiHG--~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~ 100 (212)
+++.||+-- ......+.++. ++- .|..++.+.||||.
T Consensus 45 viiaGDl~~~~~~~~~~~~l~~-------l~~-l~~~v~~V~GNHD~ 83 (232)
T cd07393 45 VLIPGDISWAMKLEEAKLDLAW-------IDA-LPGTKVLLKGNHDY 83 (232)
T ss_pred EEEcCCCccCCChHHHHHHHHH-------HHh-CCCCeEEEeCCccc
Confidence 678899751 22222232221 121 13348999999996
No 65
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=64.45 E-value=20 Score=30.93 Aligned_cols=59 Identities=24% Similarity=0.218 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCCcccccCceeEeccC-C-CCH---HHHHHHHHHcCchhhhhhhhcCCcEEEecccccccch
Q 028167 32 VKALCEKAKEILMEESNVQPVKSPVTICGDI-H-GQF---HDLAELFQIGGKLLVALKVRYPQRITILRGNHESRQI 103 (212)
Q Consensus 32 ~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDi-H-G~~---~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~~~ 103 (212)
-...+++|.+.+.+.. + .=+++.||+ + |.. ..+..+.+..+ ++ +-.++.+.||||....
T Consensus 25 ~~~~l~~~i~~i~~~~----~-d~vv~~GDlv~~~~~~~~~~~~~~~~~l~------~l--~~p~~~v~GNHD~~~~ 88 (267)
T cd07396 25 SLEKLEEAVEEWNRES----L-DFVVQLGDIIDGDNARAEEALDAVLAILD------RL--KGPVHHVLGNHDLYNP 88 (267)
T ss_pred hHHHHHHHHHHHHcCC----C-CEEEECCCeecCCCchHHHHHHHHHHHHH------hc--CCCEEEecCccccccc
Confidence 3455666666665443 1 137889997 3 332 23333332221 11 2358999999997644
No 66
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=61.06 E-value=11 Score=31.48 Aligned_cols=38 Identities=26% Similarity=0.486 Sum_probs=22.1
Q ss_pred eeEeccCCC--CHHHHHHHHHHcCchhhhhhhhcCCcEEEeccccccc
Q 028167 56 VTICGDIHG--QFHDLAELFQIGGKLLVALKVRYPQRITILRGNHESR 101 (212)
Q Consensus 56 i~VvGDiHG--~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~ 101 (212)
+++.||+=. .-....++.+... ++ +-.++.++||||..
T Consensus 44 vi~~GDl~~~~~~~~~~~~~~~l~------~~--~~p~~~v~GNHD~~ 83 (240)
T cd07402 44 VLVTGDLTDDGSPESYERLRELLA------AL--PIPVYLLPGNHDDR 83 (240)
T ss_pred EEECccCCCCCCHHHHHHHHHHHh------hc--CCCEEEeCCCCCCH
Confidence 788999653 3333222322221 11 44589999999974
No 67
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=60.92 E-value=12 Score=32.40 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=22.3
Q ss_pred eeEeccCCC--CHHHHHHHHHHcCchhhhhhhhcCCcEEEeccccccc
Q 028167 56 VTICGDIHG--QFHDLAELFQIGGKLLVALKVRYPQRITILRGNHESR 101 (212)
Q Consensus 56 i~VvGDiHG--~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~ 101 (212)
+++.||+=- ......++.+... ++ +..++.+.||||..
T Consensus 59 vvitGDl~~~~~~~~~~~~~~~l~------~l--~~Pv~~v~GNHD~~ 98 (275)
T PRK11148 59 IVATGDLAQDHSSEAYQHFAEGIA------PL--RKPCVWLPGNHDFQ 98 (275)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHh------hc--CCcEEEeCCCCCCh
Confidence 778899643 3333333333221 12 34599999999974
No 68
>PRK04036 DNA polymerase II small subunit; Validated
Probab=59.69 E-value=23 Score=34.06 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.2
Q ss_pred hcCCcEEEecccccccc
Q 028167 86 RYPQRITILRGNHESRQ 102 (212)
Q Consensus 86 ~~P~~v~lLRGNHE~~~ 102 (212)
...-.+++++||||...
T Consensus 328 ~~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 328 PEDIKIIISPGNHDAVR 344 (504)
T ss_pred hcCCeEEEecCCCcchh
Confidence 34457999999999754
No 69
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=59.60 E-value=15 Score=31.00 Aligned_cols=8 Identities=50% Similarity=0.551 Sum_probs=5.7
Q ss_pred eccccccc
Q 028167 94 LRGNHESR 101 (212)
Q Consensus 94 LRGNHE~~ 101 (212)
.-||||..
T Consensus 75 ~~GNHe~d 82 (252)
T cd00845 75 TIGNHEFD 82 (252)
T ss_pred eecccccc
Confidence 34999964
No 70
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=57.73 E-value=26 Score=29.88 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=11.3
Q ss_pred CCcEEEeccccccc
Q 028167 88 PQRITILRGNHESR 101 (212)
Q Consensus 88 P~~v~lLRGNHE~~ 101 (212)
+-.++.+.||||..
T Consensus 86 ~vp~~~i~GNHD~~ 99 (262)
T cd07395 86 DIPLVCVCGNHDVG 99 (262)
T ss_pred CCcEEEeCCCCCCC
Confidence 34599999999974
No 71
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.53 E-value=17 Score=31.88 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=26.9
Q ss_pred cCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhhcccccccc---cCceEEEEcCC
Q 028167 87 YPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLFDYFPLTAL---SQKYSVCMVGC 149 (212)
Q Consensus 87 ~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F~~LPlaav---i~~~ilc~HGG 149 (212)
.-.++|.+.|||+.. +.+. .....|. +.-+|=..+ -+++++++||-
T Consensus 66 ~G~~v~~i~GN~Dfl-l~~~------f~~~~g~----------~~l~~~~~~~~l~g~~~Ll~HGD 114 (237)
T COG2908 66 KGTRVYYIHGNHDFL-LGKR------FAQEAGG----------MTLLPDPIVLDLYGKRILLAHGD 114 (237)
T ss_pred cCCeEEEecCchHHH-HHHH------HHhhcCc----------eEEcCcceeeeecCcEEEEEeCC
Confidence 337899999999732 2111 1122221 334454444 47899999993
No 72
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=56.53 E-value=19 Score=30.08 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=31.8
Q ss_pred HHhhCCCcccccCceeEeccCCCCHHH---HHHHHHHcCchhhhhhhhcCCcEEEecccccccc
Q 028167 42 ILMEESNVQPVKSPVTICGDIHGQFHD---LAELFQIGGKLLVALKVRYPQRITILRGNHESRQ 102 (212)
Q Consensus 42 il~~ep~ll~i~~pi~VvGDiHG~~~d---L~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~~ 102 (212)
++.+-.+++..+..++..||+--.+.+ ..+|++ +-|.+.+|++|||+.-.
T Consensus 35 il~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~Ile-----------rLnGrkhlv~GNhDk~~ 87 (186)
T COG4186 35 ILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILE-----------RLNGRKHLVPGNHDKCH 87 (186)
T ss_pred HHHhHHhcCCccceEEEecccccccchhhHHHHHHH-----------HcCCcEEEeeCCCCCCc
Confidence 344444556667779999997655543 222333 23577899999998643
No 73
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=54.20 E-value=18 Score=30.84 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=13.5
Q ss_pred hhcCCcEEEecccccccc
Q 028167 85 VRYPQRITILRGNHESRQ 102 (212)
Q Consensus 85 l~~P~~v~lLRGNHE~~~ 102 (212)
+...-.++++.||||...
T Consensus 78 L~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 78 VPSHIKIIIIPGNHDAVR 95 (243)
T ss_pred cccCCeEEEeCCCCCccc
Confidence 334567999999999753
No 74
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=53.90 E-value=28 Score=32.54 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=11.4
Q ss_pred CcEEEecccccccc
Q 028167 89 QRITILRGNHESRQ 102 (212)
Q Consensus 89 ~~v~lLRGNHE~~~ 102 (212)
-.++++.|||+...
T Consensus 75 ~~v~~I~GNHD~~~ 88 (407)
T PRK10966 75 CQLVVLAGNHDSVA 88 (407)
T ss_pred CcEEEEcCCCCChh
Confidence 45899999999764
No 75
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=52.19 E-value=68 Score=27.86 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhCCCcccccCceeEeccC--CCCHHHHHHHHHH--cCchhhhhhhhcC-CcEEEecccccccchh
Q 028167 33 KALCEKAKEILMEESNVQPVKSPVTICGDI--HGQFHDLAELFQI--GGKLLVALKVRYP-QRITILRGNHESRQIT 104 (212)
Q Consensus 33 ~~Ll~~a~~il~~ep~ll~i~~pi~VvGDi--HG~~~dL~~if~~--~G~ll~~lKl~~P-~~v~lLRGNHE~~~~n 104 (212)
..+++.+.+.+++.. .+. .=+++-||+ |+......+.-.. ...+.-.+|-.+| --++..-||||....+
T Consensus 52 ~~l~~s~l~~i~~~~--~~~-dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~ 125 (296)
T cd00842 52 WRLVESALEAIKKNH--PKP-DFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVN 125 (296)
T ss_pred HHHHHHHHHHHHHhC--CCC-CEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCccc
Confidence 345555555554442 011 127788996 4543322221110 1111122333333 3589999999987544
No 76
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=51.46 E-value=16 Score=23.12 Aligned_cols=27 Identities=19% Similarity=0.485 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHcCchhhhhhhhcCCcEEEeccccc
Q 028167 63 HGQFHDLAELFQIGGKLLVALKVRYPQRITILRGNHE 99 (212)
Q Consensus 63 HG~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE 99 (212)
|++..+|.++++. ..|++++++.|.+|
T Consensus 17 Had~~~L~~~i~~----------~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 17 HADREELLEFIEQ----------LNPRKVILVHGEPR 43 (43)
T ss_dssp S-BHHHHHHHHHH----------HCSSEEEEESSEHH
T ss_pred CCCHHHHHHHHHh----------cCCCEEEEecCCCC
Confidence 8889999988753 47899999998753
No 77
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=49.51 E-value=17 Score=29.06 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=11.0
Q ss_pred CcEEEeccccccc
Q 028167 89 QRITILRGNHESR 101 (212)
Q Consensus 89 ~~v~lLRGNHE~~ 101 (212)
-.+++++||||..
T Consensus 77 ~~i~~v~GNHD~~ 89 (156)
T cd08165 77 LPLHVVVGNHDIG 89 (156)
T ss_pred CeEEEEcCCCCcC
Confidence 4699999999964
No 78
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=48.12 E-value=26 Score=29.63 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=34.4
Q ss_pred eeEeccCCCCHH-----HHHHHHHHcCchhhhhhhhcCCcEEEecccccccchhhhcccHHHHHHhhCChhhHHHHHhhh
Q 028167 56 VTICGDIHGQFH-----DLAELFQIGGKLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANIWKIFTDLF 130 (212)
Q Consensus 56 i~VvGDiHG~~~-----dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~~~n~~ygF~~e~~~kyg~~~~~~~~~~~F 130 (212)
++|+||+-.... .....++.... +++. ..--.++.+.||||--.-. ..-..+..++| ++.| =++
T Consensus 46 Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~-If~~--~~~~~~~~VpGNHDIG~~~--~~~~~~~v~RF--~~~F----i~l 114 (195)
T cd08166 46 VIFLGDLMDEGSIANDDEYYSYVQRFIN-IFEV--PNGTKIIYLPGDNDIGGEE--EDPIESKIRRF--EKYF----IML 114 (195)
T ss_pred EEEeccccCCCCCCCHHHHHHHHHHHHH-HhcC--CCCCcEEEECCCCCcCCCC--CCcCHHHHHHH--HHhh----eee
Confidence 789999765432 12333322221 1111 1224578899999853211 11124455555 2333 556
Q ss_pred ccccc
Q 028167 131 DYFPL 135 (212)
Q Consensus 131 ~~LPl 135 (212)
+.+|+
T Consensus 115 sH~P~ 119 (195)
T cd08166 115 SHVPL 119 (195)
T ss_pred ecccc
Confidence 66776
No 79
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=46.50 E-value=60 Score=29.61 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccccCceeEeccCCCC----HHHHHHHHHHcCchhhhhhhhc-CCcEEEecccccccch
Q 028167 29 EPQVKALCEKAKEILMEESNVQPVKSPVTICGDIHGQ----FHDLAELFQIGGKLLVALKVRY-PQRITILRGNHESRQI 103 (212)
Q Consensus 29 ~~~~~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG~----~~dL~~if~~~G~ll~~lKl~~-P~~v~lLRGNHE~~~~ 103 (212)
.++...-++++.++..++.. .=++|-|||-=. ...+....+.. .++.. ---+|++.|||+...-
T Consensus 22 ~~d~~~~f~~~l~~a~~~~v-----D~vliAGDlFd~~~Ps~~a~~~~~~~l------~~l~~~~Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 22 LEDQKKAFDELLEIAKEEKV-----DFVLIAGDLFDTNNPSPRALKLFLEAL------RRLKDAGIPVVVIAGNHDSPSR 90 (390)
T ss_pred hHHHHHHHHHHHHHHHHccC-----CEEEEccccccCCCCCHHHHHHHHHHH------HHhccCCCcEEEecCCCCchhc
Confidence 46677777777777777665 347888997433 11122111111 11111 1358999999998864
No 80
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=45.16 E-value=72 Score=26.64 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=9.6
Q ss_pred CcEEEecccccc
Q 028167 89 QRITILRGNHES 100 (212)
Q Consensus 89 ~~v~lLRGNHE~ 100 (212)
--++.++||||.
T Consensus 70 ~p~~~~~GNHD~ 81 (214)
T cd07399 70 IPYSVLAGNHDL 81 (214)
T ss_pred CcEEEECCCCcc
Confidence 347899999993
No 81
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=37.89 E-value=31 Score=30.37 Aligned_cols=9 Identities=44% Similarity=0.442 Sum_probs=6.1
Q ss_pred Eeccccccc
Q 028167 93 ILRGNHESR 101 (212)
Q Consensus 93 lLRGNHE~~ 101 (212)
+.-||||..
T Consensus 80 ~t~GNHefd 88 (288)
T cd07412 80 SAVGNHEFD 88 (288)
T ss_pred eeecccccc
Confidence 334999954
No 82
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=37.82 E-value=33 Score=29.52 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=11.0
Q ss_pred CcEEEecccccccc
Q 028167 89 QRITILRGNHESRQ 102 (212)
Q Consensus 89 ~~v~lLRGNHE~~~ 102 (212)
--++.++||||...
T Consensus 69 ~P~~~~~GNHD~~~ 82 (294)
T cd00839 69 VPYMVTPGNHEADY 82 (294)
T ss_pred CCcEEcCccccccc
Confidence 34789999999754
No 83
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=37.68 E-value=51 Score=28.85 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=10.3
Q ss_pred cEEEeccccccc
Q 028167 90 RITILRGNHESR 101 (212)
Q Consensus 90 ~v~lLRGNHE~~ 101 (212)
.++++||||+..
T Consensus 99 evi~i~GNHD~~ 110 (235)
T COG1407 99 EVIIIRGNHDNG 110 (235)
T ss_pred cEEEEeccCCCc
Confidence 499999999864
No 84
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=34.04 E-value=40 Score=29.51 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=10.1
Q ss_pred hhhhhcCCcEEEeccccccc
Q 028167 82 ALKVRYPQRITILRGNHESR 101 (212)
Q Consensus 82 ~lKl~~P~~v~lLRGNHE~~ 101 (212)
+++..-.+-+. -||||..
T Consensus 77 ~ln~~g~D~~~--lGNHefd 94 (281)
T cd07409 77 FMNLLGYDAMT--LGNHEFD 94 (281)
T ss_pred HHHhcCCCEEE--ecccccc
Confidence 44444445443 3999964
No 85
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=33.87 E-value=23 Score=30.26 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.4
Q ss_pred hcCCcEEEeccccccc
Q 028167 86 RYPQRITILRGNHESR 101 (212)
Q Consensus 86 ~~P~~v~lLRGNHE~~ 101 (212)
.-|..=+++||||+-.
T Consensus 71 ~LPG~K~m~rGNHDYW 86 (230)
T COG1768 71 DLPGTKYMIRGNHDYW 86 (230)
T ss_pred cCCCcEEEEecCCccc
Confidence 4588889999999854
No 86
>PHA02546 47 endonuclease subunit; Provisional
Probab=33.52 E-value=97 Score=27.98 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=11.6
Q ss_pred CCcEEEeccccccc
Q 028167 88 PQRITILRGNHESR 101 (212)
Q Consensus 88 P~~v~lLRGNHE~~ 101 (212)
+-.++++.|||+..
T Consensus 76 gi~v~~I~GNHD~~ 89 (340)
T PHA02546 76 GITLHVLVGNHDMY 89 (340)
T ss_pred CCeEEEEccCCCcc
Confidence 35699999999974
No 87
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=32.91 E-value=35 Score=34.02 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=26.4
Q ss_pred HHHHHhhCCCcccccCceeEeccCCCCHHHHHHHHHHc
Q 028167 39 AKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFQIG 76 (212)
Q Consensus 39 a~~il~~ep~ll~i~~pi~VvGDiHG~~~dL~~if~~~ 76 (212)
+.++..-+..+-=.++.-.++.||||.|+.+..+++..
T Consensus 18 ~tEIINL~AIlnLPKGTEhF~SDlHGEyeAF~HiLrn~ 55 (640)
T PF06874_consen 18 STEIINLEAILNLPKGTEHFMSDLHGEYEAFDHILRNG 55 (640)
T ss_pred HHHHHHHHHHhcCCCCceEeeeccccchHHHHHHHHcC
Confidence 34444333333223667899999999999999999754
No 88
>PF05413 Peptidase_C34: Putative closterovirus papain-like endopeptidase; InterPro: IPR008744 RNA-directed RNA polymerase (RdRp) (2.7.7.48 from EC) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage [, ]. It catalyses synthesis of the RNA strand complementary to a given RNA template, but the precise molecular mechanism remains unclear. The postulated RNA replication process is a two-step mechanism. First, the initiation step of RNA synthesis begins at or near the 3' end of the RNA template by means of a primer-independent (de novo) mechanism. The de novo initiation consists in the addition of a nucleotide tri-phosphate (NTP) to the 3'-OH of the first initiating NTP. During the following so-called elongation phase, this nucleotidyl transfer reaction is repeated with subsequent NTPs to generate the complementary RNA product []. All the RNA-directed RNA polymerases, and many DNA-directed polymerases, employ a fold whose organisation has been likened to the shape of a right hand with three subdomains termed fingers, palm and thumb []. Only the catalytic palm subdomain, composed of a four-stranded antiparallel beta-sheet with two alpha-helices, is well conserved among all of these enzymes. In RdRp, the palm subdomain comprises three well conserved motifs (A, B and C). Motif A (D-x(4,5)-D) and motif C (GDD) are spatially juxtaposed; the Asp residues of these motifs are implied in the binding of Mg2+ and/or Mn2+. The Asn residue of motif B is involved in selection of ribonucleoside triphosphates over dNTPs and thus determines whether RNA is synthesised rather than DNA []. The domain organisation [] and the 3D structure of the catalytic centre of a wide range of RdPp's, even those with a low overall sequence homology, are conserved. The catalytic centre is formed by several motifs containing a number of conserved amino acid residues. There are 4 superfamilies of viruses that cover all RNA containing viruses with no DNA stage: Viruses containing positive-strand RNA or double-strand RNA, except retroviruses and Birnaviridae: viral RNA-directed RNA polymerases including all positive-strand RNA viruses with no DNA stage, double-strand RNA viruses, and the Cystoviridae, Reoviridae, Hypoviridae, Partitiviridae, Totiviridae families. Mononegavirales (negative-strand RNA viruses with non-segmented genomes). Negative-strand RNA viruses with segmented genomes, i.e. Orthomyxoviruses (including influenza A, B, and C viruses, Thogotoviruses, and the infectious salmon anemia virus), Arenaviruses, Bunyaviruses, Hantaviruses, Nairoviruses, Phleboviruses, Tenuiviruses and Tospoviruses. Birnaviridae family of dsRNA viruses. The RNA-directed RNA polymerases in the first of the above superfamilies can be divided into the following three subgroups: All positive-strand RNA eukaryotic viruses with no DNA stage. All RNA-containing bacteriophages -there are two families of RNA-containing bacteriophages: Leviviridae (positive ssRNA phages) and Cystoviridae (dsRNA phages). Reoviridae family of dsRNA viruses. This signature is found in the RNA-direct RNA polymerase of apple chlorotic leaf spot virus and cherry mottle virus.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0019079 viral genome replication
Probab=32.49 E-value=20 Score=26.46 Aligned_cols=12 Identities=50% Similarity=0.722 Sum_probs=8.5
Q ss_pred CCcEEEeccccc
Q 028167 88 PQRITILRGNHE 99 (212)
Q Consensus 88 P~~v~lLRGNHE 99 (212)
|-.-.+|||||=
T Consensus 77 ~~Gr~~LRGNHF 88 (92)
T PF05413_consen 77 PLGRMLLRGNHF 88 (92)
T ss_pred chhheeecccce
Confidence 334468999994
No 89
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=29.27 E-value=76 Score=27.21 Aligned_cols=9 Identities=44% Similarity=0.660 Sum_probs=6.2
Q ss_pred Eeccccccc
Q 028167 93 ILRGNHESR 101 (212)
Q Consensus 93 lLRGNHE~~ 101 (212)
+.-||||..
T Consensus 74 ~~~GNHefd 82 (257)
T cd07408 74 VTPGNHEFD 82 (257)
T ss_pred Ecccccccc
Confidence 345999963
No 90
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=29.26 E-value=60 Score=26.47 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=9.9
Q ss_pred CCcEEEeccccc
Q 028167 88 PQRITILRGNHE 99 (212)
Q Consensus 88 P~~v~lLRGNHE 99 (212)
.-.++++.||||
T Consensus 76 ~~p~~~~~GNHD 87 (199)
T cd07383 76 KIPWAATFGNHD 87 (199)
T ss_pred CCCEEEECccCC
Confidence 345789999999
No 91
>COG5526 Lysozyme family protein [General function prediction only]
Probab=28.85 E-value=76 Score=26.37 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=49.8
Q ss_pred CCCCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhCCCccccc----CceeEeccCCCCHH
Q 028167 6 LSTDTTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILMEESNVQPVK----SPVTICGDIHGQFH 67 (212)
Q Consensus 6 ~~~~~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ep~ll~i~----~pi~VvGDiHG~~~ 67 (212)
.+......+.+-.+++.+.-++..+.+-.+-..++.|+...|.--.++ -|-++||=+|-.-.
T Consensus 4 ~~~~~l~~lk~eY~rlw~~cqiRpewa~~vkk~~k~ila~k~rYe~i~sqT~iPW~fiG~iH~~E~ 69 (191)
T COG5526 4 INMGLLDELKEEYERLWEKCQIRPEWASVVKKEAKRILAGKPRYEQIESQTGIPWWFIGLIHYRES 69 (191)
T ss_pred hhhhhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCccchhhhcccCCCeeeeehhhhhhc
Confidence 444555567777888888889999999999999999999998877763 48999999995433
No 92
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=28.76 E-value=88 Score=26.23 Aligned_cols=43 Identities=21% Similarity=0.550 Sum_probs=26.2
Q ss_pred eeEeccC--CCCHHHHHHHHHHcCchhhhhhhhcCCcEEEecccccccchh
Q 028167 56 VTICGDI--HGQFHDLAELFQIGGKLLVALKVRYPQRITILRGNHESRQIT 104 (212)
Q Consensus 56 i~VvGDi--HG~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~~~n 104 (212)
++|-||| .|+-....++.+.. -+...|..+++++|||+....+
T Consensus 37 ~v~tGDl~~~~~~~~~~~~~~~l------~~~~~~~~~~~vpGNHD~~~~~ 81 (301)
T COG1409 37 LVVTGDLTNDGEPEEYRRLKELL------ARLELPAPVIVVPGNHDARVVN 81 (301)
T ss_pred EEEccCcCCCCCHHHHHHHHHHH------hhccCCCceEeeCCCCcCCchH
Confidence 6677885 33333333322211 1456788899999999987654
No 93
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=28.42 E-value=91 Score=26.90 Aligned_cols=18 Identities=28% Similarity=0.146 Sum_probs=10.2
Q ss_pred hhhhhcCCcEEEeccccccc
Q 028167 82 ALKVRYPQRITILRGNHESR 101 (212)
Q Consensus 82 ~lKl~~P~~v~lLRGNHE~~ 101 (212)
+++..-++ ++.-||||..
T Consensus 78 ~ln~~g~d--~~~lGNHe~d 95 (277)
T cd07410 78 AMNALGYD--AGTLGNHEFN 95 (277)
T ss_pred HHHhcCCC--EEeecccCcc
Confidence 44444444 3444999964
No 94
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=24.70 E-value=57 Score=27.84 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=11.0
Q ss_pred CcEEEeccccccc
Q 028167 89 QRITILRGNHESR 101 (212)
Q Consensus 89 ~~v~lLRGNHE~~ 101 (212)
--++.+.||||..
T Consensus 71 ~P~~~v~GNHD~~ 83 (277)
T cd07378 71 VPWYLVLGNHDYS 83 (277)
T ss_pred CCeEEecCCcccC
Confidence 4589999999976
No 95
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=24.35 E-value=57 Score=26.57 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=12.7
Q ss_pred hcCCcEEEeccccccc
Q 028167 86 RYPQRITILRGNHESR 101 (212)
Q Consensus 86 ~~P~~v~lLRGNHE~~ 101 (212)
.....++.++|||+..
T Consensus 67 ~~~~~v~~v~GNHD~~ 82 (217)
T cd07398 67 DRGTRVYYVPGNHDFL 82 (217)
T ss_pred HCCCeEEEECCCchHH
Confidence 4456799999999964
No 96
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=24.11 E-value=1.3e+02 Score=26.30 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=8.6
Q ss_pred hhhcCCcEEEeccccccc
Q 028167 84 KVRYPQRITILRGNHESR 101 (212)
Q Consensus 84 Kl~~P~~v~lLRGNHE~~ 101 (212)
+..-.+-+.+ ||||..
T Consensus 72 n~~g~Da~~~--GNHEfD 87 (285)
T cd07405 72 NLVGYDAMAV--GNHEFD 87 (285)
T ss_pred HhhCCcEEee--cccccc
Confidence 3333344433 899854
No 97
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=24.03 E-value=1.5e+02 Score=21.16 Aligned_cols=39 Identities=13% Similarity=0.340 Sum_probs=30.4
Q ss_pred CCCCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 028167 6 LSTDTTTDLDEQISQLMQCKPLSEPQVKALCEKAKEILME 45 (212)
Q Consensus 6 ~~~~~~~~l~~~i~~~~~~~~l~~~~~~~Ll~~a~~il~~ 45 (212)
+.+++..+|-.+-+.+.+.+ ++.+++..||+-=..+|+.
T Consensus 26 ~~~Vs~~EI~~~Eq~Li~eG-~~~eeiq~LCdvH~~lf~~ 64 (71)
T PF04282_consen 26 FSDVSASEISAAEQELIQEG-MPVEEIQKLCDVHAALFKG 64 (71)
T ss_pred HCCCCHHHHHHHHHHHHHcC-CCHHHHHHHhHHHHHHHHH
Confidence 34566667777888888844 9999999999988888764
No 98
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=23.17 E-value=64 Score=27.81 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=12.9
Q ss_pred cCCcEEEecccccccc
Q 028167 87 YPQRITILRGNHESRQ 102 (212)
Q Consensus 87 ~P~~v~lLRGNHE~~~ 102 (212)
.+..++.++||||...
T Consensus 75 ~~~p~~~v~GNHD~~~ 90 (256)
T cd07401 75 NKEKWFDIRGNHDLFN 90 (256)
T ss_pred CcceEEEeCCCCCcCC
Confidence 3577899999999853
No 99
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=22.19 E-value=2.5e+02 Score=24.43 Aligned_cols=11 Identities=36% Similarity=0.604 Sum_probs=9.6
Q ss_pred cEEEecccccc
Q 028167 90 RITILRGNHES 100 (212)
Q Consensus 90 ~v~lLRGNHE~ 100 (212)
-++.+.|||+-
T Consensus 86 pv~~VpGNHDi 96 (257)
T cd08163 86 MVESLPGNHDI 96 (257)
T ss_pred eEEEeCCCccc
Confidence 48899999995
No 100
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=21.17 E-value=1.7e+02 Score=26.09 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCCCcccccCceeEeccCCC--CHHHHHHHHHHcCchhhhhhhhcCCcEEEecccccccch
Q 028167 33 KALCEKAKEILMEESNVQPVKSPVTICGDIHG--QFHDLAELFQIGGKLLVALKVRYPQRITILRGNHESRQI 103 (212)
Q Consensus 33 ~~Ll~~a~~il~~ep~ll~i~~pi~VvGDiHG--~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~~~ 103 (212)
.+..+.+.++-..+| .=+.+.||+=. +........ ...-|+.-|-.+|.+-||||...-
T Consensus 60 ~~~~~~~~~i~~~~~------DlivltGD~~~~~~~~~~~~~~------~~L~~L~~~~gv~av~GNHd~~~~ 120 (284)
T COG1408 60 EEKLALLIAIANELP------DLIVLTGDYVDGDRPPGVAALA------LFLAKLKAPLGVFAVLGNHDYGVD 120 (284)
T ss_pred HHHHHHHHHHHhcCC------CEEEEEeeeecCCCCCCHHHHH------HHHHhhhccCCEEEEecccccccc
Confidence 455556666666666 23667777654 233332222 223477889999999999986543
No 101
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=20.69 E-value=81 Score=30.48 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=43.9
Q ss_pred eeEeccCCCCHHHHHHHHHHcCchhhhhhhhcCCcEEEecccccccchhhhc-ccHHHHHHhhCChhhHHHHHhhhcccc
Q 028167 56 VTICGDIHGQFHDLAELFQIGGKLLVALKVRYPQRITILRGNHESRQITQVY-GFYDECLRKYGNANIWKIFTDLFDYFP 134 (212)
Q Consensus 56 i~VvGDiHG~~~dL~~if~~~G~ll~~lKl~~P~~v~lLRGNHE~~~~n~~y-gF~~e~~~kyg~~~~~~~~~~~F~~LP 134 (212)
=.++-|++.||..+.++|...- ---.+++.+|||+.......- .|....+..|. ..+-.|-.=|
T Consensus 285 eL~i~di~~qy~~~A~~L~~vp---------~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf~------~~n~~~v~NP 349 (481)
T COG1311 285 ELVIADIYEQYEELAEFLDQVP---------EHIKVFIMPGNHDAVRQALPQPHFPELIKSLFS------LNNLLFVSNP 349 (481)
T ss_pred ccccccchHHHHHHHHHHhhCC---------CCceEEEecCCCCccccccCCCCcchhhccccc------ccceEecCCC
Confidence 4456688888888888876541 123578999999987654332 34444444442 1111111112
Q ss_pred ccccc-CceEEEEcCC
Q 028167 135 LTALS-QKYSVCMVGC 149 (212)
Q Consensus 135 laavi-~~~ilc~HGG 149 (212)
.-.-+ +..++..||-
T Consensus 350 ~~~~l~G~~vL~~hG~ 365 (481)
T COG1311 350 ALVSLHGVDVLIYHGR 365 (481)
T ss_pred cEEEECCEEEEEecCC
Confidence 21112 5568888884
No 102
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=20.21 E-value=1.7e+02 Score=27.52 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=11.7
Q ss_pred cEEEecccccccc
Q 028167 90 RITILRGNHESRQ 102 (212)
Q Consensus 90 ~v~lLRGNHE~~~ 102 (212)
-||.+.|||++..
T Consensus 112 PVf~I~GNHD~p~ 124 (405)
T TIGR00583 112 PVFSIHGNHDDPS 124 (405)
T ss_pred CEEEEcCCCCCcc
Confidence 6999999999875
Done!