Query 028170
Match_columns 212
No_of_seqs 122 out of 1251
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:20:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01262 maiA maleylacetoacet 100.0 5.7E-40 1.2E-44 242.9 22.2 207 3-210 1-210 (210)
2 PRK09481 sspA stringent starva 100.0 2.1E-40 4.5E-45 245.1 19.0 197 1-210 10-208 (211)
3 KOG0868 Glutathione S-transfer 100.0 1.2E-39 2.7E-44 221.9 17.7 208 2-211 6-214 (217)
4 PRK13972 GSH-dependent disulfi 100.0 3.6E-39 7.9E-44 239.2 17.2 200 1-206 1-207 (215)
5 PLN02473 glutathione S-transfe 100.0 2.8E-38 6.2E-43 234.4 20.5 201 2-204 3-211 (214)
6 PRK15113 glutathione S-transfe 100.0 9.8E-39 2.1E-43 236.6 17.8 199 1-205 5-209 (214)
7 PRK10542 glutathionine S-trans 100.0 6.8E-37 1.5E-41 225.0 17.3 196 2-206 1-199 (201)
8 PLN02395 glutathione S-transfe 100.0 7.1E-36 1.5E-40 221.8 20.6 201 2-205 3-211 (215)
9 COG0625 Gst Glutathione S-tran 100.0 1.4E-35 3.1E-40 219.4 21.0 194 2-199 1-199 (211)
10 PRK10357 putative glutathione 100.0 1.3E-35 2.9E-40 218.2 20.3 198 2-205 1-201 (202)
11 PRK11752 putative S-transferas 100.0 1.7E-35 3.6E-40 225.1 21.0 201 1-207 44-261 (264)
12 PTZ00057 glutathione s-transfe 100.0 3.6E-35 7.8E-40 216.1 19.2 197 1-208 4-203 (205)
13 KOG0406 Glutathione S-transfer 100.0 2.2E-33 4.7E-38 203.2 19.6 194 2-205 10-212 (231)
14 KOG1695 Glutathione S-transfer 100.0 5E-33 1.1E-37 200.1 17.6 199 2-208 4-204 (206)
15 KOG0867 Glutathione S-transfer 100.0 1.6E-32 3.5E-37 203.9 17.7 200 2-203 3-208 (226)
16 PLN02378 glutathione S-transfe 100.0 4.9E-32 1.1E-36 200.5 17.6 180 6-205 16-200 (213)
17 TIGR00862 O-ClC intracellular 100.0 5E-31 1.1E-35 195.5 19.7 180 8-205 17-221 (236)
18 PRK10387 glutaredoxin 2; Provi 100.0 2.3E-31 5E-36 196.8 14.2 185 2-198 1-207 (210)
19 PLN02817 glutathione dehydroge 100.0 2.5E-30 5.5E-35 195.8 18.9 177 7-204 70-251 (265)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 2.2E-28 4.8E-33 180.4 14.5 183 3-198 1-206 (209)
21 KOG4420 Uncharacterized conser 99.9 1E-25 2.2E-30 162.7 14.4 202 2-204 27-287 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 7.1E-24 1.5E-28 178.7 17.7 161 2-204 3-172 (722)
23 KOG1422 Intracellular Cl- chan 99.8 5.7E-20 1.2E-24 129.4 14.3 183 7-205 18-206 (221)
24 cd03048 GST_N_Ure2p_like GST_N 99.8 3E-20 6.5E-25 116.6 8.8 77 1-78 1-80 (81)
25 cd03052 GST_N_GDAP1 GST_N fami 99.8 2.6E-20 5.6E-25 114.1 7.8 73 2-74 1-73 (73)
26 cd03045 GST_N_Delta_Epsilon GS 99.8 8.4E-20 1.8E-24 112.6 7.9 74 2-75 1-74 (74)
27 cd03050 GST_N_Theta GST_N fami 99.8 1.3E-19 2.9E-24 112.2 8.5 76 2-77 1-76 (76)
28 cd03041 GST_N_2GST_N GST_N fam 99.8 7.2E-20 1.6E-24 113.6 7.2 75 1-77 1-77 (77)
29 PF13417 GST_N_3: Glutathione 99.8 1.9E-19 4.1E-24 111.1 7.9 73 4-79 1-73 (75)
30 cd03053 GST_N_Phi GST_N family 99.8 2.4E-19 5.3E-24 111.1 8.1 75 2-76 2-76 (76)
31 cd03056 GST_N_4 GST_N family, 99.8 6.1E-19 1.3E-23 108.4 7.7 73 2-74 1-73 (73)
32 cd03047 GST_N_2 GST_N family, 99.8 6.5E-19 1.4E-23 108.2 7.7 73 2-74 1-73 (73)
33 cd03059 GST_N_SspA GST_N famil 99.8 1E-18 2.2E-23 107.5 8.1 73 2-77 1-73 (73)
34 cd03058 GST_N_Tau GST_N family 99.8 1.1E-18 2.4E-23 107.5 8.1 73 2-77 1-74 (74)
35 cd03046 GST_N_GTT1_like GST_N 99.8 1.4E-18 3E-23 107.7 8.5 76 2-78 1-76 (76)
36 cd03057 GST_N_Beta GST_N famil 99.8 1.6E-18 3.4E-23 107.7 8.5 76 2-78 1-77 (77)
37 PF02798 GST_N: Glutathione S- 99.8 1.5E-18 3.3E-23 107.2 8.2 74 2-75 1-76 (76)
38 cd03051 GST_N_GTT2_like GST_N 99.8 1.2E-18 2.5E-23 107.4 7.4 73 2-74 1-74 (74)
39 cd03076 GST_N_Pi GST_N family, 99.8 7.9E-19 1.7E-23 107.7 6.4 72 2-76 2-73 (73)
40 cd03042 GST_N_Zeta GST_N famil 99.8 1.8E-18 4E-23 106.3 7.8 73 2-74 1-73 (73)
41 cd03044 GST_N_EF1Bgamma GST_N 99.8 2.1E-18 4.5E-23 106.5 7.8 73 2-75 1-74 (75)
42 cd03191 GST_C_Zeta GST_C famil 99.8 1.6E-17 3.5E-22 112.2 12.1 117 88-205 2-120 (121)
43 cd03061 GST_N_CLIC GST_N famil 99.8 5.1E-18 1.1E-22 106.9 8.3 69 8-79 20-88 (91)
44 cd03039 GST_N_Sigma_like GST_N 99.8 2.2E-18 4.7E-23 105.6 6.2 72 2-75 1-72 (72)
45 cd03075 GST_N_Mu GST_N family, 99.7 6.5E-18 1.4E-22 105.8 7.6 75 3-77 2-82 (82)
46 cd03080 GST_N_Metaxin_like GST 99.7 6.7E-18 1.5E-22 104.2 7.5 68 1-78 1-75 (75)
47 COG2999 GrxB Glutaredoxin 2 [P 99.7 4.5E-17 9.7E-22 111.7 11.2 186 2-199 1-208 (215)
48 KOG4244 Failed axon connection 99.7 1.4E-16 3E-21 116.3 13.6 171 9-194 60-272 (281)
49 cd03060 GST_N_Omega_like GST_N 99.7 1.9E-17 4.1E-22 101.1 7.5 68 3-73 2-70 (71)
50 cd03055 GST_N_Omega GST_N fami 99.7 1.6E-17 3.6E-22 105.8 7.4 71 1-74 18-89 (89)
51 cd03037 GST_N_GRX2 GST_N famil 99.7 1.9E-17 4.1E-22 101.1 6.7 70 2-75 1-71 (71)
52 cd03077 GST_N_Alpha GST_N fami 99.7 3.3E-17 7.1E-22 102.0 7.7 71 2-78 2-77 (79)
53 cd03038 GST_N_etherase_LigE GS 99.7 3.8E-17 8.3E-22 103.1 7.7 70 8-78 14-84 (84)
54 cd03049 GST_N_3 GST_N family, 99.7 3.2E-17 6.9E-22 100.7 6.9 70 2-74 1-73 (73)
55 cd03188 GST_C_Beta GST_C famil 99.7 7.2E-17 1.6E-21 107.8 8.8 111 89-202 2-114 (114)
56 KOG3029 Glutathione S-transfer 99.7 2.6E-16 5.7E-21 115.6 12.1 187 2-195 91-355 (370)
57 cd03196 GST_C_5 GST_C family, 99.7 1.7E-16 3.8E-21 106.0 9.9 110 86-202 3-115 (115)
58 cd03189 GST_C_GTT1_like GST_C 99.7 5.4E-16 1.2E-20 104.4 11.4 110 84-196 2-119 (119)
59 cd03178 GST_C_Ure2p_like GST_C 99.7 2.5E-16 5.5E-21 105.0 9.6 110 89-202 1-112 (113)
60 cd03208 GST_C_Alpha GST_C fami 99.7 3.5E-16 7.5E-21 107.7 10.4 117 89-208 3-119 (137)
61 cd03186 GST_C_SspA GST_N famil 99.7 7.4E-16 1.6E-20 101.8 10.9 104 88-201 2-106 (107)
62 PF13409 GST_N_2: Glutathione 99.7 1.5E-16 3.3E-21 96.6 6.9 68 9-76 1-70 (70)
63 cd03040 GST_N_mPGES2 GST_N fam 99.7 1.8E-16 4E-21 98.3 7.3 71 2-77 2-76 (77)
64 COG0435 ECM4 Predicted glutath 99.7 8.9E-16 1.9E-20 112.6 11.6 192 2-203 52-285 (324)
65 cd03177 GST_C_Delta_Epsilon GS 99.7 4.7E-16 1E-20 104.5 8.8 111 89-205 2-113 (118)
66 cd03180 GST_C_2 GST_C family, 99.7 2.1E-15 4.6E-20 100.0 11.5 107 89-198 2-110 (110)
67 cd03210 GST_C_Pi GST_C family, 99.7 1.4E-15 3E-20 103.4 10.3 112 89-207 3-115 (126)
68 cd03187 GST_C_Phi GST_C family 99.7 1.4E-15 3.1E-20 102.2 10.2 111 89-202 2-118 (118)
69 cd03043 GST_N_1 GST_N family, 99.7 5E-16 1.1E-20 95.2 7.3 68 6-74 6-73 (73)
70 cd03209 GST_C_Mu GST_C family, 99.7 1.7E-15 3.7E-20 102.2 10.3 110 89-207 2-112 (121)
71 cd03181 GST_C_EFB1gamma GST_C 99.6 2.1E-15 4.6E-20 102.1 10.5 115 89-206 1-118 (123)
72 cd03184 GST_C_Omega GST_C fami 99.6 1.4E-15 3.1E-20 103.1 9.6 107 89-205 2-114 (124)
73 cd03182 GST_C_GTT2_like GST_C 99.6 3.1E-15 6.7E-20 100.4 10.8 110 86-198 1-117 (117)
74 cd03185 GST_C_Tau GST_C family 99.6 3.1E-15 6.7E-20 101.7 10.6 109 88-205 2-116 (126)
75 cd00570 GST_N_family Glutathio 99.6 1.2E-15 2.7E-20 92.6 7.5 71 2-74 1-71 (71)
76 cd03190 GST_C_ECM4_like GST_C 99.6 4.1E-15 8.8E-20 103.1 10.4 109 88-204 3-118 (142)
77 cd03183 GST_C_Theta GST_C fami 99.6 1.5E-14 3.2E-19 98.4 10.3 111 90-202 2-120 (126)
78 cd03054 GST_N_Metaxin GST_N fa 99.6 8.7E-15 1.9E-19 89.5 6.9 65 2-76 1-72 (72)
79 cd03200 GST_C_JTV1 GST_C famil 99.6 2.2E-14 4.7E-19 92.5 8.4 96 70-195 1-96 (96)
80 cd03198 GST_C_CLIC GST_C famil 99.6 2.4E-14 5.3E-19 97.0 8.7 83 122-205 23-125 (134)
81 cd03195 GST_C_4 GST_C family, 99.6 2.1E-14 4.6E-19 95.8 8.4 112 87-204 1-113 (114)
82 cd03207 GST_C_8 GST_C family, 99.6 1.2E-14 2.6E-19 95.3 6.6 76 125-204 27-102 (103)
83 KOG2903 Predicted glutathione 99.5 4.1E-14 8.8E-19 103.1 9.3 194 2-203 38-287 (319)
84 cd03203 GST_C_Lambda GST_C fam 99.5 1.3E-13 2.8E-18 92.8 10.8 106 86-205 1-112 (120)
85 PF00043 GST_C: Glutathione S- 99.5 6.5E-14 1.4E-18 90.3 9.0 72 122-196 22-95 (95)
86 cd03206 GST_C_7 GST_C family, 99.5 4.6E-14 9.9E-19 92.0 8.3 99 94-198 2-100 (100)
87 KOG3027 Mitochondrial outer me 99.5 1.6E-12 3.5E-17 91.7 14.7 174 9-195 33-248 (257)
88 cd03194 GST_C_3 GST_C family, 99.5 1.4E-13 3E-18 91.8 8.0 75 125-203 38-113 (114)
89 cd03179 GST_C_1 GST_C family, 99.5 9.5E-14 2.1E-18 91.2 6.8 102 89-193 2-105 (105)
90 cd03204 GST_C_GDAP1 GST_C fami 99.5 3.1E-13 6.8E-18 88.8 8.5 76 122-198 23-111 (111)
91 PF14497 GST_C_3: Glutathione 99.4 3.3E-13 7.2E-18 87.8 5.9 70 122-194 29-99 (99)
92 cd03201 GST_C_DHAR GST_C famil 99.4 2.2E-12 4.8E-17 86.8 9.9 78 127-205 29-111 (121)
93 PF13410 GST_C_2: Glutathione 99.4 2.1E-12 4.6E-17 78.2 8.1 65 124-191 2-69 (69)
94 cd03192 GST_C_Sigma_like GST_C 99.4 3.3E-12 7.2E-17 83.8 8.5 101 89-192 2-104 (104)
95 cd03079 GST_N_Metaxin2 GST_N f 99.4 3.3E-12 7.2E-17 77.3 6.6 60 8-76 15-74 (74)
96 cd00299 GST_C_family Glutathio 99.3 4.5E-12 9.8E-17 82.2 6.9 96 94-192 2-100 (100)
97 cd03202 GST_C_etherase_LigE GS 99.3 2.4E-11 5.3E-16 82.2 7.8 67 126-195 56-124 (124)
98 KOG3028 Translocase of outer m 99.2 1.9E-09 4.2E-14 81.2 17.5 172 10-194 17-233 (313)
99 cd03205 GST_C_6 GST_C family, 99.2 2E-10 4.4E-15 74.4 8.2 92 96-192 4-98 (98)
100 cd03193 GST_C_Metaxin GST_C fa 99.2 1.7E-10 3.7E-15 73.2 7.7 63 128-193 19-88 (88)
101 PF14834 GST_C_4: Glutathione 99.2 4.6E-10 9.9E-15 72.4 9.5 113 86-203 1-113 (117)
102 TIGR02190 GlrX-dom Glutaredoxi 99.1 2.5E-10 5.5E-15 70.9 6.0 71 1-74 9-79 (79)
103 cd03078 GST_N_Metaxin1_like GS 99.0 1.1E-09 2.4E-14 66.7 6.6 57 10-76 16-72 (73)
104 PRK10638 glutaredoxin 3; Provi 99.0 9.6E-10 2.1E-14 68.9 6.0 71 2-74 4-74 (83)
105 cd03211 GST_C_Metaxin2 GST_C f 99.0 1.4E-09 2.9E-14 73.7 6.9 68 124-193 53-126 (126)
106 cd03197 GST_C_mPGES2 GST_C fam 99.0 2.9E-09 6.2E-14 73.0 7.4 62 131-194 82-145 (149)
107 cd03029 GRX_hybridPRX5 Glutare 99.0 2.7E-09 5.9E-14 65.0 6.5 71 1-74 2-72 (72)
108 cd03212 GST_C_Metaxin1_3 GST_C 99.0 2.5E-09 5.5E-14 73.4 7.1 69 124-194 60-134 (137)
109 TIGR02196 GlrX_YruB Glutaredox 98.9 6.3E-09 1.4E-13 63.4 5.9 71 1-73 1-73 (74)
110 cd03027 GRX_DEP Glutaredoxin ( 98.8 1.4E-08 3E-13 62.0 5.5 68 2-71 3-70 (73)
111 cd02066 GRX_family Glutaredoxi 98.7 7.9E-08 1.7E-12 58.1 5.6 69 2-72 2-70 (72)
112 PRK10329 glutaredoxin-like pro 98.6 7.5E-08 1.6E-12 59.8 5.1 61 1-64 2-62 (81)
113 COG0695 GrxC Glutaredoxin and 98.6 1.3E-07 2.7E-12 58.7 5.6 73 1-73 2-74 (80)
114 cd02976 NrdH NrdH-redoxin (Nrd 98.6 8.6E-08 1.9E-12 58.2 4.7 62 2-65 2-63 (73)
115 cd03418 GRX_GRXb_1_3_like Glut 98.5 3.1E-07 6.8E-12 56.2 5.6 71 2-74 2-73 (75)
116 TIGR02200 GlrX_actino Glutared 98.5 2.7E-07 5.8E-12 56.7 4.3 70 2-73 2-75 (77)
117 TIGR02181 GRX_bact Glutaredoxi 98.5 5.3E-07 1.1E-11 55.8 5.5 72 2-75 1-72 (79)
118 PRK11200 grxA glutaredoxin 1; 98.4 1.1E-06 2.3E-11 55.3 6.4 75 2-78 3-84 (85)
119 TIGR02194 GlrX_NrdH Glutaredox 98.4 8.1E-07 1.8E-11 53.9 4.7 57 2-61 1-57 (72)
120 TIGR02183 GRXA Glutaredoxin, G 98.3 2.6E-06 5.7E-11 53.6 6.7 75 2-78 2-83 (86)
121 PF00462 Glutaredoxin: Glutare 98.3 4.7E-07 1E-11 52.9 3.0 60 2-63 1-60 (60)
122 cd03419 GRX_GRXh_1_2_like Glut 98.3 2.7E-06 5.9E-11 52.9 6.0 74 2-75 2-76 (82)
123 TIGR02189 GlrX-like_plant Glut 98.2 4.5E-06 9.8E-11 53.9 5.5 71 2-72 10-81 (99)
124 PHA03050 glutaredoxin; Provisi 98.1 9.8E-06 2.1E-10 53.2 5.7 70 2-71 15-88 (108)
125 PF10568 Tom37: Outer mitochon 98.1 2E-05 4.4E-10 47.5 6.4 55 9-73 13-71 (72)
126 TIGR02180 GRX_euk Glutaredoxin 98.0 1.7E-05 3.6E-10 49.5 5.8 74 2-75 1-77 (84)
127 TIGR00365 monothiol glutaredox 97.9 3.5E-05 7.6E-10 49.6 5.8 64 8-73 25-88 (97)
128 PF04399 Glutaredoxin2_C: Glut 97.9 7.4E-05 1.6E-09 50.5 7.1 68 126-198 57-124 (132)
129 cd03199 GST_C_GRX2 GST_C famil 97.8 5.8E-05 1.3E-09 50.6 5.8 67 127-198 59-125 (128)
130 cd03028 GRX_PICOT_like Glutare 97.8 7.4E-05 1.6E-09 47.4 5.9 64 8-73 21-84 (90)
131 KOG1147 Glutamyl-tRNA syntheta 97.4 7.2E-05 1.6E-09 61.0 1.9 106 58-191 43-151 (712)
132 cd03031 GRX_GRX_like Glutaredo 97.3 0.00071 1.5E-08 46.8 5.7 69 2-72 2-80 (147)
133 cd03032 ArsC_Spx Arsenate Redu 97.3 0.00029 6.4E-09 46.8 3.7 33 1-33 1-33 (115)
134 PRK01655 spxA transcriptional 97.3 0.00031 6.7E-09 47.8 3.6 33 1-33 1-33 (131)
135 PRK12759 bifunctional gluaredo 97.2 0.00077 1.7E-08 54.9 6.0 67 2-71 4-79 (410)
136 cd02973 TRX_GRX_like Thioredox 97.2 0.0015 3.2E-08 38.7 5.4 57 2-64 3-64 (67)
137 PRK10824 glutaredoxin-4; Provi 97.2 0.0015 3.2E-08 43.2 5.7 64 8-73 28-91 (115)
138 PRK13344 spxA transcriptional 97.1 0.00057 1.2E-08 46.5 3.7 33 1-33 1-33 (132)
139 PRK12559 transcriptional regul 97.1 0.00077 1.7E-08 45.9 4.0 33 1-33 1-33 (131)
140 COG1393 ArsC Arsenate reductas 96.9 0.0012 2.6E-08 43.9 3.6 33 1-33 2-34 (117)
141 PRK10853 putative reductase; P 96.9 0.0015 3.2E-08 43.6 3.6 33 1-33 1-33 (118)
142 cd03036 ArsC_like Arsenate Red 96.8 0.0015 3.2E-08 43.1 3.2 32 2-33 1-32 (111)
143 KOG1752 Glutaredoxin and relat 96.7 0.0077 1.7E-07 39.1 5.9 72 3-74 17-89 (104)
144 cd02977 ArsC_family Arsenate R 96.7 0.0023 5.1E-08 41.7 3.5 32 2-33 1-32 (105)
145 cd03030 GRX_SH3BGR Glutaredoxi 96.5 0.01 2.2E-07 37.7 5.6 68 2-71 2-79 (92)
146 PTZ00062 glutaredoxin; Provisi 96.5 0.0077 1.7E-07 44.2 5.4 63 8-72 126-188 (204)
147 TIGR01617 arsC_related transcr 96.3 0.0051 1.1E-07 41.0 3.4 32 2-33 1-32 (117)
148 PRK10026 arsenate reductase; P 96.3 0.0056 1.2E-07 42.0 3.4 33 1-33 3-35 (141)
149 cd03035 ArsC_Yffb Arsenate Red 96.1 0.008 1.7E-07 39.2 3.5 32 2-33 1-32 (105)
150 cd03033 ArsC_15kD Arsenate Red 96.1 0.0079 1.7E-07 39.8 3.4 32 2-33 2-33 (113)
151 PHA02125 thioredoxin-like prot 95.7 0.037 8E-07 33.6 5.1 52 1-58 1-52 (75)
152 COG4545 Glutaredoxin-related p 95.3 0.058 1.3E-06 32.3 4.6 64 1-64 3-77 (85)
153 TIGR01616 nitro_assoc nitrogen 95.3 0.025 5.5E-07 38.1 3.5 32 2-33 3-34 (126)
154 TIGR00014 arsC arsenate reduct 95.1 0.032 6.8E-07 37.0 3.4 32 2-33 1-32 (114)
155 cd03034 ArsC_ArsC Arsenate Red 95.0 0.032 6.9E-07 36.8 3.4 32 2-33 1-32 (112)
156 cd03026 AhpF_NTD_C TRX-GRX-lik 95.0 0.094 2E-06 33.0 5.4 57 2-64 16-77 (89)
157 PF05768 DUF836: Glutaredoxin- 95.0 0.14 3E-06 31.6 6.0 54 2-60 2-57 (81)
158 COG0278 Glutaredoxin-related p 94.8 0.13 2.7E-06 32.8 5.3 67 7-74 27-93 (105)
159 TIGR00411 redox_disulf_1 small 94.7 0.16 3.4E-06 31.0 5.8 57 1-61 2-62 (82)
160 TIGR00412 redox_disulf_2 small 94.6 0.24 5.2E-06 30.0 6.2 54 2-63 3-60 (76)
161 PF11801 Tom37_C: Tom37 C-term 93.5 0.4 8.6E-06 34.1 6.5 38 132-171 112-153 (168)
162 PF11287 DUF3088: Protein of u 93.5 0.24 5.2E-06 32.3 4.8 67 9-78 23-108 (112)
163 cd01659 TRX_superfamily Thiore 91.4 0.67 1.5E-05 25.7 4.7 53 2-57 1-58 (69)
164 PF13192 Thioredoxin_3: Thiore 91.2 1.1 2.4E-05 27.1 5.6 56 2-65 3-62 (76)
165 PF04908 SH3BGR: SH3-binding, 90.2 0.72 1.6E-05 29.6 4.2 68 2-71 3-85 (99)
166 PF09635 MetRS-N: MetRS-N bind 89.5 1.8 3.9E-05 28.8 5.7 27 52-78 35-63 (122)
167 PF03960 ArsC: ArsC family; I 88.0 0.55 1.2E-05 30.8 2.6 29 5-33 1-29 (110)
168 cd02947 TRX_family TRX family; 83.1 7 0.00015 23.5 6.0 54 2-61 14-74 (93)
169 cd02949 TRX_NTR TRX domain, no 82.8 5.4 0.00012 25.1 5.4 58 2-63 17-80 (97)
170 cd02989 Phd_like_TxnDC9 Phosdu 82.0 6.7 0.00014 25.7 5.7 58 3-64 27-89 (113)
171 cd02953 DsbDgamma DsbD gamma f 81.5 3 6.5E-05 26.6 3.9 55 2-57 15-77 (104)
172 KOG0911 Glutaredoxin-related p 81.3 3.5 7.6E-05 30.6 4.4 66 7-74 151-216 (227)
173 TIGR03143 AhpF_homolog putativ 78.9 6 0.00013 34.0 5.8 56 2-63 480-540 (555)
174 cd02975 PfPDO_like_N Pyrococcu 76.8 8.8 0.00019 25.1 5.0 49 5-57 29-80 (113)
175 PRK15317 alkyl hydroperoxide r 75.4 3.6 7.9E-05 34.9 3.6 70 2-75 120-196 (517)
176 TIGR03140 AhpF alkyl hydropero 74.0 3.3 7.2E-05 35.1 3.0 71 2-76 121-198 (515)
177 KOG1668 Elongation factor 1 be 72.9 4.1 8.8E-05 30.4 2.8 60 134-200 10-69 (231)
178 PF00085 Thioredoxin: Thioredo 72.1 21 0.00045 22.2 7.9 70 2-75 21-102 (103)
179 TIGR02187 GlrX_arch Glutaredox 68.6 26 0.00056 25.9 6.4 52 2-57 137-191 (215)
180 TIGR01295 PedC_BrcD bacterioci 68.1 33 0.00071 22.8 6.3 21 2-22 27-47 (122)
181 PTZ00051 thioredoxin; Provisio 66.4 25 0.00054 21.8 5.3 58 2-63 22-84 (98)
182 TIGR02681 phage_pRha phage reg 65.5 7.3 0.00016 25.5 2.6 26 53-78 2-28 (108)
183 PF04134 DUF393: Protein of un 64.7 20 0.00044 23.2 4.7 72 4-76 1-77 (114)
184 cd02984 TRX_PICOT TRX domain, 62.7 25 0.00054 21.7 4.8 58 2-63 18-81 (97)
185 PHA02278 thioredoxin-like prot 59.4 45 0.00097 21.4 6.2 60 4-63 20-85 (103)
186 cd02963 TRX_DnaJ TRX domain, D 55.4 54 0.0012 21.1 5.6 57 2-62 28-91 (111)
187 cd02956 ybbN ybbN protein fami 53.4 25 0.00055 21.7 3.6 56 3-62 17-78 (96)
188 cd02997 PDI_a_PDIR PDIa family 50.7 31 0.00067 21.5 3.7 58 2-61 21-86 (104)
189 KOG2501 Thioredoxin, nucleored 49.4 36 0.00077 24.0 3.9 35 3-37 37-79 (157)
190 cd02951 SoxW SoxW family; SoxW 47.5 64 0.0014 21.2 5.0 16 2-17 18-33 (125)
191 PHA03075 glutaredoxin-like pro 47.3 34 0.00074 22.7 3.3 66 2-77 5-70 (123)
192 COG3019 Predicted metal-bindin 46.6 36 0.00077 23.4 3.5 70 2-77 28-104 (149)
193 PRK10996 thioredoxin 2; Provis 42.4 44 0.00095 22.7 3.6 58 2-63 56-119 (139)
194 cd02957 Phd_like Phosducin (Ph 42.3 48 0.001 21.4 3.7 59 3-66 29-92 (113)
195 PRK09381 trxA thioredoxin; Pro 42.2 88 0.0019 19.8 5.9 57 3-63 26-88 (109)
196 cd02962 TMX2 TMX2 family; comp 42.0 1.2E+02 0.0026 21.2 6.0 58 3-64 52-122 (152)
197 TIGR02187 GlrX_arch Glutaredox 41.3 61 0.0013 23.9 4.5 59 2-62 23-89 (215)
198 cd02954 DIM1 Dim1 family; Dim1 40.1 57 0.0012 21.6 3.7 57 4-64 20-82 (114)
199 cd02952 TRP14_like Human TRX-r 39.2 1.2E+02 0.0025 20.3 5.9 58 8-65 38-105 (119)
200 cd02948 TRX_NDPK TRX domain, T 38.7 39 0.00084 21.4 2.7 56 3-63 22-84 (102)
201 cd04911 ACT_AKiii-YclM-BS_1 AC 38.5 38 0.00083 20.6 2.5 25 9-33 14-38 (76)
202 COG3646 Uncharacterized phage- 38.5 44 0.00095 23.8 3.0 31 123-155 86-116 (167)
203 PF09413 DUF2007: Domain of un 38.3 24 0.00052 20.4 1.6 31 3-33 2-32 (67)
204 cd06891 PX_Vps17p The phosphoi 37.2 24 0.00052 24.3 1.6 19 182-200 111-129 (140)
205 cd03003 PDI_a_ERdj5_N PDIa fam 37.0 43 0.00092 21.0 2.7 55 3-61 23-83 (101)
206 COG3150 Predicted esterase [Ge 35.7 40 0.00087 24.2 2.5 33 2-34 3-35 (191)
207 cd02955 SSP411 TRX domain, SSP 35.0 1.4E+02 0.003 20.0 5.0 63 4-66 21-97 (124)
208 cd02965 HyaE HyaE family; HyaE 34.2 83 0.0018 20.7 3.7 59 3-65 32-98 (111)
209 cd02994 PDI_a_TMX PDIa family, 33.2 54 0.0012 20.5 2.7 51 3-57 21-76 (101)
210 KOG2824 Glutaredoxin-related p 32.7 53 0.0011 25.4 2.9 59 12-72 149-211 (281)
211 PF01323 DSBA: DSBA-like thior 31.1 74 0.0016 22.6 3.5 34 2-35 2-40 (193)
212 cd02987 Phd_like_Phd Phosducin 30.4 1.2E+02 0.0026 21.6 4.4 58 4-66 89-151 (175)
213 PF00392 GntR: Bacterial regul 30.4 90 0.002 17.8 3.2 28 135-164 4-32 (64)
214 PF04564 U-box: U-box domain; 30.0 1.2E+02 0.0027 17.9 4.7 27 51-78 14-40 (73)
215 cd02959 ERp19 Endoplasmic reti 30.0 1.6E+02 0.0035 19.2 5.5 60 3-64 24-91 (117)
216 PTZ00443 Thioredoxin domain-co 29.8 2.4E+02 0.0052 21.2 7.9 72 3-78 57-140 (224)
217 COG3011 Predicted thiol-disulf 29.3 1.9E+02 0.0042 19.9 6.0 74 2-77 10-87 (137)
218 TIGR01068 thioredoxin thioredo 28.1 1.5E+02 0.0031 18.0 6.8 55 3-61 19-79 (101)
219 cd03004 PDI_a_ERdj5_C PDIa fam 27.5 71 0.0015 20.0 2.6 52 2-57 23-78 (104)
220 PF10022 DUF2264: Uncharacteri 27.4 2E+02 0.0043 23.4 5.5 133 53-194 98-238 (361)
221 cd02999 PDI_a_ERp44_like PDIa 27.0 80 0.0017 19.9 2.8 55 3-60 23-82 (100)
222 PRK15371 effector protein YopJ 26.4 3.2E+02 0.007 21.5 6.4 65 127-194 22-88 (287)
223 PF04705 TSNR_N: Thiostrepton- 26.0 8.6 0.00019 24.6 -1.8 36 2-37 51-86 (115)
224 cd02950 TxlA TRX-like protein 25.9 1.6E+02 0.0035 20.0 4.3 59 3-63 25-90 (142)
225 PF09314 DUF1972: Domain of un 23.9 69 0.0015 23.2 2.2 20 59-78 154-173 (185)
226 cd02996 PDI_a_ERp44 PDIa famil 23.6 2E+02 0.0043 18.1 5.1 55 3-61 23-89 (108)
227 cd02972 DsbA_family DsbA famil 23.6 98 0.0021 18.5 2.7 22 2-23 1-22 (98)
228 cd02993 PDI_a_APS_reductase PD 23.5 1.7E+02 0.0037 18.6 3.9 53 2-57 25-83 (109)
229 cd02985 TRX_CDSP32 TRX family, 23.4 1.7E+02 0.0037 18.4 3.8 60 3-63 20-84 (103)
230 cd02961 PDI_a_family Protein D 23.1 1.1E+02 0.0024 18.4 2.9 52 2-57 19-76 (101)
231 COG3118 Thioredoxin domain-con 22.7 3.9E+02 0.0085 21.2 7.2 74 2-79 47-132 (304)
232 PF09098 Dehyd-heme_bind: Quin 22.3 66 0.0014 22.8 1.7 20 59-78 47-68 (167)
233 cd03020 DsbA_DsbC_DsbG DsbA fa 21.8 1.7E+02 0.0036 21.1 3.9 21 2-22 81-101 (197)
234 PRK09266 hypothetical protein; 21.8 1.1E+02 0.0023 23.5 3.0 59 19-78 200-259 (266)
235 cd03002 PDI_a_MPD1_like PDI fa 21.6 2.1E+02 0.0045 17.9 4.0 58 2-61 22-85 (109)
236 PF13098 Thioredoxin_2: Thiore 21.3 80 0.0017 20.0 2.0 34 2-35 9-49 (112)
237 cd03005 PDI_a_ERp46 PDIa famil 20.4 2.2E+02 0.0048 17.4 4.5 56 2-61 20-84 (102)
238 PF11732 Thoc2: Transcription- 20.4 2.2E+02 0.0048 17.4 3.6 41 149-193 34-76 (77)
239 cd03024 DsbA_FrnE DsbA family, 20.2 1.4E+02 0.0031 21.3 3.3 33 2-34 1-41 (201)
240 PRK00293 dipZ thiol:disulfide 20.2 5.7E+02 0.012 22.3 7.3 58 4-62 480-547 (571)
241 TIGR01764 excise DNA binding d 20.0 1.5E+02 0.0032 15.2 3.0 25 50-74 24-48 (49)
242 cd03021 DsbA_GSTK DsbA family, 20.0 1.6E+02 0.0035 21.5 3.6 33 2-34 3-39 (209)
No 1
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=5.7e-40 Score=242.91 Aligned_cols=207 Identities=53% Similarity=0.899 Sum_probs=172.5
Q ss_pred eecccCCCchhHHHHHHHHHcCCceeEEEeecCC-CCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCCC
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~-~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~~ 81 (212)
+||++..|++++++|++|+++||+|+.+.+++.. ++...+++.+.||.+++|+|++||.+++||.+|++||++++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 6899999999999999999999999999998743 345567899999999999999999999999999999999998777
Q ss_pred CCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhh--cCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchH
Q 028170 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEK--AGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (212)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (212)
+.|.++.+++++++|+.++...+.+............. ..++...+...+.+.+.|+.||++|++++++|++|+++|+
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ 160 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPTL 160 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCH
Confidence 99999999999999999987666543222222221111 1122334556677999999999999875567999999999
Q ss_pred HHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCCCCCCC
Q 028170 160 ADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEKQPDAP 210 (212)
Q Consensus 160 aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~p 210 (212)
|||++++.+.++ ...+..++.||+|++|+++|.++|+++++....+|++|
T Consensus 161 ADi~~~~~l~~~-~~~~~~~~~~p~l~~~~~~~~~rp~~~~~~~~~~~~~~ 210 (210)
T TIGR01262 161 ADLCLVPQVYNA-ERFGVDLTPYPTLRRIAAALAALPAFQRAHPENQPDTP 210 (210)
T ss_pred HHHHHHHHHHHH-HHcCCCcccchHHHHHHHHHhcCHHHHHhCcccCCCCC
Confidence 999999999987 56666678999999999999999999999999988876
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=2.1e-40 Score=245.12 Aligned_cols=197 Identities=25% Similarity=0.382 Sum_probs=166.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCC
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~ 80 (212)
||+||+++.|++|++++++|+++|++|+.+.+++. .+.+++.++||.|+||+|++||.+++||.+|++||++++++.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 79999999999999999999999999999999864 456799999999999999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHH
Q 028170 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
.|.|.++.++++++.|+.++...+..... .. . .+.++..+...+.+...|+.+|++|++ ++|++|+++|+|
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~~~~~~~~~----~~-~--~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~A 157 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIEKDWYSLMN----KI-V--NGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSLV 157 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HH-h--cCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccHH
Confidence 89999999999999998877654332211 11 1 112344566777889999999999987 799999999999
Q ss_pred HHhhHHHHHHHHHhcccCC--CCcchHHHHHHHHhCCcchhhhCCCCCCCCC
Q 028170 161 DLYLAPQLYAAVNRFNLDM--TQFPLLLRLHEAYSKLPAFQNAVPEKQPDAP 210 (212)
Q Consensus 161 D~~~~~~l~~~~~~~~~~~--~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~p 210 (212)
|+++++.+.++ ...+.++ ..+|+|++|++++.++|++++++....++++
T Consensus 158 D~~l~~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~~~~ 208 (211)
T PRK09481 158 DCYLAPLLWRL-PVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMR 208 (211)
T ss_pred HHHHHHHHHHH-HhcCCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHHHHh
Confidence 99999999887 5556554 5799999999999999999999887655543
No 3
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=221.88 Aligned_cols=208 Identities=53% Similarity=0.911 Sum_probs=193.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCC-CCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG-EQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~ 80 (212)
.+||.++.|..+++||++|..+||+|+.+++++..+ .....+|.+.||.++||+|++||.+++||.||++||++.+|++
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~p 85 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDP 85 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCC
Confidence 479999999999999999999999999999999875 4556799999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHH
Q 028170 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
.|+|.++..|+.++++...+.+.+.|.....+..++..+..... ..+....+.+.|..||+.|..+.+.|-+||.+|+|
T Consensus 86 pLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~-~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiA 164 (217)
T KOG0868|consen 86 PLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYG-DQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIA 164 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchh-hHHHHHHHHHhHHHHHHHHHHccCCcccCceeehh
Confidence 99999999999999999999999999988888888877653323 66777778899999999999988999999999999
Q ss_pred HHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCCCCCCCC
Q 028170 161 DLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEKQPDAPS 211 (212)
Q Consensus 161 D~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~p~ 211 (212)
|+++.+.++.. .++..++..||-+.+..+.....|.|+.+++.++|++|.
T Consensus 165 Dl~L~pqv~nA-~rf~vdl~PYPti~ri~e~l~elpaFq~ahP~nQPD~P~ 214 (217)
T KOG0868|consen 165 DLCLPPQVYNA-NRFHVDLTPYPTITRINEELAELPAFQAAHPDNQPDTPP 214 (217)
T ss_pred hhccchhhhhh-hhccccCCcCchHHHHHHHHHhCHHHHhcCCCCCCCCCC
Confidence 99999999999 999999999999999999999999999999999999995
No 4
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=3.6e-39 Score=239.24 Aligned_cols=200 Identities=26% Similarity=0.347 Sum_probs=162.4
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEee-----CC--eeeeeHHHHHHHH
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-----GD--FVVSDSFAILMYL 73 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~-----~~--~~~~es~~I~~yl 73 (212)
|||||+.+ +++|++|+++|+++||+|+.+.+++..++.+.+++.++||.|+||+|++ || .+++||.+|++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 89999876 7999999999999999999999998777777889999999999999996 45 4799999999999
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 028170 74 EEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYAT 153 (212)
Q Consensus 74 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~ 153 (212)
+++++ .+.|.++.+++++++|+.+..+.+.+.+..............+...+.....+.+.|..+|++|++ ++|++
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 155 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLEN--SPWLG 155 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhcc--Ccccc
Confidence 99986 467888999999999999988777654322100000011112344556667788999999999987 79999
Q ss_pred CCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCCC
Q 028170 154 GDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEKQ 206 (212)
Q Consensus 154 G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 206 (212)
|+++|+||+++++.+... ...+..++.||+|.+|+++|.++|++++++....
T Consensus 156 Gd~~t~ADi~l~~~~~~~-~~~~~~~~~~P~l~~w~~r~~~rp~~~~~~~~~~ 207 (215)
T PRK13972 156 GENYSIADIACWPWVNAW-TRQRIDLAMYPAVKNWHERIRSRPATGQALLKAQ 207 (215)
T ss_pred CCCCCHHHHHHHHHHHHH-hhcCCcchhCHHHHHHHHHHHhCHHHHHHHHHhc
Confidence 999999999998877554 3345567889999999999999999988876553
No 5
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=2.8e-38 Score=234.42 Aligned_cols=201 Identities=28% Similarity=0.319 Sum_probs=166.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCC-
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQP- 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~- 80 (212)
||||+++.|+++++++++|+++|++|+.+.++...++.+.+++.++||.|+||+|++||.+++||.+|++||++++++.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~~ 82 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQG 82 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCcC
Confidence 7999999999999999999999999999999987777788899999999999999999999999999999999999743
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHcccchhhHHHHH-HHhh---hhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCC
Q 028170 81 -PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVV-KYIE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (212)
Q Consensus 81 -~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (212)
.|.|.++.+++++++|+.+..+.+.+....... ..+. ....+.+..+....++.+.|+.+|++|++ ++|++|+
T Consensus 83 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 160 (214)
T PLN02473 83 TDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLAT--NRYLGGD 160 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhcc--CCcccCC
Confidence 589999999999999999988777654322221 1121 11112345566778899999999999987 7899999
Q ss_pred CchHHHHhhHHHHHHHHHhccc--CCCCcchHHHHHHHHhCCcchhhhCCC
Q 028170 156 EVFLADLYLAPQLYAAVNRFNL--DMTQFPLLLRLHEAYSKLPAFQNAVPE 204 (212)
Q Consensus 156 ~~t~aD~~~~~~l~~~~~~~~~--~~~~~p~l~~~~~~~~~~p~~~~~~~~ 204 (212)
++|+||+++++.+.++...... .++.+|+|.+|++++.++|++++++..
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 9999999999998876222221 257899999999999999999998754
No 6
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=9.8e-39 Score=236.64 Aligned_cols=199 Identities=26% Similarity=0.281 Sum_probs=163.5
Q ss_pred CeeecccC--CCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCC
Q 028170 1 MLKLFSYW--RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 1 m~~Ly~~~--~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~ 78 (212)
||+||+.+ .|++|++++++|+++||+|+.+.+++..++...+++.+.||.|+||+|++||.+++||.+|++||+++++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 79999975 6999999999999999999999999987777789999999999999999999999999999999999998
Q ss_pred CCC---CCCCCHHHHHHHHHHHHHHHcccchhhHHHH-HHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccC
Q 028170 79 QPP---LLPSDLKRKAINYQAANIVSSSIQPLQNLAV-VKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATG 154 (212)
Q Consensus 79 ~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 154 (212)
+.. ++|.++.+++++++|+.+....+.+...... ...+.. ...+...+...+.+.+.++.+|++|++ +++|++|
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~l~G 162 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAG-AKKAPLSEAGKAAAEKLFAVAERLLAP-GQPNLFG 162 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccC-CCCCcccHHHHHHHHHHHHHHHHHHhc-CCCEeeC
Confidence 655 9999999999999999998765543221111 011111 112334455667789999999999985 2579999
Q ss_pred CCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 155 DEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 155 ~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
+ +|+||+++++.+.++ ...+..+. |+|.+|++|+.++|+|++++++.
T Consensus 163 ~-~TlADi~l~~~l~~~-~~~~~~~~--p~l~~~~~r~~~rp~~~~~~~~~ 209 (214)
T PRK15113 163 E-WCIADTDLALMLNRL-VLHGDEVP--ERLADYATFQWQRASVQRWLALS 209 (214)
T ss_pred C-ccHHHHHHHHHHHHH-HHcCCCCC--HHHHHHHHHHhcCHHHHHHHHHh
Confidence 6 999999999999887 55555443 99999999999999999987654
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=6.8e-37 Score=224.98 Aligned_cols=196 Identities=24% Similarity=0.380 Sum_probs=162.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCC-CCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHHHhCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQ 79 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~~~~~~ 79 (212)
|+|||...| ++++++++|+++||+|+.+.+++..++ ...+++.++||.|+||+|+ +||.+|+||.+|++||++++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 689998766 799999999999999999999987543 3457899999999999998 6889999999999999999987
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCch
Q 028170 80 PPLL-PSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVF 158 (212)
Q Consensus 80 ~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t 158 (212)
..+. |.++.+++++++|+.+..+.+.+.+... +... ..++......+.+.+.|+.+|+.|+. ++|++|+++|
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s 152 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPL----FRPD-TPEEYKPTVRAQLEKKFQYVDEALAD--EQWICGQRFT 152 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhc----cCCC-ChHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCCc
Confidence 6666 5578899999999998876665432211 1111 12333455677899999999999987 7899999999
Q ss_pred HHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCCC
Q 028170 159 LADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEKQ 206 (212)
Q Consensus 159 ~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 206 (212)
+||+++++.+.++ ...+.+++.+|+|.+|++++.++|++++++.+..
T Consensus 153 ~ADi~l~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~k~~~~~~~ 199 (201)
T PRK10542 153 IADAYLFTVLRWA-YAVKLNLEGLEHIAAYMQRVAERPAVAAALKAEG 199 (201)
T ss_pred HHhHHHHHHHHHh-hccCCCcccchHHHHHHHHHHcCHHHHHHHHHcc
Confidence 9999999999887 5666667889999999999999999999987653
No 8
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=7.1e-36 Score=221.75 Aligned_cols=201 Identities=26% Similarity=0.363 Sum_probs=163.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCC--
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-- 79 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~-- 79 (212)
++||+... +++++++++|+++|++|+.+.+++..++...+++.+.||.|+||+|+++|.+++||.+|++||+++++.
T Consensus 3 ~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 78998554 569999999999999999999998766677789999999999999999999999999999999999974
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHH-HHhh---hhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCC
Q 028170 80 PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVV-KYIE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (212)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (212)
..+.|.++.+++++++|+.+....+.+.+..... ..+. .....++..+...+.+.+.++.||++|++ ++|++|+
T Consensus 82 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~ 159 (215)
T PLN02395 82 PDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSK--SKYLAGD 159 (215)
T ss_pred cCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcC--CccccCC
Confidence 3599999999999999999987766544322211 1111 11123344566778899999999999987 7999999
Q ss_pred CchHHHHhhHHHHHHHHHhcc--cCCCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 156 EVFLADLYLAPQLYAAVNRFN--LDMTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 156 ~~t~aD~~~~~~l~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
++|+||+++++.+.++....+ ..++.+|+|++|++++.++|++++++...
T Consensus 160 ~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~~ 211 (215)
T PLN02395 160 FVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKEVLAKY 211 (215)
T ss_pred CcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHHHHHHh
Confidence 999999999998877622222 23578999999999999999999987654
No 9
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=219.40 Aligned_cols=194 Identities=38% Similarity=0.545 Sum_probs=168.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCC-eeeeeHHHHHHHHHHhCCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD-FVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~-~~~~es~~I~~yl~~~~~~~ 80 (212)
|+||+++.||+|+++++++.++|++|+.+.+++.. +...+++..+||.|+||+|+++| .+++||.+|++||+++||..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 68999999999999999999999999999999987 67789999999999999999665 49999999999999999966
Q ss_pred CCCCCCHH---HHHHHHHHHHHHHcccchhhHHHHHHHhhhhcC-cchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCC
Q 028170 81 PLLPSDLK---RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAG-ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDE 156 (212)
Q Consensus 81 ~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~ 156 (212)
.+.|.++. +++++..|+.+....+.+.+............. .++..+.....+...++.+|+.|+. ++|++|++
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~ 157 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLAD--GPYLAGDR 157 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCC
Confidence 59998874 888888999999888887766554443212222 3566778888899999999999998 89999999
Q ss_pred chHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchh
Q 028170 157 VFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQ 199 (212)
Q Consensus 157 ~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 199 (212)
+|+||+++++.+.++ ...+..++.+|++.+|++|+.++|.++
T Consensus 158 ~tiAD~~~~~~~~~~-~~~~~~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 158 FTIADIALAPLLWRL-ALLGEELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CCHHHHHHHHHHHHh-hhcCcccccChHHHHHHHHHHcCCchh
Confidence 999999999999987 777777789999999999999999964
No 10
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=1.3e-35 Score=218.21 Aligned_cols=198 Identities=23% Similarity=0.258 Sum_probs=158.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHHHhCCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~~~~~~~ 80 (212)
|+||++..||++++||++|+++|++|+.+.++...+ ..++.+.||.|++|+|+ ++|.+++||.+|++||++++++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~---~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA---DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC---chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999998886532 34566789999999998 78899999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHH
Q 028170 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
.|.|.++.+++++++|..+..+.+..................++..+.....+...|+.+|++|.+ ++ ++|+++|+|
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~-l~Gd~~t~A 154 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD--GT-LKTDTVNLA 154 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccCCCcCHH
Confidence 799999999999999988876655443322222111111223344556777899999999999986 67 999999999
Q ss_pred HHhhHHHHHHHHHh-cccC-CCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 161 DLYLAPQLYAAVNR-FNLD-MTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 161 D~~~~~~l~~~~~~-~~~~-~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
|+++++.+.++... .+.. ...+|+|.+|++++.++|+|+++.+..
T Consensus 155 Di~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~~ 201 (202)
T PRK10357 155 TIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFARTEPPK 201 (202)
T ss_pred HHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhhcCCCC
Confidence 99999999876221 2222 367999999999999999999986543
No 11
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=1.7e-35 Score=225.13 Aligned_cols=201 Identities=26% Similarity=0.365 Sum_probs=160.0
Q ss_pred CeeecccCCCchhHHHHHHHHHc------CCceeEEEeecCCCCCCChhhhhcCCCcccceEeeC----CeeeeeHHHHH
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLK------GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAIL 70 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~------~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~----~~~~~es~~I~ 70 (212)
|||||+. .|++|++|+++|+++ |++|+.+.+++..++...+++.++||.|+||+|+++ |.+++||.+|+
T Consensus 44 ~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 6899986 499999999999997 899999999987776778899999999999999953 36999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhh-hhcCcchHHHHHHHHHHHHHHHHHHHHhccCC
Q 028170 71 MYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIE-EKAGADERDIWAKTHIGKGFAALEKLLKDYAG 149 (212)
Q Consensus 71 ~yl~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 149 (212)
+||+++++ .|.|.++.+++++++|+.+..... ......+...+. .....+...+....++.+.|+.||++|++ +
T Consensus 123 ~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~--~ 197 (264)
T PRK11752 123 LYLAEKFG--AFLPKDLAARTETLNWLFWQQGSA-PFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAE--H 197 (264)
T ss_pred HHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhcc--C
Confidence 99999997 499999999999999999876543 211111111111 11112334455667788999999999987 7
Q ss_pred CcccCCCchHHHHhhHHHHHHHHHh--cc----cCCCCcchHHHHHHHHhCCcchhhhCCCCCC
Q 028170 150 KYATGDEVFLADLYLAPQLYAAVNR--FN----LDMTQFPLLLRLHEAYSKLPAFQNAVPEKQP 207 (212)
Q Consensus 150 ~~l~G~~~t~aD~~~~~~l~~~~~~--~~----~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 207 (212)
+|++|+++|+|||++++.+.++... +. .+++.||+|++|+++|.++|+++++...+.-
T Consensus 198 ~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~~ 261 (264)
T PRK11752 198 EYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNRT 261 (264)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcccc
Confidence 8999999999999999988766211 11 2357899999999999999999999887743
No 12
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=3.6e-35 Score=216.12 Aligned_cols=197 Identities=20% Similarity=0.248 Sum_probs=147.4
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCC-CChhhh--hcCCCcccceEeeCCeeeeeHHHHHHHHHHhC
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQ-FSPDFL--KINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~-~~~~~~--~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~ 77 (212)
+++|||++.+++++++|++|+++|++|+.+.+.....+. ..+++. +.||+|++|+|++||.+++||.||++||++++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~ 83 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKY 83 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 379999999999999999999999999999774210000 001112 47999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCc
Q 028170 78 PQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEV 157 (212)
Q Consensus 78 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 157 (212)
+ +.+.+..+++.++.+.....+........ ..+ .++..+...+.+.+.|..||++|++++++|++|+++
T Consensus 84 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~ 152 (205)
T PTZ00057 84 K---ICGESELNEFYADMIFCGVQDIHYKFNNT---NLF-----KQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNL 152 (205)
T ss_pred C---CCCCCHHHHHHHHHHHHHHHHHHHHHhhh---HHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcc
Confidence 7 45555555555555444332222111110 011 112234566788999999999998644589999999
Q ss_pred hHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCCCCC
Q 028170 158 FLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEKQPD 208 (212)
Q Consensus 158 t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 208 (212)
|+||+++++.+.++....+.+++.||+|.+|++|+.++|++++++.++..+
T Consensus 153 T~AD~~l~~~~~~~~~~~~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~~~ 203 (205)
T PTZ00057 153 TYADLAVFNLYDDIETKYPNSLKNFPLLKAHNEFISNLPNIKNYISNRKES 203 (205)
T ss_pred cHHHHHHHHHHHHHHHhChhhhccChhHHHHHHHHHhChHHHHHHHhCCCc
Confidence 999999999988873335666799999999999999999999999988643
No 13
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-33 Score=203.16 Aligned_cols=194 Identities=26% Similarity=0.427 Sum_probs=164.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcC-CCcccceEeeCCeeeeeHHHHHHHHHHhCC-C
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALVDGDFVVSDSFAILMYLEEKYP-Q 79 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p~~~~P~l~~~~~~~~es~~I~~yl~~~~~-~ 79 (212)
++||++..||++++++++|+++||+|+.+..++. ++.+++++.| +.++||||+.+|.+|+||..|++||++.++ +
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 6899999999999999999999999999999976 3789999999 679999999999999999999999999999 5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchH
Q 028170 80 PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (212)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (212)
++++|.||.+|++.+.|+.+++..+......... .. .++..+...+.+...|..||+.|.. +++|+.|+++++
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~----~~--~~e~~~~~~~e~~e~l~~lE~el~k-~k~~fgG~~~G~ 159 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFVVA----AK--GGEEQEAAKEELREALKVLEEELGK-GKDFFGGETIGF 159 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHh----hc--CchHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCcCH
Confidence 8999999999999999999999766443222111 11 3455667778899999999999994 489999999999
Q ss_pred HHHhhHHHHHHHH---Hhcc---c-CCCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 160 ADLYLAPQLYAAV---NRFN---L-DMTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 160 aD~~~~~~l~~~~---~~~~---~-~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
+|+++++.+.... ...+ . ..+.+|+|.+|.+||.++|.++++++..
T Consensus 160 vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~ 212 (231)
T KOG0406|consen 160 VDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDS 212 (231)
T ss_pred hhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCH
Confidence 9999998776552 2222 1 2478999999999999999999998754
No 14
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-33 Score=200.14 Aligned_cols=199 Identities=21% Similarity=0.232 Sum_probs=163.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPP 81 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~~ 81 (212)
+||+|++.++++..+|++++++|++|+++++...+. ....+...|+|++|+|..||..+.||.||+|||+++++
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g--- 77 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG--- 77 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC---
Confidence 799999999999999999999999999999996532 34445558999999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHH-HHHHHHHHHHHHHHHHHhccCCCcccCCCchHH
Q 028170 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDI-WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
+.++++.|.++++++++.+.+.....+...+.....+. .+...+ .........++.+++.|+.+++.|++|+++|+|
T Consensus 78 l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~--~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGK--SEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhcc--chhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHH
Confidence 99999999999999999998876553322222111111 112122 666778899999999999777899999999999
Q ss_pred HHhhHHHHHHHHHhcc-cCCCCcchHHHHHHHHhCCcchhhhCCCCCCC
Q 028170 161 DLYLAPQLYAAVNRFN-LDMTQFPLLLRLHEAYSKLPAFQNAVPEKQPD 208 (212)
Q Consensus 161 D~~~~~~l~~~~~~~~-~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 208 (212)
|+.++..+..+...+. ..++.+|+|+++.+++.++|.+++++++++..
T Consensus 156 Dl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r~~t 204 (206)
T KOG1695|consen 156 DLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIKKYLESRPVT 204 (206)
T ss_pred HHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchHHHHHhcCCCC
Confidence 9999999998833233 33678899999999999999999999999654
No 15
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=203.89 Aligned_cols=200 Identities=37% Similarity=0.488 Sum_probs=174.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCC-CC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP-QP 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~-~~ 80 (212)
|+||++..++.|+++.+++.++|++|+.+.++...+++..++|.++||.++||+|+++|..++||.||+.||.++|+ ..
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~~ 82 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPLG 82 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999997 33
Q ss_pred C-CCCCCHHHHHHHHHHHHHHHcccchhh--HHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCc
Q 028170 81 P-LLPSDLKRKAINYQAANIVSSSIQPLQ--NLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEV 157 (212)
Q Consensus 81 ~-l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 157 (212)
. ++|.+..+++.+++|+.+..+.+.+.. ...+.+..................+...++.+|+.|.+ +.|+.|+++
T Consensus 83 ~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~--~~yl~g~~~ 160 (226)
T KOG0867|consen 83 GILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKT--QVYLAGDQL 160 (226)
T ss_pred cccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHcc--CCcccCCcc
Confidence 4 999999999999999999999887753 33333322233235677788889999999999999998 899999999
Q ss_pred hHHHHhhHHHHHHHH-Hhc-ccCCCCcchHHHHHHHHhCCcchhhhCC
Q 028170 158 FLADLYLAPQLYAAV-NRF-NLDMTQFPLLLRLHEAYSKLPAFQNAVP 203 (212)
Q Consensus 158 t~aD~~~~~~l~~~~-~~~-~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 203 (212)
|+||+.+++.+..+. ... .....++|++.+|++++.++|.+++...
T Consensus 161 tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~ 208 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPAYEEANE 208 (226)
T ss_pred cHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCccHHHHHH
Confidence 999999999998873 222 3346899999999999999999888653
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=4.9e-32 Score=200.47 Aligned_cols=180 Identities=29% Similarity=0.347 Sum_probs=138.5
Q ss_pred ccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCCCCCCC
Q 028170 6 SYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPS 85 (212)
Q Consensus 6 ~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~~l~p~ 85 (212)
++..||+|++++++|+++|++|+.+.+++.. +.+++.+.||.|+||+|++||.+++||.+|++||++++++..+.
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~---~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~-- 90 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSD---KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK-- 90 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCccc---CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--
Confidence 4567999999999999999999999999863 45689999999999999999999999999999999999865453
Q ss_pred CHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhH
Q 028170 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~ 165 (212)
++.++++++..+.. .+. .+..... ..+.....+.+.|+.+|++|+..+++|++|+++|+||++++
T Consensus 91 ~~~~~a~i~~~~~~-------~~~----~~~~~~~----~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~ 155 (213)
T PLN02378 91 TPAEFASVGSNIFG-------TFG----TFLKSKD----SNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLA 155 (213)
T ss_pred CHHHHHHHHHHHHH-------HHH----HHHhcCC----hhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHH
Confidence 46666665543221 111 1111111 11223356778899999999854479999999999999999
Q ss_pred HHHHHHHHhcc----cC-CCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 166 PQLYAAVNRFN----LD-MTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 166 ~~l~~~~~~~~----~~-~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
+.+.++....+ .. .+.+|+|++|+++|.++|++++++...
T Consensus 156 ~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~ 200 (213)
T PLN02378 156 PKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEE 200 (213)
T ss_pred HHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCeecccCCh
Confidence 99877522111 22 378999999999999999999987764
No 17
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=5e-31 Score=195.50 Aligned_cols=180 Identities=25% Similarity=0.303 Sum_probs=140.5
Q ss_pred CCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCC---CCCCC
Q 028170 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ---PPLLP 84 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~---~~l~p 84 (212)
+.||+|++++++|+++|++|+.+.+++.. +.+++.++||.|++|+|+++|.+++||.+|++||++.++. +.+.|
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 56999999999999999999999999873 4689999999999999999999999999999999999974 33555
Q ss_pred CCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhcc----------------C
Q 028170 85 SDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDY----------------A 148 (212)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~----------------~ 148 (212)
.++..++... +++ ..+. .++... .++..+...+.+.+.|+.||+.|.+. +
T Consensus 94 ~~~~~~~~~~---~l~-----~~~~----~~~~~~--~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~ 159 (236)
T TIGR00862 94 KHPESNTAGL---DIF-----AKFS----AYIKNS--NPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSR 159 (236)
T ss_pred CCHHHHHHHH---HHH-----HHHH----HHHHcC--CHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccC
Confidence 5554433221 111 1111 111111 23334455666899999999999731 3
Q ss_pred CCcccCCCchHHHHhhHHHHHHHHHh-----cccC-CCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 149 GKYATGDEVFLADLYLAPQLYAAVNR-----FNLD-MTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 149 ~~~l~G~~~t~aD~~~~~~l~~~~~~-----~~~~-~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
++|+.|+++|+|||++++.+.++ .. .+.+ .+.+|+|++|++++.++|+|+++++..
T Consensus 160 ~~f~~Gd~~tlaD~~l~p~l~~l-~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~ 221 (236)
T TIGR00862 160 RKFLDGDELTLADCNLLPKLHIV-KVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDD 221 (236)
T ss_pred CCcccCCccchhhHHHHHHHHHH-HHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCCh
Confidence 79999999999999999999888 43 2566 589999999999999999999997764
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=2.3e-31 Score=196.84 Aligned_cols=185 Identities=21% Similarity=0.209 Sum_probs=136.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHHHhCCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~~~~~~~ 80 (212)
||||++..||+|++++++|+++||+|+.+.++... .. .-.+.||.++||+|+ +||.+++||.+|++||+++|+++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~--~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EA--TPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hh--hHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999998886432 11 125688999999995 88999999999999999999865
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHH-------------Hhhh----hcCc-c---hHHHHHHHHHHHHHHH
Q 028170 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK-------------YIEE----KAGA-D---ERDIWAKTHIGKGFAA 139 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----~~~~-~---~~~~~~~~~~~~~l~~ 139 (212)
.+.+ .+++.+++|+.+....+...+...+.. .+.. ..+. + +..+...+.+.+.|+.
T Consensus 77 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (210)
T PRK10387 77 LLTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRA 153 (210)
T ss_pred cCCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHH
Confidence 4432 256778888877655443322111100 0000 0000 0 1113556788999999
Q ss_pred HHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcch
Q 028170 140 LEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 140 le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 198 (212)
+|++|+ ++|++|+++|+||+++++.+.++ ...+. .+.+|+|.+|++||.++|++
T Consensus 154 le~~L~---~~~l~G~~~s~ADi~l~~~l~~~-~~~~~-~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 154 LDPLIV---KPNAVNGELSTDDIHLFPILRNL-TLVKG-IEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHhc---CccccCCCCCHHHHHHHHHHhcc-eeecC-CCCCHHHHHHHHHHHHHhCC
Confidence 999996 38999999999999999999988 44322 34569999999999999876
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=2.5e-30 Score=195.79 Aligned_cols=177 Identities=25% Similarity=0.350 Sum_probs=137.8
Q ss_pred cCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCCCCCCCC
Q 028170 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSD 86 (212)
Q Consensus 7 ~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~~l~p~~ 86 (212)
...||+|++++++|+++|++|+.+.+++. .+.+++.++||.|+||+|+++|.+++||.+|++||++++++..+. +
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~ 144 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--T 144 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--C
Confidence 34599999999999999999999999875 357889999999999999988889999999999999999976554 4
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHH
Q 028170 87 LKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~ 166 (212)
+.+++++..++... +...+.... +. ....+.+.+.|+.||++|++ +++|++|+++|+||+++++
T Consensus 145 ~~era~i~~~l~~~-----------~~~~~~~~~--~~--~~~~~~l~~~l~~LE~~L~~-~g~yl~Gd~~SlADi~l~p 208 (265)
T PLN02817 145 PPEKASVGSKIFST-----------FIGFLKSKD--PG--DGTEQALLDELTSFDDYIKE-NGPFINGEKISAADLSLGP 208 (265)
T ss_pred HHHHHHHHHHHHHH-----------HHHHhccCC--cc--hHHHHHHHHHHHHHHHHHhc-CCCeeCCCCCCHHHHHHHH
Confidence 67777776643211 111111111 11 11235677889999999985 2699999999999999999
Q ss_pred HHHHHHHhcc----cC-CCCcchHHHHHHHHhCCcchhhhCCC
Q 028170 167 QLYAAVNRFN----LD-MTQFPLLLRLHEAYSKLPAFQNAVPE 204 (212)
Q Consensus 167 ~l~~~~~~~~----~~-~~~~p~l~~~~~~~~~~p~~~~~~~~ 204 (212)
.+.++....+ .+ .+.+|+|++|++++.++|+|+++...
T Consensus 209 ~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~~~~~~ 251 (265)
T PLN02817 209 KLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFVKTRAL 251 (265)
T ss_pred HHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHhhcCCC
Confidence 9987622222 22 37899999999999999999998764
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=2.2e-28 Score=180.37 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=130.3
Q ss_pred eecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHHHhCCCCC
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPP 81 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~~~~~~~~ 81 (212)
|||++..||+|+++|++|+++|++|+.+.+.... . ....+.||.+++|+|+ +||.+++||.+|++||+++|+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~--~--~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDD--E--ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCc--c--hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 6999999999999999999999999987665321 1 2236889999999998 899999999999999999998643
Q ss_pred CCCCCHHHHHHHHHHHHHHHcccchhhHHHHH-------------HHhhhhc----Cc----chHHHHHHHHHHHHHHHH
Q 028170 82 LLPSDLKRKAINYQAANIVSSSIQPLQNLAVV-------------KYIEEKA----GA----DERDIWAKTHIGKGFAAL 140 (212)
Q Consensus 82 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~----~~----~~~~~~~~~~~~~~l~~l 140 (212)
+.|. .+.++.+|+.++...+...+...+. ..+.... +. ....+.....+...|+.+
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 153 (209)
T TIGR02182 77 LTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL 153 (209)
T ss_pred CCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH
Confidence 4332 3455666666544433222110000 0010000 00 000134567788999999
Q ss_pred HHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCCCCcc-hHHHHHHHHhCCcch
Q 028170 141 EKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFP-LLLRLHEAYSKLPAF 198 (212)
Q Consensus 141 e~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 198 (212)
|++|++ ++|+.| ++|+||+++++.+.++ ...+. . .+| +|.+|++||.+++++
T Consensus 154 e~~L~~--~~~l~g-~~TiADi~l~~~l~~~-~~~~~-~-~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 154 DKLIDG--PNAVNG-ELSEDDILVFPLLRNL-TLVAG-I-NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHhC--ccccCC-CCCHHHHHHHHHhcCe-eeecC-C-CCChHHHHHHHHHHHHhCC
Confidence 999987 899955 6999999999999887 43322 2 256 999999999998875
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.94 E-value=1e-25 Score=162.71 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=151.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCC-C
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-P 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~-~ 80 (212)
+.||+++.|-.+||||++++++||+|+...|++..++...++|..+||.+.|||+++++.+|.++.-|+.|+++.+.+ .
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ger 106 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGER 106 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhcccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999998863 4
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHcc--------------c-----chhhH---HHHH-------HHhhhhc----------
Q 028170 81 PLLPS-DLKRKAINYQAANIVSSS--------------I-----QPLQN---LAVV-------KYIEEKA---------- 120 (212)
Q Consensus 81 ~l~p~-~~~~~~~~~~~~~~~~~~--------------~-----~~~~~---~~~~-------~~~~~~~---------- 120 (212)
.|.|+ +..+..++.......... + .|... .... .....+.
T Consensus 107 ~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ak 186 (325)
T KOG4420|consen 107 VLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYLAK 186 (325)
T ss_pred cccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence 57776 222222222221111100 0 01000 0000 0000000
Q ss_pred -----------CcchHHHHHHHHHHHHHHHHHHHHhcc--CCCcccCCCchHHHHhhHHHHHHHHHhcccC---C--CCc
Q 028170 121 -----------GADERDIWAKTHIGKGFAALEKLLKDY--AGKYATGDEVFLADLYLAPQLYAAVNRFNLD---M--TQF 182 (212)
Q Consensus 121 -----------~~~~~~~~~~~~~~~~l~~le~~L~~~--~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~---~--~~~ 182 (212)
.+....+.+.+.+..+|+.+|.-|..+ ..+|++|+.+|+||+.+...++++ ..+|++ + ...
T Consensus 187 qkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL-~~Lg~e~~yw~~gsr 265 (325)
T KOG4420|consen 187 QKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRL-KFLGLEKKYWEDGSR 265 (325)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHH-HHcccHHHhcccCCC
Confidence 022345566677778888888888753 258999999999999999999999 777865 3 478
Q ss_pred chHHHHHHHHhCCcchhhhCCC
Q 028170 183 PLLLRLHEAYSKLPAFQNAVPE 204 (212)
Q Consensus 183 p~l~~~~~~~~~~p~~~~~~~~ 204 (212)
|+|..|+.|+.+|+++++++..
T Consensus 266 pnle~Yf~rvrrR~sf~kvlg~ 287 (325)
T KOG4420|consen 266 PNLESYFERVRRRFSFRKVLGD 287 (325)
T ss_pred ccHHHHHHHHHhhhHHHHhhhh
Confidence 9999999999999999998754
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.92 E-value=7.1e-24 Score=178.72 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=131.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHHHhCCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~~~~~~~ 80 (212)
++||+.+.|+ +.++.++|++.|++|+.+. .+|.|++|+|+ +||.+++||.+|++||++.+++.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 6899877665 6679999999999998864 25799999999 68899999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHH
Q 028170 81 PLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLA 160 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~a 160 (212)
.|.|.++.+++++++|+.+...... ...+...|+.||++|+. ++|++|+++|+|
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~~~~~------------------------~~~l~~~L~~LE~~L~~--rtYLvGd~lTLA 120 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAPTFSS------------------------GSEFENACEYVDGYLAS--RTFLVGYSLTIA 120 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccc------------------------HHHHHHHHHHHHHHhcc--CCeecCCCCCHH
Confidence 8999999999999999998754210 01345678999999987 899999999999
Q ss_pred HHhhHHHHHHHH-Hhccc-CCCCcchHHHHHHHHhCCcc------hhhhCCC
Q 028170 161 DLYLAPQLYAAV-NRFNL-DMTQFPLLLRLHEAYSKLPA------FQNAVPE 204 (212)
Q Consensus 161 D~~~~~~l~~~~-~~~~~-~~~~~p~l~~~~~~~~~~p~------~~~~~~~ 204 (212)
|+++++.+.... ..... ....||+|.+|++++.++|+ ++++...
T Consensus 121 DIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs~~~~~~~~a~~~~ 172 (722)
T PLN02907 121 DIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYSDILNEVTAAYVGK 172 (722)
T ss_pred HHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCCcchhhHHHHHHHh
Confidence 999999886541 11122 25789999999999999999 5555543
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.7e-20 Score=129.44 Aligned_cols=183 Identities=25% Similarity=0.295 Sum_probs=139.1
Q ss_pred cCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCCCCCCCC
Q 028170 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSD 86 (212)
Q Consensus 7 ~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~~l~p~~ 86 (212)
-..||+||++.+.|+.++++|.+..|++. .+.+++....|.+++|+|..|+.+++||..|-++|++.++.+.+.--+
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~ 94 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLA 94 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccC
Confidence 35699999999999999999999999976 356788899999999999999999999999999999999864332211
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhc-cCCCcccCCCchHHHHhhH
Q 028170 87 LKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~t~aD~~~~ 165 (212)
+.|.+.+- .+.+ ..+ ..+.... .+...+.....+.+.|..||++|.. +.++|+.|+++|.||+.+.
T Consensus 95 ~~E~asag------~diF-~kF----~~fi~ks--k~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLl 161 (221)
T KOG1422|consen 95 PPESASAG------SDIF-AKF----SAFIKKS--KDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLL 161 (221)
T ss_pred CHHHHhhH------HHHH-HHH----HHHHhCc--hhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhc
Confidence 22222211 1111 111 1111111 3445566777888999999999997 6789999999999999999
Q ss_pred HHHHHHHHhcc----cCC-CCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 166 PQLYAAVNRFN----LDM-TQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 166 ~~l~~~~~~~~----~~~-~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
+-|+-+.-..+ .++ +.++++++|+..+.++.+|..+.+..
T Consensus 162 PKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d 206 (221)
T KOG1422|consen 162 PKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTNTCPAD 206 (221)
T ss_pred hhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhcCCchH
Confidence 99987722222 233 67899999999999999999887654
No 24
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.83 E-value=3e-20 Score=116.58 Aligned_cols=77 Identities=47% Similarity=0.709 Sum_probs=70.9
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeC---CeeeeeHHHHHHHHHHhC
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG---DFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~---~~~~~es~~I~~yl~~~~ 77 (212)
|++||+++. |+|++++++|+++|++|+.+.+++..++...+++.+.||.+++|+|+++ |..++||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 899999885 9999999999999999999999986656677899999999999999976 899999999999999998
Q ss_pred C
Q 028170 78 P 78 (212)
Q Consensus 78 ~ 78 (212)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 25
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.83 E-value=2.6e-20 Score=114.11 Aligned_cols=73 Identities=38% Similarity=0.606 Sum_probs=68.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
++||+++.|++|+++|++|+++|++|+.+.+++..++.+.+++.++||.|++|+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999987766777899999999999999999999999999999985
No 26
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.82 E-value=8.4e-20 Score=112.61 Aligned_cols=74 Identities=45% Similarity=0.671 Sum_probs=69.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~ 75 (212)
|+||+++.||+|++++++|+++|++|+.+.+++..++...+++.+.||.+++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999999876666778999999999999999989999999999999974
No 27
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.81 E-value=1.3e-19 Score=112.21 Aligned_cols=76 Identities=49% Similarity=0.751 Sum_probs=70.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~ 77 (212)
++||+++.|++|++++++|+++|++|+.+.++...++...+++.+.||.+++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999987666666789999999999999999999999999999999875
No 28
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.81 E-value=7.2e-20 Score=113.57 Aligned_cols=75 Identities=28% Similarity=0.278 Sum_probs=66.2
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEee--CCeeeeeHHHHHHHHHHhC
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD--GDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~--~~~~~~es~~I~~yl~~~~ 77 (212)
|++||+++.||+|++++++|+++||+|+.+.+. .++...+++.+.||.+++|+|++ +|.+++||.+|++||++++
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~--~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCP--KGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECC--CChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 899999999999999999999999999998875 22234568889999999999995 4789999999999999875
No 29
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.80 E-value=1.9e-19 Score=111.14 Aligned_cols=73 Identities=47% Similarity=0.761 Sum_probs=68.3
Q ss_pred ecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCC
Q 028170 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ 79 (212)
Q Consensus 4 Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~ 79 (212)
||++..||+|+|+|++|+++||+|+.+.++... ..+++.+.||.+++|+|++||.+++||.+|++||++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999553 4788999999999999999999999999999999999985
No 30
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.80 E-value=2.4e-19 Score=111.09 Aligned_cols=75 Identities=48% Similarity=0.725 Sum_probs=69.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHh
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~ 76 (212)
++||+++.||+|+++|++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 799999999999999999999999999999998665566788999999999999999999999999999999864
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.79 E-value=6.1e-19 Score=108.43 Aligned_cols=73 Identities=41% Similarity=0.666 Sum_probs=67.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
++||+++.||+|++++++|+++|++|+.+.+++..++...+++.+.||.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999976656677889999999999999998999999999999984
No 32
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.79 E-value=6.5e-19 Score=108.24 Aligned_cols=73 Identities=40% Similarity=0.513 Sum_probs=66.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
|+||+++.|+++++++++|+++|++|+.+.++...++...+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998865445567889999999999999999999999999999984
No 33
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.78 E-value=1e-18 Score=107.45 Aligned_cols=73 Identities=40% Similarity=0.567 Sum_probs=67.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~ 77 (212)
|+||+.+.||+|++++++|+++|++|+.+.++.. ...+++.+.||.+++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998854 456788999999999999999999999999999999874
No 34
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.78 E-value=1.1e-18 Score=107.52 Aligned_cols=73 Identities=36% Similarity=0.606 Sum_probs=66.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCC-cccceEeeCCeeeeeHHHHHHHHHHhC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~~P~l~~~~~~~~es~~I~~yl~~~~ 77 (212)
|+||++..||+|+++|++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988864 456788899995 999999999999999999999999863
No 35
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.78 E-value=1.4e-18 Score=107.69 Aligned_cols=76 Identities=46% Similarity=0.710 Sum_probs=68.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~ 78 (212)
|+||+++. +++++++++|+++|++|+.+.++...+..+.+++.+.||.+++|+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58998875 68999999999999999999999765556778899999999999999999999999999999999874
No 36
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.78 E-value=1.6e-18 Score=107.69 Aligned_cols=76 Identities=41% Similarity=0.550 Sum_probs=68.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeC-CeeeeeHHHHHHHHHHhCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~-~~~~~es~~I~~yl~~~~~ 78 (212)
|+||+++.+ .++++|++|+++|++|+.+.++...++.+.+++.+.||.+++|+|+++ |..++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589998865 589999999999999999999987666778899999999999999965 8999999999999999875
No 37
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.78 E-value=1.5e-18 Score=107.19 Aligned_cols=74 Identities=50% Similarity=0.745 Sum_probs=66.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCC-cccceEeeC-CeeeeeHHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPI-GYVPALVDG-DFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~~P~l~~~-~~~~~es~~I~~yl~~ 75 (212)
|+|+++..+++++++|++|+++|++|+.+.+++..++.+.+++.+.||. |++|+|+++ |.+++||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 5677777777999999999999999999999988777777999999999 999999988 9999999999999985
No 38
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.77 E-value=1.2e-18 Score=107.43 Aligned_cols=73 Identities=44% Similarity=0.626 Sum_probs=66.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~ 74 (212)
|+||+++.||+|+++|++|+++|++|+.+.+++..+....+++.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999999865555667899999999999999 68899999999999985
No 39
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.77 E-value=7.9e-19 Score=107.74 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=65.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHh
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~ 76 (212)
++|||++.|++|+++|++|+++|++|+.+.++.. ...+++.+.||.+++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 6899999999999999999999999999999862 23457888999999999999999999999999999863
No 40
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.77 E-value=1.8e-18 Score=106.30 Aligned_cols=73 Identities=58% Similarity=0.955 Sum_probs=68.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
|+||++..|++|+++|++|+++|++|+.+.+++..+....+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987666667889999999999999999999999999999985
No 41
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.77 E-value=2.1e-18 Score=106.51 Aligned_cols=73 Identities=29% Similarity=0.422 Sum_probs=66.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEee-CCeeeeeHHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~-~~~~~~es~~I~~yl~~ 75 (212)
.|||+++.|++|++++++|+++|++|+.+.+++..+ .+.+++.++||.+++|+|+. +|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 1 GTLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CeEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 379999999999999999999999999999997543 66789999999999999995 68999999999999986
No 42
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.76 E-value=1.6e-17 Score=112.19 Aligned_cols=117 Identities=45% Similarity=0.794 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcC--cchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhH
Q 028170 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAG--ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~ 165 (212)
.+++++++|+.++.+.+.+.+...+........+ .+...+...+.+.+.|+.+|++|++++++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 4789999999999988876533333322222111 23334445567899999999999853358999999999999999
Q ss_pred HHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 166 PQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 166 ~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
+.+.++ ...+.++..+|+|++|++++.++|+|+++.+.+
T Consensus 82 ~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 82 PQVYNA-RRFGVDLSPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHH-HHhCCCcccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 999887 556666789999999999999999999998765
No 43
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.76 E-value=5.1e-18 Score=106.89 Aligned_cols=69 Identities=23% Similarity=0.257 Sum_probs=63.8
Q ss_pred CCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCC
Q 028170 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ 79 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~ 79 (212)
..||+|+++|++|+++||+|+.+.+++. ...+++.++||.|++|+|+++|.+++||.+|++||+++++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 4699999999999999999999999975 35688999999999999999999999999999999999864
No 44
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.75 E-value=2.2e-18 Score=105.64 Aligned_cols=72 Identities=26% Similarity=0.270 Sum_probs=64.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~ 75 (212)
++||+++.|++|+++|++|+++|++|+.+.++...+ ...++.+.||.+++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~--~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW--PELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh--hhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 689999999999999999999999999999986532 224478899999999999999999999999999974
No 45
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.75 E-value=6.5e-18 Score=105.83 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=63.5
Q ss_pred eecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCC-Chhhh-h----cCCCcccceEeeCCeeeeeHHHHHHHHHHh
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQF-SPDFL-K----INPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~-~~~~~-~----~~p~~~~P~l~~~~~~~~es~~I~~yl~~~ 76 (212)
+|||+..++.|+++|++|+++|++|+.+.+++..++.. .+++. . .+|.++||+|++||.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 79999999999999999999999999999998654432 23333 1 239999999999999999999999999987
Q ss_pred C
Q 028170 77 Y 77 (212)
Q Consensus 77 ~ 77 (212)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 46
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.75 E-value=6.7e-18 Score=104.17 Aligned_cols=68 Identities=32% Similarity=0.395 Sum_probs=62.1
Q ss_pred CeeecccC-------CCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHH
Q 028170 1 MLKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 1 m~~Ly~~~-------~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl 73 (212)
|++||++. .||+|++++++|+++|++|+.+.++. .+.+|.+++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 89999988 68999999999999999999988773 25789999999999999999999999999
Q ss_pred HHhCC
Q 028170 74 EEKYP 78 (212)
Q Consensus 74 ~~~~~ 78 (212)
+++++
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 47
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.5e-17 Score=111.75 Aligned_cols=186 Identities=18% Similarity=0.208 Sum_probs=124.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHHHhCCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQP 80 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~~~~~~~ 80 (212)
||||-+..||+|-++|+++..+|||++.+-..-.+. ..+ ...-...+||+|+ ++|..+.||..|.+|+++..+++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe-~Tp---~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDE-ETP---IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcc-cCh---hhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 799999999999999999999999999988874321 111 1222356899999 89999999999999999998854
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc----ccchhhHHH---------HHHHhhhhcC-cc-------hHHHHHHHHHHHHHHH
Q 028170 81 PLLPSDLKRKAINYQAANIVSS----SIQPLQNLA---------VVKYIEEKAG-AD-------ERDIWAKTHIGKGFAA 139 (212)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~---------~~~~~~~~~~-~~-------~~~~~~~~~~~~~l~~ 139 (212)
-+-.. .+..++.|...+.. .+.|-+... ..+++..+.. .. ..-.....++...++.
T Consensus 77 ~lt~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~ 153 (215)
T COG2999 77 LLTGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRA 153 (215)
T ss_pred hhccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHH
Confidence 33332 23344445444433 333311111 0111111110 00 2234556677788888
Q ss_pred HHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchh
Q 028170 140 LEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQ 199 (212)
Q Consensus 140 le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 199 (212)
++.++.. ..-+-| .+|.-|+.+|+.+..+....|..++ .++..|..+|.+...+.
T Consensus 154 l~~Li~~--~s~~n~-~l~~ddi~vFplLRnlt~v~gi~wp--s~v~dy~~~msektqV~ 208 (215)
T COG2999 154 LDKLIVG--PSAVNG-ELSEDDILVFPLLRNLTLVAGIQWP--SRVADYRDNMSEKTQVN 208 (215)
T ss_pred HHHHhcC--cchhcc-ccchhhhhhhHHhccceecccCCCc--HHHHHHHHHHHHhhCcc
Confidence 8888875 332334 5999999999999988445555454 48999999999876554
No 48
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.73 E-value=1.4e-16 Score=116.34 Aligned_cols=171 Identities=20% Similarity=0.185 Sum_probs=123.5
Q ss_pred CCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCCCCCCCCHH
Q 028170 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPSDLK 88 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~~l~p~~~~ 88 (212)
.||+|.|+...|...+|||+.+...+. ..++.|++|.++-||..+.+|..|..+|.++++-+..++ ++
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~~----------~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~L~--~e 127 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSLK----------RRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDDLS--AE 127 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccce----------eeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCCCC--HH
Confidence 499999999999999999998876631 345689999999999999999999999999997443233 56
Q ss_pred HHHHHHHHHHHHHcccchh----------------------------hHHHH-HHHhhhh--------cCcchHHHHHHH
Q 028170 89 RKAINYQAANIVSSSIQPL----------------------------QNLAV-VKYIEEK--------AGADERDIWAKT 131 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~-~~~~~~~--------~~~~~~~~~~~~ 131 (212)
++++..++...+++.+.-. +...+ ...+..+ .++=+ .+...+
T Consensus 128 ~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~IG~f~-~~Ei~e 206 (281)
T KOG4244|consen 128 QRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAIGDFE-SAEIDE 206 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccccCcC-HHHHHH
Confidence 6777776666655432110 00000 1111111 11111 222556
Q ss_pred HHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccC-----CCCcchHHHHHHHHhC
Q 028170 132 HIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-----MTQFPLLLRLHEAYSK 194 (212)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~-----~~~~p~l~~~~~~~~~ 194 (212)
-+.+-|+.++..|++ .+||+|+++|-+|+++|+.|..+...+... -..+|+|.+|++||++
T Consensus 207 ll~rDlr~i~~~Lg~--KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 207 LLHRDLRAISDYLGD--KKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred HHHHHHHHHHHHhCC--CccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 667889999999998 899999999999999999999884432222 2789999999999986
No 49
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.73 E-value=1.9e-17 Score=101.10 Aligned_cols=68 Identities=31% Similarity=0.519 Sum_probs=62.4
Q ss_pred eecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEee-CCeeeeeHHHHHHHH
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~-~~~~~~es~~I~~yl 73 (212)
+||++..||+|++++++|+++|++|+.+.+++. ...+++.+.||.+++|+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK---NKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC---CCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999975 34578899999999999996 599999999999997
No 50
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.73 E-value=1.6e-17 Score=105.79 Aligned_cols=71 Identities=34% Similarity=0.431 Sum_probs=64.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeC-CeeeeeHHHHHHHHH
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLE 74 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~-~~~~~es~~I~~yl~ 74 (212)
|++||+++.||+|++++++|+++|++|+.+.++... ..+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 689999999999999999999999999999988642 34668899999999999965 899999999999985
No 51
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.72 E-value=1.9e-17 Score=101.13 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=60.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeC-CeeeeeHHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~-~~~~~es~~I~~yl~~ 75 (212)
|+||++..||+|+++|++|+++|++|+.+.++... .....+.+|.+++|+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999998887421 2234567899999999964 8999999999999974
No 52
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.72 E-value=3.3e-17 Score=102.00 Aligned_cols=71 Identities=24% Similarity=0.247 Sum_probs=61.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhh-----cCCCcccceEeeCCeeeeeHHHHHHHHHHh
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLK-----INPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~P~l~~~~~~~~es~~I~~yl~~~ 76 (212)
++|||++.++.|++++++|++.|++|+.+.++.. +++.+ ..|.+++|+|++||.+++||.||++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~ 75 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGK 75 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHH
Confidence 5899999999999999999999999999998842 22222 236899999999999999999999999999
Q ss_pred CC
Q 028170 77 YP 78 (212)
Q Consensus 77 ~~ 78 (212)
++
T Consensus 76 ~~ 77 (79)
T cd03077 76 YN 77 (79)
T ss_pred cC
Confidence 86
No 53
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.71 E-value=3.8e-17 Score=103.09 Aligned_cols=70 Identities=39% Similarity=0.518 Sum_probs=60.9
Q ss_pred CCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeC-CeeeeeHHHHHHHHHHhCC
Q 028170 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG-DFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~-~~~~~es~~I~~yl~~~~~ 78 (212)
..||+|+++|++|+++|++|+.+.+++........++ +.||.+++|+|+++ |..++||.+|++||+++++
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5699999999999999999999999876544333445 78999999999987 8999999999999999874
No 54
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=3.2e-17 Score=100.71 Aligned_cols=70 Identities=33% Similarity=0.403 Sum_probs=63.6
Q ss_pred eeecccCCCchhHHHHHHHHH--cCCceeEEEeecCCCCCCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL--KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~--~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~ 74 (212)
|+||++..||+|+++|++|++ +|++|+.+.++.. .+.+++.+.||.+++|+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 689999999999999999999 8999999998853 4567889999999999998 68899999999999985
No 55
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.71 E-value=7.2e-17 Score=107.79 Aligned_cols=111 Identities=25% Similarity=0.283 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHH-h-hhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKY-I-EEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~ 166 (212)
+++++++|+.+..+.+.+.+....... . ......+...+...+++.+.++.+|+.|++ ++|++|+++|+|||++++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~aDi~~~~ 79 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAG--GPYLLGDRFSVADAYLFV 79 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeCCCcchHHHHHHH
Confidence 578999999999888877654322211 1 001112445667788899999999999986 799999999999999999
Q ss_pred HHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhC
Q 028170 167 QLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAV 202 (212)
Q Consensus 167 ~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 202 (212)
.+.++ ...+.+++.+|+|.+|+++|.++|++++++
T Consensus 80 ~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 80 VLRWA-PGVGLDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHH-hhcCCChhhChHHHHHHHHHHhCHHhHhhC
Confidence 99887 555666678999999999999999999864
No 56
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.70 E-value=2.6e-16 Score=115.56 Aligned_cols=187 Identities=18% Similarity=0.163 Sum_probs=118.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCC--
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQ-- 79 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~-- 79 (212)
++||.+..||+|-|||.+|.+.||+|+++.|++-. ..+ .+.+...+||+|...|..+.||.+|+.-|+.....
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~----r~e-Ik~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL----RQE-IKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchh----hhh-ccccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 68999999999999999999999999999999642 222 23445789999996666799999999887554310
Q ss_pred C------CCCCC-----------------------------CHHHHHHHHHHHHHHHcccchhhHHHHHH----------
Q 028170 80 P------PLLPS-----------------------------DLKRKAINYQAANIVSSSIQPLQNLAVVK---------- 114 (212)
Q Consensus 80 ~------~l~p~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 114 (212)
. +++|. +.......+.|-+|.++.+-.+++.-+++
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFe 245 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFE 245 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHH
Confidence 0 12231 11112234456666555432111111100
Q ss_pred Hh-----------------------------hhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhH
Q 028170 115 YI-----------------------------EEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 115 ~~-----------------------------~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~ 165 (212)
++ .......-......+.+.+.++..-..|+. .++|+.|++|++||+++|
T Consensus 246 wf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk-nr~flGG~kPnLaDLsvf 324 (370)
T KOG3029|consen 246 WFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK-NRPFLGGKKPNLADLSVF 324 (370)
T ss_pred HHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCchhhhhhh
Confidence 00 000000111122334455555666666754 389999999999999999
Q ss_pred HHHHHHHHhcc--cCCCCcchHHHHHHHHhCC
Q 028170 166 PQLYAAVNRFN--LDMTQFPLLLRLHEAYSKL 195 (212)
Q Consensus 166 ~~l~~~~~~~~--~~~~~~p~l~~~~~~~~~~ 195 (212)
+++..+ .... .+.-+..++..||.+|++.
T Consensus 325 Gvl~sm-~gc~afkd~~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 325 GVLRSM-EGCQAFKDCLQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhhHh-hhhhHHHHHHhcchHHHHHHHHHHH
Confidence 999987 3333 2234567999999999873
No 57
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.70 E-value=1.7e-16 Score=106.01 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhH
Q 028170 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~ 165 (212)
++..++++++|+.+....+.+.+.......... ++..+.....+.+.|+.+|++|++ ++|++|+++|+||++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~~le~~L~~--~~yl~Gd~~tlADi~l~ 76 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYP----EESEEEYRQQAEAFLKDLEARLQQ--HSYLLGDKPSLADWAIF 76 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcC----cccHHHHHHHHHHHHHHHHHHHcc--CCccCCCCccHHHHHHH
Confidence 578899999999999988877654433322111 124667788899999999999997 79999999999999999
Q ss_pred HHHHHHHHhc---ccCCCCcchHHHHHHHHhCCcchhhhC
Q 028170 166 PQLYAAVNRF---NLDMTQFPLLLRLHEAYSKLPAFQNAV 202 (212)
Q Consensus 166 ~~l~~~~~~~---~~~~~~~p~l~~~~~~~~~~p~~~~~~ 202 (212)
+.+.++ ... +..++.+|+|++|++++.++|++++++
T Consensus 77 ~~l~~~-~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 77 PFVRQF-AHVDPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHHH-HHhhhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 988766 322 233589999999999999999999863
No 58
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.69 E-value=5.4e-16 Score=104.39 Aligned_cols=110 Identities=21% Similarity=0.200 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHHHcccchhhHHHH-HHHhhh-------hcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCC
Q 028170 84 PSDLKRKAINYQAANIVSSSIQPLQNLAV-VKYIEE-------KAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (212)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (212)
|.++.+++++++|+.+..+.+.+.+.... ...... ....+...+....++.+.|+.+|++|++ ++|++|+
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~Gd 79 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAK--KGYFVGD 79 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHcc--CCCCCCC
Confidence 46788999999999999888877654322 221111 0113445566777899999999999987 7999999
Q ss_pred CchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCc
Q 028170 156 EVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLP 196 (212)
Q Consensus 156 ~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p 196 (212)
++|+||+++++.+.++ ...+.....+|+|.+|++++.++|
T Consensus 80 ~~t~ADi~l~~~~~~~-~~~~~~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 80 KLTAADIMMSFPLEAA-LARGPLLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCHHHHHHHHHHHHH-HHcCcccccCchHHHHHHHHhcCC
Confidence 9999999999999887 554545789999999999999987
No 59
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.69 E-value=2.5e-16 Score=105.04 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcccchhhHHHH-HHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAV-VKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~ 167 (212)
+++++++|+.|....+.+.+.... ...+.. ...+...+....++.+.|+.+|+.|++ ++|++|+++|+|||++++.
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l~~~ 77 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAP-EKIPYAIERYTNEAKRLYGVLDKRLAG--RDYLAGDEYSIADIAIFPW 77 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHHHHHHcc--CCcccCCCCCeeeeeHHHH
Confidence 468899999999998887654332 222221 224556677888899999999999986 8999999999999999999
Q ss_pred HHHHHHhcccC-CCCcchHHHHHHHHhCCcchhhhC
Q 028170 168 LYAAVNRFNLD-MTQFPLLLRLHEAYSKLPAFQNAV 202 (212)
Q Consensus 168 l~~~~~~~~~~-~~~~p~l~~~~~~~~~~p~~~~~~ 202 (212)
+.+. ...+.. .+.+|++.+|++++.++|++++++
T Consensus 78 ~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 78 VRRL-EWIGIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHH-HhccccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 9887 545554 678999999999999999999875
No 60
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.69 E-value=3.5e-16 Score=107.68 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l 168 (212)
+.++++++++.+.+.+.......+ .......+.......+.+...|+.||++|++++++|++|+++|+||+++++.+
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l 79 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPF---LPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAI 79 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHH
Confidence 678888888888776644332211 11111111223444556789999999999844478999999999999999999
Q ss_pred HHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCCCCC
Q 028170 169 YAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEKQPD 208 (212)
Q Consensus 169 ~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~ 208 (212)
.++....+..+..||+|.+|++++.++|++++++.++...
T Consensus 80 ~~~~~~~~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~~~ 119 (137)
T cd03208 80 LMVEELDPSLLSDFPLLQAFKTRISNLPTIKKFLQPGSPR 119 (137)
T ss_pred HHHHHhchhhhccChHHHHHHHHHHcCHHHHHHHhcCCCC
Confidence 9873223334689999999999999999999999987543
No 61
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.68 E-value=7.4e-16 Score=101.76 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHH
Q 028170 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~ 167 (212)
.++++++.|+.++.+.+.+.+..... . .++..+...+.+.+.|..+|++|++ ++|++|+++|+|||++++.
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~ 72 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK----G---RKKEAEKARKELRESLLALAPVFAH--KPYFMSEEFSLVDCALAPL 72 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----C---cHHHHHHHHHHHHHHHHHHHHHHcC--CCcccCCCCcHHHHHHHHH
Confidence 57899999999998877665433221 1 1444566788899999999999987 8999999999999999999
Q ss_pred HHHHHHhcccCC-CCcchHHHHHHHHhCCcchhhh
Q 028170 168 LYAAVNRFNLDM-TQFPLLLRLHEAYSKLPAFQNA 201 (212)
Q Consensus 168 l~~~~~~~~~~~-~~~p~l~~~~~~~~~~p~~~~~ 201 (212)
+.++ ...+..+ ..+|+|++|++++.++|+++++
T Consensus 73 ~~~~-~~~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 73 LWRL-PALGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HHHH-HHcCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 8665 4456544 5799999999999999999875
No 62
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.68 E-value=1.5e-16 Score=96.60 Aligned_cols=68 Identities=57% Similarity=0.866 Sum_probs=57.8
Q ss_pred CCchhHHHHHHHHHcCCceeEEEeecC-CCCCCChhhhhcCCCcccceEee-CCeeeeeHHHHHHHHHHh
Q 028170 9 RSSCSHRVRIGLNLKGLEYEYKAVNLV-KGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~~~~~~~~~~-~~~~~~~~~~~~~p~~~~P~l~~-~~~~~~es~~I~~yl~~~ 76 (212)
.|||++|++++|+++|++|+...+... .+..+.+++.+.||.++||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 489999999999999999999988543 23455689999999999999995 889999999999999874
No 63
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.68 E-value=1.8e-16 Score=98.33 Aligned_cols=71 Identities=27% Similarity=0.338 Sum_probs=61.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeC----CeeeeeHHHHHHHHHHhC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDG----DFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~----~~~~~es~~I~~yl~~~~ 77 (212)
++||+++.||+|++++++|+++|++|+.+.+++.. ..+ .+.+|.+++|+|+++ |.+++||.+|++||++..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 68999999999999999999999999999887431 223 356999999999944 789999999999999875
No 64
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.9e-16 Score=112.62 Aligned_cols=192 Identities=21% Similarity=0.240 Sum_probs=137.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCce--eEEEee--cCCCCC--CCh-----------------hhhhcCCC----cccc
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEY--EYKAVN--LVKGEQ--FSP-----------------DFLKINPI----GYVP 54 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~--~~~~~~--~~~~~~--~~~-----------------~~~~~~p~----~~~P 54 (212)
+.||.+-.||++++..++=+++|++= .+..++ +....+ ..+ -|....|. -+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 56899999999999999999999862 222222 111110 000 01112222 2699
Q ss_pred eEeeC--C-eeeeeHHHHHHHHHHhCCC-----CCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHH
Q 028170 55 ALVDG--D-FVVSDSFAILMYLEEKYPQ-----PPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERD 126 (212)
Q Consensus 55 ~l~~~--~-~~~~es~~I~~yl~~~~~~-----~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (212)
||-|. . .+-.||..|++.+...+.+ ..|+| ..-+.+++.+..++.+.+..-+. .. +-...+++-
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP--~~Lr~eId~~n~~Iy~~vNNGVY---k~---GFA~tq~aY 203 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYP--EALRTEIDELNKWIYDTVNNGVY---KA---GFATTQEAY 203 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCC--HHHHHHHHHHHhhhcccccCcee---ee---cccchHHHH
Confidence 99954 3 4558999999999876652 35788 55689999999999887654321 00 111245667
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhc-c---c---CCCCcchHHHHHHHHhCCcchh
Q 028170 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF-N---L---DMTQFPLLLRLHEAYSKLPAFQ 199 (212)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~-~---~---~~~~~p~l~~~~~~~~~~p~~~ 199 (212)
+...+.+-..|+.||+.|++ +.|++|+++|-||+-+++.|.++...+ + + .+..||+|..|.+.+.+.|+|+
T Consensus 204 eea~~~lF~~Ld~lE~~L~~--~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~ 281 (324)
T COG0435 204 EEAVKKLFEALDKLEQILSE--RRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFA 281 (324)
T ss_pred HHHHHHHHHHHHHHHHHhhc--CeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccc
Confidence 77778888999999999998 899999999999999999998772111 1 1 2467999999999999999999
Q ss_pred hhCC
Q 028170 200 NAVP 203 (212)
Q Consensus 200 ~~~~ 203 (212)
.++.
T Consensus 282 ~T~d 285 (324)
T COG0435 282 ETVD 285 (324)
T ss_pred cccc
Confidence 8764
No 65
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.67 E-value=4.7e-16 Score=104.53 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l 168 (212)
+++++++|+.+....+.+.+...+...... .+...+...+.+.+.|+.+|++|++ ++|++|+++|+||+++++.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~s~aDi~l~~~~ 76 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFG---GAEPPEEKLDKLEEALDFLETFLEG--SDYVAGDQLTIADLSLVATV 76 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHHHHHHcc--CCeeCCCCcCHHHHHHHHHH
Confidence 578899999998887766543333322111 1234556777899999999999986 78999999999999999999
Q ss_pred HHHHHh-cccCCCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 169 YAAVNR-FNLDMTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 169 ~~~~~~-~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
.++ .. .+.+...+|+|.+|+++|.++|++++.....
T Consensus 77 ~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 113 (118)
T cd03177 77 STL-EALLPLDLSKYPNVRAWLERLKALPPYEEANGKG 113 (118)
T ss_pred HHH-HHhcCCChhhCchHHHHHHHHHcccchHHHHHHH
Confidence 988 44 5555678999999999999999999865443
No 66
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.66 E-value=2.1e-15 Score=99.98 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHhh--hhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKYIE--EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~ 166 (212)
+++++++|+.+..+.+.+.+...+..... .....+...+...+++.+.|+.+|++|++ ++|++|+++|+||+++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~--~~~l~g~~~t~aDi~~~~ 79 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAG--RPYLAGDRFTLADIPLGC 79 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCcccCCCCCHHHHHHHH
Confidence 47889999999988888766543332221 11123355666788999999999999987 799999999999999999
Q ss_pred HHHHHHHhcccCCCCcchHHHHHHHHhCCcch
Q 028170 167 QLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 167 ~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 198 (212)
.+... ...+.....+|+|.+|++++.++|++
T Consensus 80 ~~~~~-~~~~~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 80 SAYRW-FELPIERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHH-HHcccccccCchHHHHHHHHHhCCCC
Confidence 88654 34444568999999999999999975
No 67
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.66 E-value=1.4e-15 Score=103.39 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCchHHHHhhHHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~aD~~~~~~ 167 (212)
+.+.++++++.+.+.........+.. .+.......+.+...|..||+.|+.+ +++|++|+++|+||+++++.
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~ 75 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQN-------YEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDL 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHH
Confidence 57788888887766553332221111 12334556677899999999999864 46899999999999999999
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCCCCC
Q 028170 168 LYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPEKQP 207 (212)
Q Consensus 168 l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 207 (212)
+.++....+..++.+|+|.+|+++|.++|++++++..+..
T Consensus 76 ~~~~~~~~~~~~~~~P~l~~~~~rv~~~p~v~~~~~~~~~ 115 (126)
T cd03210 76 LDIHLVLAPGCLDAFPLLKAFVERLSARPKLKAYLESDAF 115 (126)
T ss_pred HHHHHHhChHhhhcChHHHHHHHHHHhCcHHHHHHhCcCC
Confidence 9887322233468999999999999999999999988753
No 68
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.66 E-value=1.4e-15 Score=102.16 Aligned_cols=111 Identities=21% Similarity=0.163 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHH-HHhh---hhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhh
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVV-KYIE---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYL 164 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~ 164 (212)
+++++.+|+.+....+.+.+..... ..+. +...+++..+.....+.+.|+.||++|++ ++|++|+++|+|||++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l 79 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYLAGDSFTLADLSH 79 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--CcccCCCCccHHHHHH
Confidence 5788999999988877765443221 1111 11224455566788899999999999987 7999999999999999
Q ss_pred HHHHHHHHHhcc--cCCCCcchHHHHHHHHhCCcchhhhC
Q 028170 165 APQLYAAVNRFN--LDMTQFPLLLRLHEAYSKLPAFQNAV 202 (212)
Q Consensus 165 ~~~l~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~~~~~~ 202 (212)
++++.++ ...+ ...+.+|+|++|++++.++|++++++
T Consensus 80 ~~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 80 LPYLQYL-MATPFAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHH-HHccchhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 9999887 3222 23578999999999999999998864
No 69
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=5e-16 Score=95.15 Aligned_cols=68 Identities=38% Similarity=0.450 Sum_probs=61.2
Q ss_pred ccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 6 SYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 6 ~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
+...|+++++++++|+++|++|+.+.+++..+ ...+++.+.||.+++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 56789999999999999999999999997653 345789999999999999999999999999999984
No 70
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.65 E-value=1.7e-15 Score=102.24 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l 168 (212)
++++++++++.+.+.........+ .. ..++..+...+.+.+.|..||++|++ ++|++|+++|+||+++++.+
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~aDi~l~~~~ 73 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICY-----SP-DFEKLKPDYLAKLPDKLKLFSDFLGD--RPWFAGDKITYVDFLLYEAL 73 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhc-----Cc-chHHHHHHHHHHHHHHHHHHHHHhCC--CCCcCCCCccHHHHHHHHHH
Confidence 467888888887776543221111 11 12345566778889999999999987 78999999999999999999
Q ss_pred HHHHHhcc-cCCCCcchHHHHHHHHhCCcchhhhCCCCCC
Q 028170 169 YAAVNRFN-LDMTQFPLLLRLHEAYSKLPAFQNAVPEKQP 207 (212)
Q Consensus 169 ~~~~~~~~-~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 207 (212)
.++ ...+ ..++.||+|.+|++++.++|+++++++++..
T Consensus 74 ~~~-~~~~~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 74 DQH-RIFEPDCLDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred HHH-HHhCccccccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 888 4433 3368899999999999999999999998843
No 71
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.65 E-value=2.1e-15 Score=102.08 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l 168 (212)
+++++++|+.+....+.+.+...+.........++...+....++...|+.+|+.|+. ++|++|+++|+||+++++.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~siaDi~l~~~~ 78 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLK--RTYLVGERLTLADIFVAGAL 78 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHcc--CceeccCCccHHHHHHHHHH
Confidence 3678999999998888776654444333222223456777888899999999999987 79999999999999999999
Q ss_pred HHHHHhcccC---CCCcchHHHHHHHHhCCcchhhhCCCCC
Q 028170 169 YAAVNRFNLD---MTQFPLLLRLHEAYSKLPAFQNAVPEKQ 206 (212)
Q Consensus 169 ~~~~~~~~~~---~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 206 (212)
.++ .....+ ++.+|++.+|++++.++|++++++.+..
T Consensus 79 ~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 79 LLG-FTYVFDKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHH-HHHHcCHHHHHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 887 333322 3679999999999999999999987653
No 72
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.65 E-value=1.4e-15 Score=103.10 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l 168 (212)
++++.+.|++.++..+.+.... +.. ++..+...+.+...|+.+|+.|++.+++|++|+++|+||+++++.+
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~ 72 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKL-----LGA----PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWF 72 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHH-----Hhc----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHH
Confidence 4788999999987655443322 111 3344567778999999999999854579999999999999999999
Q ss_pred HHHHHhcc------cCCCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 169 YAAVNRFN------LDMTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 169 ~~~~~~~~------~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
.++ ...+ ..++.+|+|++|+++|.++|++++++..+
T Consensus 73 ~~~-~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~ 114 (124)
T cd03184 73 ERL-EALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDT 114 (124)
T ss_pred HHH-HHHHhhccccCCcccChHHHHHHHHhccChHHHHHhCCH
Confidence 876 3332 34688999999999999999999998765
No 73
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.64 E-value=3.1e-15 Score=100.37 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHHHcccchhhHHHHHHHh---h---hhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchH
Q 028170 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYI---E---EKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFL 159 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ 159 (212)
|+.+++++++|+.++...+.+.+...+.... . .....++..+....++.+.|..||+.|+. ++|++|+++|+
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~gd~~t~ 78 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAG--SPYVAGDRFTI 78 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcC--CCcccCCCCCH
Confidence 4678999999999987776654443322211 1 11223556778888999999999999987 78999999999
Q ss_pred HHHhhHHHHHHHHHhcccCC-CCcchHHHHHHHHhCCcch
Q 028170 160 ADLYLAPQLYAAVNRFNLDM-TQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 160 aD~~~~~~l~~~~~~~~~~~-~~~p~l~~~~~~~~~~p~~ 198 (212)
|||++++.+.++ ...+.++ ..+|+|.+|++++.++|++
T Consensus 79 aDi~l~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 79 ADITAFVGLDFA-KVVKLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHHhHHH-HhcCCCCccccHHHHHHHHHHHhccCC
Confidence 999999999887 5566655 6899999999999999974
No 74
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.64 E-value=3.1e-15 Score=101.69 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHH
Q 028170 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~ 167 (212)
.+++++++|+.+..+.+.+.+...+. . .++..+.....+.+.|+.+|++|+. ++|++|+++|+|||++++.
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~ADi~l~~~ 72 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLA----A---KGEEREKAKEEALEALKVLEEELGG--KPFFGGDTIGYVDIALGSF 72 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHc----c---chHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcchHHHHHHHH
Confidence 47899999999998877765543321 1 1344556777899999999999987 7999999999999999999
Q ss_pred HHHHHH---hccc---CCCCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 168 LYAAVN---RFNL---DMTQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 168 l~~~~~---~~~~---~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
+.++.. ..+. ....+|++.+|+++|.++|+++++....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 116 (126)
T cd03185 73 LGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDR 116 (126)
T ss_pred HHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHHhCCCH
Confidence 988621 1122 2477999999999999999999997764
No 75
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.64 E-value=1.2e-15 Score=92.59 Aligned_cols=71 Identities=51% Similarity=0.802 Sum_probs=62.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
++||+++.||+|++++++|+++|++|+.+.++...... .++.+.+|.+++|+|+.+|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQ--EEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCC--HHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998543211 257789999999999988999999999999984
No 76
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.63 E-value=4.1e-15 Score=103.10 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHH
Q 028170 88 KRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQ 167 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~ 167 (212)
..++++++|++|..+.+.+.+.. ... ..+++..+.....+...|+.||+.|++ ++|++|+++|+||+++++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~l~~LE~~L~~--~~yl~Gd~~TlADi~l~~~ 74 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYK----AGF--ATTQEAYDEAVDELFEALDRLEELLSD--RRYLLGDRLTEADIRLFTT 74 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHH----Hhh--ccCHHHHHHHHHHHHHHHHHHHHHHcc--CCeeeCCCccHHHHHHHHH
Confidence 35788999999999877664321 111 224566777888999999999999987 7999999999999999999
Q ss_pred HHHHHHh----cc---cCCCCcchHHHHHHHHhCCcchhhhCCC
Q 028170 168 LYAAVNR----FN---LDMTQFPLLLRLHEAYSKLPAFQNAVPE 204 (212)
Q Consensus 168 l~~~~~~----~~---~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 204 (212)
+.++... .. ..++.||+|.+|+++|.++|++++++..
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~ 118 (142)
T cd03190 75 LIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNF 118 (142)
T ss_pred HHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCH
Confidence 8765211 11 1246899999999999999999998764
No 77
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.60 E-value=1.5e-14 Score=98.39 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcccchhhHHHHHH-----HhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhh
Q 028170 90 KAINYQAANIVSSSIQPLQNLAVVK-----YIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYL 164 (212)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~ 164 (212)
++++++|+.+....+.+.+...... .+......++..+...+.+.+.++.+|++|.+ +++|++|+++|+|||++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLK-DKPFLAGDEISIADLSA 80 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCCCHHHHHH
Confidence 4677888888877665543322111 11112224566777888899999999997533 26899999999999999
Q ss_pred HHHHHHHHHhcccC-CCCcchHHHHHHHHhC--CcchhhhC
Q 028170 165 APQLYAAVNRFNLD-MTQFPLLLRLHEAYSK--LPAFQNAV 202 (212)
Q Consensus 165 ~~~l~~~~~~~~~~-~~~~p~l~~~~~~~~~--~p~~~~~~ 202 (212)
++.+.+. ...+.+ ++.+|+|.+|++++.+ +|+++++.
T Consensus 81 ~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 81 VCEIMQP-EAAGYDVFEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHH-HhcCCcccccCchHHHHHHHHHHhcchhHHHHH
Confidence 9988777 555654 5889999999999999 99998864
No 78
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.57 E-value=8.7e-15 Score=89.51 Aligned_cols=65 Identities=28% Similarity=0.333 Sum_probs=57.6
Q ss_pred eeecccC-------CCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYW-------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~-------~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
+.||.++ .||+|++++++|+++|++|+.+.++.. ..+|.+++|+|+++|..+.||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 4677766 799999999999999999999998842 17899999999999999999999999998
Q ss_pred Hh
Q 028170 75 EK 76 (212)
Q Consensus 75 ~~ 76 (212)
++
T Consensus 71 ~~ 72 (72)
T cd03054 71 KK 72 (72)
T ss_pred hC
Confidence 74
No 79
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.56 E-value=2.2e-14 Score=92.55 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=76.1
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCC
Q 028170 70 LMYLEEKYPQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAG 149 (212)
Q Consensus 70 ~~yl~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 149 (212)
+|||++.. .++|+++.+.++++.|++.....+.. .....+...++.+|++|++ +
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~~---------------------~~~~~~~~~l~~le~~L~~--~ 54 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLAE---------------------GSSKEKAAVLRALNSALGR--S 54 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHhc---------------------CCHHHHHHHHHHHHHHHcC--C
Confidence 47999994 49999999999999999976532210 0224456788899999987 8
Q ss_pred CcccCCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCC
Q 028170 150 KYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKL 195 (212)
Q Consensus 150 ~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~ 195 (212)
+|++|+++|+|||++++.+.+. +...+.+|+|.+|++||.++
T Consensus 55 ~fl~Gd~~tiADi~l~~~l~~~----~~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 55 PWLVGSEFTVADIVSWCALLQT----GLASAAPANVQRWLKSCENL 96 (96)
T ss_pred CccCCCCCCHHHHHHHHHHHHc----ccccccChHHHHHHHHHHhC
Confidence 9999999999999999887653 33457899999999999863
No 80
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.56 E-value=2.4e-14 Score=96.97 Aligned_cols=83 Identities=23% Similarity=0.298 Sum_probs=70.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhc--------------cCCCcccCCCchHHHHhhHHHHHHHHHh-----cccCC-CC
Q 028170 122 ADERDIWAKTHIGKGFAALEKLLKD--------------YAGKYATGDEVFLADLYLAPQLYAAVNR-----FNLDM-TQ 181 (212)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~le~~L~~--------------~~~~~l~G~~~t~aD~~~~~~l~~~~~~-----~~~~~-~~ 181 (212)
+++..+...+++...|+.||++|++ .+++|++|+++|+|||++++.+.++ .. .+..+ +.
T Consensus 23 ~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~-~~~~~~~~g~~i~~~ 101 (134)
T cd03198 23 NPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIV-KVVAKKYRNFEIPAD 101 (134)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHhhcCCCcccc
Confidence 4566788888999999999999986 2468999999999999999998866 22 25554 78
Q ss_pred cchHHHHHHHHhCCcchhhhCCCC
Q 028170 182 FPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 182 ~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
+|+|++|++++.+||+|++++...
T Consensus 102 ~P~L~aw~~ri~aRPsfk~t~~~~ 125 (134)
T cd03198 102 LTGLWRYLKNAYQREEFTNTCPAD 125 (134)
T ss_pred CHHHHHHHHHHHCCHHHHHHcCCH
Confidence 999999999999999999988654
No 81
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.56 E-value=2.1e-14 Score=95.79 Aligned_cols=112 Identities=19% Similarity=0.060 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHHH-HHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhH
Q 028170 87 LKRKAINYQAANIVSSSIQPLQNLAV-VKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~ 165 (212)
|.+++++..|+.++.+.+.+...... ...+.... .+...+...+.+.+.++.+|.+|+. +++|++| ++|+||++++
T Consensus 1 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~le~~l~~-~~~~l~G-~fSiAD~~l~ 77 (114)
T cd03195 1 PRQRARARQVQAWLRSDLLPIRVERSTEVVFAGAK-AEPLSEAAQAAAEKLIAVAEALLPP-GAANLFG-EWCIADTDLA 77 (114)
T ss_pred CHhhHHHHHHHHHHHhhHHHHHHhCCccceecCCC-CCCCCHHHHHHHHHHHHHHHHHHhc-CCCcccC-CccHHHHHHH
Confidence 35789999999999998876521111 11011111 1234456677788999999999974 3589999 5999999999
Q ss_pred HHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCC
Q 028170 166 PQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPE 204 (212)
Q Consensus 166 ~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 204 (212)
+.+.|+ ...+.+++ |++.+|.+|+.+||+|++.++.
T Consensus 78 ~~~~~~-~~~g~~l~--p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 78 LMLNRL-VLNGDPVP--ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHHhc
Confidence 999998 77888775 9999999999999999998753
No 82
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.55 E-value=1.2e-14 Score=95.28 Aligned_cols=76 Identities=25% Similarity=0.294 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCCC
Q 028170 125 RDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVPE 204 (212)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 204 (212)
.......++...++.+|++|++ ++|++|+++|+|||++++.+.++ ...+. +..+|+|++|++++.++|+++++.+.
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~--~~~l~g~~~t~aDi~~~~~~~~~-~~~~~-~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAK--GPYLLGERFTAADVLVGSPLGWG-LQFGL-LPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHcc--CCcccCCccCHHHHHHHHHHHHH-HHcCC-CCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 3455667899999999999987 79999999999999999999998 44443 57899999999999999999998754
No 83
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.1e-14 Score=103.06 Aligned_cols=194 Identities=20% Similarity=0.181 Sum_probs=132.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc----eeEEEeecCC--CCCCC-------h------------------hhhhcCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVK--GEQFS-------P------------------DFLKINPI 50 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~----~~~~~~~~~~--~~~~~-------~------------------~~~~~~p~ 50 (212)
+-||..-.||+++++.+.++.+|++ +..+...... +.... . -|....|.
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 4588889999999999999999986 2222220110 11000 0 01111222
Q ss_pred ----cccceEeeC---CeeeeeHHHHHHHHHH---hC------CCCCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHH
Q 028170 51 ----GYVPALVDG---DFVVSDSFAILMYLEE---KY------PQPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVK 114 (212)
Q Consensus 51 ----~~~P~l~~~---~~~~~es~~I~~yl~~---~~------~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (212)
.+||||-|- ..+-.||..|++.+.. .+ +.-.|+| +..+++++.+.+|+.+.+..-+ ++
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~wvy~~INNGV----Yk 191 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSWVYDKINNGV----YK 191 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhceecccccCce----ee
Confidence 379999964 3566899999999993 22 2234777 6678999999999887664422 11
Q ss_pred HhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcc----cC----CCCcchHH
Q 028170 115 YIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFN----LD----MTQFPLLL 186 (212)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~----~~----~~~~p~l~ 186 (212)
. +-...++.-+..-..+-+.|+.+|+.|+++-+.|++|+++|-||+.+++.+.++...+. .. .++||+|.
T Consensus 192 ~--GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~ 269 (319)
T KOG2903|consen 192 C--GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLH 269 (319)
T ss_pred e--ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHH
Confidence 0 00113455555666788889999999998544599999999999999999877632222 11 36999999
Q ss_pred HHHHHHhC-CcchhhhCC
Q 028170 187 RLHEAYSK-LPAFQNAVP 203 (212)
Q Consensus 187 ~~~~~~~~-~p~~~~~~~ 203 (212)
.|.+++.+ .|+++.+..
T Consensus 270 ~~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 270 NWLKNIYWNIPGFSSTTD 287 (319)
T ss_pred HHHHHHHhhccchhhccc
Confidence 99999998 899988753
No 84
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.54 E-value=1.3e-13 Score=92.82 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhc-cCCCcccCCCchHHHHhh
Q 028170 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKD-YAGKYATGDEVFLADLYL 164 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~G~~~t~aD~~~ 164 (212)
|+.+++.+++++.+. +.+ ....+...+.+. + ...+...++.||+.|++ .+++|++| ++|+|||++
T Consensus 1 d~~~ra~~~~~~~~~-~~~---~~~~~~~~~~~~---~------~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l 66 (120)
T cd03203 1 DPAKREFADELLAYT-DAF---TKALYSSLIKGD---P------SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAY 66 (120)
T ss_pred CHHHHHHHHHHHHHH-HHH---HHHHHHHHhcCC---c------hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHH
Confidence 467899999999982 111 112223333222 1 12346678888888873 13799999 999999999
Q ss_pred HHHHHHHHH----hcccCC-CCcchHHHHHHHHhCCcchhhhCCCC
Q 028170 165 APQLYAAVN----RFNLDM-TQFPLLLRLHEAYSKLPAFQNAVPEK 205 (212)
Q Consensus 165 ~~~l~~~~~----~~~~~~-~~~p~l~~~~~~~~~~p~~~~~~~~~ 205 (212)
++.+.++.. ..+.++ +.+|+|.+|+++|.++|+++++.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~ 112 (120)
T cd03203 67 VPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAYTQTKQDP 112 (120)
T ss_pred HHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHHHhHcCCH
Confidence 999876521 234554 68999999999999999999997753
No 85
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.54 E-value=6.5e-14 Score=90.35 Aligned_cols=72 Identities=32% Similarity=0.424 Sum_probs=63.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCC--CCcchHHHHHHHHhCCc
Q 028170 122 ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDM--TQFPLLLRLHEAYSKLP 196 (212)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~--~~~p~l~~~~~~~~~~p 196 (212)
.++..+.....+.+.|+.+|+.|.+ ++|++|+++|+||+++++.+.++ ...+... +++|+|.+|+++|.++|
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~ADi~~~~~~~~~-~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLKG--GPYLVGDKLTIADIALFPMLDWL-ERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--SSSSSBSS-CHHHHHHHHHHHHH-HHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcC--CCeeeccCCchhHHHHHHHHHHH-HHhCCCcccccCHHHHHHHHHHHcCC
Confidence 4557788888999999999999996 99999999999999999999999 5555554 89999999999999997
No 86
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.54 E-value=4.6e-14 Score=92.00 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=72.4
Q ss_pred HHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHH
Q 028170 94 YQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN 173 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~ 173 (212)
++|+.+..+.+.+............ .+...+.....+.+.|+.+|++|++ ++|++|+++|+||+++++.+.+. .
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~-~ 75 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFG---APLDKETAIARAHRLLRLLEEHLAG--RDWLAGDRPTIADVAVYPYVALA-P 75 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHcc--CCccCCCCCCHHHHHHHHHHHHH-h
Confidence 4567777776654322221111111 1123455677899999999999987 78999999999999999998765 4
Q ss_pred hcccCCCCcchHHHHHHHHhCCcch
Q 028170 174 RFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 174 ~~~~~~~~~p~l~~~~~~~~~~p~~ 198 (212)
..+..+..+|+|.+|++++.++|++
T Consensus 76 ~~~~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 76 EGGVDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred ccCCChhhCcHHHHHHHHHHhCcCC
Confidence 4455568899999999999999975
No 87
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.6e-12 Score=91.67 Aligned_cols=174 Identities=18% Similarity=0.197 Sum_probs=130.0
Q ss_pred CCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhCCCCCCCCC-CH
Q 028170 9 RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKYPQPPLLPS-DL 87 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~~~~~l~p~-~~ 87 (212)
....|..|..+|.+.++||.++..+ +.++ .+|.|++|.|..|.+.++|-.+|..+...+.- .|... +.
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~--~l~s~lsE 101 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGV--TLTSWLSE 101 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhcc--chhhhhhh
Confidence 3567999999999999999998877 3444 57899999999999999999999999999852 23222 34
Q ss_pred HHHHHHHHHHHHHHcccchh--------------------------hHHHHH---------HHhhhhcCcchHHHHHHHH
Q 028170 88 KRKAINYQAANIVSSSIQPL--------------------------QNLAVV---------KYIEEKAGADERDIWAKTH 132 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~---------~~~~~~~~~~~~~~~~~~~ 132 (212)
.+++.++..++.+++.+... --..+. +.++....++...+...+.
T Consensus 102 ~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~ 181 (257)
T KOG3027|consen 102 DQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQ 181 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHH
Confidence 56777777777777654211 000001 1112222345667788889
Q ss_pred HHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHH-hccc-----CCCCcchHHHHHHHHhCC
Q 028170 133 IGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN-RFNL-----DMTQFPLLLRLHEAYSKL 195 (212)
Q Consensus 133 ~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~-~~~~-----~~~~~p~l~~~~~~~~~~ 195 (212)
+..+++.|+..|+. .+|+.|++||-+|..+|+.++.++. .++- -+.+|++|.++.+|+++.
T Consensus 182 vdkc~~aLsa~L~~--q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 182 VDKCCRALSAQLGS--QPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHHHhcC--CCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999997 8999999999999999999988731 2221 158899999999999873
No 88
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=1.4e-13 Score=91.82 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCC
Q 028170 125 RDIWAKTHIGKGFAALEKLLKDY-AGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVP 203 (212)
Q Consensus 125 ~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 203 (212)
..+...+.+.+.++.+|.+|... +++|++|+ +|+||+++++++.+. ...+.+.. |+|++|++++.++|++++++.
T Consensus 38 ~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~-~~~~~~~~--P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 38 LSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRF-RTYGLPLS--PAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHHh
Confidence 34455566667777777777532 47899999 999999999999988 55555433 999999999999999999864
No 89
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.49 E-value=9.5e-14 Score=91.24 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHH-HHh-hhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVV-KYI-EEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAP 166 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~ 166 (212)
+++++++|+.+..+.+.+.+..... ..+ .....+++..+...+++.+.++.+|+.|++ ++|++|+++|+||+++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~g~~~slaDi~~~~ 79 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAG--RDFLVGDALTIADIALAA 79 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CccccCCCCCHHHHHHHH
Confidence 5789999999988877765432211 111 122234566778889999999999999976 789999999999999999
Q ss_pred HHHHHHHhcccCCCCcchHHHHHHHHh
Q 028170 167 QLYAAVNRFNLDMTQFPLLLRLHEAYS 193 (212)
Q Consensus 167 ~l~~~~~~~~~~~~~~p~l~~~~~~~~ 193 (212)
.+.++ ...+.+...+|+|.+|++++.
T Consensus 80 ~~~~~-~~~~~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 80 YTHVA-DEGGFDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHhc-cccCCChHhCccHHHHHHhhC
Confidence 99987 555666678999999999874
No 90
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.48 E-value=3.1e-13 Score=88.81 Aligned_cols=76 Identities=20% Similarity=0.122 Sum_probs=63.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccC--------CCcccCCCchHHHHhhHHHHHHHHHhcccCC-----CCcchHHHH
Q 028170 122 ADERDIWAKTHIGKGFAALEKLLKDYA--------GKYATGDEVFLADLYLAPQLYAAVNRFNLDM-----TQFPLLLRL 188 (212)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~le~~L~~~~--------~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~-----~~~p~l~~~ 188 (212)
+.+..+....++...|+.+|++|.++. ++|++|+++|+|||++++.+.++ ...+.+. ..+|+|.+|
T Consensus 23 ~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~-~~~~~~~~~~~~~~~P~l~~w 101 (111)
T cd03204 23 NVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRL-KFLGLSRRYWGNGKRPNLEAY 101 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHH-HHcCccccccccccChHHHHH
Confidence 445677788899999999999998621 25999999999999999999988 5445443 579999999
Q ss_pred HHHHhCCcch
Q 028170 189 HEAYSKLPAF 198 (212)
Q Consensus 189 ~~~~~~~p~~ 198 (212)
++||.+||+|
T Consensus 102 ~~rv~aRpsf 111 (111)
T cd03204 102 FERVLQRESF 111 (111)
T ss_pred HHHHHcCCCC
Confidence 9999999975
No 91
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.43 E-value=3.3e-13 Score=87.76 Aligned_cols=70 Identities=24% Similarity=0.410 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCC-CCcchHHHHHHHHhC
Q 028170 122 ADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDM-TQFPLLLRLHEAYSK 194 (212)
Q Consensus 122 ~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~-~~~p~l~~~~~~~~~ 194 (212)
.+...+...+++...+..+|++|+.++++|++|++||+||+++++.+..+ . .. .+ +.+|+|.+|++||.+
T Consensus 29 ~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~-~-~~-~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 29 DEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASL-R-WA-DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHH-H-CC-HHTTTCHHHHHHHHHHHT
T ss_pred hhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHH-h-hc-ccccccHHHHHHHHhhcC
Confidence 34567778888999999999999985445999999999999999999776 3 23 33 599999999999975
No 92
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.42 E-value=2.2e-12 Score=86.79 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhc----ccC-CCCcchHHHHHHHHhCCcchhhh
Q 028170 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF----NLD-MTQFPLLLRLHEAYSKLPAFQNA 201 (212)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~----~~~-~~~~p~l~~~~~~~~~~p~~~~~ 201 (212)
+...+.+.+.|..||+.|++ +++|++|+++|+||+++++.+.++.... +.. .+.+|+|.+|++++.+||+|+++
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~-~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t 107 (121)
T cd03201 29 DGTEQALLDELEALEDHLKE-NGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKT 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhc
Confidence 33556788999999999984 2699999999999999999887662211 222 37899999999999999999998
Q ss_pred CCCC
Q 028170 202 VPEK 205 (212)
Q Consensus 202 ~~~~ 205 (212)
++.+
T Consensus 108 ~~~~ 111 (121)
T cd03201 108 KAEK 111 (121)
T ss_pred CCCH
Confidence 7754
No 93
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.40 E-value=2.1e-12 Score=78.17 Aligned_cols=65 Identities=31% Similarity=0.399 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccC---CCCcchHHHHHHH
Q 028170 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD---MTQFPLLLRLHEA 191 (212)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~---~~~~p~l~~~~~~ 191 (212)
...+...+.+.+.|+.||++|+. ++|++|+++|+||+++++.+.++ ...+.. .+.+|+|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~le~~L~~--~~fl~G~~~s~aD~~l~~~l~~~-~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 2 AAVERARAQLEAALDALEDHLAD--GPFLFGDRPSLADIALAPFLWRL-RFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--SSBTTBSS--HHHHHHHHHHHHH-HHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCCCCCCCCHHHHHHHHHHHHH-HHhCcCcCccccCHHHHHHHhC
Confidence 35667788899999999999998 77999999999999999999998 555543 4899999999987
No 94
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.38 E-value=3.3e-12 Score=83.77 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHH
Q 028170 89 RKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQL 168 (212)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l 168 (212)
++++++++++...+.........+.. . +....++......+.+.+.+..+|++|.+.+++|++|+++|+||+++++.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~ 79 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEK-D-GEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVL 79 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC-c-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHH
Confidence 46788888888766554433322211 0 011135667778888999999999999753468999999999999999999
Q ss_pred HHHHHhccc-C-CCCcchHHHHHHHH
Q 028170 169 YAAVNRFNL-D-MTQFPLLLRLHEAY 192 (212)
Q Consensus 169 ~~~~~~~~~-~-~~~~p~l~~~~~~~ 192 (212)
.++ ...+. . ...+|+|++|++++
T Consensus 80 ~~~-~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 80 DYL-LYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHH-HhhCchhhHHhChhHHHHHHhC
Confidence 988 44443 3 67899999999975
No 95
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.36 E-value=3.3e-12 Score=77.34 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=50.1
Q ss_pred CCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHh
Q 028170 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~ 76 (212)
+.+++|.+++++|++.|+||+.+... . . ...+|.|+||+|++||.+++||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~-----~--~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N-----A--EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C-----c--cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 56889999999999999999988432 1 1 12567799999999999999999999999864
No 96
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.33 E-value=4.5e-12 Score=82.20 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=69.2
Q ss_pred HHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHH
Q 028170 94 YQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN 173 (212)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~ 173 (212)
+.|+.++.+.+.+.+..............++..+...+.+.+.++.||++|++ ++|++|+++|+||+++++.+.++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~g~~~t~aDi~~~~~l~~~-~ 78 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAG--RPYLAGDRFSLADIALAPVLARL-D 78 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCCcCHHHHHHHHHHHHH-H
Confidence 45666666655443322221111110123566777888899999999999987 79999999999999999999998 4
Q ss_pred hcccC---CCCcchHHHHHHHH
Q 028170 174 RFNLD---MTQFPLLLRLHEAY 192 (212)
Q Consensus 174 ~~~~~---~~~~p~l~~~~~~~ 192 (212)
..+.. .+.+|+|.+|++++
T Consensus 79 ~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 79 LLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HhhhhhhhhccCccHHHHHHhC
Confidence 44444 57899999999875
No 97
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.27 E-value=2.4e-11 Score=82.17 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhc-ccC-CCCcchHHHHHHHHhCC
Q 028170 126 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF-NLD-MTQFPLLLRLHEAYSKL 195 (212)
Q Consensus 126 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~-~~~-~~~~p~l~~~~~~~~~~ 195 (212)
.+...+.+...|+.+|++|++ ++|+.|+++|+||+++++.+.+. ... +.+ ++.+|+|.+|++||.+.
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl~Gd~~t~AD~~l~~~l~~~-~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFLGGAAPNYADYIVFGGFQWA-RIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCccCCCCCchhHHHHHHHHHHH-HHcCcccccccCChHHHHHHHHhcC
Confidence 456777899999999999987 89999999999999999999988 443 555 47899999999999863
No 98
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.9e-09 Score=81.22 Aligned_cols=172 Identities=21% Similarity=0.214 Sum_probs=123.1
Q ss_pred CchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe-eCCeeeeeHHHHHHHHHHhCCCCCCCCC-CH
Q 028170 10 SSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV-DGDFVVSDSFAILMYLEEKYPQPPLLPS-DL 87 (212)
Q Consensus 10 s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~-~~~~~~~es~~I~~yl~~~~~~~~l~p~-~~ 87 (212)
++-|..+.+.+..++-|.+++... +++ ..|.|++|+|+ ++|+.+++-..|..+|.....+-.+.+. ..
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ss-------N~~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~ 86 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSS-------NPW---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSA 86 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeec-------CCC---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHH
Confidence 778999999999999665555544 112 45678999999 6789999999999999984322234333 25
Q ss_pred HHHHHHHHHHHHHHcccchhhHHHHH-----------HHh------------------------hhhcC-cchHHHHHHH
Q 028170 88 KRKAINYQAANIVSSSIQPLQNLAVV-----------KYI------------------------EEKAG-ADERDIWAKT 131 (212)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~------------------------~~~~~-~~~~~~~~~~ 131 (212)
.+.+....+++++...+.+.+...+. +.+ ....+ ..+....+..
T Consensus 87 kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~ 166 (313)
T KOG3028|consen 87 KQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYK 166 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHH
Confidence 67788889999888876654322110 000 00001 1234556666
Q ss_pred HHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccC-------CCCcchHHHHHHHHhC
Q 028170 132 HIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLD-------MTQFPLLLRLHEAYSK 194 (212)
Q Consensus 132 ~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~-------~~~~p~l~~~~~~~~~ 194 (212)
...+++..|.+.|++ .+|++|+++|--|+.+++.+..+ ...... +..++||.++.+++..
T Consensus 167 ~Aska~~~LS~~Lgs--~kffFgd~psslDa~lfs~la~~-~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 167 DASKALNLLSTLLGS--KKFFFGDKPSSLDALLFSYLAIL-LQVALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHhcC--ceEeeCCCCchHHHHHHHHHHHH-HhccCCchhHHHHHHhcchHHHHHHHHHH
Confidence 778899999999998 89999999999999999999885 333322 3458999999999987
No 99
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.17 E-value=2e-10 Score=74.43 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=66.0
Q ss_pred HHHHHHcccchhhHHHHHHH-hhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHh
Q 028170 96 AANIVSSSIQPLQNLAVVKY-IEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR 174 (212)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~ 174 (212)
|.....+.+...+...+... .......++..+....++.+.|+.+|++|++ ++| +++|+||+++++.+.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~---d~~TlADi~l~~~l~~~~~~ 78 (98)
T cd03205 4 LEALADGILDAAVAIVYERRLRPEEKRSQPWLERQRGKIERALDALEAELAK--LPL---DPLDLADIAVACALGYLDFR 78 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHhhhChHHHHHHHHHHHHHHHHHHHhhhh--CCC---CCCCHHHHHHHHHHHHHHhH
Confidence 44444444444443333322 2233446678888999999999999999987 788 88999999999999888322
Q ss_pred -cccC-CCCcchHHHHHHHH
Q 028170 175 -FNLD-MTQFPLLLRLHEAY 192 (212)
Q Consensus 175 -~~~~-~~~~p~l~~~~~~~ 192 (212)
.+.. .+.+|+|.+|+++|
T Consensus 79 ~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 79 HPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred ccCcchhhhChHHHHHHHhC
Confidence 2333 47899999999986
No 100
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.17 E-value=1.7e-10 Score=73.21 Aligned_cols=63 Identities=24% Similarity=0.204 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhccc-------CCCCcchHHHHHHHHh
Q 028170 128 WAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNL-------DMTQFPLLLRLHEAYS 193 (212)
Q Consensus 128 ~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~-------~~~~~p~l~~~~~~~~ 193 (212)
...+.+.+.++.+|+.|++ ++|++|+++|+|||++++.+.++ ...+. .++.+|+|++|++|+.
T Consensus 19 ~~~~~~~~~l~~le~~L~~--~~yl~Gd~~t~aDi~l~~~l~~~-~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGD--KKFFFGDKPTSLDATVFGHLASI-LYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCccCCCCCCHHHHHHHHHHHHH-HhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 5667888999999999997 79999999999999999999887 33221 2468999999999974
No 101
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=99.17 E-value=4.6e-10 Score=72.39 Aligned_cols=113 Identities=21% Similarity=0.134 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhH
Q 028170 86 DLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLA 165 (212)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~ 165 (212)
|..++++.+++..|+.+.+.++.........-.......--+.....+.+.+...+.+|.. +++||+|+ .|+||..++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFGe-wsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFGE-WSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCcccc-chHHHHHHH
Confidence 4678999999999999988776543332221111112223344556667788888888876 68999997 999999999
Q ss_pred HHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhhhCC
Q 028170 166 PQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQNAVP 203 (212)
Q Consensus 166 ~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 203 (212)
.++.++ ..+|..++ +.+..|.++.-++|++++.+.
T Consensus 79 ~ml~Rl-~~~gd~vP--~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 79 LMLNRL-VTYGDPVP--ERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHH-HTTT------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHH-HHcCCCCC--HHHHHHHHHHHCCHHHHHHHH
Confidence 999999 77776654 689999999999999998753
No 102
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.11 E-value=2.5e-10 Score=70.86 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=60.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
.++||+.+.||+|.+++.+|+..|++|+.+.++-. ....++...++..++|++..||..+.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 37899999999999999999999999999887632 122445566778899999999999999999999984
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.04 E-value=1.1e-09 Score=66.67 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=49.5
Q ss_pred CchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHh
Q 028170 10 SSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEK 76 (212)
Q Consensus 10 s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~ 76 (212)
||+|.++...|..+|++|+.+... + -...|.|++|+|+++|+.+.+|..|++||.++
T Consensus 16 sp~clk~~~~Lr~~~~~~~v~~~~-------n---~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 16 DPECLAVLAYLKFAGAPLKVVPSN-------N---PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CHHHHHHHHHHHcCCCCEEEEecC-------C---CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 799999999999999999887544 1 12457899999999999999999999999875
No 104
>PRK10638 glutaredoxin 3; Provisional
Probab=99.02 E-value=9.6e-10 Score=68.92 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=60.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
+++|..+.||+|++++.+|+..|++|+.+.++.. .....++.+.++..++|++..||..+.+...+..+-.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~--~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGD--AAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 8999999999999999999999999999888732 1234567788899999999999999999988877643
No 105
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.01 E-value=1.4e-09 Score=73.73 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHh-c---cc--CCCCcchHHHHHHHHh
Q 028170 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR-F---NL--DMTQFPLLLRLHEAYS 193 (212)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~-~---~~--~~~~~p~l~~~~~~~~ 193 (212)
...+.......+.|+.|+..|++ ++|++|++||.+|+++++.+..+... . +. .+..+|+|.+|++||.
T Consensus 53 ~~~ee~~~~~~~~l~aLs~~Lg~--~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 53 KTLDQVIEEVDQCCQALSQRLGT--QPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 34566777788999999999998 89999999999999999998887322 1 11 1578999999999984
No 106
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.97 E-value=2.9e-09 Score=73.02 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhc-cc-CCCCcchHHHHHHHHhC
Q 028170 131 THIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRF-NL-DMTQFPLLLRLHEAYSK 194 (212)
Q Consensus 131 ~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~-~~-~~~~~p~l~~~~~~~~~ 194 (212)
+.+...++.+-+.+.. +++|+.|++||+||+++++.+..+ ... ++ ++..+|++.+|++||.+
T Consensus 82 ~~L~~a~~~w~~~~~~-~~~FlaGd~ptIADisvyg~l~s~-e~~~~~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 82 EWLYDALNTWVAALGK-DRQFHGGSKPNLADLAVYGVLRSV-EGHPAFKDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHhcC-CCCccCCCCCCHHHHHHHHHHHHH-HHhccccchhhCcCHHHHHHHHHH
Confidence 3344444444444544 278999999999999999999888 555 66 78899999999999986
No 107
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.97 E-value=2.7e-09 Score=64.97 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=59.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
+++||..+.||+|.+++-+|...|++|+.+.++-.. ....+.......++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 478999999999999999999999999998887321 22344455667899999999999999999999984
No 108
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.97 E-value=2.5e-09 Score=73.40 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHH-hcc-----cCCCCcchHHHHHHHHhC
Q 028170 124 ERDIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVN-RFN-----LDMTQFPLLLRLHEAYSK 194 (212)
Q Consensus 124 ~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~-~~~-----~~~~~~p~l~~~~~~~~~ 194 (212)
...+...+...+.++.|++.|++ ++|++|+++|.+|+++++.+..+.. ..+ ..+..+|+|.+|++||.+
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~--~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGE--SQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCC--CCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 34566777888999999999998 8999999999999999999887732 222 125789999999999985
No 109
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.88 E-value=6.3e-09 Score=63.42 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=55.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeee--eeHHHHHHHH
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV--SDSFAILMYL 73 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~--~es~~I~~yl 73 (212)
|++||+...||+|++++.+|...+++|..+.++- ......++.+.++...+|+++.+|..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~--~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEK--DSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccC--CHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 8999999999999999999999999998876662 212234566778889999999888777 5566666654
No 110
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.80 E-value=1.4e-08 Score=62.03 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=57.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~ 71 (212)
++||+.+.||+|++++.+|+..||+|+.+.+.- ......++.+.++..++|++..||..+.+.....+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~--~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDI--FPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCC--CHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 589999999999999999999999999987772 22344577888888999999999999887766554
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.65 E-value=7.9e-08 Score=58.08 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=57.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~y 72 (212)
+++|+.+.||+|++++.+|...+++|+.+.+.. ......++...++..++|++..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~--~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILE--DGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCC--CHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 579999999999999999999999998777762 222345666778889999999999999999888764
No 112
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.63 E-value=7.5e-08 Score=59.83 Aligned_cols=61 Identities=15% Similarity=0.347 Sum_probs=47.2
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~ 64 (212)
+++||..+.||+|.+++-+|...||+|+.+.++-. +....++ ..++..++|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~--~~~~~~~-~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV--PEAAETL-RAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC--HHHHHHH-HHcCCCCcCEEEECCEEEe
Confidence 47899999999999999999999999999988821 1111123 3457889999997776554
No 113
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.3e-07 Score=58.65 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=56.1
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHH
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl 73 (212)
++++|..+.||+|.+++-+|+..|++|+.+.++....+.........++..++|++..||..+.....+-++.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHH
Confidence 3789999999999999999999999999999995432222233444558899999999988777655554443
No 114
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.60 E-value=8.6e-08 Score=58.17 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=51.0
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~e 65 (212)
+++|+...||+|.+++.+|...+++|..+.++.. .....++.+.+|.+.+|++..+|..+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEec
Confidence 6899999999999999999999999998887632 2233567778899999999988776654
No 115
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.52 E-value=3.1e-07 Score=56.19 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=55.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCc-ccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~-~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
++||+.+.||+|.+++-+|+..|++|+.+.++.. .....++....... ++|++..+|..+.+...+.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 5899999999999999999999999999888732 11223343444444 89999999999999988887643
No 116
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.46 E-value=2.7e-07 Score=56.73 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=52.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcC-CCcccceEe-eCCeeeeeH--HHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALV-DGDFVVSDS--FAILMYL 73 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p~~~~P~l~-~~~~~~~es--~~I~~yl 73 (212)
++||+...||+|++++..|...+++|+.+.++ ........+...| +...+|+++ ++|..+.++ ..|+.+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~--~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIE--EDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCc--CCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 68999999999999999999999999876665 2222334555666 889999997 677776654 3444444
No 117
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.45 E-value=5.3e-07 Score=55.83 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=58.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~ 75 (212)
+++|+.+.||+|.+++-+|+..|++|+.+.++.. +....++...+....+|++..+|..+.+...+..+..+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~--~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGD--PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCC--HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 5799999999999999999999999999988732 12234555566678999999999999988888776544
No 118
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.43 E-value=1.1e-06 Score=55.30 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=59.8
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCCceeEEEeecCCCCCCChhhhhcCC--CcccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINP--IGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p--~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
+++|+.+.||+|.+++-+|.. .+++|+.+.++-.. ....++..... ..++|++..||..+.+...|..++.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence 689999999999999999999 89999988887321 11223443332 2689999999999999999999998
Q ss_pred HhCC
Q 028170 75 EKYP 78 (212)
Q Consensus 75 ~~~~ 78 (212)
..++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 8764
No 119
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.37 E-value=8.1e-07 Score=53.95 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=43.6
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCe
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~ 61 (212)
+++|+.+.||+|++++-+|+..|++|+.+.++-. .....++. ..+...+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~--~~~~~~~~-~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQ--PEAIDYVK-AQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCC--HHHHHHHH-HcCCcccCEEEECCC
Confidence 5899999999999999999999999999888721 11222333 346678999996553
No 120
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.34 E-value=2.6e-06 Score=53.59 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=57.1
Q ss_pred eeecccCCCchhHHHHHHHHHcC-----CceeEEEeecCCCCCCChhhhhcCCC--cccceEeeCCeeeeeHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKG-----LEYEYKAVNLVKGEQFSPDFLKINPI--GYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~p~--~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
+++|+.+.||+|.+++-+|...+ ++|+.+.++-. .....++...... .++|++..||..+.++..|..++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~--~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE--GISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC--HHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 55666666521 1112334444333 689999999999999999999998
Q ss_pred HhCC
Q 028170 75 EKYP 78 (212)
Q Consensus 75 ~~~~ 78 (212)
++++
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8764
No 121
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.33 E-value=4.7e-07 Score=52.89 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=48.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~ 63 (212)
+++|+.+.||+|.+++-+|...|++|+.+.++... ....++.+.+...++|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999998431 2334555555778999999888754
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.29 E-value=2.7e-06 Score=52.90 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=59.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCC-CCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG-EQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~ 75 (212)
+++|+...||+|.+++-+|...+++|+...++.... ......+.+.+...++|++..+|..+.++..|.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 578999999999999999999999999999885432 11122344566677999999999999999999887654
No 123
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.19 E-value=4.5e-06 Score=53.94 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=55.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCC-CCChhhhhcCCCcccceEeeCCeeeeeHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~y 72 (212)
+++|..+.||+|.+++-+|...|++|+.+.++-.... .....+...+...++|++..+|..+.+...+...
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 6799999999999999999999999999888832110 0112344556778999999999999988877764
No 124
>PHA03050 glutaredoxin; Provisional
Probab=98.10 E-value=9.8e-06 Score=53.16 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=55.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---ceeEEEeecCC-CCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVK-GEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i---~~~~~~~~~~~-~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~ 71 (212)
+++|..+.||||.+++-+|...++ +|+.+.++-.. +.....++.+.+...+||++..+|..+.+...+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 578999999999999999999999 78888887321 11123456677777899999999999988877766
No 125
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.08 E-value=2e-05 Score=47.55 Aligned_cols=55 Identities=31% Similarity=0.409 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHcCCc---eeEEEeecCCCCCCChhhhhcCCCcccceEee-CCeeeeeHHHHHHHH
Q 028170 9 RSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVD-GDFVVSDSFAILMYL 73 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~-~~~~~~es~~I~~yl 73 (212)
.+|.|.++...|...+.+ |+++..+ ++ ..+|.+++|+|.+ +++.+++-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-------n~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-------NP---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-------CC---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 488999999999999999 7666666 22 2678999999998 999999999999998
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.04 E-value=1.7e-05 Score=49.48 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=57.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc--eeEEEeecCCCC-CCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLE--YEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEE 75 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~--~~~~~~~~~~~~-~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~ 75 (212)
+++|+.+.||+|.+++-+|...+++ |+...++..... .....+.+.+...++|++..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4689999999999999999999999 888888743211 1112344556677899999999999999888887654
No 127
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.93 E-value=3.5e-05 Score=49.58 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred CCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHH
Q 028170 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl 73 (212)
+.||+|.+++-+|...|++|+.+.+. .......++.+.+...++|.+..||..+.+...+....
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~~~~di~--~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPFAYVNVL--EDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEECC--CCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 78999999999999999999987775 22222344556666779999999999998888777643
No 128
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.90 E-value=7.4e-05 Score=50.53 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcch
Q 028170 126 DIWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 126 ~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 198 (212)
-+....++...|..||.++.. .....| ++|+-||.+|+.|..+...-|..++ |++++|+++|.+.-.+
T Consensus 57 t~~~i~~l~~~L~~Le~ll~~--~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~P--~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEELEPLLAS--PNAVNG-ELSIDDIILFPILRSLTIVKGIQWP--PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC--TTBTTS-S--HHHHHHHHHHHHHCTCTTS-----HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHhcc--ccccCC-CCCHHHHHHHHHHhhhhhccCCcCC--HHHHHHHHHHHHHcCC
Confidence 345667788888888888885 344444 8999999999999988333334333 7999999999986544
No 129
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.84 E-value=5.8e-05 Score=50.58 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcch
Q 028170 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAF 198 (212)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 198 (212)
.....++...|..++.++.. .. .++..+|+-||.+|+.|..+...-|..++ |++.+|+++|.+.-+|
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~--~~-~~n~~ls~DDi~lFp~LR~Lt~vkgi~~P--~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILS--SE-AVNGQLSTDDIILFPILRNLTLVKGLVFP--PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcC--cc-ccCCcCCHHHHHHHHHHhhhhhhcCCCCC--HHHHHHHHHHHHHhCC
Confidence 35667788889999999854 23 34567999999999999988554455444 7999999999986554
No 130
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.82 E-value=7.4e-05 Score=47.39 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=51.3
Q ss_pred CCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHH
Q 028170 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl 73 (212)
+.||+|.+++-+|...|++|+.+.+.- ......++.+.+...++|++..+|..+.+...+....
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y~~idv~~--~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDFGTFDILE--DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEcCC--CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 589999999999999999999998862 2222345556666779999999999999888887744
No 131
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=7.2e-05 Score=61.01 Aligned_cols=106 Identities=13% Similarity=0.152 Sum_probs=74.9
Q ss_pred eCCeeeeeHHHHHHHHHHhCC-CCCCCCCCHHHHHHHHHHHHHHHcccchhhHHHHHHHhhhhcCcchHHHHHHHHHHHH
Q 028170 58 DGDFVVSDSFAILMYLEEKYP-QPPLLPSDLKRKAINYQAANIVSSSIQPLQNLAVVKYIEEKAGADERDIWAKTHIGKG 136 (212)
Q Consensus 58 ~~~~~~~es~~I~~yl~~~~~-~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (212)
.++..+.++..+..|.+.... .+.+++.+ .++.+++.|+++... .....+...
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~-------------------------~~~~~~s~~ 96 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST-------------------------FSFDEISSS 96 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh-------------------------cchHHHHHH
Confidence 456677777777777664433 23477776 789999999999864 011446677
Q ss_pred HHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhccc-C-CCCcchHHHHHHH
Q 028170 137 FAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNL-D-MTQFPLLLRLHEA 191 (212)
Q Consensus 137 l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~-~-~~~~p~l~~~~~~ 191 (212)
+..++..|.- ..||+|.++|+||+++|+++..--...+. . -..+-++.+|++-
T Consensus 97 ~~~ld~~l~~--~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~ 151 (712)
T KOG1147|consen 97 LSELDKFLVL--RTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDL 151 (712)
T ss_pred HHHHHhhhhH--HHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCc
Confidence 8889999987 89999999999999999998752011111 1 2355678888883
No 132
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.33 E-value=0.00071 Score=46.84 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=53.5
Q ss_pred eeecccC------CCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCC----CcccceEeeCCeeeeeHHHHHH
Q 028170 2 LKLFSYW------RSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~Ly~~~------~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p----~~~~P~l~~~~~~~~es~~I~~ 71 (212)
++||... .+|+|.+++-+|+..+|+|+.+.+++. .....++.+... ..++|.+..+|..|.+...+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~--~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD--SGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 5788877 799999999999999999999888742 122334444433 3689999999999998888777
Q ss_pred H
Q 028170 72 Y 72 (212)
Q Consensus 72 y 72 (212)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 4
No 133
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.33 E-value=0.00029 Score=46.81 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=31.6
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|+.|++++-.|+..|++|+.+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 899999999999999999999999999988876
No 134
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.29 E-value=0.00031 Score=47.80 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=31.7
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|++|++++-.|...||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 899999999999999999999999999999886
No 135
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.24 E-value=0.00077 Score=54.89 Aligned_cols=67 Identities=9% Similarity=0.215 Sum_probs=51.8
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhh---------hcCCCcccceEeeCCeeeeeHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFL---------KINPIGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~p~~~~P~l~~~~~~~~es~~I~~ 71 (212)
+++|..+.||+|.+++-+|...||+|+.+.++ +... ..++. ..+...++|++..||..+.+-..+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~--~~~~-~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLD--DDVK-RAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC--CChh-HHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 78999999999999999999999999998887 2111 11211 12456789999999988888777655
No 136
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.19 E-value=0.0015 Score=38.73 Aligned_cols=57 Identities=18% Similarity=0.067 Sum_probs=39.9
Q ss_pred eeecccCCCchhHHHHHHHHHc-----CCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~ 64 (212)
+++|+.+.||+|.+++-.|+.. +++|..+.++ ...+.........+|++..+|..+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 6889999999999999988865 4555554443 2234444444567999997776654
No 137
>PRK10824 glutaredoxin-4; Provisional
Probab=97.17 E-value=0.0015 Score=43.23 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=51.0
Q ss_pred CCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHH
Q 028170 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYL 73 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl 73 (212)
+.||||.++.-+|...|++|..+.++- .......+...+...++|.+-.+|..|.++..+....
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~--d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQ--NPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecC--CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 479999999999999999999877762 2223345566677789999999999999988777743
No 138
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.15 E-value=0.00057 Score=46.53 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=31.9
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|+.|++++-.|...||+|+.+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 899999999999999999999999999999887
No 139
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.11 E-value=0.00077 Score=45.85 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=31.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 899999999999999999999999999999887
No 140
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0012 Score=43.89 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=31.3
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|.-|++++-.|+..||+|+.+.+.
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 799999999999999999999999999988776
No 141
>PRK10853 putative reductase; Provisional
Probab=96.85 E-value=0.0015 Score=43.59 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=31.4
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 899999999999999999999999999988776
No 142
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.79 E-value=0.0015 Score=43.12 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=30.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
++||+.+.|++|++++-.|+..|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 58999999999999999999999999999887
No 143
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0077 Score=39.05 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=55.8
Q ss_pred eecccCCCchhHHHHHHHHHcCCceeEEEeecCCCC-CCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGE-QFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
.+|.-..||+|.+++-+|...++++.++.+|-.... +-...+.+.....++|.+..+|..+.+...+..+-.
T Consensus 17 VifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 17 VIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred EEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 456678899999999999999999999999954311 112234455666799999999999999988887643
No 144
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.67 E-value=0.0023 Score=41.71 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=30.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.|++|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999998887
No 145
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.54 E-value=0.01 Score=37.68 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=50.8
Q ss_pred eeecccCCCc------hhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCC----CcccceEeeCCeeeeeHHHHHH
Q 028170 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINP----IGYVPALVDGDFVVSDSFAILM 71 (212)
Q Consensus 2 ~~Ly~~~~s~------~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p----~~~~P~l~~~~~~~~es~~I~~ 71 (212)
+++|+...++ .|+.++.+|..++|+|+.+.++.. +....++.+..+ ...+|.+..++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d--~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN--EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC--HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6788776665 577899999999999999999853 223345444433 4789999999999988866665
No 146
>PTZ00062 glutaredoxin; Provisional
Probab=96.48 E-value=0.0077 Score=44.15 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=49.3
Q ss_pred CCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHH
Q 028170 8 WRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 8 ~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~y 72 (212)
+.||+|+++.-+|...||+|....+. ..+.....+.+.+...++|.+..+|..+.+...+.+.
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~--~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIF--EDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcC--CCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 57999999999999999999987666 2222334555666677999999999999888777763
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.32 E-value=0.0051 Score=40.99 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=29.9
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.|+.|++++-+|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999988876
No 148
>PRK10026 arsenate reductase; Provisional
Probab=96.25 E-value=0.0056 Score=42.03 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=31.0
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+++|+.+.|.-|++++-.|+..|++|+.+.+-
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 489999999999999999999999999998876
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.11 E-value=0.008 Score=39.19 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=30.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999998887
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.08 E-value=0.0079 Score=39.78 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=30.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
++||+.+.|+.|++++-.|+..|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 68999999999999999999999999998876
No 151
>PHA02125 thioredoxin-like protein
Probab=95.73 E-value=0.037 Score=33.56 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=37.8
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVD 58 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~ 58 (212)
|+.+|+.+.|+.|+.+.-.|+ ++.+....++.. ...+.........+|++..
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTD----EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHH--HHhheEEeeeCC----CCHHHHHHcCCceeCeEEC
Confidence 889999999999999888876 356666666632 2345555555678999983
No 152
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.058 Score=32.25 Aligned_cols=64 Identities=22% Similarity=0.199 Sum_probs=45.5
Q ss_pred CeeecccCCCchhHHHHHHHHHcCCceeEEEeecCC--------CCCCChhhhhc--CCCcccceEe-eCCeeee
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVK--------GEQFSPDFLKI--NPIGYVPALV-DGDFVVS 64 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~--------~~~~~~~~~~~--~p~~~~P~l~-~~~~~~~ 64 (212)
|-+||+...||-|....-.|+-.+++|+.+.+.-.- -.+..++|.+. |.+--+|+|. +||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 468999999999999999999999999998875321 01223444433 3344589888 6776665
No 153
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.28 E-value=0.025 Score=38.13 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=30.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
++||+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 68999999999999999999999999998876
No 154
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.05 E-value=0.032 Score=36.99 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=29.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987766
No 155
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.04 E-value=0.032 Score=36.85 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=29.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987765
No 156
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.02 E-value=0.094 Score=33.02 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=38.4
Q ss_pred eeecccCCCchhHHHHHHHHHc-----CCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVS 64 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~ 64 (212)
+++|..+.|++|..+.-+++.. ++.+..+.++ ..++......-..+|+++.||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 5788889999999988877665 4555555544 2234444455668999997765544
No 157
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.98 E-value=0.14 Score=31.58 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=39.9
Q ss_pred eeecccCCCchhHHHHHHHHHc--CCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK--GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGD 60 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~ 60 (212)
++||+.++|+.|..+.-.|... ..+++...+|+.+ ++++.... ...+|||..+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~----d~~l~~~Y-~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE----DPELFEKY-GYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT----THHHHHHS-CTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC----CHHHHHHh-cCCCCEEEEcC
Confidence 5899999999999999999964 5667888888763 34444433 24899999655
No 158
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.13 Score=32.82 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=48.0
Q ss_pred cCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 7 ~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
++.|+++.++--+|.+.|+ .+...++....+.-+..+.+.+-..+.|-|-.+|..+.+|.-|.+...
T Consensus 27 ~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CCCCCccHHHHHHHHHcCC-cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHH
Confidence 5679999999999999995 444444444333334445555556799999999999999887776543
No 159
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.68 E-value=0.16 Score=30.98 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=38.9
Q ss_pred CeeecccCCCchhHHHHHHHHH----cCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCe
Q 028170 1 MLKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDF 61 (212)
Q Consensus 1 m~~Ly~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~ 61 (212)
++++|+.+.|++|..+.-.++. .+..+....++... ..+.........+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988888764 34446666666432 233344445667999996654
No 160
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.56 E-value=0.24 Score=30.04 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=37.6
Q ss_pred eeecccCCCchhHHH----HHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeee
Q 028170 2 LKLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~v----r~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~ 63 (212)
+.+| .++||.|..+ .-++...+++++...++- .++..+ .....+|++.-||..+
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHH-cCCCcCCEEEECCEEE
Confidence 4455 5999999998 667888888888888871 122222 3467899999776544
No 161
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=93.53 E-value=0.4 Score=34.13 Aligned_cols=38 Identities=24% Similarity=0.148 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhccCC---CcccCCC-chHHHHhhHHHHHHH
Q 028170 132 HIGKGFAALEKLLKDYAG---KYATGDE-VFLADLYLAPQLYAA 171 (212)
Q Consensus 132 ~~~~~l~~le~~L~~~~~---~~l~G~~-~t~aD~~~~~~l~~~ 171 (212)
.-.+++..|++.|+. . .|++|+. +|-+||.+++.|..+
T Consensus 112 ~a~~~l~~L~~~L~~--~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGE--WEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhh--ccccccccCCCCCCHHHHHHHHHHHHH
Confidence 356789999999987 6 8999977 999999999999876
No 162
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=93.52 E-value=0.24 Score=32.31 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHHc---CCceeEEEeecCCCCCCChhhhh-cC-CCcccceEe-eCCe-------------eeeeHHHH
Q 028170 9 RSSCSHRVRIGLNLK---GLEYEYKAVNLVKGEQFSPDFLK-IN-PIGYVPALV-DGDF-------------VVSDSFAI 69 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~-~~-p~~~~P~l~-~~~~-------------~~~es~~I 69 (212)
.||.|..+.-+|... .-..+++.|++.. .+ ....+ +. ....+|+|+ .+|. .|.++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R--PR-~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR--PR-QAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC--ch-HHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 488888888887753 3345666777543 12 22222 22 246799999 5443 68999999
Q ss_pred HHHHHHhCC
Q 028170 70 LMYLEEKYP 78 (212)
Q Consensus 70 ~~yl~~~~~ 78 (212)
++||+++|+
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999997
No 163
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=91.37 E-value=0.67 Score=25.70 Aligned_cols=53 Identities=30% Similarity=0.331 Sum_probs=33.4
Q ss_pred eeecccCCCchhHHHHHHHH-----HcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe
Q 028170 2 LKLFSYWRSSCSHRVRIGLN-----LKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~ 57 (212)
+.+|+...|++|++.+..+. ..++.+..+.++ ..... .......+...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVD--EDPAL-EKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcC--CChHH-hhHHHhCCCccccEEE
Confidence 35677888999999999999 344555444444 21111 1111356678899988
No 164
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.20 E-value=1.1 Score=27.10 Aligned_cols=56 Identities=20% Similarity=0.039 Sum_probs=33.8
Q ss_pred eeecccCCCchhHHHHHH----HHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeee
Q 028170 2 LKLFSYWRSSCSHRVRIG----LNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD 65 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~----l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~e 65 (212)
+++ ..+.||+|..+.-+ +...|+.++.+.+. ..++. .......+|++..||...+.
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 456 45779999966654 44456666444432 12333 45557899999977765443
No 165
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=90.16 E-value=0.72 Score=29.64 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=39.4
Q ss_pred eeecccCCCc------hhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcC---------CCcccceEeeCCeeeeeH
Q 028170 2 LKLFSYWRSS------CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN---------PIGYVPALVDGDFVVSDS 66 (212)
Q Consensus 2 ~~Ly~~~~s~------~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------p~~~~P~l~~~~~~~~es 66 (212)
+++|....++ ..+++..+|+.++|+|+.+.+.. .+....+..+.. +..-.|.+..|+..+.+-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~--~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM--DEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC--CHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 6788766655 46799999999999999887774 222223333322 223456777888777765
Q ss_pred HHHHH
Q 028170 67 FAILM 71 (212)
Q Consensus 67 ~~I~~ 71 (212)
-.+-+
T Consensus 81 e~f~e 85 (99)
T PF04908_consen 81 EDFEE 85 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 166
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=89.49 E-value=1.8 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=13.5
Q ss_pred ccceEe--eCCeeeeeHHHHHHHHHHhCC
Q 028170 52 YVPALV--DGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 52 ~~P~l~--~~~~~~~es~~I~~yl~~~~~ 78 (212)
.-|-|+ .+|..++|+.||+||+..-+.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 347775 568999999999999999874
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=87.98 E-value=0.55 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=22.8
Q ss_pred cccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 5 FSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 5 y~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999987765
No 168
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=83.07 E-value=7 Score=23.54 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=33.3
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCe
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~ 61 (212)
+..|+.+.|+.|+...-.+.. .++.+-.+.++ ....+........+|++. .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD------ENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC------CChhHHHhcCcccccEEEEEECCE
Confidence 456678889999988887776 44444333333 223444444456789877 4555
No 169
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=82.82 E-value=5.4 Score=25.13 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=34.9
Q ss_pred eeecccCCCchhHHHHHHHHHc----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~ 63 (212)
+.+|+.+.|+.|+...-.+... +-.+....++.. ..+++....-...+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 4567789999999887766541 112444555532 233444444456889877 566554
No 170
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=81.98 E-value=6.7 Score=25.72 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=36.9
Q ss_pred eecccCCCchhHHHHHHHHHcCC---ceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeeee
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS 64 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~~ 64 (212)
..|+.+.|+.|+.+.-.++...- ......++.. ...+..+......+|++. .+|..+.
T Consensus 27 V~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 27 CHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 45677899999988766644211 2345556532 334455555667899888 6787665
No 171
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=81.54 E-value=3 Score=26.62 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=32.0
Q ss_pred eeecccCCCchhHHHHHHH--------HHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe
Q 028170 2 LKLFSYWRSSCSHRVRIGL--------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~ 57 (212)
+..|+.+.|++|+...-.+ ...+ .+....++..........+........+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4567788999999876433 1222 45666666432211123444444566799877
No 172
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.30 E-value=3.5 Score=30.60 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=49.6
Q ss_pred cCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHH
Q 028170 7 YWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 7 ~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
.+.|++++++--+|...|++|....|- .++.-+...++.+-..+.|-|-.+|.-+.++.-|...+.
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdIL--~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDVL--TDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEecc--CCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhh
Confidence 466999999999999999998877766 222233344455656799999999999888877766554
No 173
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=78.89 E-value=6 Score=33.95 Aligned_cols=56 Identities=27% Similarity=0.240 Sum_probs=37.5
Q ss_pred eeecccCCCchhHHHHHHHH----Hc-CCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLN----LK-GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVV 63 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~----~~-~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~ 63 (212)
+++|..+.||+|-.+.-+++ +. +|..+.+.+. ..++..+......+|.+..||.++
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~------~~~~~~~~~~v~~vP~~~i~~~~~ 540 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS------HFPDLKDEYGIMSVPAIVVDDQQV 540 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc------ccHHHHHhCCceecCEEEECCEEE
Confidence 57888899999987665443 33 5666666655 234555455578899999776544
No 174
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=76.83 E-value=8.8 Score=25.12 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=31.0
Q ss_pred cccCCCchhHHHHHHHHHcCCc---eeEEEeecCCCCCCChhhhhcCCCcccceEe
Q 028170 5 FSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 5 y~~~~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~ 57 (212)
++.++|++|+.++-+++...-. .+...++.. ..++.........+|++.
T Consensus 29 f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 29 SSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred eCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 3567899999888777654322 234444432 234555555567899888
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=75.45 E-value=3.6 Score=34.89 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=43.5
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc---eeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeee----HHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSD----SFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~e----s~~I~~yl~ 74 (212)
+++|..+.||+|-.+.-+++..-+. .+...++- ...+++........||.+..+|..+.+ -..++..+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLD 195 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 6789999999999877776554332 33333342 233555555557799999976655544 234555555
Q ss_pred H
Q 028170 75 E 75 (212)
Q Consensus 75 ~ 75 (212)
.
T Consensus 196 ~ 196 (517)
T PRK15317 196 T 196 (517)
T ss_pred c
Confidence 4
No 176
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=74.00 E-value=3.3 Score=35.12 Aligned_cols=71 Identities=20% Similarity=0.152 Sum_probs=43.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCc---eeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeH----HHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDS----FAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es----~~I~~yl~ 74 (212)
+++|..+.||+|-.+.-+++..-+. .+...++ . ...++.........||.+..++..+.+. ..+++.+.
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id---~-~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMID---G-ALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLE 196 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE---c-hhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 5788999999999887777665443 2333333 2 2234445555577999999666555442 33444454
Q ss_pred Hh
Q 028170 75 EK 76 (212)
Q Consensus 75 ~~ 76 (212)
+.
T Consensus 197 ~~ 198 (515)
T TIGR03140 197 ET 198 (515)
T ss_pred hc
Confidence 33
No 177
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=72.89 E-value=4.1 Score=30.38 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHhcccCCCCcchHHHHHHHHhCCcchhh
Q 028170 134 GKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNRFNLDMTQFPLLLRLHEAYSKLPAFQN 200 (212)
Q Consensus 134 ~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~ 200 (212)
...++.++..|.+ .+|.-|..++-+|+.++..+.-- -.-..+++..+||..+.+.-.+.+
T Consensus 10 ~~glk~l~~sLA~--ks~~~g~~~s~edv~vf~al~~e-----p~s~~~v~~~~w~~~l~a~~~~~~ 69 (231)
T KOG1668|consen 10 PAGLKKLNKSLAE--KSYIEGYQLSKEDVVVFAALGVE-----PQSARLVNAERWYSKLEALLRLLA 69 (231)
T ss_pred hhhhhhhhHhhhc--ccCCCCCCcccccceeehhcccC-----cchhhhhHHHHHHHHHHHHHHHHh
Confidence 4678899999998 89999999999999998644211 112456788889988887655543
No 178
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=72.09 E-value=21 Score=22.19 Aligned_cols=70 Identities=11% Similarity=0.111 Sum_probs=43.6
Q ss_pred eeecccCCCchhHHHHHHHHHc----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee------eeHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV------SDSFAI 69 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~------~es~~I 69 (212)
+..|+.+.|+.|+...=.+... +-++....++.. ....+........+|++. .+|..+ .+...|
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 4566788999999887544332 215666666643 334555555577899888 666443 245667
Q ss_pred HHHHHH
Q 028170 70 LMYLEE 75 (212)
Q Consensus 70 ~~yl~~ 75 (212)
..+|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777654
No 179
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=68.60 E-value=26 Score=25.90 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=33.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCC---ceeEEEeecCCCCCCChhhhhcCCCcccceEe
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGL---EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~ 57 (212)
+++|+.++|++|..+..+++.... ......++.. ..++.........+|++.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIV 191 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEE
Confidence 456888999999988887775422 2333345532 234444455566899998
No 180
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=68.14 E-value=33 Score=22.84 Aligned_cols=21 Identities=5% Similarity=-0.132 Sum_probs=15.1
Q ss_pred eeecccCCCchhHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL 22 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~ 22 (212)
+..|+.+.||+|+.+.=.|..
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~ 47 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSG 47 (122)
T ss_pred EEEEECCCChhHHHHhHHHHH
Confidence 345688999999986555544
No 181
>PTZ00051 thioredoxin; Provisional
Probab=66.37 E-value=25 Score=21.83 Aligned_cols=58 Identities=12% Similarity=-0.001 Sum_probs=32.9
Q ss_pred eeecccCCCchhHHHHHHHHHc---CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK---GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~ 63 (212)
+..|+.+.|+.|+...-.++.. ...+....++.. ....+........+|++. .+|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeEE
Confidence 3456788999999776655442 122334444422 223344444456789877 556443
No 182
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=65.49 E-value=7.3 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.0
Q ss_pred cceEe-eCCeeeeeHHHHHHHHHHhCC
Q 028170 53 VPALV-DGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 53 ~P~l~-~~~~~~~es~~I~~yl~~~~~ 78 (212)
+|.+. .+|.+++.|..|+++..+++.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35555 889999999999999999874
No 183
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=64.73 E-value=20 Score=23.22 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=42.1
Q ss_pred ecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCC-hhhhhcC---CCcccceEeeCCe-eeeeHHHHHHHHHHh
Q 028170 4 LFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFS-PDFLKIN---PIGYVPALVDGDF-VVSDSFAILMYLEEK 76 (212)
Q Consensus 4 Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~~---p~~~~P~l~~~~~-~~~es~~I~~yl~~~ 76 (212)
|+|-..||.|....-.+...+..-....++........ ......+ ....+-+ ..+|. ...++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 46678899999988888887664455555542211110 0111111 1233333 55555 999999999876555
No 184
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=62.71 E-value=25 Score=21.73 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=34.9
Q ss_pred eeecccCCCchhHHHHHHHHHc----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~ 63 (212)
+..|+.+.|+.|++..-.|+.. +..+....++.. ...++........+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEEEEECCEEE
Confidence 3456788899999887766542 334555556532 223343333356789877 666543
No 185
>PHA02278 thioredoxin-like protein
Probab=59.44 E-value=45 Score=21.45 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=33.0
Q ss_pred ecccCCCchhHHHHHHHHHc----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee
Q 028170 4 LFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 4 Ly~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~ 63 (212)
-|+.+.|+.|+...=.++.. +.......++........+++....-...+|++. .+|..+
T Consensus 20 ~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 20 MITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 35678899999776554432 2223345555432111123444444467899888 677655
No 186
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=55.39 E-value=54 Score=21.15 Aligned_cols=57 Identities=18% Similarity=0.021 Sum_probs=31.9
Q ss_pred eeecccCCCchhHHHHHHH-----HHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCee
Q 028170 2 LKLFSYWRSSCSHRVRIGL-----NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~ 62 (212)
+..|+.+.|+.|+...-.+ ++.+.......++.. .............+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d----~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG----HERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc----ccHHHHHHcCCccCCEEEEEECCEE
Confidence 3456788899998665443 222323444555532 223334444567889887 66644
No 187
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=53.36 E-value=25 Score=21.71 Aligned_cols=56 Identities=16% Similarity=0.024 Sum_probs=33.5
Q ss_pred eecccCCCchhHHHHHHHHHcCC----ceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCee
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGL----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~ 62 (212)
..|+.+.|+.|+...-.++...- .+....++.. ....+........+|++. .+|..
T Consensus 17 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 17 VDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 44567889999977666654221 3444555532 234444444566799888 66654
No 188
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=50.71 E-value=31 Score=21.54 Aligned_cols=58 Identities=10% Similarity=0.000 Sum_probs=29.9
Q ss_pred eeecccCCCchhHHHHHHHHH----cC--CceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCe
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL----KG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~----~~--i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~ 61 (212)
+.+|+.+.|+.|+...-.+.. .. -.+....++... .....+........+|+++ .+|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEEEEeCCC
Confidence 356677889999977433221 11 223344444321 1133444444456789887 4454
No 189
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=49.43 E-value=36 Score=23.96 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=21.6
Q ss_pred eecc-cCCCchhH-------HHHHHHHHcCCceeEEEeecCCC
Q 028170 3 KLFS-YWRSSCSH-------RVRIGLNLKGLEYEYKAVNLVKG 37 (212)
Q Consensus 3 ~Ly~-~~~s~~~~-------~vr~~l~~~~i~~~~~~~~~~~~ 37 (212)
.||. ...||.|+ +..-.+...+-+|+++.|+....
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 3443 23477776 33444555667899999997653
No 190
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=47.47 E-value=64 Score=21.15 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=12.6
Q ss_pred eeecccCCCchhHHHH
Q 028170 2 LKLFSYWRSSCSHRVR 17 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr 17 (212)
+..|+.+.|++|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4566788899999875
No 191
>PHA03075 glutaredoxin-like protein; Provisional
Probab=47.26 E-value=34 Score=22.68 Aligned_cols=66 Identities=24% Similarity=0.143 Sum_probs=46.2
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEeeCCeeeeeHHHHHHHHHHhC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~~~~~es~~I~~yl~~~~ 77 (212)
+.|++-+.|+-|+.+.-+|.+..=+|+..+|+... -|.+ .|++=+|..++... =-..|.+|+...+
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS------fFsK---~g~v~~lg~d~~y~-lInn~~~~lgne~ 70 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNILS------FFSK---DGQVKVLGMDKGYT-LINNFFKHLGNEY 70 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee------eecc---CCceEEEeccccee-hHHHHHHhhcccE
Confidence 67999999999999999999999999999999642 1111 34555666433221 1356777777654
No 192
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=46.61 E-value=36 Score=23.44 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=48.4
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhc-C-C--CcccceEeeCCeeeee---HHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKI-N-P--IGYVPALVDGDFVVSD---SFAILMYLE 74 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-~-p--~~~~P~l~~~~~~~~e---s~~I~~yl~ 74 (212)
|..|+++.|+.|..--=.|+.+|++...+..+-. ...++. + | ...-=+.+.+|..+-+ ..+|.+.|+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~ 101 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA 101 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence 5789999999999999999999988877776621 222221 1 1 1233456667766644 578999999
Q ss_pred HhC
Q 028170 75 EKY 77 (212)
Q Consensus 75 ~~~ 77 (212)
++.
T Consensus 102 ~~p 104 (149)
T COG3019 102 EKP 104 (149)
T ss_pred CCC
Confidence 886
No 193
>PRK10996 thioredoxin 2; Provisional
Probab=42.37 E-value=44 Score=22.73 Aligned_cols=58 Identities=12% Similarity=0.010 Sum_probs=34.5
Q ss_pred eeecccCCCchhHHHHHHHHH----cCCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~ 63 (212)
+..|+.+.|+.|+...-.+.. .+-.+....++.. ..+.+.+......+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 345677889999976544433 2223555556543 234454444567899888 667644
No 194
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=42.31 E-value=48 Score=21.42 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=33.7
Q ss_pred eecccCCCchhHHHHHHHHHcCCc---eeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeeeeeH
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSDS 66 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~~es 66 (212)
..|+.+.|+.|+.+.-.++...-. .....++... . .+.+......+|++. .+|..+...
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 456788999999776555432111 2334555321 1 333333456899888 677665443
No 195
>PRK09381 trxA thioredoxin; Provisional
Probab=42.24 E-value=88 Score=19.79 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=32.6
Q ss_pred eecccCCCchhHHHHHHHHH----cCCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee
Q 028170 3 KLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~ 63 (212)
..|+.+.||.|+...-.++. .+-.+....++... ............+|++. .+|..+
T Consensus 26 v~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 26 VDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 34567889999977644432 22235556666432 23333334456799887 566544
No 196
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=41.97 E-value=1.2e+02 Score=21.18 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=33.1
Q ss_pred eecccCCCchhHHHHHHHHHc-----CCceeEEEeecCCCCCCChhhhhcCCC------cccceEe--eCCeeee
Q 028170 3 KLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPI------GYVPALV--DGDFVVS 64 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~p~------~~~P~l~--~~~~~~~ 64 (212)
..|+.+.|+.|+...-.++.. +-.++...++... .++..+.... .++|++. .+|..+.
T Consensus 52 V~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 52 VEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 456778899999776544332 2235566666432 2232222222 3489888 7776665
No 197
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=41.29 E-value=61 Score=23.89 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=33.1
Q ss_pred eeeccc---CCCchhHHHHHHHHHcCCce---eEEEeecCCCCCCChhhhhcCCCcccceEe--eCCee
Q 028170 2 LKLFSY---WRSSCSHRVRIGLNLKGLEY---EYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFV 62 (212)
Q Consensus 2 ~~Ly~~---~~s~~~~~vr~~l~~~~i~~---~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~ 62 (212)
+++|+. ++|+.|+.+.=.++...-.| +...++... ...++.....-...+|++. .+|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~--~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDT--PEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCC--cccHHHHHHcCCCccCEEEEEeCCee
Confidence 346666 78999998777776553222 222333221 1234444444567899888 45533
No 198
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=40.11 E-value=57 Score=21.56 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=34.4
Q ss_pred ecccCCCchhHHHHHHHHHcCCc----eeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeeee
Q 028170 4 LFSYWRSSCSHRVRIGLNLKGLE----YEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS 64 (212)
Q Consensus 4 Ly~~~~s~~~~~vr~~l~~~~i~----~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~~ 64 (212)
-|+..+|+.|+.+.=.++..--. .....++.. ..+++........+|++. .+|..+.
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD----~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID----EVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC----CCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 35678899999776666443222 234555543 234555554556799888 6776553
No 199
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=39.23 E-value=1.2e+02 Score=20.25 Aligned_cols=58 Identities=7% Similarity=-0.032 Sum_probs=29.7
Q ss_pred CCCchhHHHHHHH----HHcCCceeEEEeecCCCC---CCChhhhhcCCCc-ccceEe--eCCeeeee
Q 028170 8 WRSSCSHRVRIGL----NLKGLEYEYKAVNLVKGE---QFSPDFLKINPIG-YVPALV--DGDFVVSD 65 (212)
Q Consensus 8 ~~s~~~~~vr~~l----~~~~i~~~~~~~~~~~~~---~~~~~~~~~~p~~-~~P~l~--~~~~~~~e 65 (212)
..||.|+.+.=.+ ....-.+....++..... .....+....-.. .+|++. .++..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 6799999665443 333323556666653311 1122333322234 799888 45554444
No 200
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=38.74 E-value=39 Score=21.41 Aligned_cols=56 Identities=13% Similarity=-0.064 Sum_probs=30.3
Q ss_pred eecccCCCchhHHHHHHHHHc----C-CceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee
Q 028170 3 KLFSYWRSSCSHRVRIGLNLK----G-LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~----~-i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~ 63 (212)
..|+.+.|+.|+...-.+... + -......++.. ..+.....--..+|++. .+|..+
T Consensus 22 v~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 22 VDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 456788899999776555432 1 12334444422 22333333356788777 566543
No 201
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.54 E-value=38 Score=20.58 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=21.6
Q ss_pred CCchhHHHHHHHHHcCCceeEEEee
Q 028170 9 RSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 9 ~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
--++++|+.-+|+..|++|+..+-.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCC
Confidence 3578999999999999999887755
No 202
>COG3646 Uncharacterized phage-encoded protein [Function unknown]
Probab=38.49 E-value=44 Score=23.77 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCCCcccCC
Q 028170 123 DERDIWAKTHIGKGFAALEKLLKDYAGKYATGD 155 (212)
Q Consensus 123 ~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~ 155 (212)
.+....+...+.+.|..+|..|.. .++..+.
T Consensus 86 g~k~~~Fk~~~VkrF~Eme~~l~~--~~~~~~~ 116 (167)
T COG3646 86 GEKVRQFKAALVKRFDEMEEALAE--RAFARAL 116 (167)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHh--hhhhHHH
Confidence 356677888888999999999987 6666653
No 203
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=38.25 E-value=24 Score=20.42 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=20.2
Q ss_pred eecccCCCchhHHHHHHHHHcCCceeEEEee
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGLEYEYKAVN 33 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~ 33 (212)
++|.......+..++-+|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6787777778999999999999998776555
No 204
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=37.22 E-value=24 Score=24.32 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=15.6
Q ss_pred cchHHHHHHHHhCCcchhh
Q 028170 182 FPLLLRLHEAYSKLPAFQN 200 (212)
Q Consensus 182 ~p~l~~~~~~~~~~p~~~~ 200 (212)
.-.|++|++|+.++|-++.
T Consensus 111 r~~LqrfL~RV~~hP~L~~ 129 (140)
T cd06891 111 KANLQRWFNRVCSDPILIR 129 (140)
T ss_pred HHHHHHHHHHHhCChhhcc
Confidence 3579999999999996653
No 205
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=37.00 E-value=43 Score=20.99 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=31.0
Q ss_pred eecccCCCchhHHHHHHHHHcCC----ceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCe
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGL----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~ 61 (212)
..|+.+.|+.|+...-.+....- .+....++... .+...+......+|++. .+|.
T Consensus 23 v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 23 VNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD----DRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc----cHHHHHHcCCCccCEEEEEcCCC
Confidence 45677889999976555533222 24445555432 23333333456789887 4554
No 206
>COG3150 Predicted esterase [General function prediction only]
Probab=35.73 E-value=40 Score=24.20 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=27.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeec
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNL 34 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~ 34 (212)
+=||+|+.||.+.+..+.++..+-....+.+..
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~ 35 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYST 35 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeeec
Confidence 347799999999999999999887776666553
No 207
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=34.96 E-value=1.4e+02 Score=19.98 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=35.0
Q ss_pred ecccCCCchhHHHHH-H------HHHcCCceeEEEeecCCCCCCChhhhh----cCCCcccceEe---eCCeeeeeH
Q 028170 4 LFSYWRSSCSHRVRI-G------LNLKGLEYEYKAVNLVKGEQFSPDFLK----INPIGYVPALV---DGDFVVSDS 66 (212)
Q Consensus 4 Ly~~~~s~~~~~vr~-~------l~~~~i~~~~~~~~~~~~~~~~~~~~~----~~p~~~~P~l~---~~~~~~~es 66 (212)
.++...|++|++..- . ....+-.|..+.+|..........+.+ .+..+-.|+++ .+|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 356788999997742 2 222344677888875432111111111 22345678777 467887765
No 208
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=34.18 E-value=83 Score=20.71 Aligned_cols=59 Identities=15% Similarity=-0.062 Sum_probs=35.7
Q ss_pred eecccC--CCchhHHHHHHHHHcCCce----eEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeeeee
Q 028170 3 KLFSYW--RSSCSHRVRIGLNLKGLEY----EYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD 65 (212)
Q Consensus 3 ~Ly~~~--~s~~~~~vr~~l~~~~i~~----~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~~e 65 (212)
.+|+.. .||.|+.+.=+|+..--.| ....++.. ..++.....--..+|++. .+|..+..
T Consensus 32 ~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid----~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 32 LLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRA----DEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECC----CCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 345555 4999998887776654444 23344532 233545555567899998 67766543
No 209
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=33.23 E-value=54 Score=20.45 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=28.8
Q ss_pred eecccCCCchhHHHHHHHHHc-----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe
Q 028170 3 KLFSYWRSSCSHRVRIGLNLK-----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~ 57 (212)
..|+.+.|+.|+...=.+... +..+....++.. ....+........+|++.
T Consensus 21 v~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 21 IEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT----QEPGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc----CCHhHHHHcCCcccCEEE
Confidence 456778899998765444332 333444555532 223333334456788887
No 210
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.67 E-value=53 Score=25.41 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcC----CCcccceEeeCCeeeeeHHHHHHH
Q 028170 12 CSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKIN----PIGYVPALVDGDFVVSDSFAILMY 72 (212)
Q Consensus 12 ~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~----p~~~~P~l~~~~~~~~es~~I~~y 72 (212)
-|..||.+|+-.+|.|+...|.+.. ...+++..+- -.-.+|.+..+|..|.+...|.+-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~--~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDS--EFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccH--HHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 4789999999999999999999753 1223333222 134689777999999888877764
No 211
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=31.08 E-value=74 Score=22.57 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=24.4
Q ss_pred eeecccCCCchhHHHH----HHHHHc-CCceeEEEeecC
Q 028170 2 LKLFSYWRSSCSHRVR----IGLNLK-GLEYEYKAVNLV 35 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr----~~l~~~-~i~~~~~~~~~~ 35 (212)
+++|+...||||.... -+++.. ++.++.+++.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 5788899999998543 344444 788888888753
No 212
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=30.44 E-value=1.2e+02 Score=21.62 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=32.8
Q ss_pred ecccCCCchhHHHHHHHHH---cCCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeeeeeH
Q 028170 4 LFSYWRSSCSHRVRIGLNL---KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSDS 66 (212)
Q Consensus 4 Ly~~~~s~~~~~vr~~l~~---~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~~es 66 (212)
.||.+.|+.|+.+--.|.. ..-......++... . ......+...+|++. .+|..+..-
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEEEE
Confidence 4567889999865433322 22234445555321 1 334445567899888 677766543
No 213
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=30.43 E-value=90 Score=17.76 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccCCCcccCCCc-hHHHHhh
Q 028170 135 KGFAALEKLLKDYAGKYATGDEV-FLADLYL 164 (212)
Q Consensus 135 ~~l~~le~~L~~~~~~~l~G~~~-t~aD~~~ 164 (212)
...+.+.+.+.. +.|-.|+++ |.++++-
T Consensus 4 ~i~~~l~~~I~~--g~~~~g~~lps~~~la~ 32 (64)
T PF00392_consen 4 QIYDQLRQAILS--GRLPPGDRLPSERELAE 32 (64)
T ss_dssp HHHHHHHHHHHT--TSS-TTSBE--HHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCCCEeCCHHHHHH
Confidence 456677777777 899999998 9888764
No 214
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=30.04 E-value=1.2e+02 Score=17.89 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=21.7
Q ss_pred cccceEeeCCeeeeeHHHHHHHHHHhCC
Q 028170 51 GYVPALVDGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 51 ~~~P~l~~~~~~~~es~~I~~yl~~~~~ 78 (212)
.+-||+..+| ..+|-.+|.+||.+..+
T Consensus 14 M~dPVi~~~G-~tyer~~I~~~l~~~~~ 40 (73)
T PF04564_consen 14 MRDPVILPSG-HTYERSAIERWLEQNGG 40 (73)
T ss_dssp -SSEEEETTS-EEEEHHHHHHHHCTTSS
T ss_pred hhCceeCCcC-CEEcHHHHHHHHHcCCC
Confidence 4569988777 88999999999999443
No 215
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=30.04 E-value=1.6e+02 Score=19.23 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=29.9
Q ss_pred eecccCCCchhHHHHHHHHHc-C---CceeEEEeecCCCCCCChhhhhcCCCc-ccceEe--e-CCeeee
Q 028170 3 KLFSYWRSSCSHRVRIGLNLK-G---LEYEYKAVNLVKGEQFSPDFLKINPIG-YVPALV--D-GDFVVS 64 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~-~---i~~~~~~~~~~~~~~~~~~~~~~~p~~-~~P~l~--~-~~~~~~ 64 (212)
.-|+...|+.|+...-.+... . ..-..+.++...... +.....+..+ .+|++. + +|..+.
T Consensus 24 V~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 24 LLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcccCCCccceEEEECCCCCCch
Confidence 445678899999875555442 1 112333444332111 1112233333 489888 3 566554
No 216
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=29.84 E-value=2.4e+02 Score=21.15 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=38.9
Q ss_pred eecccCCCchhHHHHHHHHHc----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeeee------eHHHHH
Q 028170 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVS------DSFAIL 70 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~~------es~~I~ 70 (212)
..||.+.|+.|+...=.++.. +-.+....++.. ..+...+......+|++. .+|..+. ....|.
T Consensus 57 V~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~----~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 57 VKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT----RALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc----ccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 456778899998665544332 112333334422 234444444456889888 6665431 234555
Q ss_pred HHHHHhCC
Q 028170 71 MYLEEKYP 78 (212)
Q Consensus 71 ~yl~~~~~ 78 (212)
+|+.+.+.
T Consensus 133 ~fi~~~~~ 140 (224)
T PTZ00443 133 AFALGDFK 140 (224)
T ss_pred HHHHHHHH
Confidence 66655553
No 217
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=29.29 E-value=1.9e+02 Score=19.86 Aligned_cols=74 Identities=12% Similarity=-0.077 Sum_probs=44.3
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCCCCCChhhhhcCCCc----ccceEeeCCeeeeeHHHHHHHHHHhC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKGEQFSPDFLKINPIG----YVPALVDGDFVVSDSFAILMYLEEKY 77 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~----~~P~l~~~~~~~~es~~I~~yl~~~~ 77 (212)
++++|...|+.|-..--+|..+.-.=.....++... ..-...+..+.. ..=.++++|..+.+|.|+++-+...-
T Consensus 10 ~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e--~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 10 LVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSE--PGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred EEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCc--hhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 567778899998866666666655544444443321 112222222221 12233478999999999999887764
No 218
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=28.13 E-value=1.5e+02 Score=18.04 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=31.2
Q ss_pred eecccCCCchhHHHHHHHHHc----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCe
Q 028170 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~ 61 (212)
..++.+.|+.|+...-.++.. +-......++.. ....+........+|++. .+|.
T Consensus 19 i~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 19 VDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 455678899999776555432 223555555532 233333333456789877 5554
No 219
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=27.50 E-value=71 Score=20.00 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=29.1
Q ss_pred eeecccCCCchhHHHHHHHHHcCC----ceeEEEeecCCCCCCChhhhhcCCCcccceEe
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGL----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~ 57 (212)
+..||.+.|+.|+...=.++...- .+....++.. ....+........+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEE
Confidence 345677889999876544443222 2344455532 223443334456789887
No 220
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.36 E-value=2e+02 Score=23.43 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=70.8
Q ss_pred cceEeeCCeeeeeHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHHHHHHHcccch-----hhHHHHHHHhhhhcCcchHH
Q 028170 53 VPALVDGDFVVSDSFAILMYLEEKYPQPPLL-PSDLKRKAINYQAANIVSSSIQP-----LQNLAVVKYIEEKAGADERD 126 (212)
Q Consensus 53 ~P~l~~~~~~~~es~~I~~yl~~~~~~~~l~-p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 126 (212)
.+...+.++.+.|+.+|+.-|...-. .+. +-+..++.++-.|+..+...-.+ .+...+..++... +.+-
T Consensus 98 w~~~~~~dQ~~VEaa~la~aL~~a~~--~lW~~L~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~-G~~~-- 172 (361)
T PF10022_consen 98 WGFIGDYDQRLVEAASLALALLRAPE--WLWDPLDEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKV-GEEY-- 172 (361)
T ss_pred cCCcccchhhHhHHHHHHHHHHHCHH--HHHhhCCHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHc-CCCC--
Confidence 34445567999999999998877632 233 33667777777777665543222 1222222222222 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHHHh-cccCCCCc-chHHHHHHHHhC
Q 028170 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAVNR-FNLDMTQF-PLLLRLHEAYSK 194 (212)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~~~-~~~~~~~~-p~l~~~~~~~~~ 194 (212)
-..++...++.+|+.-.. ..|..-..-.-.|.+..-.++..... ....-+.. +...++.+|...
T Consensus 173 --d~~~i~~~l~~~e~~Y~G--dGWY~DG~~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~ 238 (361)
T PF10022_consen 173 --DEERIDYDLERIEEWYLG--DGWYSDGPEFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQR 238 (361)
T ss_pred --cHHHHHHHHHHHHHHhcc--CCccccCCccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 115667778888875544 45666434567788775555443111 11111222 246666666655
No 221
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=27.03 E-value=80 Score=19.93 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=28.9
Q ss_pred eecccCCCchhHHHHHHHHHcCCc---eeEEEeecCCCCCCChhhhhcCCCcccceEe--eCC
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKGLE---YEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGD 60 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~ 60 (212)
..|+.+.|+.|+...=.++...-. +....++.. ...+..........+|++. ++|
T Consensus 23 V~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 23 VLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred EEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHHHhcCCeecCEEEEEcCC
Confidence 456678899999776555433221 233344421 1223333333356789877 444
No 222
>PRK15371 effector protein YopJ; Provisional
Probab=26.44 E-value=3.2e+02 Score=21.48 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCCchHHHHhhHHHHHHHH-Hhcc-cCCCCcchHHHHHHHHhC
Q 028170 127 IWAKTHIGKGFAALEKLLKDYAGKYATGDEVFLADLYLAPQLYAAV-NRFN-LDMTQFPLLLRLHEAYSK 194 (212)
Q Consensus 127 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~aD~~~~~~l~~~~-~~~~-~~~~~~p~l~~~~~~~~~ 194 (212)
....+.+..+++.||+.+++ +.|+ -...+..|+-..+.+.... .+++ ..+.-+..-.++++.+.+
T Consensus 22 ~~~~~~L~~~i~~le~~~~~--G~~~-~~~~~~~Di~~lp~lv~~~N~r~P~LNL~~f~s~~~f~~aik~ 88 (287)
T PRK15371 22 EISNEELKNIITQLEDDIAD--GSWI-HKNYARTDLEVMPALVAQANNKYPEMNLKLVTSPLDLSIEIKE 88 (287)
T ss_pred hhhHHHHHHHHHHHHHHHHc--CCCC-CchhHHhhHHhhHHHHHHHhccCCCCCeeecCCHHHHHHHHHH
Confidence 34667789999999999998 7888 4459999999999887662 1222 345555555666666653
No 223
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=26.05 E-value=8.6 Score=24.62 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=22.7
Q ss_pred eeecccCCCchhHHHHHHHHHcCCceeEEEeecCCC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLKGLEYEYKAVNLVKG 37 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~~i~~~~~~~~~~~~ 37 (212)
+.+|+...+|..-.+.-+++-.+|+.+++.....+.
T Consensus 51 ieVYg~~~~p~~~~ll~~c~~r~Ipvrlv~~~v~N~ 86 (115)
T PF04705_consen 51 IEVYGSDGSPVPPELLAACRQRGIPVRLVDSAVVNQ 86 (115)
T ss_dssp EEEEEETTS---CCCCHHHHCTT--EEEE-HHHHCC
T ss_pred EEEeeecCCCCChHHHHHHHhcCCceEEecHHHHHH
Confidence 567888888877777778888888888887776653
No 224
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=25.95 E-value=1.6e+02 Score=20.01 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=31.3
Q ss_pred eecccCCCchhHHHHHHHHHc----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--e-CCeee
Q 028170 3 KLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--D-GDFVV 63 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~-~~~~~ 63 (212)
..|+...|+.|+...=.+... +-.+..+.++... .....+........+|++. + +|.++
T Consensus 25 V~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~--~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 25 VEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN--PKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC--cccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 445677899998766555432 2224455555432 1112333333456789777 3 46544
No 225
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=23.91 E-value=69 Score=23.25 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.0
Q ss_pred CCeeeeeHHHHHHHHHHhCC
Q 028170 59 GDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 59 ~~~~~~es~~I~~yl~~~~~ 78 (212)
.+..|++|..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 45679999999999999998
No 226
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=23.60 E-value=2e+02 Score=18.10 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=31.0
Q ss_pred eecccCCCchhHHHHHHHHHcC------C----ceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCe
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKG------L----EYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~------i----~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~ 61 (212)
..|+.+.|+.|+...-.+...- . .+....++.. ...+.........+|++. .+|.
T Consensus 23 v~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 23 VNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD----KESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC----CCHHHHHhCCCCcCCEEEEEeCCc
Confidence 4567788999997765554221 1 2334445432 223444444456889887 5554
No 227
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=23.55 E-value=98 Score=18.51 Aligned_cols=22 Identities=9% Similarity=-0.209 Sum_probs=17.0
Q ss_pred eeecccCCCchhHHHHHHHHHc
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK 23 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~ 23 (212)
+.+|....||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3567788999999887777654
No 228
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=23.54 E-value=1.7e+02 Score=18.61 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=29.2
Q ss_pred eeecccCCCchhHHHHHHHHH-----cCCceeEEEeecCCCCCCChhhh-hcCCCcccceEe
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL-----KGLEYEYKAVNLVKGEQFSPDFL-KINPIGYVPALV 57 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~-~~~p~~~~P~l~ 57 (212)
+..|+.+.|+.|+...-.+.. .+..+....++... ....+. .......+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~---~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG---EQREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc---cchhhHHhhcCCCcCCEEE
Confidence 456778899999976544433 33345555555332 111221 223456789887
No 229
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=23.36 E-value=1.7e+02 Score=18.38 Aligned_cols=60 Identities=13% Similarity=0.042 Sum_probs=30.9
Q ss_pred eecccCCCchhHHHHHHHHHcC---CceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeee
Q 028170 3 KLFSYWRSSCSHRVRIGLNLKG---LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVV 63 (212)
Q Consensus 3 ~Ly~~~~s~~~~~vr~~l~~~~---i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~ 63 (212)
..|+.+.|+.|+...=.++... -......++.... .....+.....-..+|++. .+|..+
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~-~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN-DSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC-hHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 3456788999986654444321 1234455553221 0112333334456789877 566544
No 230
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=23.08 E-value=1.1e+02 Score=18.42 Aligned_cols=52 Identities=10% Similarity=-0.066 Sum_probs=31.1
Q ss_pred eeecccCCCchhHHHHHHHHHc------CCceeEEEeecCCCCCCChhhhhcCCCcccceEe
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK------GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV 57 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~------~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~ 57 (212)
+.+|+.+.|+.|+...-.+... +-.+....++.. ....+........+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT----ANNDLCSEYGVRGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc----chHHHHHhCCCCCCCEEE
Confidence 4567778899999876666442 234555555532 234444444456789877
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.69 E-value=3.9e+02 Score=21.17 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=50.0
Q ss_pred eeecccCCCchhHHHHHHHHH----cCCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCeeeee------HHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL----KGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDFVVSD------SFAI 69 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~----~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~~~~e------s~~I 69 (212)
+.+|+.+.|+.|....=.|+. .+=.|.+..++.. ..+..-.......+|++. .+|..|-+ -..|
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D----~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD----AEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC----cchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 457788889999866544443 3446777777754 344555555567899887 67766543 3578
Q ss_pred HHHHHHhCCC
Q 028170 70 LMYLEEKYPQ 79 (212)
Q Consensus 70 ~~yl~~~~~~ 79 (212)
.++|++..+.
T Consensus 123 r~~ld~~~~~ 132 (304)
T COG3118 123 RQFLDKVLPA 132 (304)
T ss_pred HHHHHHhcCh
Confidence 9999988763
No 232
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=22.32 E-value=66 Score=22.79 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=12.2
Q ss_pred CCeeee--eHHHHHHHHHHhCC
Q 028170 59 GDFVVS--DSFAILMYLEEKYP 78 (212)
Q Consensus 59 ~~~~~~--es~~I~~yl~~~~~ 78 (212)
.|..|+ |-.+|++||++.+|
T Consensus 47 hGl~Is~eer~avVkYLAd~~G 68 (167)
T PF09098_consen 47 HGLPISPEERRAVVKYLADTQG 68 (167)
T ss_dssp C-----HHHHHHHHHHHHHHT-
T ss_pred cCCCCCHHHHHHHHHHHHHccC
Confidence 344453 46899999999998
No 233
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=21.84 E-value=1.7e+02 Score=21.13 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=16.8
Q ss_pred eeecccCCCchhHHHHHHHHH
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL 22 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~ 22 (212)
+.+|..+.||+|++..-.+..
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEECCCCccHHHHHHHHhh
Confidence 356777889999999888874
No 234
>PRK09266 hypothetical protein; Provisional
Probab=21.77 E-value=1.1e+02 Score=23.49 Aligned_cols=59 Identities=25% Similarity=0.301 Sum_probs=37.8
Q ss_pred HHHHcCCceeEEEeecCCCCCCChhhhhcC-CCcccceEeeCCeeeeeHHHHHHHHHHhCC
Q 028170 19 GLNLKGLEYEYKAVNLVKGEQFSPDFLKIN-PIGYVPALVDGDFVVSDSFAILMYLEEKYP 78 (212)
Q Consensus 19 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p~~~~P~l~~~~~~~~es~~I~~yl~~~~~ 78 (212)
.+...|++++...+.+.+-... ++..-.| -.+-+||...|+..+.....|.+.|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~a-devfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRF-AGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHh-hHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 3455689988888886542222 2333344 358899999777777644677777766653
No 235
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=21.58 E-value=2.1e+02 Score=17.87 Aligned_cols=58 Identities=10% Similarity=-0.081 Sum_probs=30.7
Q ss_pred eeecccCCCchhHHHHHHHHHc----CCceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCe
Q 028170 2 LKLFSYWRSSCSHRVRIGLNLK----GLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~ 61 (212)
+..|+.+.|+.|+...-.+... +-.+....++... .....+........+|++. .+|.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~--~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE--DKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc--cccHHHHHHcCCCcCCEEEEEeCCC
Confidence 4566788899998764443332 2123444445322 1123344344456789887 4443
No 236
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=21.32 E-value=80 Score=20.03 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=20.2
Q ss_pred eeecccCCCchhHHHHHHHHH-------cCCceeEEEeecC
Q 028170 2 LKLFSYWRSSCSHRVRIGLNL-------KGLEYEYKAVNLV 35 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l~~-------~~i~~~~~~~~~~ 35 (212)
+.+|+.+.||+|++..-.+.. .+-.+..+.++..
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 356678999999987555542 1224666666654
No 237
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=20.43 E-value=2.2e+02 Score=17.40 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=30.3
Q ss_pred eeecccCCCchhHHHHHHH-----HHcC--CceeEEEeecCCCCCCChhhhhcCCCcccceEe--eCCe
Q 028170 2 LKLFSYWRSSCSHRVRIGL-----NLKG--LEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--DGDF 61 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l-----~~~~--i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~~~~ 61 (212)
+..|+.+.|+.|+...=.+ ...+ ..+....++... .....+......+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----HRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----ChhhHhhcCCCcCCEEEEEeCCC
Confidence 3456778899999654333 2223 245555666332 22333333356789877 4554
No 238
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=20.39 E-value=2.2e+02 Score=17.38 Aligned_cols=41 Identities=12% Similarity=-0.045 Sum_probs=27.1
Q ss_pred CCcccCCCchHHHHhhHHHHHHHHHhcccC-C-CCcchHHHHHHHHh
Q 028170 149 GKYATGDEVFLADLYLAPQLYAAVNRFNLD-M-TQFPLLLRLHEAYS 193 (212)
Q Consensus 149 ~~~l~G~~~t~aD~~~~~~l~~~~~~~~~~-~-~~~p~l~~~~~~~~ 193 (212)
.+|+.. ++ -|+..|+++.++ ...+.. . +.--++..|.+++.
T Consensus 34 ~ky~t~--l~-~DvL~~~ll~~L-~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 34 LKYFTD--LG-YDVLTFCLLERL-SNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred Hhhcch--hh-HHHHHHHHHHHH-hcccchhcCcCCCCHHHHHHHHh
Confidence 566642 44 389999999988 423322 2 34478999999875
No 239
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.23 E-value=1.4e+02 Score=21.29 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=20.8
Q ss_pred eeecccCCCchhHHHHHHH----HHc----CCceeEEEeec
Q 028170 2 LKLFSYWRSSCSHRVRIGL----NLK----GLEYEYKAVNL 34 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~vr~~l----~~~----~i~~~~~~~~~ 34 (212)
+++|+...||||....-.| +.. ++.++.+++.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 4678889999999544443 343 45555555543
No 240
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=20.19 E-value=5.7e+02 Score=22.33 Aligned_cols=58 Identities=7% Similarity=-0.047 Sum_probs=32.0
Q ss_pred ecccCCCchhHHHHHH-H------HHcCCceeEEEeecCCCCCCChhhhhcCCCcccceEe--e-CCee
Q 028170 4 LFSYWRSSCSHRVRIG-L------NLKGLEYEYKAVNLVKGEQFSPDFLKINPIGYVPALV--D-GDFV 62 (212)
Q Consensus 4 Ly~~~~s~~~~~vr~~-l------~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~--~-~~~~ 62 (212)
-++.+.|+.|+...-. + +..+ .+....+|..+......++.+......+|++. + +|+.
T Consensus 480 dF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 480 DLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 4567889999875332 1 1112 46667777654322233444444455689887 3 4554
No 241
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.03 E-value=1.5e+02 Score=15.19 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=19.3
Q ss_pred CcccceEeeCCeeeeeHHHHHHHHH
Q 028170 50 IGYVPALVDGDFVVSDSFAILMYLE 74 (212)
Q Consensus 50 ~~~~P~l~~~~~~~~es~~I~~yl~ 74 (212)
.|.+|....++........|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4678877767788888888888875
No 242
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=20.01 E-value=1.6e+02 Score=21.47 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=22.9
Q ss_pred eeecccCCCchhHHH----HHHHHHcCCceeEEEeec
Q 028170 2 LKLFSYWRSSCSHRV----RIGLNLKGLEYEYKAVNL 34 (212)
Q Consensus 2 ~~Ly~~~~s~~~~~v----r~~l~~~~i~~~~~~~~~ 34 (212)
|.+|+...||||.-. +-++...+++.+.+++.+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 568888899999854 334445677777777664
Done!