BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028172
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9
Processive Endoglucanase From Separately Expressed Gh9
And Cbm3c Modules
Length = 466
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 60 GEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDD 95
GE +++F E +R G +S L + R DSGLDD
Sbjct: 27 GEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDD 62
>pdb|3SE8|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
Length = 209
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 73 KRRGMTPTSLLEDSSRTDSGLDDK 96
KRRG P L+ D+SR SG+ D+
Sbjct: 37 KRRGQVPRLLIYDTSRRASGVPDR 60
>pdb|4B55|A Chain A, Crystal Structure Of The Covalent Adduct Formed Between
Mycobacterium Marinum Aryalamine N-acetyltransferase And
Phenyl Vinyl Ketone A Derivative Of Piperidinols
Length = 283
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 72 LKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDK 118
+ RRG T LLED++ L D+ + D+G R + IDK
Sbjct: 231 IHRRGGTEKILLEDAAAVVDTLGDRFGINVADVG--ERGRLEARIDK 275
>pdb|2VFB|A Chain A, The Structure Of Mycobacterium Marinum Arylamine N-
Acetyltransferase
pdb|2VFC|A Chain A, The Structure Of Mycobacterium Marinum Arylamine N-
Acetyltransferase In Complex With Coa
pdb|2VFC|B Chain B, The Structure Of Mycobacterium Marinum Arylamine N-
Acetyltransferase In Complex With Coa
pdb|3LTW|A Chain A, The Structure Of Mycobacterium Marinum Arylamine
N-Acetyltransferase In Complex With Hydralazine
Length = 280
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 72 LKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDK 118
+ RRG T LLED++ L D+ + D+G R + IDK
Sbjct: 228 IHRRGGTEKILLEDAAAVVDTLGDRFGINVADVG--ERGRLEARIDK 272
>pdb|3POT|B Chain B, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
pdb|3POT|E Chain E, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
Length = 443
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 94 DDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEGLVPRAK 143
DD+ L EE + + + KS+ +R++A+N EG+E + AK
Sbjct: 12 DDRGNLVEEQVPLEALSPLRNPAIKSIVQGIKRTVAVNLEGIENALKTAK 61
>pdb|1MRO|B Chain B, Methyl-Coenzyme M Reductase
pdb|1MRO|E Chain E, Methyl-Coenzyme M Reductase
pdb|1HBM|B Chain B, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|E Chain E, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBN|B Chain B, Methyl-Coenzyme M Reductase
pdb|1HBN|E Chain E, Methyl-Coenzyme M Reductase
pdb|1HBO|B Chain B, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|E Chain E, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBU|B Chain B, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|E Chain E, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|3M1V|B Chain B, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M1V|E Chain E, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|B Chain B, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|E Chain E, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|B Chain B, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|E Chain E, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|B Chain B, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|E Chain E, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|B Chain B, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|E Chain E, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|B Chain B, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|E Chain E, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
Length = 442
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 94 DDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLEGLVPRAK 143
DD+ L EE + + + KS+ +R++A+N EG+E + AK
Sbjct: 11 DDRGNLVEEQVPLEALSPLRNPAIKSIVQGIKRTVAVNLEGIENALKTAK 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,388,896
Number of Sequences: 62578
Number of extensions: 193659
Number of successful extensions: 302
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 6
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)