RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028169
(212 letters)
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A
{Thermococcus thioreducens} PDB: 3r6e_A* 3q3l_A 3i98_A
3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Length = 178
Score = 246 bits (630), Expect = 4e-84
Identities = 69/138 (50%), Positives = 96/138 (69%)
Query: 36 HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
+P+H+LE GP P V ++EI KG + KYELDKA+GL+K+DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 96 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
T +D DP D++V+M+EPV P + + R IG+M M D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 156 IKELPPHRLAEIRRFFED 173
I ++P L EI FF+
Sbjct: 122 ISDVPKAFLDEIAHFFQR 139
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP:
b.40.5.1
Length = 174
Score = 241 bits (618), Expect = 2e-82
Identities = 59/135 (43%), Positives = 80/135 (59%)
Query: 39 HDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
L +G AP V + V+E+ +G KYE D G IK+DRVL + YP +YGFIP T+
Sbjct: 4 KSLPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLA 63
Query: 99 EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKE 158
ED DP+D LVL P+LPG + R +GL+ M D+ D K+I V A+D H +DI +
Sbjct: 64 EDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGD 123
Query: 159 LPPHRLAEIRRFFED 173
+P EI+ FFE
Sbjct: 124 VPEGVKQEIQHFFET 138
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase);
thermostability, magnesium, hydrolase; 2.70A {Sulfolobus
acidocaldarius} SCOP: b.40.5.1
Length = 173
Score = 235 bits (603), Expect = 3e-80
Identities = 67/136 (49%), Positives = 86/136 (63%), Gaps = 2/136 (1%)
Query: 40 DLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICE 99
L G AP V N +VEI +G +KYE D G+IKVDRVLY+S+ YP NYGFIP T+ E
Sbjct: 2 KLSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEE 61
Query: 100 DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIK 157
D DP+DVLV+ + PGS + R IG++ M D+ +D KI+AV D DP F + KDI
Sbjct: 62 DGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDIN 121
Query: 158 ELPPHRLAEIRRFFED 173
+LP +I FFE
Sbjct: 122 DLPQATKNKIVHFFEH 137
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S
structural genomics center for infectious disease,
ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei
1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Length = 196
Score = 236 bits (603), Expect = 7e-80
Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 26 SSMSHRSVAAHPWHDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSV 84
+ + + ++ G P N ++EI + VKYE DKA GL+ VDR + + +
Sbjct: 12 LEAQTQGPGSMSFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGM 71
Query: 85 VYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVC 144
YP NYGFIP+T+ D DP+DVLV+ P+L GS +R RA+G++ M D+ D K++AV
Sbjct: 72 RYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVP 131
Query: 145 ADD--PEFRHYKDIKELPPHRLAEIRRFFED 173
D P + K I ++P + +I+ FFE
Sbjct: 132 HDKVCPMTANLKSIDDVPAYLKDQIKHFFEQ 162
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Length = 199
Score = 236 bits (603), Expect = 9e-80
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Query: 20 LNERILSSMSHRSVAAHP--WHDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKV 76
+ + ++ ++ D+ G AP N V+E+ + VKYE D+ +G + V
Sbjct: 4 HHHHHMGTLEAQTQGPGSMNLDDIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWV 63
Query: 77 DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEK 136
DR L +++ YP NYGFIP TI D DP+DVLVL + PV+PG+ + R +G++ M D+ +
Sbjct: 64 DRFLPTAMYYPCNYGFIPNTIAGDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGE 123
Query: 137 DDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFED 173
D K++AV A D + + + +LP L I FF
Sbjct: 124 DAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSF 162
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase;
1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A
4ecp_A
Length = 172
Score = 234 bits (600), Expect = 1e-79
Identities = 50/133 (37%), Positives = 78/133 (58%)
Query: 41 LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
+ +EI KG + KYE+D +G +++DR LY+ + YP +YGFI T+ +D
Sbjct: 3 SSHHHHHHMQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDD 62
Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELP 160
DP+D LVL+ +PV PG + R +G+ M+D+ DDK++ V A DP + H +DI ++P
Sbjct: 63 GDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVP 122
Query: 161 PHRLAEIRRFFED 173
L I+ FF
Sbjct: 123 AFELDAIKHFFVH 135
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori}
PDB: 1ygz_A 2bqy_A
Length = 173
Score = 230 bits (589), Expect = 5e-78
Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 39 HDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
LE+ A ++ V+EI K +KYELDK SG + VDRVLY + YP NYGF+P T+
Sbjct: 4 EKLEVSHDADSL-CVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLG 62
Query: 99 EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDI 156
D DP+D LVL GS ++ R +G++ M D+ D+K+IA+ D DP + KDI
Sbjct: 63 SDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDI 122
Query: 157 KELPPHRLAEIRRFFED 173
+L H L +I+ FFE
Sbjct: 123 DDLSKHTLDKIKHFFET 139
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia
coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A
2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A
1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Length = 175
Score = 227 bits (581), Expect = 8e-77
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 39 HDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTI 97
++ G P V+EI +KYE+DK SG + VD+ + +++ YP NYG+I T+
Sbjct: 3 LNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTL 62
Query: 98 CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKD 155
D DP+DVLV P+ PGS RCR +G++ M D+ +D K++AV E+ H KD
Sbjct: 63 SLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKD 122
Query: 156 IKELPPHRLAEIRRFFED 173
+ +LP A+I FFE
Sbjct: 123 VNDLPELLKAQIAHFFEH 140
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase;
ssgcid, inorganic phosphatase; 1.90A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Length = 197
Score = 226 bits (579), Expect = 3e-76
Identities = 56/160 (35%), Positives = 87/160 (54%), Gaps = 5/160 (3%)
Query: 19 ALNERILSSMSHRSVAAHP--WHDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIK 75
+ + ++ ++ + IG P N ++E+ GG+ +KYE+DK +G +
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALI 62
Query: 76 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 135
VDR LY+ + YP NYGF+P T+ ED DP+DVLV P++PG + R IG++ M D
Sbjct: 63 VDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSG 122
Query: 136 KDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFED 173
KD+KIIAV + + D ++P L +I FFE
Sbjct: 123 KDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEH 162
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism,
hydrolase; HET: MSE; 2.00A {Coxiella burnetii}
Length = 178
Score = 213 bits (544), Expect = 3e-71
Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 35 AHPWHDLEIGPGAPAVCNCVVEI-GKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFI 93
++ L N ++EI GG+VKYE DK G + VDR + +S+ YP NYGF+
Sbjct: 1 SYVMTFLVSAGKGIDDFNVIIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRYPCNYGFV 60
Query: 94 PRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDP--EFR 151
P T+ +D DP+DVLVL PV PG +R RA+G+M M D+ +D K++AV +
Sbjct: 61 PSTLAQDGDPLDVLVLTPVPVQPGVLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYE 120
Query: 152 HYKDIKELPPHRLAEIRRFFED 173
+ +K++ L I FFE
Sbjct: 121 AIQSLKDISSLLLDAISHFFER 142
>3d53_A Inorganic pyrophosphatase; seattle structural G center for
infectious disease, ssgcid, hydrolase, magnesium
binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Length = 173
Score = 212 bits (543), Expect = 5e-71
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 39 HDLEIGPGAPAVCNCVVEIGKGG-KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTI 97
++ N ++EI +KYE DK SG + VDR + +++ YP NYGFIP T+
Sbjct: 5 KKIKAKA-NNNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTL 63
Query: 98 CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKD 155
D DP+DVLV+ PV+PGS ++CRAIG++ M D+ D+KIIAV D F H K+
Sbjct: 64 SNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKE 123
Query: 156 IKELPPHRLAEIRRFFED 173
+ +L I FFE
Sbjct: 124 LDDLCEMLKKRIVHFFEH 141
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Length = 286
Score = 188 bits (478), Expect = 1e-59
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 29/186 (15%)
Query: 15 GPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPA-VCNCVVEIGKGGKVKYELDK---- 69
G L ++ + V +HD+ + + N VVEI + K E+ K
Sbjct: 8 GAKNTLEYKVYIEKDGKPV--SAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETL 65
Query: 70 -------ASGLIKVDRVLYSSVVYPHNYGFIPRT------------ICEDSDPMDVLVLM 110
G ++ R + Y HNYG P+T D+DP+DVL +
Sbjct: 66 NPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIG 125
Query: 111 QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIK---ELPPHRLAEI 167
+ G + +A+G+M ++D+GE D K+IA+ +DP DI+ + P L
Sbjct: 126 ETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT 185
Query: 168 RRFFED 173
+F
Sbjct: 186 NEWFRI 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.081
Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 68/142 (47%)
Query: 120 LRCRAIGLMPMIDQGEKDDKIIAVCA----DDPE----FRHY----------KDIKELPP 161
L + P +++ A D ++H + L P
Sbjct: 318 LPREVLTTNPRR---------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 162 HRLAEIRRFFEDC--------IHSFVFIIL-----------------SYSLID------- 189
AE R+ F+ I + + ++ YSL++
Sbjct: 369 ---AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 190 ------YLSQHSAVSTTPNMHK 205
YL + +H+
Sbjct: 426 ISIPSIYLELKVKLENEYALHR 447
Score = 32.1 bits (72), Expect = 0.12
Identities = 26/201 (12%), Positives = 56/201 (27%), Gaps = 68/201 (33%)
Query: 22 ERILSSMSHRSVAAHPW-------HDLEI-----GPGAPAVCNCVVEIGKGGKVKYELDK 69
+++ + S+ + + A+ +V+ Y + K
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-------HYNIPK 457
Query: 70 AS-----GLIKVDRVLYSSVVYPH------------------NYGFIPRTICEDSDPMDV 106
+D+ YS + + H ++ F+ + I DS
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA--- 513
Query: 107 LVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEF-RHYKDIKE-LPPHRL 164
+ ++ + Q + I C +DP++ R I + LP
Sbjct: 514 --------------WNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEE 557
Query: 165 AEIRRFFEDCIHSFVFIILSY 185
I + D + I L
Sbjct: 558 NLICSKYTDLLR----IALMA 574
Score = 29.8 bits (66), Expect = 0.78
Identities = 20/156 (12%), Positives = 47/156 (30%), Gaps = 36/156 (23%)
Query: 62 KVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVL--VLMQ-EP----V 114
+K E + ++ + +Y N F + P L L++ P +
Sbjct: 97 PIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVL 154
Query: 115 LPG------SFL---RCRAIGLMPMIDQG---------EKDDKIIA----VCAD-DPEFR 151
+ G +++ C + + +D + ++ + DP +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 152 HYKDIKELPPHRLAEI----RRFFEDCIHSFVFIIL 183
D R+ I RR + + ++L
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.37
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 54/129 (41%)
Query: 102 DPMDVLVLMQEPV----LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIK 157
+P + EP L G FL G ++ + + + +
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFL-----GY-------------VSSLVEPSKVGQFDQV- 83
Query: 158 ELPPHRLAEIRRFFEDC------IHSFVF---------------IILSYSLIDYLSQHSA 196
L FE+C IH+ +I +Y ++ A
Sbjct: 84 ------LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY----ITARIMA 133
Query: 197 VSTTPNMHK 205
Sbjct: 134 KRPFDKKSN 142
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
protein ST initiative; 2.50A {Enterococcus faecium}
Length = 587
Score = 26.6 bits (59), Expect = 7.7
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 137 DDKIIAVCADDPEFRHYK----DIKELPPHRLAE 166
DD+I ++P+ Y+ I + H L+
Sbjct: 100 DDQIWQYFKEEPKLEVYRHYIQQIVDNRAHVLSA 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.432
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,415,814
Number of extensions: 206343
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 21
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)