BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028169
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 97/139 (69%)
Query: 34 AAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFI 93
++P+HDLE GP P V ++EI KG + KYELDK +GL+K+DRVLYS YP +YG I
Sbjct: 8 GSNPFHDLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGII 67
Query: 94 PRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 153
PRT ED DP D++V+M+EPV P + + R IGL MID G+KD K++AV +DP F+ +
Sbjct: 68 PRTWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDW 127
Query: 154 KDIKELPPHRLAEIRRFFE 172
KDI ++P L EI FF+
Sbjct: 128 KDIDDVPKAFLDEIAHFFK 146
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|B Chain B, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|C Chain C, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 195
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 95/137 (69%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+HDLE GP P V ++EI KG + KYELDK +GL+K+DRVLY+ YP +YG IPR
Sbjct: 19 NPFHDLEPGPNVPEVVYALIEIPKGSRNKYELDKETGLLKLDRVLYTPFHYPVDYGIIPR 78
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T ED DP D++V+M+EP P + + R IGL MID G+KD K++AV +DP F+ +KD
Sbjct: 79 TWYEDGDPFDIMVIMREPTYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKD 138
Query: 156 IKELPPHRLAEIRRFFE 172
I ++P L EI FF+
Sbjct: 139 ISDVPKAFLDEIAHFFK 155
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
Thermococcus Thioreducens Bound To Hydrolyzed Product At
0.99 Angstrom Resolution
Length = 178
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 96/137 (70%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+H+LE GP P V ++EI KG + KYELDKA+GL+K+DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T +D DP D++V+M+EPV P + + R IG+M M D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 156 IKELPPHRLAEIRRFFE 172
I ++P L EI FF+
Sbjct: 122 ISDVPKAFLDEIAHFFQ 138
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
Complex With Substrate
pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
Length = 178
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 95/137 (69%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+H+LE GP P V ++EI KG + KYELDK +GL+K+DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T +D DP D++V+M+EPV P + + R IG+M M D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 156 IKELPPHRLAEIRRFFE 172
I ++P L EI FF+
Sbjct: 122 ISDVPKAFLDEIAHFFQ 138
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|B Chain B, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|C Chain C, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|D Chain D, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|E Chain E, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|F Chain F, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
Length = 178
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 91/137 (66%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+H+LE GP P V ++EI KG + KYELDK +GL+K+DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T +D DP D+ V+ +EPV P + + R IG+ D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIXVIXREPVYPLTIIEARPIGIXKXEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 156 IKELPPHRLAEIRRFFE 172
I ++P L EI FF+
Sbjct: 122 ISDVPKAFLDEIAHFFQ 138
>pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 86/134 (64%), Gaps = 2/134 (1%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
L G AP V N +VEI +G +KYE D G+IKVDRVLY+S+ YP NYGFIP T+ ED
Sbjct: 3 LSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEED 62
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKE 158
DP+DVLV+ + PGS + R IG++ M D+ +D KI+AV D DP F + KDI +
Sbjct: 63 GDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDIND 122
Query: 159 LPPHRLAEIRRFFE 172
LP +I FFE
Sbjct: 123 LPQATKNKIVHFFE 136
>pdb|2BQX|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
pdb|2BQY|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
Length = 173
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 3/134 (2%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
LE+ A ++C V+EI K +KYELDK SG + VDRVLY + YP NYGF+P T+ D
Sbjct: 6 LEVSHDADSLC-VVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSD 64
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKE 158
DP+D LVL GS ++ R +G++ M D+ D+K+IA+ D DP + KDI +
Sbjct: 65 GDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDD 124
Query: 159 LPPHRLAEIRRFFE 172
L H L +I+ FFE
Sbjct: 125 LSKHTLDKIKHFFE 138
>pdb|1YGZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
Length = 173
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 3/134 (2%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
LE+ A ++C V+EI K +KYELDK SG + VDRVLY + YP NYGF+P T+ D
Sbjct: 6 LEVSHDADSLC-VVIEISKHSNIKYELDKESGALXVDRVLYGAQNYPANYGFVPNTLGSD 64
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKE 158
DP+D LVL GS ++ R +G++ D+ D+K+IA+ D DP + KDI +
Sbjct: 65 GDPVDALVLSDVAFQAGSVVKARLVGVLNXEDESGXDEKLIALPIDKIDPTHSYVKDIDD 124
Query: 159 LPPHRLAEIRRFFE 172
L H L +I+ FFE
Sbjct: 125 LSKHTLDKIKHFFE 138
>pdb|3SW5|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
Length = 180
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 40 DLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
++ +G P N +VE+ GG+ +KYE+DK SG + VDR LY+S+VYP NYGF+P T+
Sbjct: 9 EIAVGKNPPEDVNVIVEVSLGGQPIKYEMDKKSGALFVDRFLYTSMVYPGNYGFVPHTLS 68
Query: 99 EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD--PEFRHYKDI 156
ED DP+DVL+ P+LPG + IG + M D G KD+KIIA+ + + D
Sbjct: 69 EDGDPIDVLICNTRPLLPGCVINVYPIGALIMEDDGGKDEKIIAIPTPKLTQRYNNIHDY 128
Query: 157 KELPPHRLAEIRRFFE 172
+LP L +I FFE
Sbjct: 129 TDLPEITLKQIEHFFE 144
>pdb|2UXS|A Chain A, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|B Chain B, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|C Chain C, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
Length = 169
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
+ +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ +D DP+D LVL+
Sbjct: 11 DVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLP 70
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
+PV PG + R +G+ M+D+ DDK++ V A DP + H +DI ++P L I+ FF
Sbjct: 71 QPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFF 130
>pdb|1SXV|A Chain A, 1.3a Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph5.0
Length = 172
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
+ +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ +D DP+D LVL+
Sbjct: 14 DVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLP 73
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
+PV PG + R +G+ M+D+ DDK++ V A DP + H +DI ++P L I+ FF
Sbjct: 74 QPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFF 133
>pdb|1WCF|A Chain A, 1.54 A Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph7.0
Length = 171
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
+ +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ +D DP+D LVL+
Sbjct: 13 DVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLP 72
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
+PV PG + R +G+ M+D+ DDK++ V A DP + H +DI ++P L I+ FF
Sbjct: 73 QPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFF 132
>pdb|4ECP|A Chain A, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
pdb|4ECP|B Chain B, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
Length = 167
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 79/128 (61%)
Query: 44 GPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDP 103
GPG+ + +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ ED DP
Sbjct: 1 GPGSMVQFDVTIEIPKGQRNKYEVDHKTGRVRLDRYLYTPMAYPTDYGFIEDTLGEDGDP 60
Query: 104 MDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHR 163
+D LVL+ EP+ PG + R +G+ M+D+ DDK++ V +D + H I ++P
Sbjct: 61 LDALVLLPEPLFPGVLVEARPVGMFRMVDEHGGDDKVLCVPVNDHRWDHIHGIIDVPTFE 120
Query: 164 LAEIRRFF 171
L I+ FF
Sbjct: 121 LDAIKHFF 128
>pdb|3FQ3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|C Chain C, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|D Chain D, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|E Chain E, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|F Chain F, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|G Chain G, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|H Chain H, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|I Chain I, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|J Chain J, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|K Chain K, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|L Chain L, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
Length = 197
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICE 99
+ IG P N ++E+ GG+ +KYE+DK +G + VDR LY+ + YP NYGF+P T+ E
Sbjct: 27 ISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSE 86
Query: 100 DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYK--DIK 157
D DP+DVLV P++PG + R IG++ M D KD+KIIAV + R+ K D
Sbjct: 87 DGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYT 146
Query: 158 ELPPHRLAEIRRFFE 172
++P L +I FFE
Sbjct: 147 DMPEITLKQIAHFFE 161
>pdb|2PRD|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Thermus Thermophilus
Length = 174
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 80/132 (60%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
L +G AP V + V+E+ +G KYE D G IK+DRVL + YP +YGFIP T+ ED
Sbjct: 6 LPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAED 65
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELP 160
DP+D LVL P+LPG + R +GL+ M D+ D K+I V A+D H +DI ++P
Sbjct: 66 GDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVP 125
Query: 161 PHRLAEIRRFFE 172
EI+ FFE
Sbjct: 126 EGVKQEIQHFFE 137
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3EMJ|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|G Chain G, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|H Chain H, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|I Chain I, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|J Chain J, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|K Chain K, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|L Chain L, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
Length = 173
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 52 NCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLM 110
N ++EI G +KYE DK SG + VDR + +++ YP NYGFIP T+ D DP+DVLV+
Sbjct: 17 NVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVA 76
Query: 111 QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIR 168
PV+PGS ++CRAIG++ M D+ D+KIIAV D F H K++ +L I
Sbjct: 77 HHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIV 136
Query: 169 RFFE 172
FFE
Sbjct: 137 HFFE 140
>pdb|3D63|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3EIY|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound Pyrophosphate
pdb|3EIZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei, H32 Crystal Form
pdb|3EJ0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound
N-(Pyridin-3-Ylmethyl) Aniline, H32 Crystal Form
pdb|3EJ2|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound 5-Amino-1-(4-
Chlorophenyl)-1h-Pyrazole-4-Carbonitrile, H32 Crystal
Form
pdb|3GVF|A Chain A, 1.7 Angstrom Crystal Structure Of Inorganic
Pyrophosphatase From Burkholderia Pseudomallei Bound
With Phosphate
Length = 196
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 26 SSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSV 84
SMS +V A G P N ++EI + VKYE DKA GL+ VDR + + +
Sbjct: 20 GSMSFSNVPA--------GKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGM 71
Query: 85 VYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVC 144
YP NYGFIP+T+ D DP+DVLV+ P+L GS +R RA+G++ M D+ D K++AV
Sbjct: 72 RYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVP 131
Query: 145 ADD--PEFRHYKDIKELPPHRLAEIRRFFE 172
D P + K I ++P + +I+ FFE
Sbjct: 132 HDKVCPMTANLKSIDDVPAYLKDQIKHFFE 161
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
Coli
Length = 175
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS +RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFE 172
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
Pyrophosphatase
pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
Pyrophosphatase
pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
Pyrophosphate And Fluoride
pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
Pyrophosphatase From Escherichia Coli
Length = 175
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFE 172
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|3LD3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
pdb|3LD3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
Length = 199
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 40 DLEIGPGAPAVCNCVVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
D+ G AP N V+E+ + VKYE D+ +G + VDR L +++ YP NYGFIP TI
Sbjct: 26 DIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIA 85
Query: 99 EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDI 156
D DP+DVLVL + PV+PG+ + R +G++ M D+ +D K++AV A D + + +
Sbjct: 86 GDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNY 145
Query: 157 KELPPHRLAEIRRFF 171
+LP L I FF
Sbjct: 146 SDLPSSFLDSISHFF 160
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS +RCR +G++ M ++ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTNEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFE 172
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + V+R + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVNRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS +RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFE 172
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ + D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLNGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS +RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFE 172
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
Pyrophosphatase
Length = 175
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VD+ + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P+DVLV P+ PGS RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFE 172
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 44 GPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P V+EI +KYE+DK SG + VDR + +++ YP NYG+I T+ D D
Sbjct: 8 GKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTLSLDGD 67
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV--CADDPEFRHYKDIKELP 160
P++VLV P+ PGS RCR +G++ M D+ +D K++AV E+ H KD+ +LP
Sbjct: 68 PVNVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLP 127
Query: 161 PHRLAEIRRFFE 172
A+I FFE
Sbjct: 128 ELLKAQIAHFFE 139
>pdb|3LO0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Ehrlichia Chaffeensis
Length = 193
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Query: 44 GPGAPAVCNCVVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSD 102
G P N ++EI + VKYE DK L VDR L +S+ YP NYGFIP T D D
Sbjct: 30 GDNVPKEINVIIEISQNSCPVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFIPHTCAGDGD 89
Query: 103 PMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELP 160
P+DVLV + PV+ G+ +R R +G++ M D+ +D KI+AV D + + KD + P
Sbjct: 90 PVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQYYNNIKDYSDFP 149
Query: 161 PHRLAEIRRFF 171
L I FF
Sbjct: 150 VSFLNSISHFF 160
>pdb|3TR4|A Chain A, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|B Chain B, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|C Chain C, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|D Chain D, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|E Chain E, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|F Chain F, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
Length = 178
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 52 NCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLM 110
N ++EI GG+VKYE DK G + VDR +S YP NYGF+P T+ +D DP+DVLVL
Sbjct: 18 NVIIEIPANGGEVKYEYDKELGFLTVDRFXPTSXRYPCNYGFVPSTLAQDGDPLDVLVLT 77
Query: 111 QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAV-----CADDPEFRHYKDIKELPPHRLA 165
PV PG R RA+G+ D+ +D K++AV C + KDI L L
Sbjct: 78 PVPVQPGVLXRVRALGIXKXEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSL---LLD 134
Query: 166 EIRRFFE 172
I FFE
Sbjct: 135 AISHFFE 141
>pdb|3I4Q|A Chain A, Structure Of A Putative Inorganic Pyrophosphatase From The
Oil- Degrading Bacterium Oleispira Antarctica
Length = 176
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 63 VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRC 122
+KYE+DK + VDR + YP NYG+I T+ +D D +DVLV+ PV PGS +R
Sbjct: 30 IKYEIDKDXDALLVDRFXATPXFYPANYGYINNTLADDGDALDVLVITPYPVAPGSVIRA 89
Query: 123 RAIGLMPMIDQGEKDDKIIAVCADDPE--FRHYKDIKELPPHRLAEIRRFFE 172
R +G++ D+ D+K++AV + + DI ++P +I FFE
Sbjct: 90 RPVGVLKXSDEAGGDEKLLAVPHEKLTQLYNDIHDIDDVPQLLKDQIVHFFE 141
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D A G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTAKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G +K R + Y HNYG P+T
Sbjct: 43 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLKFVRNCFPHHGYIHNYGAFPQTWE 102
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 103 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 162
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 163 DPLAPKLNDIEDVEKYFPGLLRATNEWF 190
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITREETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 43 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 102
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 103 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 162
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 163 DPLAPKLNDIEDVEKYFPGLLRATNEWF 190
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HN+G P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNFGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VV+I + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVDIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP++VL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPINVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D++P+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNEPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP++VL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIEVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ D+DP+DVL + + G + +A+G+M ++D+GE + K+IA+ +
Sbjct: 102 DPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETEWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 50 VCNCVVEIGKGGKVKYEL-----------DKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ N VVEI + K E+ D G ++ R + Y HNYG P+T
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWE 101
Query: 99 E------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
+ ++DP+DVL + + G + +A+G+M ++D+GE D K+IA+ +
Sbjct: 102 DPNVSHPETKAVGENDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIN 161
Query: 147 D---PEFRHYKDIKELPPHRLAEIRRFF 171
D P+ +D+++ P L +F
Sbjct: 162 DPLAPKLNDIEDVEKYFPGLLRATNEWF 189
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 25/147 (17%)
Query: 50 VCNCVVEIGKGGKVKYELDK----------ASGLIKVDRVLYSSVVYPHNYGFIPRTICE 99
+ N VVEI + K E+ K G ++ R + Y HNYG P+T +
Sbjct: 42 IFNMVVEIPRWTNAKLEITKEETLNPIIQNTKGKLRFVRNCFPHHGYIHNYGAFPQTWED 101
Query: 100 ------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD 147
D++P+DVL + + G +A+G+M ++D+GE D K+IA+ +D
Sbjct: 102 PNVSHPETKAVGDNNPIDVLQIGETIAYTGQVKEVKALGIMALLDEGETDWKVIAIDIND 161
Query: 148 ---PEFRHYKDIKELPPHRLAEIRRFF 171
P+ +D+++ P L +F
Sbjct: 162 PLAPKLNDIEDVEKYFPGLLRATDEWF 188
>pdb|1PDA|A Chain A, Structure Of Porphobilinogen Deaminase Reveals A Flexible
Multidomain Polymerase With A Single Catalytic Site
Length = 313
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 33 VAAHPWHDLEIGP----GAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSS----V 84
+A+HP +E+ P G + + ++G G EL+ A + D ++S V
Sbjct: 28 MASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPV 87
Query: 85 VYPHNYGFIPRTICEDSDPMDVLV 108
+P G + TICE DP D V
Sbjct: 88 EFPQGLGLV--TICEREDPRDAFV 109
>pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase
pdb|1GTK|A Chain A, Time-Resolved And Static-Ensemble Structural Chemistry Of
Hydroxymethylbilane Synthase
Length = 313
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 33 VAAHPWHDLEIGP----GAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSS----V 84
+A+HP +E+ P G + + ++G G EL+ A + D ++S V
Sbjct: 28 MASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPV 87
Query: 85 VYPHNYGFIPRTICEDSDPMDVLV 108
+P G + TICE DP D V
Sbjct: 88 EFPQGLGLV--TICEREDPRDAFV 109
>pdb|1YPN|A Chain A, Reduced Form Hydroxymethylbilane Synthase (K59q Mutant)
Crystal Structure After 2 Hours In A Flow Cell
Determined By Time-Resolved Laue Diffraction
Length = 313
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 33 VAAHPWHDLEIGP----GAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSS----V 84
+A+HP +E+ P G + + ++G G EL+ A + D ++S V
Sbjct: 28 MASHPGLVVELVPMVTRGDVILDTPLAKVGGQGLFVKELEVALLENRADIAVHSMKDVPV 87
Query: 85 VYPHNYGFIPRTICEDSDPMDVLV 108
+P G + TICE DP D V
Sbjct: 88 EFPQGLGLV--TICEREDPRDAFV 109
>pdb|1AH5|A Chain A, Reduced Form Selenomethionine-Labelled Hydroxymethylbilane
Synthase Determined By Mad
Length = 313
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 34 AAHPWHDLEIGP----GAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSS----VV 85
A+HP +E+ P G + + ++G G EL+ A + D ++S V
Sbjct: 29 ASHPGLVVELVPXVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSXKDVPVE 88
Query: 86 YPHNYGFIPRTICEDSDPMDVLV 108
+P G + TICE DP D V
Sbjct: 89 FPQGLGLV--TICEREDPRDAFV 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,942,061
Number of Sequences: 62578
Number of extensions: 291284
Number of successful extensions: 760
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 47
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)