RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028169
         (212 letters)



>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 173

 Score =  167 bits (425), Expect = 9e-54
 Identities = 72/138 (52%), Positives = 96/138 (69%)

Query: 36  HPWHDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPR 95
           +P+HDLE GP  P V   ++EI KG + KYELDK +GL+K+DRVLYS   YP +YG IPR
Sbjct: 1   NPFHDLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPR 60

Query: 96  TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 155
           T  ED DP D++V+M+EPV P + +  R IGL  MID G+KD K++AV  +DP F+ +KD
Sbjct: 61  TWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKD 120

Query: 156 IKELPPHRLAEIRRFFED 173
           I ++P   L EI  FF+ 
Sbjct: 121 IDDVPKAFLDEIAHFFKR 138


>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
           thermophilus [TaxId: 274]}
          Length = 174

 Score =  158 bits (401), Expect = 5e-50
 Identities = 59/135 (43%), Positives = 80/135 (59%)

Query: 39  HDLEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTIC 98
             L +G  AP V + V+E+ +G   KYE D   G IK+DRVL  +  YP +YGFIP T+ 
Sbjct: 4   KSLPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLA 63

Query: 99  EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKE 158
           ED DP+D LVL   P+LPG  +  R +GL+ M D+   D K+I V A+D    H +DI +
Sbjct: 64  EDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGD 123

Query: 159 LPPHRLAEIRRFFED 173
           +P     EI+ FFE 
Sbjct: 124 VPEGVKQEIQHFFET 138


>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
           [TaxId: 562]}
          Length = 175

 Score =  150 bits (381), Expect = 5e-47
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 39  HDLEIGPGAPAVCNCVVEIGKGGK-VKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTI 97
            ++  G   P     V+EI      +KYE+DK SG + VDR + +++ YP NYG+I  T+
Sbjct: 3   LNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDRFMSTAMFYPCNYGYINHTL 62

Query: 98  CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD--PEFRHYKD 155
             D DP+DVLV    P+ PGS  RCR +G++ M D+  +D K++AV       E+ H KD
Sbjct: 63  SLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKD 122

Query: 156 IKELPPHRLAEIRRFFED 173
           + +LP    A+I  FFE 
Sbjct: 123 VNDLPELLKAQIAHFFEH 140


>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 284

 Score =  152 bits (384), Expect = 4e-46
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 29/186 (15%)

Query: 15  GPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPA-VCNCVVEIGKGGKVKYELDK---- 69
           G    L  ++      + V    +HD+ +       + N VVEI +    K E+ K    
Sbjct: 8   GAKNTLEYKVYIEKDGKPV--SAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETL 65

Query: 70  -------ASGLIKVDRVLYSSVVYPHNYGFIPRT------------ICEDSDPMDVLVLM 110
                    G ++  R  +    Y HNYG  P+T               D+DP+DVL + 
Sbjct: 66  NPIIQDTKKGKLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIG 125

Query: 111 QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKEL---PPHRLAEI 167
           +     G   + +A+G+M ++D+GE D K+IA+  +DP      DI+++    P  L   
Sbjct: 126 ETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRAT 185

Query: 168 RRFFED 173
             +F  
Sbjct: 186 NEWFRI 191


>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon
           Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 170

 Score =  146 bits (370), Expect = 2e-45
 Identities = 66/136 (48%), Positives = 85/136 (62%), Gaps = 2/136 (1%)

Query: 41  LEIGPGAPAVCNCVVEIGKGGKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICED 100
           L  G  AP V N +VEI +G  +KYE D   G+IKVDRVLY+S+ YP NYGFIP T+ ED
Sbjct: 2   LSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEED 61

Query: 101 SDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCA--DDPEFRHYKDIKE 158
            DP+DVLV+    + PGS +  R IG++ M D+  +D KI+AV     DP F + KDI +
Sbjct: 62  GDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDIND 121

Query: 159 LPPHRLAEIRRFFEDC 174
           LP     +I  FFE  
Sbjct: 122 LPQATKNKIVHFFEHY 137


>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
           polymerases {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 410

 Score = 25.5 bits (55), Expect = 5.4
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 136 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVFIILSYSLIDY 190
           K+ + I    D+   + Y  +  L P ++ +I +   D     +  +       +
Sbjct: 33  KETQKIYALYDNTGHKPYFLVD-LEPDKVGKIPKIVRDPSFDHIETVSKIDPYTW 86


>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 154

 Score = 24.3 bits (52), Expect = 8.9
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 145 ADDPEFRHYKDIKELPPHRLAEIRRFFEDCIHSFVF 180
              P  + +KD  +     +  I   F      +V+
Sbjct: 99  PPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVW 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 843,736
Number of extensions: 39808
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 8
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)