RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028169
(212 letters)
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 338 bits (868), Expect = e-120
Identities = 133/147 (90%), Positives = 139/147 (94%)
Query: 27 SMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVY 86
SMS RSVAAHPWHDLEIGPGAPA+ NCVVEI KG KVKYELDK +GLIKVDRVLYSSVVY
Sbjct: 1 SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVY 60
Query: 87 PHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 146
PHNYGFIPRT+CED+DP+DVLVLMQEPVLPG FLR RAIGLMPMIDQGEKDDKIIAVCAD
Sbjct: 61 PHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCAD 120
Query: 147 DPEFRHYKDIKELPPHRLAEIRRFFED 173
DPE+RHY DIKELPPHRLAEIRRFFED
Sbjct: 121 DPEYRHYTDIKELPPHRLAEIRRFFED 147
>gnl|CDD|238239 cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes
hydrolyze inorganic pyrophosphate (PPi) to two molecules
of orthophosphates (Pi). The reaction requires bivalent
cations. The enzymes in general exist as homooligomers.
Length = 155
Score = 221 bits (567), Expect = 1e-74
Identities = 70/122 (57%), Positives = 91/122 (74%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
N V+EI KG KYE+DK +G IKVDR LYSS+ YP NYGFIP+T+ +D DP+DVLV+ +
Sbjct: 4 NVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGE 63
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
EP+ PGS +R R +G++ MID+GE D K+IAV DDP + H DI ++PPH L EI+ FF
Sbjct: 64 EPLFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFF 123
Query: 172 ED 173
E
Sbjct: 124 EH 125
>gnl|CDD|189686 pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.
Length = 156
Score = 210 bits (537), Expect = 4e-70
Identities = 75/122 (61%), Positives = 92/122 (75%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
N V+EI KG +VKYE+DK SGL+ VDRVLY+S+ YP NYGFIP+T+ D DP+DVLVL
Sbjct: 1 NVVIEIPKGSRVKYEIDKESGLLPVDRVLYTSMGYPFNYGFIPQTLEGDGDPLDVLVLGP 60
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
EP+ PGS +R R IG++ MID+GE DDKIIAV DDP + KDI++LPP L EI FF
Sbjct: 61 EPLFPGSVVRVRPIGVLAMIDEGETDDKIIAVPVDDPRYDDIKDIEDLPPGLLDEIEHFF 120
Query: 172 ED 173
E
Sbjct: 121 EH 122
>gnl|CDD|223299 COG0221, Ppa, Inorganic pyrophosphatase [Energy production and
conversion].
Length = 171
Score = 183 bits (467), Expect = 3e-59
Identities = 69/137 (50%), Positives = 92/137 (67%), Gaps = 1/137 (0%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
H + GP N V+EI KG +KYE+DK +G + VDR L + + YP NYGFIP
Sbjct: 1 MDLHKIPAGP-DDEDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPN 59
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T+ +D DP+DVLV+ +EP+ PG ++ R IG++ MID+GEKDDK+IAV DP + H KD
Sbjct: 60 TLSDDGDPLDVLVIGEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKD 119
Query: 156 IKELPPHRLAEIRRFFE 172
I +LP H L EI+ FFE
Sbjct: 120 ISDLPEHLLDEIQHFFE 136
>gnl|CDD|179262 PRK01250, PRK01250, inorganic pyrophosphatase; Provisional.
Length = 176
Score = 155 bits (393), Expect = 4e-48
Identities = 62/136 (45%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 40 DLEIGPGAPAVCNCVVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
+ G P N ++EI +KYE+DK SG + VDR LY+++ YP NYGFIP T+
Sbjct: 5 KIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLS 64
Query: 99 EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDI 156
D DP+DVLV+ P++PGS +RCR +G++ M D+ +D KIIAV D PE+ H KD+
Sbjct: 65 LDGDPVDVLVVTPYPLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDV 124
Query: 157 KELPPHRLAEIRRFFE 172
+LP A+I+ FFE
Sbjct: 125 NDLPELLKAQIKHFFE 140
>gnl|CDD|179388 PRK02230, PRK02230, inorganic pyrophosphatase; Provisional.
Length = 184
Score = 154 bits (392), Expect = 7e-48
Identities = 57/121 (47%), Positives = 69/121 (57%)
Query: 52 NCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQ 111
+EI KG +KYE D+ + I VDR+L VYP NYGFI + D D +DVLV
Sbjct: 6 EVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSD 65
Query: 112 EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
+ LPG+ L R IG M MID GE D K+IAV DD H +K+LP H L EI FF
Sbjct: 66 QKFLPGTVLNARIIGAMKMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFF 125
Query: 172 E 172
Sbjct: 126 S 126
>gnl|CDD|179080 PRK00642, PRK00642, inorganic pyrophosphatase; Provisional.
Length = 205
Score = 143 bits (363), Expect = 3e-43
Identities = 70/165 (42%), Positives = 86/165 (52%), Gaps = 20/165 (12%)
Query: 26 SSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVV 85
S S A HPWH L +GP AP C +EI VKYELDKA+G +KVDR S
Sbjct: 1 MSKFPLSRA-HPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNF 59
Query: 86 YPHNYGFIPRTICE------------------DSDPMDVLVLMQEPVLPGS-FLRCRAIG 126
P YGFIPRT C D DP+D+ VL ++ + G+ L+ R IG
Sbjct: 60 CPALYGFIPRTYCGDLSGKLSGEQSGREDIKGDGDPLDICVLTEKNITHGNILLQARPIG 119
Query: 127 LMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 171
+ MID GE DDKIIAV DD + KDI E P L ++ +F
Sbjct: 120 GLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164
>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase.
Length = 267
Score = 81.0 bits (200), Expect = 2e-18
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 30/184 (16%)
Query: 15 GPPVALNERI-LSSMSHRSVAAHPWHD--LEIGPGAPAVCNCVVEIGKGGKVKYEL--DK 69
G L+ R+ S S + V+ PWHD L G G N VVEI K K E+ D+
Sbjct: 38 GEAETLDYRVFFSDGSGKKVS--PWHDIPLHAGDG---TFNFVVEIPKETSAKMEVATDE 92
Query: 70 ASGLIKVDRVLYSSVVYPH----NYGFIPRT-------------ICEDSDPMDVLVLMQE 112
IK D YP+ NYG +P+T D+DP+DV+ + +
Sbjct: 93 PFTPIKQDTKKGKLRDYPYNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGER 152
Query: 113 PVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPH---RLAEIRR 169
G L+ + +G++ MID+GE D K++A+ ADDP+ D+ ++ H L IR
Sbjct: 153 AAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRD 212
Query: 170 FFED 173
+F D
Sbjct: 213 WFRD 216
>gnl|CDD|153378 cd07366, 3MGA_Dioxygenase, Subunit B of the Class III Extradiol
ring-cleavage dioxygenase, 3-O-Methylgallate
Dioxygenase, which catalyzes the oxidization and
subsequent ring-opening of 3-O-Methylgallate.
3-O-Methylgallate Dioxygenase catalyzes the oxidization
and subsequent ring-opening of 3-O-Methylgallate (3MGA)
between carbons 2 and 3. 3-O-Methylgallate Dioxygenase
is a key enzyme in the syringate degradation pathway, in
which the syringate is first converted to
3-O-Methylgallate by O-demethylase. This enzyme is a
member of the class III extradiol dioxygenase family, a
group of enzymes which uses a non-heme Fe(II) to cleave
aromatic rings between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. LigAB-like enzymes are
usually composed of two subunits, designated A and B,
which form a tetramer composed of two copies of each
subunit. This model represents the catalytic subunit, B.
Length = 328
Score = 29.3 bits (66), Expect = 1.5
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 84 VVYPHNYGFIPRTICEDSDPMDVLVLMQ---EPVLPGSFLRCRAIG 126
V PH +GFI R I D V VL+ P P + RC G
Sbjct: 178 VGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSAR-RCFEFG 222
>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
Length = 326
Score = 28.3 bits (64), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 130 MIDQGEKDDKIIAVCAD--DPEFRHY---KDIKELPPHRL 164
+++ GE+D K+IA A +P+ R Y K+++ L +L
Sbjct: 252 LVESGERDVKVIAKAAGIGNPK-RIYFLRKEVQGLSSQQL 290
>gnl|CDD|236404 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 28.3 bits (64), Expect = 4.1
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 141 IAVCADDPEFRHYKDIKELPP-----HR--LAEIRRFFED 173
I V D+PE Y + L P HR L ++R +
Sbjct: 568 IVVVTDEPE--KYDGVARLAPGVTVHHRDELDAVQRELRE 605
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 28.0 bits (62), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 151 RHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDYLSQ 193
R+YK +K L PH+ R + +F + L YSL D L +
Sbjct: 287 RNYKKLKTLVPHQTPMPERDAVERARNFKEVNLGYSLEDALQE 329
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase;
Provisional.
Length = 353
Score = 27.1 bits (60), Expect = 7.1
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 37/101 (36%)
Query: 16 PPVALNERILSSMSHRSVAAHPWHDLEIGPGAP---------------AVC--NCVVEIG 58
P + LNER+L +S R V E+ GAP V +
Sbjct: 241 PIMNLNERVLGVLSCRYVD-------EVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNE 293
Query: 59 KGGKVKYELDKASGLIK-------------VDRVLYSSVVY 86
+GG YE+ KA G+ K VDRV+ + + +
Sbjct: 294 EGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRLAF 334
>gnl|CDD|184002 PRK13363, PRK13363, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 335
Score = 27.0 bits (60), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 87 PHNYGFIPRTICEDSDPMDVLVLMQ---EPVLPGSFLRCRAIG 126
H +GF+ R + +D+ V VL+ P P + RC A+G
Sbjct: 185 GHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQP-TPRRCIALG 226
>gnl|CDD|192725 pfam11228, DUF3027, Protein of unknown function (DUF3027). This
family of proteins with unknown function appears to be
restricted to Actinobacteria.
Length = 194
Score = 26.5 bits (59), Expect = 8.8
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 22 ERILSSMSHRSVAAHPWHDLEIGPG------APAVC 51
R+LS R AA W++ + GP APA C
Sbjct: 114 RRVLSREG-REEAAKRWYEGDYGPKSEIAKAAPASC 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.432
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,081,415
Number of extensions: 1057863
Number of successful extensions: 876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 870
Number of HSP's successfully gapped: 21
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)