Query 028169
Match_columns 212
No_of_seqs 127 out of 967
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 7.5E-66 1.6E-70 437.5 16.5 170 27-199 1-170 (188)
2 PLN02707 Soluble inorganic pyr 100.0 5E-65 1.1E-69 451.5 17.0 191 11-203 34-247 (267)
3 PRK00642 inorganic pyrophospha 100.0 9.1E-65 2E-69 435.7 16.4 171 31-201 5-194 (205)
4 PRK01250 inorganic pyrophospha 100.0 1.1E-61 2.4E-66 408.3 15.6 157 36-192 1-161 (176)
5 KOG1626 Inorganic pyrophosphat 100.0 1.9E-61 4.2E-66 424.7 10.0 194 11-205 5-225 (279)
6 cd00412 pyrophosphatase Inorga 100.0 8.5E-59 1.8E-63 384.1 14.3 149 49-199 1-149 (155)
7 PRK02230 inorganic pyrophospha 100.0 9.3E-58 2E-62 386.8 15.1 149 49-199 3-151 (184)
8 PF00719 Pyrophosphatase: Inor 100.0 1.1E-55 2.5E-60 365.2 10.3 143 52-197 1-144 (156)
9 COG0221 Ppa Inorganic pyrophos 100.0 5.8E-54 1.3E-58 360.1 13.6 158 36-194 1-159 (171)
10 KOG1626 Inorganic pyrophosphat 94.6 0.042 9.1E-07 49.8 4.1 62 6-67 6-71 (279)
11 PF07177 Neuralized: Neuralize 45.4 22 0.00048 25.7 2.6 22 105-126 30-51 (69)
12 smart00588 NEUZ domain in neur 39.1 40 0.00087 26.8 3.5 46 100-149 26-71 (123)
13 cd05694 S1_Rrp5_repeat_hs2_sc2 36.3 27 0.00058 25.1 1.9 27 90-126 30-56 (74)
14 PF01230 HIT: HIT domain; Int 30.9 20 0.00043 26.4 0.4 68 136-209 25-93 (98)
15 PF08437 Glyco_transf_8C: Glyc 26.7 30 0.00065 24.2 0.8 13 33-45 11-23 (57)
16 COG4766 EutQ Ethanolamine util 25.6 56 0.0012 28.1 2.3 29 55-91 146-174 (176)
17 cd01460 vWA_midasin VWA_Midasi 25.4 32 0.0007 31.1 0.9 27 148-174 237-263 (266)
18 cd05695 S1_Rrp5_repeat_hs3 S1_ 24.8 63 0.0014 22.4 2.1 32 90-127 25-56 (66)
19 PF06249 EutQ: Ethanolamine ut 24.8 55 0.0012 27.5 2.1 27 56-90 124-150 (152)
20 PF05182 Fip1: Fip1 motif; In 23.7 24 0.00052 24.1 -0.2 10 88-97 24-33 (45)
21 KOG1439 RAB proteins geranylge 22.8 1.7E+02 0.0036 28.7 5.2 54 102-172 3-56 (440)
22 PF11969 DcpS_C: Scavenger mRN 21.7 1.1E+02 0.0023 23.8 3.1 23 140-166 37-59 (116)
23 cd05706 S1_Rrp5_repeat_sc10 S1 20.8 94 0.002 21.3 2.4 15 112-126 46-60 (73)
24 PTZ00162 DNA-directed RNA poly 20.2 2.1E+02 0.0045 24.2 4.7 38 111-153 134-171 (176)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=7.5e-66 Score=437.46 Aligned_cols=170 Identities=80% Similarity=1.301 Sum_probs=159.8
Q ss_pred ecccCCcccCCCCCCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEEeeeccccccCccccCccccccCCCCCcceE
Q 028169 27 SMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDV 106 (212)
Q Consensus 27 ~~~~~~~~~spwHdIpl~~~~~~~vn~VVEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDv 106 (212)
+|+++..++|||||||++++.++.+||||||||||++|||+|+++|.|++||++++++.||||||||||||++|||||||
T Consensus 1 ~~~~~~~~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDv 80 (188)
T PLN02373 1 SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 80 (188)
T ss_pred CcccccccCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEE
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccCCcceEEEEEeeeEEeeeCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHHHhhcccCCcceeeh
Q 028169 107 LVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYS 186 (212)
Q Consensus 107 lvl~~~p~~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~leg~~v~~~~ 186 (212)
|||++.|++||++++||+||+|+|+|+||.|||||||+.+||+|++|+|++|||++++++|+|||++||.++||.+..
T Consensus 81 lvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~v~v-- 158 (188)
T PLN02373 81 LVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAV-- 158 (188)
T ss_pred EEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCeEEe--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred hhhhccccceeec
Q 028169 187 LIDYLSQHSAVST 199 (212)
Q Consensus 187 ~~d~~~~~~~~~~ 199 (212)
..++++..|.+.
T Consensus 159 -~g~~~~~~A~~~ 170 (188)
T PLN02373 159 -NDFLPAEAAIEA 170 (188)
T ss_pred -CCccCHHHHHHH
Confidence 455555555443
No 2
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=5e-65 Score=451.50 Aligned_cols=191 Identities=29% Similarity=0.434 Sum_probs=174.6
Q ss_pred cccCCCCCCcceeeeeecccCCcccCCCCCCCCCCCCCCeeEEEEeeCCCCCceEEEecC--CCCeEEeeeccccccCcc
Q 028169 11 NNSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKA--SGLIKVDRVLYSSVVYPH 88 (212)
Q Consensus 11 ~~~~g~~~~~~~r~~~~~~~~~~~~spwHdIpl~~~~~~~vn~VVEIPrgs~~KyEid~~--~g~i~~Dr~l~~~~~yP~ 88 (212)
..++|+++|.+||+|+. ...|+.+|||||||++ ..+++|||||||||||++|||++++ .+.|+|||.+...+.||+
T Consensus 34 ~~~~G~~~t~~~r~~~~-~~~g~~~spwHdIpl~-~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~yP~ 111 (267)
T PLN02707 34 VEEEGEAETLDYRVFFS-DGSGKKVSPWHDIPLH-AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDYPY 111 (267)
T ss_pred EEeecCCCCcceEEEEE-CCCCCccCchhcCCCC-CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEECCC
Confidence 34679999999999964 4568889999999999 5589999999999999999999977 567999999888778886
Q ss_pred ----ccCcccccc-------------CCCCCcceEEEecCcccCCcceEEEEEeeeEEeeeCCCCCcEEEEEecCCCccc
Q 028169 89 ----NYGFIPRTI-------------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFR 151 (212)
Q Consensus 89 ----NYGfIPqT~-------------~gDgDPLDvlvl~~~p~~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~~~ 151 (212)
||||||||| +|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||+|+
T Consensus 112 ~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~~ 191 (267)
T PLN02707 112 NINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKAS 191 (267)
T ss_pred cCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCccc
Confidence 999999998 489999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhH---HHHHHHHHHHhhcccCCcceeehhh-hhccccceeeccccc
Q 028169 152 HYKDIKELPPHR---LAEIRRFFEDCIHSFVFIILSYSLI-DYLSQHSAVSTTPNM 203 (212)
Q Consensus 152 ~i~di~Dl~~~~---l~~I~~fF~~YK~leg~~v~~~~~~-d~~~~~~~~~~~~~~ 203 (212)
+|+||+||+++. +++|+|||++||.++||++|.|++. +++++..|++.--..
T Consensus 192 ~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~ 247 (267)
T PLN02707 192 LVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEET 247 (267)
T ss_pred ccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHH
Confidence 999999998665 8999999999999999999999987 899999888765433
No 3
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=9.1e-65 Score=435.74 Aligned_cols=171 Identities=41% Similarity=0.651 Sum_probs=162.5
Q ss_pred CCcccCCCCCCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEEeeeccccccCccccCccccccC------------
Q 028169 31 RSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC------------ 98 (212)
Q Consensus 31 ~~~~~spwHdIpl~~~~~~~vn~VVEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~------------ 98 (212)
.+..+|||||||++++.++.|||||||||||++|||+|+++|.+++||++++++.||||||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~~~~~~~ 84 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGKLSGEQS 84 (205)
T ss_pred cccccCccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccccccccc
Confidence 45677999999999988999999999999999999999999999999999999999999999999995
Q ss_pred ------CCCCcceEEEecCcccCCcce-EEEEEeeeEEeeeCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHH
Q 028169 99 ------EDSDPMDVLVLMQEPVLPGSF-LRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171 (212)
Q Consensus 99 ------gDgDPLDvlvl~~~p~~~G~v-~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF 171 (212)
|||||||||||++.|++||++ ++||+||+|+|+|+||+|||||||+.+||+|++|+|++||+++++++|+|||
T Consensus 85 ~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~~I~~fF 164 (205)
T PRK00642 85 GREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164 (205)
T ss_pred ccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHHHHHHHH
Confidence 799999999999999999995 7999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCcceeehhhhhccccceeeccc
Q 028169 172 EDCIHSFVFIILSYSLIDYLSQHSAVSTTP 201 (212)
Q Consensus 172 ~~YK~leg~~v~~~~~~d~~~~~~~~~~~~ 201 (212)
++||.++||+.+.+....+.++..|.++.-
T Consensus 165 ~~YK~legk~~k~~~~~g~~~~~~A~~vI~ 194 (205)
T PRK00642 165 LTYKATPGELIKGVEIVGIYGKEEAQKVIQ 194 (205)
T ss_pred HHHcCcccCCCCeEEECCCcCHHHHHHHHH
Confidence 999999999988888888888888877643
No 4
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.1e-61 Score=408.33 Aligned_cols=157 Identities=39% Similarity=0.670 Sum_probs=149.7
Q ss_pred CCCCCCCCCCCCCCeeEEEEeeCCCCC-ceEEEecCCCCeEEeeeccccccCccccCccccccCCCCCcceEEEecCccc
Q 028169 36 HPWHDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 114 (212)
Q Consensus 36 spwHdIpl~~~~~~~vn~VVEIPrgs~-~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~ 114 (212)
..||++|.+.+.++.|||||||||||+ +|||+|+++|.+++||++++++.||||||||||||++||||||||||++.|+
T Consensus 1 ~~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~ 80 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPYPL 80 (176)
T ss_pred CChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEecCCCC
Confidence 368999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeeeEEeeeCCCCCcEEEEEecC--CCcccCCCCCCCCChhHHHHHHHHHHHhhccc-CCcceeehhhhhc
Q 028169 115 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDCIHSF-VFIILSYSLIDYL 191 (212)
Q Consensus 115 ~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~--Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~le-g~~v~~~~~~d~~ 191 (212)
+||++++||+||+|+|+|+||+|||||||+.+ ||+|++|+|++|||++++++|+|||++||.++ ||.++..++.+-.
T Consensus 81 ~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~g~~~~~ 160 (176)
T PRK01250 81 VPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVEGWGGAE 160 (176)
T ss_pred CCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEecCccCHH
Confidence 99999999999999999999999999999998 69999999999999999999999999999998 8888887765433
Q ss_pred c
Q 028169 192 S 192 (212)
Q Consensus 192 ~ 192 (212)
.
T Consensus 161 ~ 161 (176)
T PRK01250 161 E 161 (176)
T ss_pred H
Confidence 3
No 5
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=1.9e-61 Score=424.69 Aligned_cols=194 Identities=33% Similarity=0.499 Sum_probs=176.1
Q ss_pred cccCCCCCCcceeeeeecccCCcccCCCCCCCCCCCCCCeeEEEEeeCCCCCceEEEecC-----------CCCeEEeee
Q 028169 11 NNSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKA-----------SGLIKVDRV 79 (212)
Q Consensus 11 ~~~~g~~~~~~~r~~~~~~~~~~~~spwHdIpl~~~~~~~vn~VVEIPrgs~~KyEid~~-----------~g~i~~Dr~ 79 (212)
..++|+..+++||+|+ ....+..+|||||||+.++...++|||||||||+++||||.++ +|.+|++|.
T Consensus 5 t~e~g~~~s~~~rvy~-~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n 83 (279)
T KOG1626|consen 5 TVETGKKYSLDYRVYF-PKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRN 83 (279)
T ss_pred eeeccccCCccceeee-cCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEe
Confidence 3467889999999996 3556669999999999999889999999999999999999854 467888999
Q ss_pred ccccccCccccCccccccC------------CCCCcceEEEecCcccCCcceEEEEEeeeEEeeeCCCCCcEEEEEecCC
Q 028169 80 LYSSVVYPHNYGFIPRTIC------------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD 147 (212)
Q Consensus 80 l~~~~~yP~NYGfIPqT~~------------gDgDPLDvlvl~~~p~~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~D 147 (212)
+|+...||||||||||||+ |||||||||+||+++..+|++++||+||+|+||||||+|||||||+++|
T Consensus 84 ~fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvnD 163 (279)
T KOG1626|consen 84 LFPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVND 163 (279)
T ss_pred cccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECCC
Confidence 9999999999999999997 5889999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCC---ChhHHHHHHHHHHHhhcccCCcceeehhh-hhccccceeecccccce
Q 028169 148 PEFRHYKDIKEL---PPHRLAEIRRFFEDCIHSFVFIILSYSLI-DYLSQHSAVSTTPNMHK 205 (212)
Q Consensus 148 p~~~~i~di~Dl---~~~~l~~I~~fF~~YK~leg~~v~~~~~~-d~~~~~~~~~~~~~~~~ 205 (212)
|++++++||+|| +||+|+++++|||.||.+.||+.|+|++. +|+|+.+|++.--.-|.
T Consensus 164 P~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d 225 (279)
T KOG1626|consen 164 PLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHD 225 (279)
T ss_pred cchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHH
Confidence 977777777776 68999999999999999999999999999 99999999876554443
No 6
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=8.5e-59 Score=384.05 Aligned_cols=149 Identities=48% Similarity=0.828 Sum_probs=140.5
Q ss_pred CeeEEEEeeCCCCCceEEEecCCCCeEEeeeccccccCccccCccccccCCCCCcceEEEecCcccCCcceEEEEEeeeE
Q 028169 49 AVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 128 (212)
Q Consensus 49 ~~vn~VVEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrvlG~L 128 (212)
..|||||||||||++|||+|+++|.|++||++++++.||||||||||||++|||||||+||++.|+.||++++||+||+|
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l 80 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVL 80 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHHHhhcccCCcceeehhhhhccccceeec
Q 028169 129 PMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVST 199 (212)
Q Consensus 129 ~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~leg~~v~~~~~~d~~~~~~~~~~ 199 (212)
+|+|+||+|||||||+.+||+|++|+|++|||++++++|+|||++||.++|++.+.+. .+.++..|.++
T Consensus 81 ~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~--g~~~~~~A~~~ 149 (155)
T cd00412 81 KMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEGKKEVKVA--GWKDKEEALKI 149 (155)
T ss_pred EeccCCCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCCceEEC--cCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997766654 66666666554
No 7
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=9.3e-58 Score=386.78 Aligned_cols=149 Identities=40% Similarity=0.623 Sum_probs=141.8
Q ss_pred CeeEEEEeeCCCCCceEEEecCCCCeEEeeeccccccCccccCccccccCCCCCcceEEEecCcccCCcceEEEEEeeeE
Q 028169 49 AVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLM 128 (212)
Q Consensus 49 ~~vn~VVEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrvlG~L 128 (212)
+.+||||||||||++|||+|+++|.|++||++++++.||+|||||||||++|||||||+||++.|+.||++++||+||+|
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl 82 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAM 82 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHHHhhcccCCcceeehhhhhccccceeec
Q 028169 129 PMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQHSAVST 199 (212)
Q Consensus 129 ~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~leg~~v~~~~~~d~~~~~~~~~~ 199 (212)
+|+|+||.|||||||+.+||+|++|++++|||++++++|+|||++||.++||+++++ +.+.++..|.+.
T Consensus 83 ~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk~~~~v--~g~~~~~~A~~~ 151 (184)
T PRK02230 83 KMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRKGITKV--KGFEDEKWALKE 151 (184)
T ss_pred EeccCCCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCCCeEEe--CCccCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998764 457777666554
No 8
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=1.1e-55 Score=365.23 Aligned_cols=143 Identities=50% Similarity=0.833 Sum_probs=126.9
Q ss_pred EEEEeeCCCCCceEEEecCCCCeEEeeeccccccCccccCccccccCCCCCcceEEEecCcccCCcceEEEEEeeeEEee
Q 028169 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMI 131 (212)
Q Consensus 52 n~VVEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrvlG~L~mi 131 (212)
||||||||||++|||++++++.+++||++++++.||+|||||||||++|||||||+||++.|++||++++||+||+|+|+
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~ 80 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMI 80 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEE
T ss_pred CEEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHHHhhcc-cCCcceeehhhhhcccccee
Q 028169 132 DQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHS-FVFIILSYSLIDYLSQHSAV 197 (212)
Q Consensus 132 D~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~l-eg~~v~~~~~~d~~~~~~~~ 197 (212)
|+||+|||||||+.+||+|++|++++|++++++++|++||++||.+ +++.+..- .+.++..|.
T Consensus 81 D~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~~~~---~~~~~~~A~ 144 (156)
T PF00719_consen 81 DDGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWVEVG---GWEDAEEAL 144 (156)
T ss_dssp ETTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEEEEE---EEEEHHHHH
T ss_pred eCCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeEEeC---CCcCHHHHH
Confidence 9999999999999999999999999999999999999999999999 55544443 334444443
No 9
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=5.8e-54 Score=360.12 Aligned_cols=158 Identities=44% Similarity=0.729 Sum_probs=149.2
Q ss_pred CCCCCCCCCCCCCCeeEEEEeeCCCCCceEEEecCCCCeEEeeeccccccCccccCccccccCCCCCcceEEEecCcccC
Q 028169 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 115 (212)
Q Consensus 36 spwHdIpl~~~~~~~vn~VVEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYGfIPqT~~gDgDPLDvlvl~~~p~~ 115 (212)
|+||+||++++. ..+||+||||+||++|||++++++.+.+||++++++.||+|||||||||++|||||||+|+++.|+.
T Consensus 1 ~~~~~~~~~~~~-~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi~~~p~~ 79 (171)
T COG0221 1 MDLHKIPAGPDD-EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVIGEEPLA 79 (171)
T ss_pred CCccccCCCCCc-ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEEcCcCCC
Confidence 589999999987 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEeeeEEeeeCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHHHhhcccC-Ccceeehhhhhcccc
Q 028169 116 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFV-FIILSYSLIDYLSQH 194 (212)
Q Consensus 116 ~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~leg-~~v~~~~~~d~~~~~ 194 (212)
||++++||+||+|+|+|+||.|||||||+..||+|++|++++|++.+++++|+|||++||.+|. |.+..-+|.+-..|.
T Consensus 80 pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~gw~~~~~A~ 159 (171)
T COG0221 80 PGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAK 159 (171)
T ss_pred ceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEEeccccCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 566666665544443
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=94.61 E-value=0.042 Score=49.80 Aligned_cols=62 Identities=32% Similarity=0.370 Sum_probs=52.8
Q ss_pred CCccccccCC---CCCCcceeeeeecccCCcccCCCCCCCCCCCCCCeeEEEEeeC-CCCCceEEE
Q 028169 6 GTAGSNNSGG---PPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIG-KGGKVKYEL 67 (212)
Q Consensus 6 ~~~~~~~~~g---~~~~~~~r~~~~~~~~~~~~spwHdIpl~~~~~~~vn~VVEIP-rgs~~KyEi 67 (212)
.+.|+.|+.. ....++-|+.+.|.+....+++||++-.....|-..|+++||. +++.++++.
T Consensus 6 ~e~g~~~s~~~rvy~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikq 71 (279)
T KOG1626|consen 6 VETGKKYSLDYRVYFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQ 71 (279)
T ss_pred eeccccCCccceeeecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCccee
Confidence 4567766654 4478889999999999999999999999999999999999999 788877763
No 11
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=45.40 E-value=22 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=15.7
Q ss_pred eEEEecCcccCCcceEEEEEee
Q 028169 105 DVLVLMQEPVLPGSFLRCRAIG 126 (212)
Q Consensus 105 Dvlvl~~~p~~~G~v~~vrvlG 126 (212)
..||++++|+.+|+.+++|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 4689999999999999999853
No 12
>smart00588 NEUZ domain in neuralized proteins.
Probab=39.07 E-value=40 Score=26.85 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=31.1
Q ss_pred CCCcceEEEecCcccCCcceEEEEEeeeEEeeeCCCCCcEEEEEecCCCc
Q 028169 100 DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 149 (212)
Q Consensus 100 DgDPLDvlvl~~~p~~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~ 149 (212)
+.+.-+.+|.+++|+.+|+.+.+|+.-.-..- .--=-+++-..||.
T Consensus 26 ~~~f~~givFS~rPl~~~E~~~v~i~~~~~~w----~G~l~~G~Ts~dP~ 71 (123)
T smart00588 26 ASDFCNALVFSARPLRINELFEVKIEKVVRKW----SGALRFGVTTCDPA 71 (123)
T ss_pred cCCcCceEEecCCCCcCCCEEEEEEEEecCCc----cCceEEEEecCCcc
Confidence 34466889999999999999999987432111 01123567777875
No 13
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=36.31 E-value=27 Score=25.14 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=20.5
Q ss_pred cCccccccCCCCCcceEEEecCcccCCcceEEEEEee
Q 028169 90 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIG 126 (212)
Q Consensus 90 YGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrvlG 126 (212)
=||||.+-..+. ..+.+|+.+.|+++.
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~ 56 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEK 56 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEE
Confidence 478887754433 468999999999986
No 14
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=30.87 E-value=20 Score=26.41 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=36.0
Q ss_pred CCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHHHhhcccCCcceeehhh-hhccccceeecccccceeeee
Q 028169 136 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLI-DYLSQHSAVSTTPNMHKLHCI 209 (212)
Q Consensus 136 ~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~~YK~leg~~v~~~~~~-d~~~~~~~~~~~~~~~~~~~~ 209 (212)
..+-+|.||. .++.++.|+++....++....+.-...-....+.-+.+ ...|-..+-|..|.+| +|-|
T Consensus 25 ~~gh~LVipk-----~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~v~HlH-~Hvi 93 (98)
T PF01230_consen 25 SPGHLLVIPK-----RHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQSVPHLH-FHVI 93 (98)
T ss_dssp STTEEEEEES-----STGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSSSSS-E-EEEE
T ss_pred CCeEEEEEec-----ccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCccCEEE-EEEe
Confidence 4455666665 35678888886655555554444333222222222222 3445566788888877 4443
No 15
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=26.70 E-value=30 Score=24.22 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.5
Q ss_pred cccCCCCCCCCCC
Q 028169 33 VAAHPWHDLEIGP 45 (212)
Q Consensus 33 ~~~spwHdIpl~~ 45 (212)
...|||.|+|+-+
T Consensus 11 ~~~SPWk~~pl~~ 23 (57)
T PF08437_consen 11 YKNSPWKDIPLLK 23 (57)
T ss_pred HHcCCCCCCCCcC
Confidence 4579999999863
No 16
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=25.63 E-value=56 Score=28.06 Aligned_cols=29 Identities=34% Similarity=0.744 Sum_probs=19.1
Q ss_pred EeeCCCCCceEEEecCCCCeEEeeeccccccCccccC
Q 028169 55 VEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYG 91 (212)
Q Consensus 55 VEIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NYG 91 (212)
|=|||||..++-. +|. -|++| ..||+|+-
T Consensus 146 ifiPKgssIefst---~ge---a~fly--vtyPanWq 174 (176)
T COG4766 146 IFIPKGSSIEFST---TGE---AKFLY--VTYPANWQ 174 (176)
T ss_pred EEecCCCeEEEec---cce---EEEEE--EEcccccc
Confidence 4489999887764 333 23334 68999974
No 17
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=25.42 E-value=32 Score=31.09 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=22.8
Q ss_pred CcccCCCCCCCCChhHHHHHHHHHHHh
Q 028169 148 PEFRHYKDIKELPPHRLAEIRRFFEDC 174 (212)
Q Consensus 148 p~~~~i~di~Dl~~~~l~~I~~fF~~Y 174 (212)
|-|--++|+++||.-+-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHHHHHHHHHHHHHH
Confidence 456667899999999999999999854
No 18
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=24.78 E-value=63 Score=22.37 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=21.5
Q ss_pred cCccccccCCCCCcceEEEecCcccCCcceEEEEEeee
Q 028169 90 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 127 (212)
Q Consensus 90 YGfIPqT~~gDgDPLDvlvl~~~p~~~G~v~~vrvlG~ 127 (212)
=||+|.+.-.+. ... ...+..|+.++||++.+
T Consensus 25 ~g~v~~~~l~~~-~~~-----~~~~~~G~~i~~kVi~i 56 (66)
T cd05695 25 TGTVDFLHLDPE-KSS-----KSTYKEGQKVRARILYV 56 (66)
T ss_pred eEEEEHHHcCCc-cCc-----ccCcCCCCEEEEEEEEE
Confidence 477777765321 111 44589999999999973
No 19
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=24.76 E-value=55 Score=27.47 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=14.4
Q ss_pred eeCCCCCceEEEecCCCCeEEeeeccccccCcccc
Q 028169 56 EIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNY 90 (212)
Q Consensus 56 EIPrgs~~KyEid~~~g~i~~Dr~l~~~~~yP~NY 90 (212)
=||+||...|.-. |..++....||+||
T Consensus 124 ~iPkGs~I~fst~--------~~a~~~Yv~yPa~W 150 (152)
T PF06249_consen 124 FIPKGSTITFSTP--------DYARFFYVTYPANW 150 (152)
T ss_dssp EE-TT-EEEEEEE--------EEEEEEEEEESTT-
T ss_pred EECCCCEEEEecC--------CCEEEEEEECCCcc
Confidence 3777777777642 22233446889886
No 20
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=23.69 E-value=24 Score=24.05 Aligned_cols=10 Identities=50% Similarity=0.763 Sum_probs=9.3
Q ss_pred cccCcccccc
Q 028169 88 HNYGFIPRTI 97 (212)
Q Consensus 88 ~NYGfIPqT~ 97 (212)
|||||=..||
T Consensus 24 FNYGf~E~tW 33 (45)
T PF05182_consen 24 FNYGFNEETW 33 (45)
T ss_pred cCCCCCHHHH
Confidence 8999999998
No 21
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=1.7e+02 Score=28.74 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=38.1
Q ss_pred CcceEEEecCcccCCcceEEEEEeeeEEeeeCCCCCcEEEEEecCCCcccCCCCCCCCChhHHHHHHHHHH
Q 028169 102 DPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFE 172 (212)
Q Consensus 102 DPLDvlvl~~~p~~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~~~~i~di~Dl~~~~l~~I~~fF~ 172 (212)
++-||+|||.. ..+|++=|+|..- .-|||-++.+|--=+.-.++. ++++..||+
T Consensus 3 eeyDvivlGTg------l~ecilS~~Ls~~-----gkkVLhiDrN~yYG~~saslt------l~ql~~~f~ 56 (440)
T KOG1439|consen 3 EEYDVIVLGTG------LTECILSGALSVD-----GKKVLHIDRNDYYGGESASLT------LEQLYKKFK 56 (440)
T ss_pred CceeEEEEcCC------chhheeeeeeeec-----CcEEEEEeCCCCCCcccccee------HHHHHHHhc
Confidence 46899999864 4577788888862 357999999874333334433 788888887
No 22
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=21.66 E-value=1.1e+02 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=11.2
Q ss_pred EEEEecCCCcccCCCCCCCCChhHHHH
Q 028169 140 IIAVCADDPEFRHYKDIKELPPHRLAE 166 (212)
Q Consensus 140 IIaV~~~Dp~~~~i~di~Dl~~~~l~~ 166 (212)
+|+||.+ .+|.++.||.+.-+..
T Consensus 37 ~LviPk~----~~i~sl~~L~~~~~~l 59 (116)
T PF11969_consen 37 LLVIPKD----PHIRSLRDLTPEHLPL 59 (116)
T ss_dssp EEEEESS----SS-SSGGG--GGGHHH
T ss_pred EEEEeec----CCCCChHHcCHHHHHH
Confidence 4555543 4678888886443333
No 23
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.81 E-value=94 Score=21.29 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=12.8
Q ss_pred cccCCcceEEEEEee
Q 028169 112 EPVLPGSFLRCRAIG 126 (212)
Q Consensus 112 ~p~~~G~v~~vrvlG 126 (212)
....+|+.++|+++.
T Consensus 46 ~~~~~Gd~v~~~V~~ 60 (73)
T cd05706 46 YKFKKNDIVRACVLS 60 (73)
T ss_pred cccCCCCEEEEEEEE
Confidence 347899999999988
No 24
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=20.22 E-value=2.1e+02 Score=24.17 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=25.0
Q ss_pred CcccCCcceEEEEEeeeEEeeeCCCCCcEEEEEecCCCcccCC
Q 028169 111 QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 153 (212)
Q Consensus 111 ~~p~~~G~v~~vrvlG~L~miD~gE~D~KIIaV~~~Dp~~~~i 153 (212)
...+..|+.+++|++|+- .|++ +-+.++ ...+|-...+
T Consensus 134 ~~~i~~g~~VR~rV~~v~--~~~~--~~~~i~-T~~~~~LG~~ 171 (176)
T PTZ00162 134 QIQIKPNTEVRLRLQGVR--YDAS--NLFAIA-TINSDYLGPI 171 (176)
T ss_pred cEEECCCCEEEEEEEEEE--ecCC--CcEEEE-EecCCCcCcc
Confidence 346789999999999984 3444 346666 4455544433
Done!